Multiple sequence alignment - TraesCS1D01G263200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G263200 chr1D 100.000 1817 0 0 745 2561 357438704 357436888 0.000000e+00 3356.0
1 TraesCS1D01G263200 chr1D 100.000 332 0 0 1 332 357439448 357439117 4.680000e-172 614.0
2 TraesCS1D01G263200 chr1B 88.983 1062 70 20 745 1795 480826992 480825967 0.000000e+00 1269.0
3 TraesCS1D01G263200 chr1B 90.444 586 47 2 1728 2313 480825966 480825390 0.000000e+00 763.0
4 TraesCS1D01G263200 chr1B 94.362 337 9 4 1 332 480827375 480827044 2.270000e-140 508.0
5 TraesCS1D01G263200 chr1B 91.176 204 15 2 2358 2561 480823763 480823563 9.030000e-70 274.0
6 TraesCS1D01G263200 chr1A 88.824 859 58 16 745 1597 458511270 458510444 0.000000e+00 1020.0
7 TraesCS1D01G263200 chr1A 82.779 691 90 17 1880 2561 458509599 458508929 7.890000e-165 590.0
8 TraesCS1D01G263200 chr1A 94.118 255 9 2 84 332 458511568 458511314 1.440000e-102 383.0
9 TraesCS1D01G263200 chr1A 96.774 31 1 0 130 160 458512270 458512240 5.000000e-03 52.8
10 TraesCS1D01G263200 chr1A 100.000 28 0 0 86 113 458512598 458512571 5.000000e-03 52.8
11 TraesCS1D01G263200 chr3B 83.713 307 29 12 1054 1352 676944476 676944183 1.170000e-68 270.0
12 TraesCS1D01G263200 chr3A 81.370 365 31 16 1007 1352 649541237 649540891 1.950000e-66 263.0
13 TraesCS1D01G263200 chr3D 77.724 413 73 16 1007 1409 514651952 514651549 4.260000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G263200 chr1D 357436888 357439448 2560 True 1985.00 3356 100.00000 1 2561 2 chr1D.!!$R1 2560
1 TraesCS1D01G263200 chr1B 480823563 480827375 3812 True 703.50 1269 91.24125 1 2561 4 chr1B.!!$R1 2560
2 TraesCS1D01G263200 chr1A 458508929 458512598 3669 True 419.72 1020 92.49900 84 2561 5 chr1A.!!$R1 2477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.108615 CCGACATCACAGTCAGGTCC 60.109 60.0 0.0 0.0 38.43 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2950 0.179012 GTTGTTTTGGAGGACCCGGA 60.179 55.0 0.73 0.0 37.93 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.108615 CCGACATCACAGTCAGGTCC 60.109 60.000 0.00 0.00 38.43 4.46
66 67 2.026822 TCCTTGCTGTTTCATCTCCCTC 60.027 50.000 0.00 0.00 0.00 4.30
67 68 2.026449 CCTTGCTGTTTCATCTCCCTCT 60.026 50.000 0.00 0.00 0.00 3.69
77 78 3.474570 CTCCCTCTTGGCCCTCGG 61.475 72.222 0.00 0.00 0.00 4.63
277 1231 1.004927 CGATTAGCTGTAAACTGCGCC 60.005 52.381 4.18 0.00 44.18 6.53
836 1791 2.183504 ACGCATGTGCACGAACCAA 61.184 52.632 13.13 0.00 42.21 3.67
838 1793 0.387112 CGCATGTGCACGAACCAATT 60.387 50.000 13.13 0.00 42.21 2.32
