Multiple sequence alignment - TraesCS1D01G263100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G263100 chr1D 100.000 4439 0 0 1 4439 357431345 357435783 0.000000e+00 8198.0
1 TraesCS1D01G263100 chr1D 82.250 400 38 12 1399 1782 280685852 280686234 9.270000e-82 315.0
2 TraesCS1D01G263100 chr1A 92.991 3481 158 36 821 4266 458504416 458507845 0.000000e+00 4998.0
3 TraesCS1D01G263100 chr1A 86.667 330 26 9 505 831 458504074 458504388 2.540000e-92 350.0
4 TraesCS1D01G263100 chr1A 84.252 381 32 11 1418 1782 352856312 352856680 3.290000e-91 346.0
5 TraesCS1D01G263100 chr1A 92.857 42 2 1 194 234 21349089 21349130 4.790000e-05 60.2
6 TraesCS1D01G263100 chr1B 93.803 1872 93 11 2114 3981 480820214 480822066 0.000000e+00 2793.0
7 TraesCS1D01G263100 chr1B 93.779 1302 70 8 821 2118 480818893 480820187 0.000000e+00 1945.0
8 TraesCS1D01G263100 chr1B 83.879 397 40 12 1399 1779 381386089 381386477 1.520000e-94 357.0
9 TraesCS1D01G263100 chr1B 89.954 219 12 4 3991 4209 480822271 480822479 1.570000e-69 274.0
10 TraesCS1D01G263100 chr5A 86.284 401 36 5 1399 1782 145748919 145748521 6.870000e-113 418.0
11 TraesCS1D01G263100 chr3B 78.113 530 103 8 2905 3429 676894870 676895391 1.540000e-84 324.0
12 TraesCS1D01G263100 chr3A 77.230 527 113 5 2905 3429 649534962 649535483 7.220000e-78 302.0
13 TraesCS1D01G263100 chr3D 75.637 628 138 10 2808 3429 514647821 514648439 9.330000e-77 298.0
14 TraesCS1D01G263100 chr5B 91.463 164 12 1 1399 1560 141953400 141953237 1.610000e-54 224.0
15 TraesCS1D01G263100 chr5B 82.065 184 14 6 1615 1782 141953237 141953057 5.990000e-29 139.0
16 TraesCS1D01G263100 chr5D 90.184 163 15 1 1399 1560 129875588 129875426 1.250000e-50 211.0
17 TraesCS1D01G263100 chr5D 82.065 184 14 5 1615 1782 129875426 129875246 5.990000e-29 139.0
18 TraesCS1D01G263100 chr5D 84.783 92 9 3 286 372 416217017 416216926 2.200000e-13 87.9
19 TraesCS1D01G263100 chr2B 80.838 167 22 7 248 413 9013814 9013657 6.030000e-24 122.0
20 TraesCS1D01G263100 chr2A 76.245 261 42 10 266 506 16842631 16842891 2.170000e-23 121.0
21 TraesCS1D01G263100 chr2A 80.620 129 21 2 248 372 54137253 54137381 3.650000e-16 97.1
22 TraesCS1D01G263100 chr4D 86.813 91 10 1 262 350 508331641 508331731 2.830000e-17 100.0
