Multiple sequence alignment - TraesCS1D01G263500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G263500 chr1D 100.000 2573 0 0 1 2573 358218856 358216284 0.000000e+00 4752
1 TraesCS1D01G263500 chr1D 80.074 271 40 2 428 684 101459102 101459372 3.380000e-44 189
2 TraesCS1D01G263500 chr1A 93.713 843 33 7 1122 1944 458918159 458919001 0.000000e+00 1245
3 TraesCS1D01G263500 chr1A 90.956 387 33 2 2183 2568 458924068 458924453 1.060000e-143 520
4 TraesCS1D01G263500 chr1A 95.669 254 11 0 871 1124 458917947 458918200 2.380000e-110 409
5 TraesCS1D01G263500 chr1A 84.277 318 18 10 1 311 458916664 458916956 5.420000e-72 281
6 TraesCS1D01G263500 chr1A 91.925 161 8 1 1944 2099 458923741 458923901 1.200000e-53 220
7 TraesCS1D01G263500 chr1A 88.957 163 14 4 423 583 290371729 290371889 5.620000e-47 198
8 TraesCS1D01G263500 chr1A 94.737 114 6 0 742 855 458917848 458917961 7.320000e-41 178
9 TraesCS1D01G263500 chr1A 89.109 101 8 3 1845 1943 551155003 551155102 3.480000e-24 122
10 TraesCS1D01G263500 chr1B 84.118 1083 94 42 1122 2177 480977007 480978038 0.000000e+00 976
11 TraesCS1D01G263500 chr1B 86.719 384 29 9 741 1124 480976687 480977048 8.570000e-110 407
12 TraesCS1D01G263500 chr1B 79.920 249 43 5 459 701 593443952 593443705 2.630000e-40 176
13 TraesCS1D01G263500 chr2A 81.034 290 44 7 428 708 37274439 37274152 1.200000e-53 220
14 TraesCS1D01G263500 chr2A 92.391 92 3 4 1848 1936 562095052 562095142 7.470000e-26 128
15 TraesCS1D01G263500 chr5D 91.083 157 13 1 428 583 345963900 345963744 7.210000e-51 211
16 TraesCS1D01G263500 chr5D 91.398 93 6 2 1849 1939 228069779 228069687 2.690000e-25 126
17 TraesCS1D01G263500 chr5B 91.083 157 13 1 428 583 458631796 458631640 7.210000e-51 211
18 TraesCS1D01G263500 chr3A 91.026 156 14 0 428 583 732984573 732984418 7.210000e-51 211
19 TraesCS1D01G263500 chr5A 89.873 158 14 2 427 583 395287946 395288102 4.340000e-48 202
20 TraesCS1D01G263500 chr7A 89.809 157 15 1 428 583 495429111 495428955 1.560000e-47 200
21 TraesCS1D01G263500 chr7D 89.241 158 17 0 426 583 19574166 19574009 5.620000e-47 198
22 TraesCS1D01G263500 chr2D 91.489 94 6 2 1853 1944 509477740 509477647 7.470000e-26 128
23 TraesCS1D01G263500 chr2D 93.258 89 3 3 1853 1938 627260882 627260970 7.470000e-26 128
24 TraesCS1D01G263500 chr3D 89.109 101 9 2 1844 1942 282328939 282329039 9.670000e-25 124
25 TraesCS1D01G263500 chr3B 90.526 95 7 2 1851 1944 157246644 157246737 9.670000e-25 124
26 TraesCS1D01G263500 chr2B 87.879 99 10 2 1839 1935 484107476 484107574 5.820000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G263500 chr1D 358216284 358218856 2572 True 4752.00 4752 100.0000 1 2573 1 chr1D.!!$R1 2572
1 TraesCS1D01G263500 chr1A 458916664 458919001 2337 False 528.25 1245 92.0990 1 1944 4 chr1A.!!$F3 1943
2 TraesCS1D01G263500 chr1A 458923741 458924453 712 False 370.00 520 91.4405 1944 2568 2 chr1A.!!$F4 624
3 TraesCS1D01G263500 chr1B 480976687 480978038 1351 False 691.50 976 85.4185 741 2177 2 chr1B.!!$F1 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 216 0.031178 CTTGCCTTGTTTCAAGCGCT 59.969 50.0 2.64 2.64 34.12 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 2439 0.035739 ACGTAACCAACTGCCCGATT 59.964 50.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 3.171528 ACCTCCTCTAAGGGTACACAAC 58.828 50.000 0.00 0.00 41.04 3.32
115 117 5.541953 ACCGGAACCCTAATGTAGATAAC 57.458 43.478 9.46 0.00 0.00 1.89
116 118 4.964262 ACCGGAACCCTAATGTAGATAACA 59.036 41.667 9.46 0.00 43.86 2.41
145 147 5.503498 CGATCAAACGTTTACAAAACCTGA 58.497 37.500 14.20 4.55 0.00 3.86
159 161 0.470766 ACCTGAAACGTGGTGGCTAA 59.529 50.000 0.00 0.00 34.90 3.09
160 162 1.156736 CCTGAAACGTGGTGGCTAAG 58.843 55.000 0.00 0.00 0.00 2.18
161 163 0.517316 CTGAAACGTGGTGGCTAAGC 59.483 55.000 0.00 0.00 0.00 3.09
162 164 0.179043 TGAAACGTGGTGGCTAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
164 166 1.539827 GAAACGTGGTGGCTAAGCATT 59.460 47.619 0.00 0.00 38.84 3.56
165 167 1.165270 AACGTGGTGGCTAAGCATTC 58.835 50.000 0.00 0.00 38.84 2.67
167 169 1.164411 CGTGGTGGCTAAGCATTCAA 58.836 50.000 0.00 0.00 38.84 2.69
168 170 1.745087 CGTGGTGGCTAAGCATTCAAT 59.255 47.619 0.00 0.00 38.84 2.57
179 181 6.211515 GCTAAGCATTCAATTATCAAGGGTG 58.788 40.000 0.00 0.00 0.00 4.61
207 209 4.379918 GCTCTATTGTCCTTGCCTTGTTTC 60.380 45.833 0.00 0.00 0.00 2.78
208 210 4.724399 TCTATTGTCCTTGCCTTGTTTCA 58.276 39.130 0.00 0.00 0.00 2.69
209 211 5.136828 TCTATTGTCCTTGCCTTGTTTCAA 58.863 37.500 0.00 0.00 0.00 2.69
210 212 3.799281 TTGTCCTTGCCTTGTTTCAAG 57.201 42.857 2.90 2.90 39.38 3.02
211 213 1.408702 TGTCCTTGCCTTGTTTCAAGC 59.591 47.619 4.22 1.77 38.59 4.01
212 214 0.667993 TCCTTGCCTTGTTTCAAGCG 59.332 50.000 4.22 0.36 38.59 4.68
213 215 0.940991 CCTTGCCTTGTTTCAAGCGC 60.941 55.000 0.00 0.00 38.59 5.92
214 216 0.031178 CTTGCCTTGTTTCAAGCGCT 59.969 50.000 2.64 2.64 34.12 5.92
215 217 0.248990 TTGCCTTGTTTCAAGCGCTG 60.249 50.000 12.58 5.47 0.00 5.18
216 218 2.018324 GCCTTGTTTCAAGCGCTGC 61.018 57.895 12.58 1.92 0.00 5.25
217 219 1.727022 CCTTGTTTCAAGCGCTGCG 60.727 57.895 19.17 19.17 0.00 5.18
218 220 1.279539 CTTGTTTCAAGCGCTGCGA 59.720 52.632 28.07 8.46 0.00 5.10
219 221 0.316937 CTTGTTTCAAGCGCTGCGAA 60.317 50.000 28.07 14.96 0.00 4.70
220 222 0.316937 TTGTTTCAAGCGCTGCGAAG 60.317 50.000 28.07 14.06 0.00 3.79
259 261 0.392998 ATGGCGTCCTTGTGACATCC 60.393 55.000 0.00 0.00 44.71 3.51
311 318 9.605275 CAGGAAGATGATATACTCAAAACAGAA 57.395 33.333 0.00 0.00 37.44 3.02
337 361 2.042686 TTGCATGAGAGATTTCGGGG 57.957 50.000 0.00 0.00 0.00 5.73
338 362 1.203237 TGCATGAGAGATTTCGGGGA 58.797 50.000 0.00 0.00 0.00 4.81
339 363 1.139654 TGCATGAGAGATTTCGGGGAG 59.860 52.381 0.00 0.00 0.00 4.30
340 364 1.414181 GCATGAGAGATTTCGGGGAGA 59.586 52.381 0.00 0.00 0.00 3.71
341 365 2.158900 GCATGAGAGATTTCGGGGAGAA 60.159 50.000 0.00 0.00 37.01 2.87
342 366 3.462021 CATGAGAGATTTCGGGGAGAAC 58.538 50.000 0.00 0.00 38.83 3.01
343 367 1.476891 TGAGAGATTTCGGGGAGAACG 59.523 52.381 0.00 0.00 38.83 3.95
344 368 1.477295 GAGAGATTTCGGGGAGAACGT 59.523 52.381 0.00 0.00 38.83 3.99
345 369 2.686915 GAGAGATTTCGGGGAGAACGTA 59.313 50.000 0.00 0.00 38.83 3.57
346 370 3.297736 AGAGATTTCGGGGAGAACGTAT 58.702 45.455 0.00 0.00 38.83 3.06