839 1794 1.339711 GCATGTGCACGAACCAATTC 58.660 50.000 13.13 0.00 41.59 2.17
840 1795 1.335780 GCATGTGCACGAACCAATTCA 60.336 47.619 13.13 0.00 41.59 2.57
841 1796 2.587956 CATGTGCACGAACCAATTCAG 58.412 47.619 13.13 0.00 34.14 3.02
842 1797 0.950836 TGTGCACGAACCAATTCAGG 59.049 50.000 13.13 0.00 34.14 3.86
843 1798 1.234821 GTGCACGAACCAATTCAGGA 58.765 50.000 0.00 0.00 34.14 3.86
844 1799 1.606668 GTGCACGAACCAATTCAGGAA 59.393 47.619 0.00 0.00 34.14 3.36
845 1800 1.879380 TGCACGAACCAATTCAGGAAG 59.121 47.619 0.00 0.00 34.14 3.46
846 1801 2.151202 GCACGAACCAATTCAGGAAGA 58.849 47.619 0.00 0.00 34.14 2.87
851 1806 3.437049 CGAACCAATTCAGGAAGAGAACC 59.563 47.826 0.00 0.00 34.14 3.62
868 1823 4.113815 CCCAAGCGCCTCCATCCA 62.114 66.667 2.29 0.00 0.00 3.41
869 1824 2.515523 CCAAGCGCCTCCATCCAG 60.516 66.667 2.29 0.00 0.00 3.86
871 1826 3.720601 AAGCGCCTCCATCCAGCA 61.721 61.111 2.29 0.00 0.00 4.41
875 1830 2.249535 CGCCTCCATCCAGCATTCG 61.250 63.158 0.00 0.00 0.00 3.34
876 1831 1.146930 GCCTCCATCCAGCATTCGA 59.853 57.895 0.00 0.00 0.00 3.71
877 1832 0.883814 GCCTCCATCCAGCATTCGAG 60.884 60.000 0.00 0.00 0.00 4.04
879 1834 0.179065 CTCCATCCAGCATTCGAGCA 60.179 55.000 0.00 0.00 36.85 4.26
880 1835 0.462581 TCCATCCAGCATTCGAGCAC 60.463 55.000 0.00 0.00 36.85 4.40
881 1836 1.640069 CATCCAGCATTCGAGCACG 59.360 57.895 0.00 0.00 41.26 5.34
882 1837 1.086067 CATCCAGCATTCGAGCACGT 61.086 55.000 2.86 0.00 40.69 4.49
883 1838 0.459899 ATCCAGCATTCGAGCACGTA 59.540 50.000 2.86 0.00 40.69 3.57
884 1839 0.457853 TCCAGCATTCGAGCACGTAC 60.458 55.000 2.86 0.00 40.69 3.67
885 1840 1.625870 CAGCATTCGAGCACGTACG 59.374 57.895 15.01 15.01 40.69 3.67
886 1841 1.071019 CAGCATTCGAGCACGTACGT 61.071 55.000 16.72 16.72 40.69 3.57
935 1899 1.439644 GAGTCCAGCTAAGGCGAGG 59.560 63.158 0.00 0.00 44.37 4.63
941 1905 2.203771 AGCTAAGGCGAGGGATCGG 61.204 63.158 0.00 0.00 44.37 4.18
943 1907 2.029307 GCTAAGGCGAGGGATCGGTT 62.029 60.000 0.00 0.00 0.00 4.44
945 1909 2.306255 TAAGGCGAGGGATCGGTTGC 62.306 60.000 0.00 0.00 0.00 4.17
1447 2416 2.032528 CTGGTGCCGGAGAGCAAA 59.967 61.111 5.05 0.00 46.19 3.68
1461 2430 2.188912 GCAAATGGCATACGGTGGT 58.811 52.632 0.00 0.00 43.97 4.16
1462 2431 1.384525 GCAAATGGCATACGGTGGTA 58.615 50.000 0.00 0.00 43.97 3.25
1463 2432 1.064952 GCAAATGGCATACGGTGGTAC 59.935 52.381 0.00 0.00 43.97 3.34
1478 2447 1.561076 TGGTACTGGTACGAGGAGCTA 59.439 52.381 18.58 4.51 36.94 3.32
1488 2457 4.075793 AGGAGCTACAGCCCCGGA 62.076 66.667 0.73 0.00 44.41 5.14
1515 2484 3.423179 CTCGTCTACGGGGAGCTC 58.577 66.667 4.71 4.71 40.29 4.09
1542 2511 2.860051 CGACATGGAGATCGTGACG 58.140 57.895 0.00 0.00 42.01 4.35