23 TraesCS1D01G263100 chr2D 80.597 134 21 4 250 380 2766447 2766578 1.020000e-16 99.0
24 TraesCS1D01G263100 chr2D 100.000 29 0 0 325 353 632129424 632129452 2.000000e-03 54.7
25 TraesCS1D01G263100 chr7B 88.235 68 6 2 266 333 7342477 7342542 3.680000e-11 80.5
26 TraesCS1D01G263100 chr7B 77.953 127 25 3 248 372 705531807 705531932 4.760000e-10 76.8
27 TraesCS1D01G263100 chr6B 85.075 67 8 2 264 330 136798767 136798831 2.870000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G263100 chr1D 357431345 357435783 4438 False 8198.000000 8198 100.000 1 4439 1 chr1D.!!$F2 4438
1 TraesCS1D01G263100 chr1A 458504074 458507845 3771 False 2674.000000 4998 89.829 505 4266 2 chr1A.!!$F3 3761
2 TraesCS1D01G263100 chr1B 480818893 480822479 3586 False 1670.666667 2793 92.512 821 4209 3 chr1B.!!$F2 3388
3 TraesCS1D01G263100 chr3B 676894870 676895391 521 False 324.000000 324 78.113 2905 3429 1 chr3B.!!$F1 524
4 TraesCS1D01G263100 chr3A 649534962 649535483 521 False 302.000000 302 77.230 2905 3429 1 chr3A.!!$F1 524
5 TraesCS1D01G263100 chr3D 514647821 514648439 618 False 298.000000 298 75.637 2808 3429 1 chr3D.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.031994 GCCCTTCTCATCTCGAGCTC 59.968 60.0 7.81 2.73 41.98 4.09 F
623 625 0.755327 AAGTGTTGCTTGGGTGTCCC 60.755 55.0 0.00 0.00 45.71 4.46 F
626 628 0.847373 TGTTGCTTGGGTGTCCCTTA 59.153 50.0 6.38 0.00 45.70 2.69 F
2061 2111 0.601311 GTCAGAGCGAACCTTGTGCT 60.601 55.0 0.00 0.00 42.73 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 1992 0.036010 AGCCATCTCCTGTTGGAACG 60.036 55.0 0.00 0.0 42.66 3.95 R
1958 2008 0.179084 TCGTTCAATCCATCGGAGCC 60.179 55.0 0.00 0.0 34.05 4.70 R
2487 2579 1.031571 TCCATTTGCGTGATGCCTCC 61.032 55.0 0.00 0.0 45.60 4.30 R
3875 3976 0.104487 TTGGACCGTAAACGACAGCA 59.896 50.0 3.65 0.0 43.02 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.944871 GACACACAAGCCAAAGGTG 57.055 52.632 0.00 0.00 38.47 4.00
19 20 0.249031 GACACACAAGCCAAAGGTGC 60.249 55.000 0.00 0.00 36.00 5.01
20 21 0.969917 ACACACAAGCCAAAGGTGCA 60.970 50.000 0.00 0.00 36.00 4.57
21 22 0.175302 CACACAAGCCAAAGGTGCAA 59.825 50.000 0.00 0.00 36.00 4.08
22 23 0.901124 ACACAAGCCAAAGGTGCAAA 59.099 45.000 0.00 0.00 36.00 3.68
23 24 1.485895 ACACAAGCCAAAGGTGCAAAT 59.514 42.857 0.00 0.00 36.00 2.32