347 371 3.318557 AGAGATTTCGGGGAGAACGTATC 59.681 47.826 0.00 0.00 38.83 2.24
348 372 3.297736 AGATTTCGGGGAGAACGTATCT 58.702 45.455 0.00 0.00 42.61 1.98
349 373 4.467769 AGATTTCGGGGAGAACGTATCTA 58.532 43.478 0.00 0.00 38.96 1.98
350 374 4.519730 AGATTTCGGGGAGAACGTATCTAG 59.480 45.833 0.00 0.00 38.96 2.43
351 375 3.287867 TTCGGGGAGAACGTATCTAGT 57.712 47.619 0.00 0.00 38.96 2.57
352 376 2.569059 TCGGGGAGAACGTATCTAGTG 58.431 52.381 0.00 0.00 38.96 2.74
353 377 1.001597 CGGGGAGAACGTATCTAGTGC 60.002 57.143 0.00 0.00 38.96 4.40
354 378 2.029623 GGGGAGAACGTATCTAGTGCA 58.970 52.381 0.00 0.00 38.96 4.57
355 379 2.223758 GGGGAGAACGTATCTAGTGCAC 60.224 54.545 9.40 9.40 38.96 4.57
356 380 2.223758 GGGAGAACGTATCTAGTGCACC 60.224 54.545 14.63 0.00 38.96 5.01
357 381 2.541178 GGAGAACGTATCTAGTGCACCG 60.541 54.545 14.63 11.34 38.96 4.94
358 382 1.404391 AGAACGTATCTAGTGCACCGG 59.596 52.381 14.63 0.00 36.32 5.28
359 383 1.402968 GAACGTATCTAGTGCACCGGA 59.597 52.381 14.63 12.48 0.00 5.14
360 384 1.022735 ACGTATCTAGTGCACCGGAG 58.977 55.000 14.63 8.96 0.00 4.63
361 385 1.022735 CGTATCTAGTGCACCGGAGT 58.977 55.000 14.63 0.00 0.00 3.85
362 386 1.404391 CGTATCTAGTGCACCGGAGTT 59.596 52.381 14.63 6.53 0.00 3.01
363 387 2.541178 CGTATCTAGTGCACCGGAGTTC 60.541 54.545 14.63 0.00 0.00 3.01
364 388 0.456221 ATCTAGTGCACCGGAGTTCG 59.544 55.000 14.63 0.00 38.88 3.95
365 389 0.892358 TCTAGTGCACCGGAGTTCGT 60.892 55.000 14.63 0.00 37.11 3.85
366 390 0.732880 CTAGTGCACCGGAGTTCGTG 60.733 60.000 14.63 0.00 37.11 4.35
367 391 1.457823 TAGTGCACCGGAGTTCGTGT 61.458 55.000 14.63 0.00 37.11 4.49
368 392 2.279851 TGCACCGGAGTTCGTGTG 60.280 61.111 9.46 7.78 40.48 3.82
370 394 3.041940 CACCGGAGTTCGTGTGCC 61.042 66.667 9.46 0.00 34.90 5.01
371 395 3.542676 ACCGGAGTTCGTGTGCCA 61.543 61.111 9.46 0.00 37.11 4.92
372 396 3.041940 CCGGAGTTCGTGTGCCAC 61.042 66.667 0.00 0.00 37.11 5.01
373 397 2.029073 CGGAGTTCGTGTGCCACT 59.971 61.111 0.00 0.00 31.34 4.00
374 398 2.310233 CGGAGTTCGTGTGCCACTG 61.310 63.158 0.00 0.00 31.34 3.66
375 399 1.961277 GGAGTTCGTGTGCCACTGG 60.961 63.158 0.00 0.00 31.34 4.00
376 400 1.227556 GAGTTCGTGTGCCACTGGT 60.228 57.895 0.00 0.00 31.34 4.00
377 401 1.498865 GAGTTCGTGTGCCACTGGTG 61.499 60.000 0.00 0.00 31.34 4.17
378 402 2.899838 TTCGTGTGCCACTGGTGC 60.900 61.111 0.00 0.00 31.34 5.01
379 403 3.689002 TTCGTGTGCCACTGGTGCA 62.689 57.895 0.00 0.00 36.12 4.57
384 408 4.182433 TGCCACTGGTGCACCGAA 62.182 61.111 30.07 13.62 39.43 4.30
385 409 3.660111 GCCACTGGTGCACCGAAC 61.660 66.667 30.07 14.17 39.43 3.95
386 410 3.345808 CCACTGGTGCACCGAACG 61.346 66.667 30.07 19.72 39.43 3.95
387 411 4.012895 CACTGGTGCACCGAACGC 62.013 66.667 30.07 6.48 39.43 4.84
398 422 3.864944 CGAACGCCGGTTACACAT 58.135 55.556 1.90 0.00 36.24 3.21
399 423 2.155665 CGAACGCCGGTTACACATT 58.844 52.632 1.90 0.00 36.24 2.71
400 424 1.348276 CGAACGCCGGTTACACATTA 58.652 50.000 1.90 0.00 36.24 1.90
401 425 1.725706 CGAACGCCGGTTACACATTAA 59.274 47.619 1.90 0.00 36.24 1.40
402 426 2.157279 CGAACGCCGGTTACACATTAAA 59.843 45.455 1.90 0.00 36.24 1.52
403 427 3.363772 CGAACGCCGGTTACACATTAAAA 60.364 43.478 1.90 0.00 36.24 1.52
404 428 4.535116 GAACGCCGGTTACACATTAAAAA 58.465 39.130 1.90 0.00 36.24 1.94
405 429 4.769859 ACGCCGGTTACACATTAAAAAT 57.230 36.364 1.90 0.00 0.00 1.82
406 430 4.477780 ACGCCGGTTACACATTAAAAATG 58.522 39.130 1.90 0.00 0.00 2.32
407 431 4.023021 ACGCCGGTTACACATTAAAAATGT 60.023 37.500 1.90 0.00 0.00 2.71
408 432 4.918583 CGCCGGTTACACATTAAAAATGTT 59.081 37.500 1.90 0.00 0.00 2.71
409 433 5.059955 CGCCGGTTACACATTAAAAATGTTC 59.940 40.000 1.90 0.00 0.00 3.18
410 434 5.921408 GCCGGTTACACATTAAAAATGTTCA 59.079 36.000 1.90 0.00 0.00 3.18
411 435 6.421202 GCCGGTTACACATTAAAAATGTTCAA 59.579 34.615 1.90 0.00 0.00 2.69
412 436 7.042658 GCCGGTTACACATTAAAAATGTTCAAA 60.043 33.333 1.90 0.00 0.00 2.69
413 437 8.818057 CCGGTTACACATTAAAAATGTTCAAAA 58.182 29.630 2.59 0.00 0.00 2.44
420 444 9.367717 CACATTAAAAATGTTCAAAAATCCACG 57.632 29.630 2.59 0.00 0.00 4.94
421 445 9.319143 ACATTAAAAATGTTCAAAAATCCACGA 57.681 25.926 0.00 0.00 0.00 4.35
426 450 9.553418 AAAAATGTTCAAAAATCCACGAAAAAG 57.447 25.926 0.00 0.00 0.00 2.27
427 451 8.485976 AAATGTTCAAAAATCCACGAAAAAGA 57.514 26.923 0.00 0.00 0.00 2.52
428 452 8.485976 AATGTTCAAAAATCCACGAAAAAGAA 57.514 26.923 0.00 0.00 0.00 2.52
429 453 7.891183 TGTTCAAAAATCCACGAAAAAGAAA 57.109 28.000 0.00 0.00 0.00 2.52
430 454 8.485976 TGTTCAAAAATCCACGAAAAAGAAAT 57.514 26.923 0.00 0.00 0.00 2.17
431 455 8.940952 TGTTCAAAAATCCACGAAAAAGAAATT 58.059 25.926 0.00 0.00 0.00 1.82
458 482 8.514136 AAATTAAAATTCGAAACATTGCTCGA 57.486 26.923 0.00 7.21 42.05 4.04
459 483 7.725610 ATTAAAATTCGAAACATTGCTCGAG 57.274 32.000 8.45 8.45 44.25 4.04
460 484 5.356882 AAAATTCGAAACATTGCTCGAGA 57.643 34.783 18.75 0.00 44.25 4.04
461 485 5.551760 AAATTCGAAACATTGCTCGAGAT 57.448 34.783 18.75 0.00 44.25 2.75
462 486 6.662414 AAATTCGAAACATTGCTCGAGATA 57.338 33.333 18.75 2.54 44.25 1.98
463 487 5.643339 ATTCGAAACATTGCTCGAGATAC 57.357 39.130 18.75 0.00 44.25 2.24
464 488 4.104696 TCGAAACATTGCTCGAGATACA 57.895 40.909 18.75 1.12 39.07 2.29
465 489 4.490743 TCGAAACATTGCTCGAGATACAA 58.509 39.130 18.75 11.56 39.07 2.41
466 490 4.926832 TCGAAACATTGCTCGAGATACAAA 59.073 37.500 18.75 2.00 39.07 2.83
467 491 5.407084 TCGAAACATTGCTCGAGATACAAAA 59.593 36.000 18.75 0.13 39.07 2.44
468 492 6.073494 TCGAAACATTGCTCGAGATACAAAAA 60.073 34.615 18.75 0.00 39.07 1.94
469 493 6.031417 CGAAACATTGCTCGAGATACAAAAAC 59.969 38.462 18.75 0.00 37.23 2.43
470 494 4.957971 ACATTGCTCGAGATACAAAAACG 58.042 39.130 18.75 4.59 0.00 3.60
471 495 4.688879 ACATTGCTCGAGATACAAAAACGA 59.311 37.500 18.75 0.00 0.00 3.85
472 496 5.178623 ACATTGCTCGAGATACAAAAACGAA 59.821 36.000 18.75 0.00 32.85 3.85
473 497 5.660629 TTGCTCGAGATACAAAAACGAAA 57.339 34.783 18.75 0.00 32.85 3.46
474 498 5.660629 TGCTCGAGATACAAAAACGAAAA 57.339 34.783 18.75 0.00 32.85 2.29
475 499 6.050454 TGCTCGAGATACAAAAACGAAAAA 57.950 33.333 18.75 0.00 32.85 1.94
476 500 6.664515 TGCTCGAGATACAAAAACGAAAAAT 58.335 32.000 18.75 0.00 32.85 1.82
477 501 6.577055 TGCTCGAGATACAAAAACGAAAAATG 59.423 34.615 18.75 0.00 32.85 2.32