1552 2521 0.025513 GATCGTGACGATGTTGCAGC 59.974 55.000 26.42 4.97 47.00 5.25
1553 2522 0.390340 ATCGTGACGATGTTGCAGCT 60.390 50.000 20.73 0.00 45.24 4.24
1555 2524 0.642291 CGTGACGATGTTGCAGCTAG 59.358 55.000 0.00 0.00 0.00 3.42
1569 2538 6.152154 TGTTGCAGCTAGTGTAGTTGTAGATA 59.848 38.462 1.17 0.00 38.98 1.98
1572 2541 6.377429 TGCAGCTAGTGTAGTTGTAGATAGTT 59.623 38.462 0.00 0.00 38.98 2.24
1575 2544 9.719279 CAGCTAGTGTAGTTGTAGATAGTTAAC 57.281 37.037 0.00 0.00 33.05 2.01
1585 2554 8.322091 AGTTGTAGATAGTTAACTTTGGCAGAT 58.678 33.333 14.49 0.00 29.65 2.90
1619 2588 6.991938 TGCAGAACCAGCAAGTATTTATTTT 58.008 32.000 0.00 0.00 39.39 1.82
1620 2589 7.441017 TGCAGAACCAGCAAGTATTTATTTTT 58.559 30.769 0.00 0.00 39.39 1.94
1758 2836 7.828712 TGACTGAGATCAGAGAATGCATATAG 58.171 38.462 16.52 0.00 46.59 1.31
1820 2898 2.936202 TCCGCTATAAACCTCGGTACT 58.064 47.619 0.00 0.00 42.28 2.73
1829 2907 0.316204 ACCTCGGTACTCAACAACGG 59.684 55.000 0.00 0.00 0.00 4.44
1851 2929 1.608590 CTTCAACTTCATTGCCGGTGT 59.391 47.619 1.90 0.00 38.29 4.16
1872 2950 5.067805 GTGTCTTTGACAAAACCTGGAATCT 59.932 40.000 0.00 0.00 44.49 2.40
1875 2953 2.778299 TGACAAAACCTGGAATCTCCG 58.222 47.619 0.00 0.00 40.17 4.63
1916 3467 6.150641 CACATCCAAGAAGAGAATGACACATT 59.849 38.462 0.00 0.00 0.00 2.71
1939 3493 0.037326 GTCCACAGTGAGCGGATTCA 60.037 55.000 0.62 0.00 0.00 2.57
1946 3500 4.074970 ACAGTGAGCGGATTCAAGAAAAT 58.925 39.130 0.00 0.00 0.00 1.82
1953 3507 6.041423 AGCGGATTCAAGAAAATTCCAAAT 57.959 33.333 2.83 0.00 0.00 2.32
1959 3513 9.586435 GGATTCAAGAAAATTCCAAATATCGTT 57.414 29.630 0.00 0.00 0.00 3.85
2020 3574 4.638421 CGCCCCTAATCAAACTCATGTTTA 59.362 41.667 0.00 0.00 43.75 2.01
2024 3578 6.265422 CCCCTAATCAAACTCATGTTTATCCC 59.735 42.308 0.00 0.00 43.75 3.85
2065 3619 1.132657 TGTCTGGTTCCTCTACCCCAA 60.133 52.381 0.00 0.00 37.39 4.12
2068 3622 2.384375 TCTGGTTCCTCTACCCCAACTA 59.616 50.000 0.00 0.00 37.39 2.24
2079 3633 1.517832 CCCAACTAGTGCTCCCGAG 59.482 63.158 0.00 0.00 0.00 4.63
2144 3698 1.265095 GTGCACAGAACACCATGTCAG 59.735 52.381 13.17 0.00 31.67 3.51
2149 3703 4.261741 GCACAGAACACCATGTCAGAAATT 60.262 41.667 0.00 0.00 0.00 1.82
2150 3704 5.217393 CACAGAACACCATGTCAGAAATTG 58.783 41.667 0.00 0.00 0.00 2.32
2161 3715 7.156673 CCATGTCAGAAATTGTTTTCCTTCAT 58.843 34.615 0.00 0.00 41.86 2.57
2162 3716 8.306038 CCATGTCAGAAATTGTTTTCCTTCATA 58.694 33.333 0.00 0.00 41.86 2.15
2163 3717 9.695526 CATGTCAGAAATTGTTTTCCTTCATAA 57.304 29.630 0.00 0.00 41.86 1.90
2164 3718 9.918630 ATGTCAGAAATTGTTTTCCTTCATAAG 57.081 29.630 0.00 0.00 41.86 1.73