24 25 2.093021 ACACAAGCCAAAGGTGCAAATT 60.093 40.909 0.00 0.00 36.00 1.82
25 26 2.944349 CACAAGCCAAAGGTGCAAATTT 59.056 40.909 0.00 0.00 0.00 1.82
26 27 2.944349 ACAAGCCAAAGGTGCAAATTTG 59.056 40.909 14.03 14.03 36.40 2.32
27 28 2.944349 CAAGCCAAAGGTGCAAATTTGT 59.056 40.909 19.03 0.00 35.16 2.83
28 29 3.280197 AGCCAAAGGTGCAAATTTGTT 57.720 38.095 19.03 3.17 35.16 2.83
29 30 2.944349 AGCCAAAGGTGCAAATTTGTTG 59.056 40.909 19.03 14.03 35.16 3.33
30 31 2.541383 GCCAAAGGTGCAAATTTGTTGC 60.541 45.455 19.03 6.84 45.11 4.17
31 32 2.944349 CCAAAGGTGCAAATTTGTTGCT 59.056 40.909 19.03 0.00 45.13 3.91
32 33 3.242804 CCAAAGGTGCAAATTTGTTGCTG 60.243 43.478 19.03 9.33 45.13 4.41
33 34 1.585297 AGGTGCAAATTTGTTGCTGC 58.415 45.000 19.03 5.35 45.13 5.25
34 35 0.232816 GGTGCAAATTTGTTGCTGCG 59.767 50.000 19.03 0.00 45.13 5.18
35 36 0.232816 GTGCAAATTTGTTGCTGCGG 59.767 50.000 19.03 0.00 45.13 5.69
36 37 0.879400 TGCAAATTTGTTGCTGCGGG 60.879 50.000 19.03 0.00 45.13 6.13
37 38 0.879839 GCAAATTTGTTGCTGCGGGT 60.880 50.000 19.03 0.00 41.87 5.28
38 39 0.860533 CAAATTTGTTGCTGCGGGTG 59.139 50.000 10.15 0.00 0.00 4.61
39 40 0.249826 AAATTTGTTGCTGCGGGTGG 60.250 50.000 0.00 0.00 0.00 4.61
40 41 2.713927 AATTTGTTGCTGCGGGTGGC 62.714 55.000 0.00 0.00 43.96 5.01
41 42 4.892965 TTGTTGCTGCGGGTGGCT 62.893 61.111 0.00 0.00 44.05 4.75
71 72 6.724694 GCATATAGCAGAAAGAGAGATTGG 57.275 41.667 0.00 0.00 44.79 3.16
72 73 5.642919 GCATATAGCAGAAAGAGAGATTGGG 59.357 44.000 0.00 0.00 44.79 4.12
73 74 2.416680 AGCAGAAAGAGAGATTGGGC 57.583 50.000 0.00 0.00 0.00 5.36
74 75 1.012841 GCAGAAAGAGAGATTGGGCG 58.987 55.000 0.00 0.00 0.00 6.13
75 76 1.677217 GCAGAAAGAGAGATTGGGCGT 60.677 52.381 0.00 0.00 0.00 5.68
76 77 2.704572 CAGAAAGAGAGATTGGGCGTT 58.295 47.619 0.00 0.00 0.00 4.84
77 78 2.417933 CAGAAAGAGAGATTGGGCGTTG 59.582 50.000 0.00 0.00 0.00 4.10
78 79 2.303022 AGAAAGAGAGATTGGGCGTTGA 59.697 45.455 0.00 0.00 0.00 3.18
79 80 3.054802 AGAAAGAGAGATTGGGCGTTGAT 60.055 43.478 0.00 0.00 0.00 2.57
80 81 2.322355 AGAGAGATTGGGCGTTGATG 57.678 50.000 0.00 0.00 0.00 3.07
81 82 1.134280 AGAGAGATTGGGCGTTGATGG 60.134 52.381 0.00 0.00 0.00 3.51
82 83 0.620556 AGAGATTGGGCGTTGATGGT 59.379 50.000 0.00 0.00 0.00 3.55
83 84 0.734889 GAGATTGGGCGTTGATGGTG 59.265 55.000 0.00 0.00 0.00 4.17