478 502 6.577427 GCTCGAGATACAAAAACGAAAAATGT 59.423 34.615 18.75 0.00 32.85 2.71
479 503 7.408290 GCTCGAGATACAAAAACGAAAAATGTG 60.408 37.037 18.75 0.00 32.85 3.21
480 504 7.631822 TCGAGATACAAAAACGAAAAATGTGA 58.368 30.769 0.00 0.00 0.00 3.58
481 505 7.584847 TCGAGATACAAAAACGAAAAATGTGAC 59.415 33.333 0.00 0.00 0.00 3.67
482 506 7.374754 CGAGATACAAAAACGAAAAATGTGACA 59.625 33.333 0.00 0.00 0.00 3.58
483 507 9.180678 GAGATACAAAAACGAAAAATGTGACAT 57.819 29.630 0.00 0.00 0.00 3.06
484 508 9.180678 AGATACAAAAACGAAAAATGTGACATC 57.819 29.630 0.00 0.00 0.00 3.06
485 509 8.864069 ATACAAAAACGAAAAATGTGACATCA 57.136 26.923 0.00 0.00 0.00 3.07
486 510 7.588143 ACAAAAACGAAAAATGTGACATCAA 57.412 28.000 0.00 0.00 0.00 2.57
487 511 8.195617 ACAAAAACGAAAAATGTGACATCAAT 57.804 26.923 0.00 0.00 0.00 2.57
488 512 8.115520 ACAAAAACGAAAAATGTGACATCAATG 58.884 29.630 0.00 0.00 0.00 2.82
489 513 7.769272 AAAACGAAAAATGTGACATCAATGT 57.231 28.000 0.00 0.00 45.16 2.71
490 514 6.752335 AACGAAAAATGTGACATCAATGTG 57.248 33.333 0.00 0.00 41.95 3.21
491 515 6.070897 ACGAAAAATGTGACATCAATGTGA 57.929 33.333 0.00 0.00 41.95 3.58
492 516 6.680810 ACGAAAAATGTGACATCAATGTGAT 58.319 32.000 0.00 0.00 41.95 3.06
493 517 7.815641 ACGAAAAATGTGACATCAATGTGATA 58.184 30.769 0.00 0.00 41.95 2.15
494 518 8.296000 ACGAAAAATGTGACATCAATGTGATAA 58.704 29.630 0.00 0.00 41.95 1.75
495 519 9.292846 CGAAAAATGTGACATCAATGTGATAAT 57.707 29.630 0.00 0.00 41.95 1.28
497 521 8.936070 AAAATGTGACATCAATGTGATAATGG 57.064 30.769 0.00 0.00 41.95 3.16
498 522 6.644248 ATGTGACATCAATGTGATAATGGG 57.356 37.500 0.00 0.00 41.95 4.00
499 523 4.338964 TGTGACATCAATGTGATAATGGGC 59.661 41.667 0.00 0.00 41.95 5.36
500 524 3.890756 TGACATCAATGTGATAATGGGCC 59.109 43.478 0.00 0.00 41.95 5.80
501 525 3.890756 GACATCAATGTGATAATGGGCCA 59.109 43.478 9.61 9.61 41.95 5.36
502 526 4.288398 ACATCAATGTGATAATGGGCCAA 58.712 39.130 11.89 0.00 40.03 4.52
503 527 4.715792 ACATCAATGTGATAATGGGCCAAA 59.284 37.500 11.89 1.34 40.03 3.28
504 528 5.367352 ACATCAATGTGATAATGGGCCAAAT 59.633 36.000 11.89 7.49 40.03 2.32
505 529 5.534207 TCAATGTGATAATGGGCCAAATC 57.466 39.130 11.89 17.28 0.00 2.17
506 530 5.210430 TCAATGTGATAATGGGCCAAATCT 58.790 37.500 24.45 9.19 0.00 2.40
507 531 6.372104 TCAATGTGATAATGGGCCAAATCTA 58.628 36.000 24.45 17.05 0.00 1.98
508 532 6.838090 TCAATGTGATAATGGGCCAAATCTAA 59.162 34.615 24.45 16.42 0.00 2.10
509 533 7.344093 TCAATGTGATAATGGGCCAAATCTAAA 59.656 33.333 24.45 14.65 0.00 1.85
510 534 6.713762 TGTGATAATGGGCCAAATCTAAAG 57.286 37.500 24.45 0.00 0.00 1.85
511 535 5.068987 TGTGATAATGGGCCAAATCTAAAGC 59.931 40.000 24.45 14.04 0.00 3.51
512 536 4.588528 TGATAATGGGCCAAATCTAAAGCC 59.411 41.667 24.45 0.00 44.99 4.35
516 540 2.672961 GGCCAAATCTAAAGCCCAAC 57.327 50.000 0.00 0.00 39.60 3.77
517 541 2.179427 GGCCAAATCTAAAGCCCAACT 58.821 47.619 0.00 0.00 39.60 3.16
518 542 2.567169 GGCCAAATCTAAAGCCCAACTT 59.433 45.455 0.00 0.00 41.70 2.66
519 543 3.588955 GCCAAATCTAAAGCCCAACTTG 58.411 45.455 0.00 0.00 39.09 3.16
520 544 3.006859 GCCAAATCTAAAGCCCAACTTGT 59.993 43.478 0.00 0.00 39.09 3.16
521 545 4.559153 CCAAATCTAAAGCCCAACTTGTG 58.441 43.478 0.00 0.00 39.09 3.33
522 546 4.039124 CCAAATCTAAAGCCCAACTTGTGT 59.961 41.667 0.00 0.00 39.09 3.72
523 547 5.453198 CCAAATCTAAAGCCCAACTTGTGTT 60.453 40.000 0.00 0.00 39.09 3.32
524 548 6.239176 CCAAATCTAAAGCCCAACTTGTGTTA 60.239 38.462 0.00 0.00 39.09 2.41
525 549 7.378181 CAAATCTAAAGCCCAACTTGTGTTAT 58.622 34.615 0.00 0.00 39.09 1.89
526 550 5.957842 TCTAAAGCCCAACTTGTGTTATG 57.042 39.130 0.00 0.00 39.09 1.90
527 551 5.381757 TCTAAAGCCCAACTTGTGTTATGT 58.618 37.500 0.00 0.00 39.09 2.29
528 552 6.535540 TCTAAAGCCCAACTTGTGTTATGTA 58.464 36.000 0.00 0.00 39.09 2.29
529 553 5.447624 AAAGCCCAACTTGTGTTATGTAC 57.552 39.130 0.00 0.00 39.09 2.90
530 554 4.367039 AGCCCAACTTGTGTTATGTACT 57.633 40.909 0.00 0.00 34.60 2.73
531 555 5.492855 AGCCCAACTTGTGTTATGTACTA 57.507 39.130 0.00 0.00 34.60 1.82
532 556 6.062258 AGCCCAACTTGTGTTATGTACTAT 57.938 37.500 0.00 0.00 34.60 2.12
533 557 6.481643 AGCCCAACTTGTGTTATGTACTATT 58.518 36.000 0.00 0.00 34.60 1.73
534 558 6.946009 AGCCCAACTTGTGTTATGTACTATTT 59.054 34.615 0.00 0.00 34.60 1.40
535 559 8.104566 AGCCCAACTTGTGTTATGTACTATTTA 58.895 33.333 0.00 0.00 34.60 1.40
536 560 8.395633 GCCCAACTTGTGTTATGTACTATTTAG 58.604 37.037 0.00 0.00 34.60 1.85
537 561 9.444600 CCCAACTTGTGTTATGTACTATTTAGT 57.555 33.333 0.00 0.00 36.27 2.24
541 565 9.350357 ACTTGTGTTATGTACTATTTAGTGACG 57.650 33.333 0.45 0.00 37.10 4.35
542 566 9.563898 CTTGTGTTATGTACTATTTAGTGACGA 57.436 33.333 0.45 0.00 37.10 4.20
543 567 9.911138 TTGTGTTATGTACTATTTAGTGACGAA 57.089 29.630 0.45 0.00 37.10 3.85
550 574 9.647797 ATGTACTATTTAGTGACGAATTTGTCA 57.352 29.630 22.25 22.25 46.15 3.58
560 584 6.804534 TGACGAATTTGTCATTTTTGTGTC 57.195 33.333 22.25 0.00 43.62 3.67
561 585 6.325596 TGACGAATTTGTCATTTTTGTGTCA 58.674 32.000 22.25 0.00 43.62 3.58
562 586 6.252441 TGACGAATTTGTCATTTTTGTGTCAC 59.748 34.615 22.25 0.00 43.62 3.67
563 587 5.229052 ACGAATTTGTCATTTTTGTGTCACG 59.771 36.000 0.00 0.00 0.00 4.35
564 588 5.453909 CGAATTTGTCATTTTTGTGTCACGA 59.546 36.000 0.00 0.00 0.00 4.35
565 589 6.344157 CGAATTTGTCATTTTTGTGTCACGAG 60.344 38.462 0.00 0.00 0.00 4.18
566 590 3.332761 TGTCATTTTTGTGTCACGAGC 57.667 42.857 0.00 0.00 0.00 5.03
567 591 2.942376 TGTCATTTTTGTGTCACGAGCT 59.058 40.909 0.00 0.00 0.00 4.09
568 592 4.123506 TGTCATTTTTGTGTCACGAGCTA 58.876 39.130 0.00 0.00 0.00 3.32
569 593 4.754618 TGTCATTTTTGTGTCACGAGCTAT 59.245 37.500 0.00 0.00 0.00 2.97
570 594 5.082059 GTCATTTTTGTGTCACGAGCTATG 58.918 41.667 0.00 2.51 0.00 2.23
571 595 4.754618 TCATTTTTGTGTCACGAGCTATGT 59.245 37.500 0.00 0.00 0.00 2.29
572 596 5.238432 TCATTTTTGTGTCACGAGCTATGTT 59.762 36.000 0.00 0.00 0.00 2.71
573 597 5.493133 TTTTTGTGTCACGAGCTATGTTT 57.507 34.783 0.00 0.00 0.00 2.83
574 598 5.493133 TTTTGTGTCACGAGCTATGTTTT 57.507 34.783 0.00 0.00 0.00 2.43
575 599 4.466567 TTGTGTCACGAGCTATGTTTTG 57.533 40.909 0.00 0.00 0.00 2.44
576 600 3.723260 TGTGTCACGAGCTATGTTTTGA 58.277 40.909 0.00 0.00 0.00 2.69
577 601 4.123506 TGTGTCACGAGCTATGTTTTGAA 58.876 39.130 0.00 0.00 0.00 2.69
578 602 4.754618 TGTGTCACGAGCTATGTTTTGAAT 59.245 37.500 0.00 0.00 0.00 2.57