2206 3760 5.984233 GTGTGTGACACTCTCAATTGTAA 57.016 39.130 17.47 0.00 45.27 2.41
2214 3768 8.181573 GTGACACTCTCAATTGTAAGTGAAAAA 58.818 33.333 31.30 18.72 41.26 1.94
2232 3786 8.832521 AGTGAAAAACATACGTCATTTGTAGAA 58.167 29.630 0.00 0.00 0.00 2.10
2241 3795 4.142622 ACGTCATTTGTAGAATGCCACATG 60.143 41.667 0.00 0.00 0.00 3.21
2242 3796 4.675510 GTCATTTGTAGAATGCCACATGG 58.324 43.478 0.00 0.00 38.53 3.66
2243 3797 4.158394 GTCATTTGTAGAATGCCACATGGT 59.842 41.667 0.00 0.00 37.57 3.55
2244 3798 5.356751 GTCATTTGTAGAATGCCACATGGTA 59.643 40.000 0.00 0.00 37.57 3.25
2245 3799 5.356751 TCATTTGTAGAATGCCACATGGTAC 59.643 40.000 0.00 0.00 37.57 3.34
2278 3832 0.909610 CTAGGTCCACCCTTGGCTCA 60.910 60.000 0.00 0.00 42.73 4.26
2313 3867 0.179000 AGCTCAAGCCCTGTTATCGG 59.821 55.000 0.00 0.00 43.38 4.18
2315 3869 1.656652 CTCAAGCCCTGTTATCGGTG 58.343 55.000 0.00 0.00 0.00 4.94
2317 3871 0.392998 CAAGCCCTGTTATCGGTGCT 60.393 55.000 0.00 0.00 32.00 4.40
2319 3873 1.220749 GCCCTGTTATCGGTGCTCA 59.779 57.895 0.00 0.00 0.00 4.26
2337 3891 1.074926 ATCCCGCCATCTCTCACCT 60.075 57.895 0.00 0.00 0.00 4.00
2351 3905 1.905215 CTCACCTCCTCACATCCTTGT 59.095 52.381 0.00 0.00 36.15 3.16
2352 3906 2.304180 CTCACCTCCTCACATCCTTGTT 59.696 50.000 0.00 0.00 32.34 2.83
2355 3909 2.982488 ACCTCCTCACATCCTTGTTCTT 59.018 45.455 0.00 0.00 32.34 2.52
2401 5537 5.455525 CGTTGAAGTGGACTTGATGTTTTTC 59.544 40.000 0.00 0.00 36.11 2.29
2425 5561 0.301687 CACCAATCTGCGCATACGTC 59.698 55.000 12.24 0.00 42.83 4.34
2426 5562 0.108377 ACCAATCTGCGCATACGTCA 60.108 50.000 12.24 0.00 42.83 4.35
2503 5640 8.564574 GTGTATCTGTTGTTTTCTGGACATTTA 58.435 33.333 0.00 0.00 0.00 1.40
2504 5641 9.126151 TGTATCTGTTGTTTTCTGGACATTTAA 57.874 29.630 0.00 0.00 0.00 1.52
2505 5642 9.959749 GTATCTGTTGTTTTCTGGACATTTAAA 57.040 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.649277 GACTGTGATGTCGGCCGCT 62.649 63.158 23.51 7.45 0.00 5.52
47 48 3.347077 AGAGGGAGATGAAACAGCAAG 57.653 47.619 0.00 0.00 0.00 4.01
277 1231 2.181021 GGTCTACGGACGTGGCTG 59.819 66.667 7.73 0.00 42.97 4.85
751 1705 1.542328 GGGGTTGACATTTTTGGGTGC 60.542 52.381 0.00 0.00 0.00 5.01
836 1791 2.291217 GCTTGGGGTTCTCTTCCTGAAT 60.291 50.000 0.00 0.00 0.00 2.57
838 1793 0.693049 GCTTGGGGTTCTCTTCCTGA 59.307 55.000 0.00 0.00 0.00 3.86
839 1794 0.674895 CGCTTGGGGTTCTCTTCCTG 60.675 60.000 0.00 0.00 0.00 3.86
840 1795 1.679898 CGCTTGGGGTTCTCTTCCT 59.320 57.895 0.00 0.00 0.00 3.36
841 1796 2.041115 GCGCTTGGGGTTCTCTTCC 61.041 63.158 0.00 0.00 0.00 3.46
842 1797 2.041115 GGCGCTTGGGGTTCTCTTC 61.041 63.158 7.64 0.00 0.00 2.87