84 85 1.139520 GATTGGGCGTTGATGGTGC 59.860 57.895 0.00 0.00 0.00 5.01
85 86 2.597117 GATTGGGCGTTGATGGTGCG 62.597 60.000 0.00 0.00 0.00 5.34
90 91 3.176661 CGTTGATGGTGCGCATGA 58.823 55.556 15.91 2.92 0.00 3.07
91 92 1.723273 CGTTGATGGTGCGCATGAT 59.277 52.632 15.91 8.85 0.00 2.45
92 93 0.316442 CGTTGATGGTGCGCATGATC 60.316 55.000 15.91 18.27 0.00 2.92
93 94 0.316442 GTTGATGGTGCGCATGATCG 60.316 55.000 15.91 0.00 0.00 3.69
101 102 2.127496 CGCATGATCGCCGATTGC 60.127 61.111 12.55 12.55 0.00 3.56
102 103 2.601398 CGCATGATCGCCGATTGCT 61.601 57.895 18.42 0.00 38.05 3.91
103 104 1.082300 GCATGATCGCCGATTGCTG 60.082 57.895 14.73 7.97 38.05 4.41
104 105 1.082300 CATGATCGCCGATTGCTGC 60.082 57.895 0.00 0.00 38.05 5.25
105 106 1.227764 ATGATCGCCGATTGCTGCT 60.228 52.632 0.00 0.00 38.05 4.24
106 107 1.226686 ATGATCGCCGATTGCTGCTC 61.227 55.000 0.00 0.00 38.05 4.26
107 108 1.593750 GATCGCCGATTGCTGCTCT 60.594 57.895 0.00 0.00 38.05 4.09
108 109 1.153289 ATCGCCGATTGCTGCTCTT 60.153 52.632 0.00 0.00 38.05 2.85
109 110 1.434622 ATCGCCGATTGCTGCTCTTG 61.435 55.000 0.00 0.00 38.05 3.02
110 111 2.796651 GCCGATTGCTGCTCTTGG 59.203 61.111 0.00 2.65 36.87 3.61
111 112 1.746615 GCCGATTGCTGCTCTTGGA 60.747 57.895 11.12 0.00 36.87 3.53
112 113 1.099879 GCCGATTGCTGCTCTTGGAT 61.100 55.000 11.12 0.00 36.87 3.41
113 114 0.661552 CCGATTGCTGCTCTTGGATG 59.338 55.000 0.00 0.00 0.00 3.51
114 115 1.376543 CGATTGCTGCTCTTGGATGT 58.623 50.000 0.00 0.00 0.00 3.06
115 116 1.329906 CGATTGCTGCTCTTGGATGTC 59.670 52.381 0.00 0.00 0.00 3.06
116 117 1.329906 GATTGCTGCTCTTGGATGTCG 59.670 52.381 0.00 0.00 0.00 4.35
117 118 1.300971 TTGCTGCTCTTGGATGTCGC 61.301 55.000 0.00 0.00 0.00 5.19
118 119 1.449246 GCTGCTCTTGGATGTCGCT 60.449 57.895 0.00 0.00 0.00 4.93
119 120 0.179100 GCTGCTCTTGGATGTCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
120 121 1.740380 GCTGCTCTTGGATGTCGCTAA 60.740 52.381 0.00 0.00 0.00 3.09
121 122 2.621338 CTGCTCTTGGATGTCGCTAAA 58.379 47.619 0.00 0.00 0.00 1.85
122 123 3.002791 CTGCTCTTGGATGTCGCTAAAA 58.997 45.455 0.00 0.00 0.00 1.52
123 124 3.609853 TGCTCTTGGATGTCGCTAAAAT 58.390 40.909 0.00 0.00 0.00 1.82
124 125 3.374988 TGCTCTTGGATGTCGCTAAAATG 59.625 43.478 0.00 0.00 0.00 2.32
125 126 3.623060 GCTCTTGGATGTCGCTAAAATGA 59.377 43.478 0.00 0.00 0.00 2.57