579 603 5.238432 TGTGTCACGAGCTATGTTTTGAATT 59.762 36.000 0.00 0.00 0.00 2.17
580 604 6.142817 GTGTCACGAGCTATGTTTTGAATTT 58.857 36.000 0.00 0.00 0.00 1.82
581 605 6.636850 GTGTCACGAGCTATGTTTTGAATTTT 59.363 34.615 0.00 0.00 0.00 1.82
582 606 6.636447 TGTCACGAGCTATGTTTTGAATTTTG 59.364 34.615 0.00 0.00 0.00 2.44
583 607 6.636850 GTCACGAGCTATGTTTTGAATTTTGT 59.363 34.615 0.00 0.00 0.00 2.83
584 608 6.636447 TCACGAGCTATGTTTTGAATTTTGTG 59.364 34.615 0.00 0.00 0.00 3.33
585 609 6.636447 CACGAGCTATGTTTTGAATTTTGTGA 59.364 34.615 0.00 0.00 0.00 3.58
586 610 6.636850 ACGAGCTATGTTTTGAATTTTGTGAC 59.363 34.615 0.00 0.00 0.00 3.67
587 611 6.636447 CGAGCTATGTTTTGAATTTTGTGACA 59.364 34.615 0.00 0.00 0.00 3.58
588 612 7.167302 CGAGCTATGTTTTGAATTTTGTGACAA 59.833 33.333 0.00 0.00 0.00 3.18
589 613 8.130307 AGCTATGTTTTGAATTTTGTGACAAC 57.870 30.769 0.00 0.00 0.00 3.32
590 614 7.763528 AGCTATGTTTTGAATTTTGTGACAACA 59.236 29.630 0.00 0.00 0.00 3.33
591 615 8.550376 GCTATGTTTTGAATTTTGTGACAACAT 58.450 29.630 0.00 0.00 35.83 2.71
666 690 9.817365 CATTTGAAAATATGCTAAGATAGTCCG 57.183 33.333 0.00 0.00 0.00 4.79
667 691 7.421530 TTGAAAATATGCTAAGATAGTCCGC 57.578 36.000 0.00 0.00 0.00 5.54
668 692 6.759272 TGAAAATATGCTAAGATAGTCCGCT 58.241 36.000 0.00 0.00 0.00 5.52
669 693 6.646653 TGAAAATATGCTAAGATAGTCCGCTG 59.353 38.462 0.00 0.00 0.00 5.18
670 694 2.447244 ATGCTAAGATAGTCCGCTGC 57.553 50.000 0.00 0.00 0.00 5.25
671 695 1.111277 TGCTAAGATAGTCCGCTGCA 58.889 50.000 0.00 0.00 0.00 4.41
672 696 1.202417 TGCTAAGATAGTCCGCTGCAC 60.202 52.381 0.00 0.00 0.00 4.57
673 697 1.870167 GCTAAGATAGTCCGCTGCACC 60.870 57.143 0.00 0.00 0.00 5.01
674 698 0.384309 TAAGATAGTCCGCTGCACCG 59.616 55.000 0.00 0.00 0.00 4.94
675 699 1.605058 AAGATAGTCCGCTGCACCGT 61.605 55.000 0.00 0.00 0.00 4.83
676 700 0.750546 AGATAGTCCGCTGCACCGTA 60.751 55.000 0.00 0.00 0.00 4.02
677 701 0.317938 GATAGTCCGCTGCACCGTAG 60.318 60.000 0.00 0.00 0.00 3.51
678 702 2.351336 ATAGTCCGCTGCACCGTAGC 62.351 60.000 0.00 0.00 37.80 3.58
679 703 4.735132 GTCCGCTGCACCGTAGCA 62.735 66.667 0.00 0.00 41.18 3.49
680 704 4.735132 TCCGCTGCACCGTAGCAC 62.735 66.667 0.00 0.00 41.18 4.40
682 706 3.041351 CGCTGCACCGTAGCACAA 61.041 61.111 0.00 0.00 41.18 3.33
683 707 2.863153 GCTGCACCGTAGCACAAG 59.137 61.111 0.00 0.00 40.11 3.16
684 708 2.863153 CTGCACCGTAGCACAAGC 59.137 61.111 0.00 0.00 40.11 4.01
695 719 3.716006 CACAAGCTCCCGTGCACG 61.716 66.667 31.77 31.77 39.44 5.34
714 738 3.014604 CGGGATACGTCCTCAGATTTC 57.985 52.381 0.00 0.00 44.44 2.17
715 739 2.604855 CGGGATACGTCCTCAGATTTCG 60.605 54.545 0.00 0.00 44.44 3.46
716 740 2.288273 GGGATACGTCCTCAGATTTCGG 60.288 54.545 0.00 0.00 44.44 4.30
717 741 2.288273 GGATACGTCCTCAGATTTCGGG 60.288 54.545 0.00 0.00 41.60 5.14
722 746 1.137282 GTCCTCAGATTTCGGGAGTCC 59.863 57.143 0.00 0.00 0.00 3.85
727 751 4.502259 CCTCAGATTTCGGGAGTCCAATAG 60.502 50.000 12.30 0.00 0.00 1.73
728 752 4.030913 TCAGATTTCGGGAGTCCAATAGT 58.969 43.478 12.30 0.00 0.00 2.12
808 1657 0.738975 TTACAGCCAGACTCGGATCG 59.261 55.000 0.00 0.00 0.00 3.69
852 1701 5.356426 TCAACACATGTAATACATCTCCGG 58.644 41.667 2.41 0.00 36.53 5.14
853 1702 5.128008 TCAACACATGTAATACATCTCCGGA 59.872 40.000 2.93 2.93 36.53 5.14
854 1703 5.808366 ACACATGTAATACATCTCCGGAT 57.192 39.130 3.57 0.00 36.53 4.18
855 1704 6.911250 ACACATGTAATACATCTCCGGATA 57.089 37.500 3.57 0.00 36.53 2.59
856 1705 7.482169 ACACATGTAATACATCTCCGGATAT 57.518 36.000 3.57 0.00 36.53 1.63
857 1706 8.589701 ACACATGTAATACATCTCCGGATATA 57.410 34.615 3.57 0.00 36.53 0.86
858 1707 8.467598 ACACATGTAATACATCTCCGGATATAC 58.532 37.037 3.57 0.00 36.53 1.47
859 1708 8.687242 CACATGTAATACATCTCCGGATATACT 58.313 37.037 3.57 0.00 36.53 2.12
860 1709 9.256228 ACATGTAATACATCTCCGGATATACTT 57.744 33.333 3.57 0.53 36.53 2.24
962 1819 2.134201 GGCAAATAATAGCCGGCAAC 57.866 50.000 31.54 6.15 41.70 4.17
964 1821 2.459934 GCAAATAATAGCCGGCAACAC 58.540 47.619 31.54 3.67 0.00 3.32
1033 1890 1.227664 CTCCGCCTCCTACTCCTCA 59.772 63.158 0.00 0.00 0.00 3.86
1038 1895 2.900546 CCGCCTCCTACTCCTCATATTT 59.099 50.000 0.00 0.00 0.00 1.40
1077 1934 2.400158 CGTCTTCTCCGTCTCCGCT 61.400 63.158 0.00 0.00 0.00 5.52
1099 1956 4.400109 GCGACGCCACTGACGAGA 62.400 66.667 9.14 0.00 0.00 4.04
1100 1957 2.502080 CGACGCCACTGACGAGAC 60.502 66.667 0.00 0.00 0.00 3.36
1101 1958 2.502080 GACGCCACTGACGAGACG 60.502 66.667 0.00 0.00 0.00 4.18
1102 1959 3.948086 GACGCCACTGACGAGACGG 62.948 68.421 0.00 0.00 0.00 4.79
1103 1960 4.039357 CGCCACTGACGAGACGGT 62.039 66.667 0.00 0.00 0.00 4.83
1104 1961 2.430921 GCCACTGACGAGACGGTG 60.431 66.667 7.39 7.39 44.06 4.94
1106 1963 3.039988 CACTGACGAGACGGTGGT 58.960 61.111 6.63 0.00 41.70 4.16
1107 1964 1.081376 CACTGACGAGACGGTGGTC 60.081 63.158 6.63 0.00 41.70 4.02
1573 2439 4.865761 GCGTGGCGGCGATGTAGA 62.866 66.667 12.98 0.00 0.00 2.59
1597 2463 1.199097 GGGCAGTTGGTTACGTGATTG 59.801 52.381 0.00 0.00 0.00 2.67
1652 2518 2.319025 ATTTGGTTTCCGGGATTGGT 57.681 45.000 0.00 0.00 0.00 3.67
1689 2560 2.742053 ACGCGATGCTGTGAATTAGTTT 59.258 40.909 15.93 0.00 0.00 2.66
1811 2682 9.481340 GCCTTATTTTTGTGATTCTTCTTCTTT 57.519 29.630 0.00 0.00 0.00 2.52
1821 2692 9.177608 TGTGATTCTTCTTCTTTTTCTTCTTCA 57.822 29.630 0.00 0.00 0.00 3.02
1822 2693 9.444534 GTGATTCTTCTTCTTTTTCTTCTTCAC 57.555 33.333 0.00 0.00 0.00 3.18
1860 2741 7.272978 TGTCATATTTTGCTTAGTACTCCCTC 58.727 38.462 0.00 0.00 0.00 4.30
1879 2760 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
1886 2767 8.004344 CCGTCTCATAATATAAGAGCGTTTTTG 58.996 37.037 0.00 0.00 31.69 2.44
1888 2769 9.851043 GTCTCATAATATAAGAGCGTTTTTGAC 57.149 33.333 0.00 0.00 0.00 3.18
2013 2913 0.247736 ATGAGTGGTCGAGCTTGTCC 59.752 55.000 16.64 10.10 0.00 4.02
2086 2986 3.059352 AGGAGTTTTCTAAGCGCACAT 57.941 42.857 11.47 0.00 0.00 3.21
2099 2999 2.300967 GCACATCACCCCTCCTCCA 61.301 63.158 0.00 0.00 0.00 3.86
2101 3001 0.911525 CACATCACCCCTCCTCCACT 60.912 60.000 0.00 0.00 0.00 4.00
2104 3004 3.721706 CACCCCTCCTCCACTGGC 61.722 72.222 0.00 0.00 0.00 4.85
2110 3010 1.915266 CTCCTCCACTGGCAGGTCA 60.915 63.158 20.34 0.14 0.00 4.02
2113 3013 0.679002 CCTCCACTGGCAGGTCATTG 60.679 60.000 20.34 7.27 0.00 2.82
2160 3060 1.255667 GCGGAGGTTCCTGTCTACCA 61.256 60.000 0.00 0.00 36.87 3.25