843 1798 2.034221 GGCGCTTGGGGTTCTCTT 59.966 61.111 7.64 0.00 0.00 2.85
844 1799 2.930562 AGGCGCTTGGGGTTCTCT 60.931 61.111 7.64 0.00 0.00 3.10
845 1800 2.436824 GAGGCGCTTGGGGTTCTC 60.437 66.667 7.64 0.00 0.00 2.87
846 1801 4.035102 GGAGGCGCTTGGGGTTCT 62.035 66.667 7.64 0.00 0.00 3.01
851 1806 4.113815 TGGATGGAGGCGCTTGGG 62.114 66.667 7.64 0.00 0.00 4.12
868 1823 0.448990 TACGTACGTGCTCGAATGCT 59.551 50.000 30.25 1.29 40.62 3.79
869 1824 0.564767 GTACGTACGTGCTCGAATGC 59.435 55.000 30.25 0.63 40.62 3.56
871 1826 3.209429 CGTACGTACGTGCTCGAAT 57.791 52.632 33.95 3.43 44.13 3.34
899 1854 4.965858 CGTCGATCTCGCGAGGCC 62.966 72.222 33.98 23.70 41.49 5.19
901 1856 3.230005 CTCCGTCGATCTCGCGAGG 62.230 68.421 33.98 19.36 41.49 4.63
1053 2022 2.813908 CTCACGCCCTTGTACGGC 60.814 66.667 0.46 0.46 43.38 5.68
1131 2100 4.577246 GCGTAGGAGCCGAGCCAG 62.577 72.222 0.00 0.00 0.00 4.85
1431 2400 1.675310 CATTTGCTCTCCGGCACCA 60.675 57.895 0.00 0.00 42.27 4.17
1447 2416 0.468226 CCAGTACCACCGTATGCCAT 59.532 55.000 0.00 0.00 0.00 4.40
1452 2421 2.292267 CTCGTACCAGTACCACCGTAT 58.708 52.381 2.46 0.00 32.61 3.06
1458 2427 0.330604 AGCTCCTCGTACCAGTACCA 59.669 55.000 2.46 0.00 32.61 3.25
1459 2428 1.946081 GTAGCTCCTCGTACCAGTACC 59.054 57.143 0.00 0.00 32.61 3.34
1460 2429 2.613133 CTGTAGCTCCTCGTACCAGTAC 59.387 54.545 0.00 0.00 0.00 2.73
1461 2430 2.915349 CTGTAGCTCCTCGTACCAGTA 58.085 52.381 0.00 0.00 0.00 2.74
1462 2431 1.752683 CTGTAGCTCCTCGTACCAGT 58.247 55.000 0.00 0.00 0.00 4.00
1463 2432 0.382515 GCTGTAGCTCCTCGTACCAG 59.617 60.000 0.00 0.00 38.21 4.00
1500 2469 1.749638 ACTGAGCTCCCCGTAGACG 60.750 63.158 12.15 0.00 39.44 4.18
1506 2475 2.997315 TCCACACTGAGCTCCCCG 60.997 66.667 12.15 2.07 0.00 5.73
1515 2484 0.603065 TCTCCATGTCGTCCACACTG 59.397 55.000 0.00 0.00 38.04 3.66
1542 2511 3.997021 ACAACTACACTAGCTGCAACATC 59.003 43.478 1.02 0.00 0.00 3.06
1555 2524 8.654215 GCCAAAGTTAACTATCTACAACTACAC 58.346 37.037 8.92 0.00 31.20 2.90
1569 2538 5.065218 CGCTATTGATCTGCCAAAGTTAACT 59.935 40.000 1.12 1.12 0.00 2.24
1572 2541 4.513442 ACGCTATTGATCTGCCAAAGTTA 58.487 39.130 0.00 0.00 0.00 2.24
1575 2544 3.688272 CAACGCTATTGATCTGCCAAAG 58.312 45.455 0.00 0.00 0.00 2.77
1579 2548 1.003116 CTGCAACGCTATTGATCTGCC 60.003 52.381 1.99 0.00 0.00 4.85
1585 2554 2.076100 CTGGTTCTGCAACGCTATTGA 58.924 47.619 1.99 0.00 32.68 2.57
1820 2898 3.601435 TGAAGTTGAAGACCGTTGTTGA 58.399 40.909 0.00 0.00 0.00 3.18
1829 2907 1.880027 ACCGGCAATGAAGTTGAAGAC 59.120 47.619 0.00 0.00 40.37 3.01