126 127 4.274459 GCTCTTGGATGTCGCTAAAATGAT 59.726 41.667 0.00 0.00 0.00 2.45
127 128 5.220931 GCTCTTGGATGTCGCTAAAATGATT 60.221 40.000 0.00 0.00 0.00 2.57
128 129 6.017934 GCTCTTGGATGTCGCTAAAATGATTA 60.018 38.462 0.00 0.00 0.00 1.75
129 130 7.308229 GCTCTTGGATGTCGCTAAAATGATTAT 60.308 37.037 0.00 0.00 0.00 1.28
130 131 8.450578 TCTTGGATGTCGCTAAAATGATTATT 57.549 30.769 0.00 0.00 0.00 1.40
131 132 9.554395 TCTTGGATGTCGCTAAAATGATTATTA 57.446 29.630 0.00 0.00 0.00 0.98
137 138 8.781067 TGTCGCTAAAATGATTATTATTGTGC 57.219 30.769 0.00 0.00 0.00 4.57
138 139 8.620416 TGTCGCTAAAATGATTATTATTGTGCT 58.380 29.630 0.00 0.00 0.00 4.40
155 156 9.969001 TTATTGTGCTAGTAGATTTTTAGGGTT 57.031 29.630 0.00 0.00 0.00 4.11
156 157 7.681939 TTGTGCTAGTAGATTTTTAGGGTTG 57.318 36.000 0.00 0.00 0.00 3.77
157 158 6.775708 TGTGCTAGTAGATTTTTAGGGTTGT 58.224 36.000 0.00 0.00 0.00 3.32
158 159 7.909518 TGTGCTAGTAGATTTTTAGGGTTGTA 58.090 34.615 0.00 0.00 0.00 2.41
159 160 8.038944 TGTGCTAGTAGATTTTTAGGGTTGTAG 58.961 37.037 0.00 0.00 0.00 2.74
160 161 8.039538 GTGCTAGTAGATTTTTAGGGTTGTAGT 58.960 37.037 0.00 0.00 0.00 2.73
161 162 9.258629 TGCTAGTAGATTTTTAGGGTTGTAGTA 57.741 33.333 0.00 0.00 0.00 1.82
173 174 9.701098 TTTAGGGTTGTAGTATTCTTATATGCG 57.299 33.333 0.00 0.00 0.00 4.73
174 175 7.534723 AGGGTTGTAGTATTCTTATATGCGA 57.465 36.000 0.00 0.00 0.00 5.10
175 176 7.959175 AGGGTTGTAGTATTCTTATATGCGAA 58.041 34.615 0.00 0.00 0.00 4.70
176 177 8.426489 AGGGTTGTAGTATTCTTATATGCGAAA 58.574 33.333 0.00 0.00 0.00 3.46
177 178 9.216117 GGGTTGTAGTATTCTTATATGCGAAAT 57.784 33.333 0.00 0.00 0.00 2.17
181 182 8.717821 TGTAGTATTCTTATATGCGAAATTGCC 58.282 33.333 0.00 0.00 0.00 4.52
182 183 7.145932 AGTATTCTTATATGCGAAATTGCCC 57.854 36.000 0.00 0.00 0.00 5.36
183 184 6.942576 AGTATTCTTATATGCGAAATTGCCCT 59.057 34.615 0.00 0.00 0.00 5.19
184 185 6.655078 ATTCTTATATGCGAAATTGCCCTT 57.345 33.333 0.00 0.00 0.00 3.95
185 186 5.689383 TCTTATATGCGAAATTGCCCTTC 57.311 39.130 0.00 0.00 0.00 3.46
186 187 5.376625 TCTTATATGCGAAATTGCCCTTCT 58.623 37.500 0.00 0.00 0.00 2.85
187 188 5.470098 TCTTATATGCGAAATTGCCCTTCTC 59.530 40.000 0.00 0.00 0.00 2.87
188 189 1.838112 ATGCGAAATTGCCCTTCTCA 58.162 45.000 0.00 0.00 0.00 3.27
189 190 1.838112 TGCGAAATTGCCCTTCTCAT 58.162 45.000 0.00 0.00 0.00 2.90