2195 3221 0.104672 TCCCCAACTCCTCCTTGACA 60.105 55.000 0.00 0.00 0.00 3.58
2217 3243 3.668641 CGTCCAATTTGTACGCCAC 57.331 52.632 1.48 0.00 0.00 5.01
2225 3251 2.914695 TTTGTACGCCACTGTTAGGT 57.085 45.000 0.00 0.00 0.00 3.08
2226 3252 2.157834 TTGTACGCCACTGTTAGGTG 57.842 50.000 0.00 0.00 42.31 4.00
2235 3261 1.203994 CACTGTTAGGTGGAGGGTACG 59.796 57.143 0.00 0.00 33.95 3.67
2246 3272 3.468140 GGGTACGGTGGCTCCTCC 61.468 72.222 3.83 3.81 0.00 4.30
2252 3278 1.078848 CGGTGGCTCCTCCTTGAAG 60.079 63.158 3.83 0.00 35.26 3.02
2279 3305 1.969589 GATTTGGACGCCGGGTTGT 60.970 57.895 2.18 0.00 0.00 3.32
2330 3357 3.871006 TCGATCAATGATAGGCACAACAC 59.129 43.478 0.00 0.00 0.00 3.32
2365 3392 1.423395 CCTGAACTTGTCGTCTGAGC 58.577 55.000 0.00 0.00 0.00 4.26
2402 3429 0.957395 AACGATGGCTGCTGGTTCTG 60.957 55.000 0.00 0.00 0.00 3.02
2412 3439 2.414481 CTGCTGGTTCTGATCGTTCAAG 59.586 50.000 0.00 0.00 0.00 3.02
2427 3454 3.852536 CGTTCAAGATCGTCTACACCTTC 59.147 47.826 0.00 0.00 0.00 3.46
2441 3468 1.477685 ACCTTCACGGTGGACGGAAT 61.478 55.000 8.50 0.00 46.80 3.01
2452 3479 0.323629 GGACGGAATTGTGGAGGACA 59.676 55.000 0.00 0.00 0.00 4.02
2461 3488 0.834261 TGTGGAGGACAACGATCCCA 60.834 55.000 0.00 0.00 39.91 4.37
2462 3489 0.108138 GTGGAGGACAACGATCCCAG 60.108 60.000 0.00 0.00 39.91 4.45
2463 3490 0.544357 TGGAGGACAACGATCCCAGT 60.544 55.000 0.00 0.00 39.91 4.00
2501 3528 2.610532 GAACTGGATCCGAAGCCCCC 62.611 65.000 7.39 0.00 0.00 5.40
2507 3534 0.393448 GATCCGAAGCCCCCTTAGAC 59.607 60.000 0.00 0.00 0.00 2.59
2518 3545 1.133262 CCCCTTAGACCCGTCATCCTA 60.133 57.143 0.00 0.00 0.00 2.94
2520 3547 2.424523 CCCTTAGACCCGTCATCCTAGT 60.425 54.545 0.00 0.00 0.00 2.57
2522 3549 1.688772 TAGACCCGTCATCCTAGTGC 58.311 55.000 0.00 0.00 0.00 4.40
2536 3563 2.791396 TAGTGCGACGACGGCTTGTC 62.791 60.000 9.67 0.26 44.53 3.18
2568 3595 2.182791 CGAGCAGCATCACGTCCT 59.817 61.111 0.00 0.00 0.00 3.85
2569 3596 1.446792 CGAGCAGCATCACGTCCTT 60.447 57.895 0.00 0.00 0.00 3.36
2570 3597 1.690283 CGAGCAGCATCACGTCCTTG 61.690 60.000 0.00 0.00 0.00 3.61
2571 3598 0.671781 GAGCAGCATCACGTCCTTGT 60.672 55.000 0.00 0.00 0.00 3.16
2572 3599 0.671781 AGCAGCATCACGTCCTTGTC 60.672 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.360475 AAGGAAGGCGCAAGGAGC 60.360 61.111 10.83 0.00 40.87 4.70
16 17 0.537188 TAGAAGGAAGGCGCAAGGAG 59.463 55.000 10.83 0.00 38.28 3.69
45 46 0.755698 GAGGTCGCTCCCACTATGGA 60.756 60.000 0.00 0.00 40.96 3.41
46 47 1.742768 GAGGTCGCTCCCACTATGG 59.257 63.158 0.00 0.00 37.25 2.74
47 48 0.757188 AGGAGGTCGCTCCCACTATG 60.757 60.000 5.55 0.00 44.37 2.23
49 50 1.076923 GAGGAGGTCGCTCCCACTA 60.077 63.158 5.55 0.00 44.37 2.74
50 51 1.572689 TAGAGGAGGTCGCTCCCACT 61.573 60.000 5.55 8.07 44.37 4.00
51 52 0.683504 TTAGAGGAGGTCGCTCCCAC 60.684 60.000 5.55 1.70 44.37 4.61
52 53 0.395862 CTTAGAGGAGGTCGCTCCCA 60.396 60.000 5.55 0.00 44.37 4.37
53 54 1.110518 CCTTAGAGGAGGTCGCTCCC 61.111 65.000 5.55 0.00 44.37 4.30
97 99 6.204882 GGCACATGTTATCTACATTAGGGTTC 59.795 42.308 0.00 0.00 45.19 3.62
107 109 5.556382 CGTTTGATCGGCACATGTTATCTAC 60.556 44.000 0.00 0.68 0.00 2.59
115 117 2.330231 AAACGTTTGATCGGCACATG 57.670 45.000 13.81 0.00 34.94 3.21
116 118 2.809119 TGTAAACGTTTGATCGGCACAT 59.191 40.909 23.46 0.00 34.94 3.21
145 147 1.539827 GAATGCTTAGCCACCACGTTT 59.460 47.619 0.29 0.00 0.00 3.60
159 161 3.385755 GCCACCCTTGATAATTGAATGCT 59.614 43.478 0.00 0.00 0.00 3.79
160 162 3.721035 GCCACCCTTGATAATTGAATGC 58.279 45.455 0.00 0.00 0.00 3.56
161 163 3.631686 TCGCCACCCTTGATAATTGAATG 59.368 43.478 0.00 0.00 0.00 2.67
162 164 3.885297 CTCGCCACCCTTGATAATTGAAT 59.115 43.478 0.00 0.00 0.00 2.57
164 166 2.917933 CTCGCCACCCTTGATAATTGA 58.082 47.619 0.00 0.00 0.00 2.57
165 167 1.334869 GCTCGCCACCCTTGATAATTG 59.665 52.381 0.00 0.00 0.00 2.32
167 169 0.839946 AGCTCGCCACCCTTGATAAT 59.160 50.000 0.00 0.00 0.00 1.28
168 170 0.178068 GAGCTCGCCACCCTTGATAA 59.822 55.000 0.00 0.00 0.00 1.75
179 181 1.576356 CAAGGACAATAGAGCTCGCC 58.424 55.000 8.37 4.53 0.00 5.54
214 216 0.749818 TCCAAAACACCTGCTTCGCA 60.750 50.000 0.00 0.00 36.92 5.10
215 217 0.383949 TTCCAAAACACCTGCTTCGC 59.616 50.000 0.00 0.00 0.00 4.70
216 218 1.676006 ACTTCCAAAACACCTGCTTCG 59.324 47.619 0.00 0.00 0.00 3.79
217 219 4.518970 TCATACTTCCAAAACACCTGCTTC 59.481 41.667 0.00 0.00 0.00 3.86
218 220 4.469657 TCATACTTCCAAAACACCTGCTT 58.530 39.130 0.00 0.00 0.00 3.91
219 221 4.098914 TCATACTTCCAAAACACCTGCT 57.901 40.909 0.00 0.00 0.00 4.24
220 222 4.380867 CCATCATACTTCCAAAACACCTGC 60.381 45.833 0.00 0.00 0.00 4.85
221 223 4.380867 GCCATCATACTTCCAAAACACCTG 60.381 45.833 0.00 0.00 0.00 4.00
222 224 3.763897 GCCATCATACTTCCAAAACACCT 59.236 43.478 0.00 0.00 0.00 4.00
223 225 3.427503 CGCCATCATACTTCCAAAACACC 60.428 47.826 0.00 0.00 0.00 4.16
224 226 3.190535 ACGCCATCATACTTCCAAAACAC 59.809 43.478 0.00 0.00 0.00 3.32
225 227 3.417101 ACGCCATCATACTTCCAAAACA 58.583 40.909 0.00 0.00 0.00 2.83
226 228 3.181500 GGACGCCATCATACTTCCAAAAC 60.181 47.826 0.00 0.00 0.00 2.43
227 229 3.013921 GGACGCCATCATACTTCCAAAA 58.986 45.455 0.00 0.00 0.00 2.44
228 230 2.238646 AGGACGCCATCATACTTCCAAA 59.761 45.455 0.00 0.00 0.00 3.28
229 231 1.837439 AGGACGCCATCATACTTCCAA 59.163 47.619 0.00 0.00 0.00 3.53
230 232 1.496060 AGGACGCCATCATACTTCCA 58.504 50.000 0.00 0.00 0.00 3.53
231 233 2.213499 CAAGGACGCCATCATACTTCC 58.787 52.381 0.00 0.00 0.00 3.46
259 261 2.465860 TGGTAATCGGTGACAACAGG 57.534 50.000 0.00 0.00 0.00 4.00
311 318 4.201851 CGAAATCTCTCATGCAAACCGAAT 60.202 41.667 0.00 0.00 0.00 3.34
312 319 3.125146 CGAAATCTCTCATGCAAACCGAA 59.875 43.478 0.00 0.00 0.00 4.30
314 321 2.223112 CCGAAATCTCTCATGCAAACCG 60.223 50.000 0.00 0.00 0.00 4.44
337 361 2.541178 CCGGTGCACTAGATACGTTCTC 60.541 54.545 17.98 0.00 35.79 2.87
338 362 1.404391 CCGGTGCACTAGATACGTTCT 59.596 52.381 17.98 0.00 38.57 3.01
339 363 1.402968 TCCGGTGCACTAGATACGTTC 59.597 52.381 17.98 0.00 0.00 3.95
340 364 1.404391 CTCCGGTGCACTAGATACGTT 59.596 52.381 17.98 0.00 0.00 3.99
341 365 1.022735 CTCCGGTGCACTAGATACGT 58.977 55.000 17.98 0.00 0.00 3.57
342 366 1.022735 ACTCCGGTGCACTAGATACG 58.977 55.000 17.98 10.34 0.00 3.06
343 367 2.541178 CGAACTCCGGTGCACTAGATAC 60.541 54.545 17.98 0.00 33.91 2.24