1851 2929 4.827284 GGAGATTCCAGGTTTTGTCAAAGA 59.173 41.667 0.00 0.00 36.28 2.52
1872 2950 0.179012 GTTGTTTTGGAGGACCCGGA 60.179 55.000 0.73 0.00 37.93 5.14
1875 2953 1.770294 TGTGTTGTTTTGGAGGACCC 58.230 50.000 0.00 0.00 34.81 4.46
1916 3467 4.436515 CGCTCACTGTGGACACAA 57.563 55.556 8.11 0.00 41.33 3.33
1939 3493 9.203421 GGTGAAAACGATATTTGGAATTTTCTT 57.797 29.630 8.28 0.00 37.10 2.52
1946 3500 6.885952 TCTTGGTGAAAACGATATTTGGAA 57.114 33.333 0.00 0.00 0.00 3.53
1959 3513 5.233902 CGAATGCATTGTTTTCTTGGTGAAA 59.766 36.000 18.59 0.00 42.33 2.69
2047 3601 1.151413 AGTTGGGGTAGAGGAACCAGA 59.849 52.381 0.00 0.00 41.67 3.86
2065 3619 0.820074 CGATCCTCGGGAGCACTAGT 60.820 60.000 8.57 0.00 38.11 2.57
2068 3622 3.532155 GCGATCCTCGGGAGCACT 61.532 66.667 8.57 0.00 38.11 4.40
2079 3633 1.227205 CTGCTCAGAGTGGCGATCC 60.227 63.158 0.00 0.00 0.00 3.36
2139 3693 8.912988 ACTTATGAAGGAAAACAATTTCTGACA 58.087 29.630 1.80 0.00 43.65 3.58
2206 3760 8.373048 TCTACAAATGACGTATGTTTTTCACT 57.627 30.769 0.00 0.00 0.00 3.41
2214 3768 5.064707 GTGGCATTCTACAAATGACGTATGT 59.935 40.000 0.00 0.00 38.49 2.29
2232 3786 0.037590 ACAACCGTACCATGTGGCAT 59.962 50.000 0.00 0.00 39.32 4.40
2241 3795 3.992427 CCTAGAGTGAAAACAACCGTACC 59.008 47.826 0.00 0.00 0.00 3.34
2242 3796 4.625028 ACCTAGAGTGAAAACAACCGTAC 58.375 43.478 0.00 0.00 0.00 3.67
2243 3797 4.262164 GGACCTAGAGTGAAAACAACCGTA 60.262 45.833 0.00 0.00 0.00 4.02
2244 3798 3.493873 GGACCTAGAGTGAAAACAACCGT 60.494 47.826 0.00 0.00 0.00 4.83
2245 3799 3.064931 GGACCTAGAGTGAAAACAACCG 58.935 50.000 0.00 0.00 0.00 4.44
2271 3825 1.545428 GGTGGATGTGTTCTGAGCCAA 60.545 52.381 0.00 0.00 0.00 4.52
2278 3832 1.834263 GAGCTAGGGTGGATGTGTTCT 59.166 52.381 0.00 0.00 0.00 3.01
2313 3867 1.596477 GAGATGGCGGGATGAGCAC 60.596 63.158 0.00 0.00 36.08 4.40
2315 3869 1.005156 GAGAGATGGCGGGATGAGC 60.005 63.158 0.00 0.00 0.00 4.26
2317 3871 1.402896 GGTGAGAGATGGCGGGATGA 61.403 60.000 0.00 0.00 0.00 2.92
2319 3873 1.074926 AGGTGAGAGATGGCGGGAT 60.075 57.895 0.00 0.00 0.00 3.85
2337 3891 3.903714 TCTCAAGAACAAGGATGTGAGGA 59.096 43.478 0.00 0.00 40.46 3.71
2351 3905 4.460382 GCATCAATTCCACCTTCTCAAGAA 59.540 41.667 0.00 0.00 0.00 2.52
2352 3906 4.012374 GCATCAATTCCACCTTCTCAAGA 58.988 43.478 0.00 0.00 0.00 3.02
2355 3909 3.438216 TGCATCAATTCCACCTTCTCA 57.562 42.857 0.00 0.00 0.00 3.27
2401 5537 1.638388 ATGCGCAGATTGGTGTCACG 61.638 55.000 18.32 0.00 0.00 4.35
2453 5589 5.880332 CCTAAATTCCAGCAGCTACAAACTA 59.120 40.000 0.00 0.00 0.00 2.24
2454 5590 4.702131 CCTAAATTCCAGCAGCTACAAACT 59.298 41.667 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.