190 191 1.745087 TGCGAAATTGCCCTTCTCATC 59.255 47.619 0.00 0.00 0.00 2.92
191 192 2.019984 GCGAAATTGCCCTTCTCATCT 58.980 47.619 0.00 0.00 0.00 2.90
192 193 2.032675 GCGAAATTGCCCTTCTCATCTC 59.967 50.000 0.00 0.00 0.00 2.75
193 194 2.286294 CGAAATTGCCCTTCTCATCTCG 59.714 50.000 0.00 0.00 0.00 4.04
194 195 3.535561 GAAATTGCCCTTCTCATCTCGA 58.464 45.455 0.00 0.00 0.00 4.04
195 196 2.906691 ATTGCCCTTCTCATCTCGAG 57.093 50.000 5.93 5.93 43.80 4.04
196 197 0.176680 TTGCCCTTCTCATCTCGAGC 59.823 55.000 7.81 0.00 41.98 5.03
197 198 0.685785 TGCCCTTCTCATCTCGAGCT 60.686 55.000 7.81 0.00 41.98 4.09
198 199 0.031994 GCCCTTCTCATCTCGAGCTC 59.968 60.000 7.81 2.73 41.98 4.09
199 200 1.397672 CCCTTCTCATCTCGAGCTCA 58.602 55.000 15.40 0.00 41.98 4.26
200 201 1.066908 CCCTTCTCATCTCGAGCTCAC 59.933 57.143 15.40 0.00 41.98 3.51
201 202 1.747924 CCTTCTCATCTCGAGCTCACA 59.252 52.381 15.40 0.00 41.98 3.58
202 203 2.165234 CCTTCTCATCTCGAGCTCACAA 59.835 50.000 15.40 0.00 41.98 3.33
203 204 3.437428 CTTCTCATCTCGAGCTCACAAG 58.563 50.000 15.40 7.93 41.98 3.16
204 205 2.716217 TCTCATCTCGAGCTCACAAGA 58.284 47.619 15.40 13.15 41.98 3.02
205 206 3.286353 TCTCATCTCGAGCTCACAAGAT 58.714 45.455 15.40 14.80 41.98 2.40
206 207 3.314913 TCTCATCTCGAGCTCACAAGATC 59.685 47.826 15.40 0.00 41.98 2.75
207 208 3.286353 TCATCTCGAGCTCACAAGATCT 58.714 45.455 15.40 0.00 35.73 2.75
208 209 3.314913 TCATCTCGAGCTCACAAGATCTC 59.685 47.826 15.40 0.00 35.73 2.75
213 214 2.741612 GAGCTCACAAGATCTCGGATG 58.258 52.381 9.40 0.00 35.01 3.51
214 215 2.360483 GAGCTCACAAGATCTCGGATGA 59.640 50.000 9.40 0.00 35.01 2.92
215 216 2.762887 AGCTCACAAGATCTCGGATGAA 59.237 45.455 0.00 0.00 0.00 2.57
216 217 2.863137 GCTCACAAGATCTCGGATGAAC 59.137 50.000 0.00 0.00 0.00 3.18
217 218 3.677148 GCTCACAAGATCTCGGATGAACA 60.677 47.826 0.00 0.00 0.00 3.18
218 219 4.111198 CTCACAAGATCTCGGATGAACAG 58.889 47.826 0.00 0.00 0.00 3.16
219 220 3.511540 TCACAAGATCTCGGATGAACAGT 59.488 43.478 0.00 0.00 0.00 3.55
220 221 4.705023 TCACAAGATCTCGGATGAACAGTA 59.295 41.667 0.00 0.00 0.00 2.74
221 222 5.185056 TCACAAGATCTCGGATGAACAGTAA 59.815 40.000 0.00 0.00 0.00 2.24
222 223 5.869344 CACAAGATCTCGGATGAACAGTAAA 59.131 40.000 0.00 0.00 0.00 2.01
223 224 6.368791 CACAAGATCTCGGATGAACAGTAAAA 59.631 38.462 0.00 0.00 0.00 1.52