344 368 1.674441 CGAACTCCGGTGCACTAGATA 59.326 52.381 17.98 2.80 33.91 1.98
345 369 0.456221 CGAACTCCGGTGCACTAGAT 59.544 55.000 17.98 6.83 33.91 1.98
346 370 0.892358 ACGAACTCCGGTGCACTAGA 60.892 55.000 17.98 12.60 43.93 2.43
347 371 0.732880 CACGAACTCCGGTGCACTAG 60.733 60.000 17.98 13.97 43.93 2.57
348 372 1.287815 CACGAACTCCGGTGCACTA 59.712 57.895 17.98 1.75 43.93 2.74
349 373 2.029073 CACGAACTCCGGTGCACT 59.971 61.111 17.98 0.00 43.93 4.40
350 374 2.279918 ACACGAACTCCGGTGCAC 60.280 61.111 8.80 8.80 43.93 4.57
351 375 2.279851 CACACGAACTCCGGTGCA 60.280 61.111 0.00 0.00 43.93 4.57
353 377 3.041940 GGCACACGAACTCCGGTG 61.042 66.667 0.00 0.00 43.93 4.94
354 378 3.542676 TGGCACACGAACTCCGGT 61.543 61.111 0.00 0.00 43.93 5.28
367 391 4.182433 TTCGGTGCACCAGTGGCA 62.182 61.111 34.16 6.72 39.32 4.92
368 392 3.660111 GTTCGGTGCACCAGTGGC 61.660 66.667 34.16 15.65 35.14 5.01
369 393 3.345808 CGTTCGGTGCACCAGTGG 61.346 66.667 34.16 18.65 35.14 4.00
370 394 4.012895 GCGTTCGGTGCACCAGTG 62.013 66.667 34.16 21.01 35.14 3.66
381 405 1.348276 TAATGTGTAACCGGCGTTCG 58.652 50.000 6.01 0.00 34.36 3.95
382 406 3.809918 TTTAATGTGTAACCGGCGTTC 57.190 42.857 6.01 0.00 34.36 3.95
383 407 4.564940 TTTTTAATGTGTAACCGGCGTT 57.435 36.364 6.01 2.92 34.36 4.84
384 408 4.023021 ACATTTTTAATGTGTAACCGGCGT 60.023 37.500 6.01 0.00 34.36 5.68
385 409 4.477780 ACATTTTTAATGTGTAACCGGCG 58.522 39.130 0.00 0.00 34.36 6.46
386 410 5.921408 TGAACATTTTTAATGTGTAACCGGC 59.079 36.000 0.00 0.00 34.36 6.13
387 411 7.932120 TTGAACATTTTTAATGTGTAACCGG 57.068 32.000 0.00 0.00 34.36 5.28
394 418 9.367717 CGTGGATTTTTGAACATTTTTAATGTG 57.632 29.630 5.86 0.00 31.80 3.21
395 419 9.319143 TCGTGGATTTTTGAACATTTTTAATGT 57.681 25.926 0.00 0.00 0.00 2.71
400 424 9.553418 CTTTTTCGTGGATTTTTGAACATTTTT 57.447 25.926 0.00 0.00 0.00 1.94
401 425 8.940952 TCTTTTTCGTGGATTTTTGAACATTTT 58.059 25.926 0.00 0.00 0.00 1.82
402 426 8.485976 TCTTTTTCGTGGATTTTTGAACATTT 57.514 26.923 0.00 0.00 0.00 2.32
403 427 8.485976 TTCTTTTTCGTGGATTTTTGAACATT 57.514 26.923 0.00 0.00 0.00 2.71
404 428 8.485976 TTTCTTTTTCGTGGATTTTTGAACAT 57.514 26.923 0.00 0.00 0.00 2.71
405 429 7.891183 TTTCTTTTTCGTGGATTTTTGAACA 57.109 28.000 0.00 0.00 0.00 3.18
432 456 8.973378 TCGAGCAATGTTTCGAATTTTAATTTT 58.027 25.926 0.00 0.00 42.27 1.82
433 457 8.514136 TCGAGCAATGTTTCGAATTTTAATTT 57.486 26.923 0.00 0.00 42.27 1.82
434 458 8.020819 TCTCGAGCAATGTTTCGAATTTTAATT 58.979 29.630 7.81 0.00 44.25 1.40
435 459 7.526608 TCTCGAGCAATGTTTCGAATTTTAAT 58.473 30.769 7.81 0.00 44.25 1.40
436 460 6.893759 TCTCGAGCAATGTTTCGAATTTTAA 58.106 32.000 7.81 0.00 44.25 1.52
437 461 6.474819 TCTCGAGCAATGTTTCGAATTTTA 57.525 33.333 7.81 0.00 44.25 1.52
438 462 5.356882 TCTCGAGCAATGTTTCGAATTTT 57.643 34.783 7.81 0.00 44.25 1.82
439 463 5.551760 ATCTCGAGCAATGTTTCGAATTT 57.448 34.783 7.81 0.00 44.25 1.82
440 464 5.580691 TGTATCTCGAGCAATGTTTCGAATT 59.419 36.000 7.81 6.31 44.25 2.17
441 465 5.109210 TGTATCTCGAGCAATGTTTCGAAT 58.891 37.500 7.81 10.43 44.25 3.34
442 466 4.490743 TGTATCTCGAGCAATGTTTCGAA 58.509 39.130 7.81 0.00 44.25 3.71
443 467 4.104696 TGTATCTCGAGCAATGTTTCGA 57.895 40.909 7.81 10.47 42.91 3.71
444 468 4.840401 TTGTATCTCGAGCAATGTTTCG 57.160 40.909 7.81 3.56 38.13 3.46
445 469 6.031417 CGTTTTTGTATCTCGAGCAATGTTTC 59.969 38.462 7.81 0.00 0.00 2.78
446 470 5.851177 CGTTTTTGTATCTCGAGCAATGTTT 59.149 36.000 7.81 0.00 0.00 2.83
447 471 5.178623 TCGTTTTTGTATCTCGAGCAATGTT 59.821 36.000 7.81 0.00 0.00 2.71
448 472 4.688879 TCGTTTTTGTATCTCGAGCAATGT 59.311 37.500 7.81 0.00 0.00 2.71
449 473 5.203358 TCGTTTTTGTATCTCGAGCAATG 57.797 39.130 7.81 0.00 0.00 2.82
450 474 5.856126 TTCGTTTTTGTATCTCGAGCAAT 57.144 34.783 7.81 0.00 32.39 3.56
451 475 5.660629 TTTCGTTTTTGTATCTCGAGCAA 57.339 34.783 7.81 3.53 32.39 3.91
452 476 5.660629 TTTTCGTTTTTGTATCTCGAGCA 57.339 34.783 7.81 0.00 32.39 4.26
453 477 6.577427 ACATTTTTCGTTTTTGTATCTCGAGC 59.423 34.615 7.81 0.00 32.39 5.03
454 478 7.796660 TCACATTTTTCGTTTTTGTATCTCGAG 59.203 33.333 5.93 5.93 32.39 4.04
455 479 7.584847 GTCACATTTTTCGTTTTTGTATCTCGA 59.415 33.333 0.00 0.00 0.00 4.04
456 480 7.374754 TGTCACATTTTTCGTTTTTGTATCTCG 59.625 33.333 0.00 0.00 0.00 4.04
457 481 8.555166 TGTCACATTTTTCGTTTTTGTATCTC 57.445 30.769 0.00 0.00 0.00 2.75
458 482 9.180678 GATGTCACATTTTTCGTTTTTGTATCT 57.819 29.630 0.00 0.00 0.00 1.98
459 483 8.963130 TGATGTCACATTTTTCGTTTTTGTATC 58.037 29.630 0.00 0.00 0.00 2.24
460 484 8.864069 TGATGTCACATTTTTCGTTTTTGTAT 57.136 26.923 0.00 0.00 0.00 2.29
461 485 8.689251 TTGATGTCACATTTTTCGTTTTTGTA 57.311 26.923 0.00 0.00 0.00 2.41
462 486 7.588143 TTGATGTCACATTTTTCGTTTTTGT 57.412 28.000 0.00 0.00 0.00 2.83
463 487 8.115520 ACATTGATGTCACATTTTTCGTTTTTG 58.884 29.630 0.00 0.00 35.87 2.44
464 488 8.115520 CACATTGATGTCACATTTTTCGTTTTT 58.884 29.630 0.00 0.00 39.39 1.94
465 489 7.490725 TCACATTGATGTCACATTTTTCGTTTT 59.509 29.630 0.00 0.00 39.39 2.43
466 490 6.977502 TCACATTGATGTCACATTTTTCGTTT 59.022 30.769 0.00 0.00 39.39 3.60
467 491 6.502652 TCACATTGATGTCACATTTTTCGTT 58.497 32.000 0.00 0.00 39.39 3.85
468 492 6.070897 TCACATTGATGTCACATTTTTCGT 57.929 33.333 0.00 0.00 39.39 3.85
469 493 8.672214 TTATCACATTGATGTCACATTTTTCG 57.328 30.769 0.00 0.00 39.39 3.46
471 495 9.373603 CCATTATCACATTGATGTCACATTTTT 57.626 29.630 0.00 0.00 39.39 1.94
472 496 7.982919 CCCATTATCACATTGATGTCACATTTT 59.017 33.333 0.00 0.00 39.39 1.82
473 497 7.494211 CCCATTATCACATTGATGTCACATTT 58.506 34.615 0.00 0.00 39.39 2.32
474 498 6.461927 GCCCATTATCACATTGATGTCACATT 60.462 38.462 0.00 0.00 39.39 2.71
475 499 5.010314 GCCCATTATCACATTGATGTCACAT 59.990 40.000 0.00 0.00 39.39 3.21
476 500 4.338964 GCCCATTATCACATTGATGTCACA 59.661 41.667 0.00 0.00 39.39 3.58
477 501 4.261741 GGCCCATTATCACATTGATGTCAC 60.262 45.833 0.00 0.00 39.39 3.67
478 502 3.890756 GGCCCATTATCACATTGATGTCA 59.109 43.478 0.00 0.00 39.39 3.58
479 503 3.890756 TGGCCCATTATCACATTGATGTC 59.109 43.478 0.00 0.00 39.39 3.06
480 504 3.913509 TGGCCCATTATCACATTGATGT 58.086 40.909 0.00 0.00 42.84 3.06
481 505 4.940905 TTGGCCCATTATCACATTGATG 57.059 40.909 0.00 0.00 37.70 3.07
482 506 5.842328 AGATTTGGCCCATTATCACATTGAT 59.158 36.000 0.00 0.00 40.72 2.57
483 507 5.210430 AGATTTGGCCCATTATCACATTGA 58.790 37.500 0.00 0.00 0.00 2.57
484 508 5.540400 AGATTTGGCCCATTATCACATTG 57.460 39.130 0.00 0.00 0.00 2.82
485 509 7.673641 TTTAGATTTGGCCCATTATCACATT 57.326 32.000 0.00 0.00 0.00 2.71
486 510 6.239402 GCTTTAGATTTGGCCCATTATCACAT 60.239 38.462 0.00 0.00 0.00 3.21
487 511 5.068987 GCTTTAGATTTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
488 512 5.509670 GGCTTTAGATTTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
489 513 4.588528 GGCTTTAGATTTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
490 514 5.139435 GGCTTTAGATTTGGCCCATTATC 57.861 43.478 0.00 0.00 38.77 1.75
497 521 2.179427 AGTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
498 522 3.006859 ACAAGTTGGGCTTTAGATTTGGC 59.993 43.478 7.96 0.00 34.69 4.52
499 523 4.039124 ACACAAGTTGGGCTTTAGATTTGG 59.961 41.667 4.63 0.00 34.69 3.28
500 524 5.200368 ACACAAGTTGGGCTTTAGATTTG 57.800 39.130 4.63 0.00 34.69 2.32
501 525 5.869649 AACACAAGTTGGGCTTTAGATTT 57.130 34.783 4.63 0.00 36.39 2.17
502 526 6.493458 ACATAACACAAGTTGGGCTTTAGATT 59.507 34.615 4.63 0.00 38.69 2.40
503 527 6.010219 ACATAACACAAGTTGGGCTTTAGAT 58.990 36.000 4.63 0.00 38.69 1.98
504 528 5.381757 ACATAACACAAGTTGGGCTTTAGA 58.618 37.500 4.63 0.00 38.69 2.10
505 529 5.705609 ACATAACACAAGTTGGGCTTTAG 57.294 39.130 4.63 0.00 38.69 1.85
506 530 6.300703 AGTACATAACACAAGTTGGGCTTTA 58.699 36.000 4.63 0.00 38.69 1.85
507 531 5.137551 AGTACATAACACAAGTTGGGCTTT 58.862 37.500 4.63 0.00 38.69 3.51
508 532 4.725490 AGTACATAACACAAGTTGGGCTT 58.275 39.130 4.63 1.74 38.69 4.35
509 533 4.367039 AGTACATAACACAAGTTGGGCT 57.633 40.909 4.63 0.00 38.69 5.19
510 534 6.753107 AATAGTACATAACACAAGTTGGGC 57.247 37.500 4.63 0.00 38.69 5.36
511 535 9.444600 ACTAAATAGTACATAACACAAGTTGGG 57.555 33.333 2.79 2.79 35.02 4.12
515 539 9.350357 CGTCACTAAATAGTACATAACACAAGT 57.650 33.333 0.00 0.00 34.13 3.16
516 540 9.563898 TCGTCACTAAATAGTACATAACACAAG 57.436 33.333 0.00 0.00 34.13 3.16
517 541 9.911138 TTCGTCACTAAATAGTACATAACACAA 57.089 29.630 0.00 0.00 34.13 3.33
524 548 9.647797 TGACAAATTCGTCACTAAATAGTACAT 57.352 29.630 0.00 0.00 40.94 2.29
538 562 6.557711 CGTGACACAAAAATGACAAATTCGTC 60.558 38.462 6.37 0.00 36.40 4.20
539 563 5.229052 CGTGACACAAAAATGACAAATTCGT 59.771 36.000 6.37 0.00 0.00 3.85
540 564 5.453909 TCGTGACACAAAAATGACAAATTCG 59.546 36.000 6.37 0.00 0.00 3.34
541 565 6.560251 GCTCGTGACACAAAAATGACAAATTC 60.560 38.462 6.37 0.00 0.00 2.17
542 566 5.231991 GCTCGTGACACAAAAATGACAAATT 59.768 36.000 6.37 0.00 0.00 1.82
543 567 4.739716 GCTCGTGACACAAAAATGACAAAT 59.260 37.500 6.37 0.00 0.00 2.32
544 568 4.101942 GCTCGTGACACAAAAATGACAAA 58.898 39.130 6.37 0.00 0.00 2.83
545 569 3.376859 AGCTCGTGACACAAAAATGACAA 59.623 39.130 6.37 0.00 0.00 3.18
546 570 2.942376 AGCTCGTGACACAAAAATGACA 59.058 40.909 6.37 0.00 0.00 3.58
547 571 3.609103 AGCTCGTGACACAAAAATGAC 57.391 42.857 6.37 0.00 0.00 3.06
548 572 4.754618 ACATAGCTCGTGACACAAAAATGA 59.245 37.500 6.37 0.00 0.00 2.57
549 573 5.034554 ACATAGCTCGTGACACAAAAATG 57.965 39.130 6.37 5.13 0.00 2.32
550 574 5.689383 AACATAGCTCGTGACACAAAAAT 57.311 34.783 6.37 0.00 0.00 1.82
551 575 5.493133 AAACATAGCTCGTGACACAAAAA 57.507 34.783 6.37 0.00 0.00 1.94
552 576 5.065346 TCAAAACATAGCTCGTGACACAAAA 59.935 36.000 6.37 0.00 0.00 2.44
553 577 4.572795 TCAAAACATAGCTCGTGACACAAA 59.427 37.500 6.37 0.00 0.00 2.83
554 578 4.123506 TCAAAACATAGCTCGTGACACAA 58.876 39.130 6.37 0.00 0.00 3.33
555 579 3.723260 TCAAAACATAGCTCGTGACACA 58.277 40.909 6.37 0.00 0.00 3.72
556 580 4.725556 TTCAAAACATAGCTCGTGACAC 57.274 40.909 6.07 0.00 0.00 3.67
557 581 5.940192 AATTCAAAACATAGCTCGTGACA 57.060 34.783 6.07 0.00 0.00 3.58
558 582 6.636850 ACAAAATTCAAAACATAGCTCGTGAC 59.363 34.615 6.07 0.00 0.00 3.67
559 583 6.636447 CACAAAATTCAAAACATAGCTCGTGA 59.364 34.615 6.07 0.00 0.00 4.35
560 584 6.636447 TCACAAAATTCAAAACATAGCTCGTG 59.364 34.615 0.00 0.00 0.00 4.35
561 585 6.636850 GTCACAAAATTCAAAACATAGCTCGT 59.363 34.615 0.00 0.00 0.00 4.18
562 586 6.636447 TGTCACAAAATTCAAAACATAGCTCG 59.364 34.615 0.00 0.00 0.00 5.03
563 587 7.928908 TGTCACAAAATTCAAAACATAGCTC 57.071 32.000 0.00 0.00 0.00 4.09
564 588 7.763528 TGTTGTCACAAAATTCAAAACATAGCT 59.236 29.630 0.00 0.00 0.00 3.32
565 589 7.904094 TGTTGTCACAAAATTCAAAACATAGC 58.096 30.769 0.00 0.00 0.00 2.97
640 664 9.817365 CGGACTATCTTAGCATATTTTCAAATG 57.183 33.333 0.00 0.00 0.00 2.32
641 665 8.507249 GCGGACTATCTTAGCATATTTTCAAAT 58.493 33.333 0.00 0.00 0.00 2.32
642 666 7.715249 AGCGGACTATCTTAGCATATTTTCAAA 59.285 33.333 0.00 0.00 0.00 2.69
643 667 7.171508 CAGCGGACTATCTTAGCATATTTTCAA 59.828 37.037 0.00 0.00 0.00 2.69
644 668 6.646653 CAGCGGACTATCTTAGCATATTTTCA 59.353 38.462 0.00 0.00 0.00 2.69
645 669 6.401581 GCAGCGGACTATCTTAGCATATTTTC 60.402 42.308 0.00 0.00 0.00 2.29
646 670 5.409826 GCAGCGGACTATCTTAGCATATTTT 59.590 40.000 0.00 0.00 0.00 1.82
647 671 4.932200 GCAGCGGACTATCTTAGCATATTT 59.068 41.667 0.00 0.00 0.00 1.40
648 672 4.021104 TGCAGCGGACTATCTTAGCATATT 60.021 41.667 0.00 0.00 0.00 1.28
649 673 3.511540 TGCAGCGGACTATCTTAGCATAT 59.488 43.478 0.00 0.00 0.00 1.78
650 674 2.890945 TGCAGCGGACTATCTTAGCATA 59.109 45.455 0.00 0.00 0.00 3.14
651 675 1.688735 TGCAGCGGACTATCTTAGCAT 59.311 47.619 0.00 0.00 0.00 3.79
652 676 1.111277 TGCAGCGGACTATCTTAGCA 58.889 50.000 0.00 0.00 0.00 3.49
653 677 1.492720 GTGCAGCGGACTATCTTAGC 58.507 55.000 0.00 0.00 0.00 3.09
654 678 1.600663 CGGTGCAGCGGACTATCTTAG 60.601 57.143 29.65 0.00 0.00 2.18
655 679 0.384309 CGGTGCAGCGGACTATCTTA 59.616 55.000 29.65 0.00 0.00 2.10
656 680 1.141881 CGGTGCAGCGGACTATCTT 59.858 57.895 29.65 0.00 0.00 2.40
657 681 0.750546 TACGGTGCAGCGGACTATCT 60.751 55.000 37.73 20.06 0.00 1.98
658 682 0.317938 CTACGGTGCAGCGGACTATC 60.318 60.000 37.73 0.00 0.00 2.08
659 683 1.734137 CTACGGTGCAGCGGACTAT 59.266 57.895 37.73 21.47 0.00 2.12
660 684 3.060020 GCTACGGTGCAGCGGACTA 62.060 63.158 37.73 22.11 0.00 2.59
661 685 4.436998 GCTACGGTGCAGCGGACT 62.437 66.667 37.73 22.18 0.00 3.85
662 686 4.735132 TGCTACGGTGCAGCGGAC 62.735 66.667 37.73 26.74 42.13 4.79
663 687 4.735132 GTGCTACGGTGCAGCGGA 62.735 66.667 37.73 31.42 44.20 5.54
665 689 3.015293 CTTGTGCTACGGTGCAGCG 62.015 63.158 34.46 34.46 44.20 5.18
666 690 2.863153 CTTGTGCTACGGTGCAGC 59.137 61.111 5.64 5.64 44.20 5.25
667 691 2.863153 GCTTGTGCTACGGTGCAG 59.137 61.111 4.86 0.00 44.20 4.41
678 702 3.716006 CGTGCACGGGAGCTTGTG 61.716 66.667 31.15 9.56 39.10 3.33
696 720 2.288273 CCCGAAATCTGAGGACGTATCC 60.288 54.545 0.00 0.00 46.69 2.59
697 721 2.621998 TCCCGAAATCTGAGGACGTATC 59.378 50.000 0.00 0.00 0.00 2.24
698 722 2.623889 CTCCCGAAATCTGAGGACGTAT 59.376 50.000 0.00 0.00 0.00 3.06
699 723 2.022195 CTCCCGAAATCTGAGGACGTA 58.978 52.381 0.00 0.00 0.00 3.57
700 724 0.818296 CTCCCGAAATCTGAGGACGT 59.182 55.000 0.00 0.00 0.00 4.34
701 725 0.818296 ACTCCCGAAATCTGAGGACG 59.182 55.000 0.00 0.00 0.00 4.79
702 726 1.137282 GGACTCCCGAAATCTGAGGAC 59.863 57.143 0.00 0.00 0.00 3.85
703 727 1.273041 TGGACTCCCGAAATCTGAGGA 60.273 52.381 0.00 0.00 34.29 3.71
704 728 1.195115 TGGACTCCCGAAATCTGAGG 58.805 55.000 0.00 0.00 34.29 3.86
705 729 3.550437 ATTGGACTCCCGAAATCTGAG 57.450 47.619 0.00 0.00 34.29 3.35
706 730 4.030913 ACTATTGGACTCCCGAAATCTGA 58.969 43.478 0.00 0.00 34.29 3.27
707 731 4.408182 ACTATTGGACTCCCGAAATCTG 57.592 45.455 0.00 0.00 34.29 2.90
708 732 5.186198 CAAACTATTGGACTCCCGAAATCT 58.814 41.667 0.00 0.00 32.69 2.40
709 733 4.201920 GCAAACTATTGGACTCCCGAAATC 60.202 45.833 0.00 0.00 37.02 2.17
710 734 3.694566 GCAAACTATTGGACTCCCGAAAT 59.305 43.478 0.00 0.00 37.02 2.17
711 735 3.078837 GCAAACTATTGGACTCCCGAAA 58.921 45.455 0.00 0.00 37.02 3.46
712 736 2.706890 GCAAACTATTGGACTCCCGAA 58.293 47.619 0.00 0.00 37.02 4.30
713 737 1.404986 CGCAAACTATTGGACTCCCGA 60.405 52.381 0.00 0.00 37.02 5.14
714 738 1.006832 CGCAAACTATTGGACTCCCG 58.993 55.000 0.00 0.00 37.02 5.14
715 739 2.109425 ACGCAAACTATTGGACTCCC 57.891 50.000 0.00 0.00 37.02 4.30
716 740 2.414161 GCAACGCAAACTATTGGACTCC 60.414 50.000 0.00 0.00 37.02 3.85
717 741 2.225491 TGCAACGCAAACTATTGGACTC 59.775 45.455 0.00 0.00 34.76 3.36
875 1724 0.625849 AAGTTTGGGCATCCGGAGAT 59.374 50.000 11.34 0.00 35.24 2.75
876 1725 1.281419 TAAGTTTGGGCATCCGGAGA 58.719 50.000 11.34 0.00 35.24 3.71
877 1726 2.122783 TTAAGTTTGGGCATCCGGAG 57.877 50.000 11.34 3.17 35.24 4.63
878 1727 2.164338 GTTTAAGTTTGGGCATCCGGA 58.836 47.619 6.61 6.61 35.24 5.14
879 1728 1.203758 GGTTTAAGTTTGGGCATCCGG 59.796 52.381 0.00 0.00 35.24 5.14
880 1729 1.203758 GGGTTTAAGTTTGGGCATCCG 59.796 52.381 0.00 0.00 35.24 4.18
881 1730 2.252714 TGGGTTTAAGTTTGGGCATCC 58.747 47.619 0.00 0.00 0.00 3.51
962 1819 1.134848 CCTGGTTGTTTGGGTGTTGTG 60.135 52.381 0.00 0.00 0.00 3.33
964 1821 1.479709 TCCTGGTTGTTTGGGTGTTG 58.520 50.000 0.00 0.00 0.00 3.33
1084 1941 2.502080 CGTCTCGTCAGTGGCGTC 60.502 66.667 17.93 8.17 34.70 5.19
1085 1942 4.039357 CCGTCTCGTCAGTGGCGT 62.039 66.667 17.93 0.00 37.27 5.68
1086 1943 4.039357 ACCGTCTCGTCAGTGGCG 62.039 66.667 11.78 11.78 38.51 5.69
1087 1944 2.430921 CACCGTCTCGTCAGTGGC 60.431 66.667 0.00 0.00 0.00 5.01
1088 1945 2.258591 CCACCGTCTCGTCAGTGG 59.741 66.667 0.00 0.00 43.50 4.00
1089 1946 1.081376 GACCACCGTCTCGTCAGTG 60.081 63.158 0.00 0.00 35.99 3.66
1090 1947 2.614446 CGACCACCGTCTCGTCAGT 61.614 63.158 0.00 0.00 36.82 3.41
1091 1948 2.176055 CGACCACCGTCTCGTCAG 59.824 66.667 0.00 0.00 36.82 3.51
1092 1949 4.034258 GCGACCACCGTCTCGTCA 62.034 66.667 0.00 0.00 41.15 4.35
1111 1968 4.773117 GACGTCGCTGACCGGACC 62.773 72.222 9.46 0.00 37.59 4.46
1112 1969 4.773117 GGACGTCGCTGACCGGAC 62.773 72.222 9.46 1.07 37.59 4.79
1176 2033 5.673818 GCCAAATTTCTCCAACATCTCGTAC 60.674 44.000 0.00 0.00 0.00 3.67
1573 2439 0.035739 ACGTAACCAACTGCCCGATT 59.964 50.000 0.00 0.00 0.00 3.34
1689 2560 2.424246 TGTGCATCCGTCGACTTACATA 59.576 45.455 14.70 0.53 0.00 2.29
1821 2692 2.728690 ATGACAATTGCACGCATTGT 57.271 40.000 13.70 13.70 40.75 2.71
1822 2693 5.705813 AAATATGACAATTGCACGCATTG 57.294 34.783 5.05 7.84 0.00 2.82
1860 2741 7.639162 AAAACGCTCTTATATTATGAGACGG 57.361 36.000 16.71 7.11 35.72 4.79
1879 2760 9.705471 TTTTACACTACACTAATGTCAAAAACG 57.295 29.630 0.00 0.00 40.48 3.60
1886 2767 7.113704 AGCGTTTTTACACTACACTAATGTC 57.886 36.000 0.00 0.00 40.48 3.06
1888 2769 7.347508 AGAGCGTTTTTACACTACACTAATG 57.652 36.000 0.00 0.00 0.00 1.90
1893 2774 5.399604 ACAAGAGCGTTTTTACACTACAC 57.600 39.130 0.00 0.00 0.00 2.90
1921 2805 9.237706 TGAATAAAAATAATACTCCCTCCTCCT 57.762 33.333 0.00 0.00 0.00 3.69
2013 2913 3.584406 TTTCATTACAAACATGCCCCG 57.416 42.857 0.00 0.00 0.00 5.73
2086 2986 2.122729 CCAGTGGAGGAGGGGTGA 59.877 66.667 1.68 0.00 0.00 4.02
2104 3004 2.276309 GAGGAGGGGGCAATGACCTG 62.276 65.000 4.56 0.00 34.02 4.00
2160 3060 4.544564 TGGGGAAACTAGAGCTCTATCT 57.455 45.455 23.48 11.00 0.00 1.98
2215 3241 1.203994 CGTACCCTCCACCTAACAGTG 59.796 57.143 0.00 0.00 37.51 3.66
2217 3243 0.822164 CCGTACCCTCCACCTAACAG 59.178 60.000 0.00 0.00 0.00 3.16
2225 3251 2.682494 GAGCCACCGTACCCTCCA 60.682 66.667 0.00 0.00 0.00 3.86
2226 3252 3.468140 GGAGCCACCGTACCCTCC 61.468 72.222 0.00 0.00 37.33 4.30
2235 3261 1.377856 GCTTCAAGGAGGAGCCACC 60.378 63.158 0.00 0.00 40.02 4.61
2246 3272 2.159787 CCAAATCGAGTGTCGCTTCAAG 60.160 50.000 0.00 0.00 40.21 3.02
2252 3278 1.702299 CGTCCAAATCGAGTGTCGC 59.298 57.895 0.00 0.00 40.21 5.19
2279 3305 4.738998 CATGGTTGCCCCCTCGCA 62.739 66.667 0.00 0.00 36.85 5.10
2300 3327 4.676723 GCCTATCATTGATCGACTAGGCTC 60.677 50.000 22.11 3.45 44.97 4.70
2330 3357 2.071262 AGGCAGCAGATGGAGGAGG 61.071 63.158 0.00 0.00 0.00 4.30
2396 3423 3.512680 ACGATCTTGAACGATCAGAACC 58.487 45.455 7.26 0.00 39.78 3.62
2402 3429 4.036352 GGTGTAGACGATCTTGAACGATC 58.964 47.826 7.26 0.00 37.13 3.69
2412 3439 2.190325 CCGTGAAGGTGTAGACGATC 57.810 55.000 0.00 0.00 33.64 3.69
2427 3454 1.573829 CCACAATTCCGTCCACCGTG 61.574 60.000 0.00 0.00 33.66 4.94
2436 3463 0.796312 CGTTGTCCTCCACAATTCCG 59.204 55.000 0.00 0.00 46.90 4.30
2441 3468 0.323629 GGGATCGTTGTCCTCCACAA 59.676 55.000 4.71 0.00 43.12 3.33
2478 3505 1.696832 GCTTCGGATCCAGTTCACGC 61.697 60.000 13.41 0.09 0.00 5.34
2501 3528 2.034812 GCACTAGGATGACGGGTCTAAG 59.965 54.545 0.00 0.00 0.00 2.18
2507 3534 1.065928 GTCGCACTAGGATGACGGG 59.934 63.158 0.00 0.00 0.00 5.28
2518 3545 4.280494 ACAAGCCGTCGTCGCACT 62.280 61.111 0.00 0.00 35.54 4.40
2552 3579 0.671781 ACAAGGACGTGATGCTGCTC 60.672 55.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.