224 225 7.065085 CACAAGATCTCGGATGAACAGTAAAAT 59.935 37.037 0.00 0.00 0.00 1.82
225 226 8.258007 ACAAGATCTCGGATGAACAGTAAAATA 58.742 33.333 0.00 0.00 0.00 1.40
226 227 9.098355 CAAGATCTCGGATGAACAGTAAAATAA 57.902 33.333 0.00 0.00 0.00 1.40
227 228 9.667107 AAGATCTCGGATGAACAGTAAAATAAA 57.333 29.630 0.00 0.00 0.00 1.40
228 229 9.667107 AGATCTCGGATGAACAGTAAAATAAAA 57.333 29.630 0.00 0.00 0.00 1.52
269 270 9.875675 TTTGTGACAAATATTTAAAATGCTTGC 57.124 25.926 6.66 0.00 0.00 4.01
270 271 8.599055 TGTGACAAATATTTAAAATGCTTGCA 57.401 26.923 0.00 0.00 0.00 4.08
271 272 9.049523 TGTGACAAATATTTAAAATGCTTGCAA 57.950 25.926 0.00 0.00 0.00 4.08
272 273 9.875675 GTGACAAATATTTAAAATGCTTGCAAA 57.124 25.926 0.00 0.00 0.00 3.68
303 304 5.649782 ATGGAATGACAATTGTGGAAGTC 57.350 39.130 17.58 9.78 0.00 3.01
304 305 3.501828 TGGAATGACAATTGTGGAAGTCG 59.498 43.478 17.58 0.00 33.83 4.18
305 306 3.502211 GGAATGACAATTGTGGAAGTCGT 59.498 43.478 17.58 0.00 33.83 4.34
306 307 4.466828 GAATGACAATTGTGGAAGTCGTG 58.533 43.478 17.58 0.00 33.83 4.35
307 308 2.217750 TGACAATTGTGGAAGTCGTGG 58.782 47.619 17.58 0.00 33.83 4.94
308 309 0.951558 ACAATTGTGGAAGTCGTGGC 59.048 50.000 11.07 0.00 0.00 5.01
309 310 0.950836 CAATTGTGGAAGTCGTGGCA 59.049 50.000 0.00 0.00 0.00 4.92
310 311 1.336440 CAATTGTGGAAGTCGTGGCAA 59.664 47.619 0.00 0.00 0.00 4.52
311 312 1.686355 ATTGTGGAAGTCGTGGCAAA 58.314 45.000 0.00 0.00 0.00 3.68
312 313 1.464734 TTGTGGAAGTCGTGGCAAAA 58.535 45.000 0.00 0.00 0.00 2.44
313 314 1.464734 TGTGGAAGTCGTGGCAAAAA 58.535 45.000 0.00 0.00 0.00 1.94
335 336 7.530426 AAAAGAATCAGCACTCCAAAATACT 57.470 32.000 0.00 0.00 0.00 2.12
336 337 7.530426 AAAGAATCAGCACTCCAAAATACTT 57.470 32.000 0.00 0.00 0.00 2.24
337 338 7.530426 AAGAATCAGCACTCCAAAATACTTT 57.470 32.000 0.00 0.00 0.00 2.66
338 339 7.530426 AGAATCAGCACTCCAAAATACTTTT 57.470 32.000 0.00 0.00 0.00 2.27
359 360 9.171877 ACTTTTGAAAATAACATTTTTGGAGCA 57.828 25.926 0.00 0.00 0.00 4.26
362 363 8.899427 TTGAAAATAACATTTTTGGAGCATCA 57.101 26.923 0.00 0.00 36.25 3.07
363 364 8.899427 TGAAAATAACATTTTTGGAGCATCAA 57.101 26.923 0.00 0.00 36.25 2.57
364 365 8.991026 TGAAAATAACATTTTTGGAGCATCAAG 58.009 29.630 0.00 0.00 36.25 3.02
365 366 8.907222 AAAATAACATTTTTGGAGCATCAAGT 57.093 26.923 0.00 0.00 36.25 3.16
366 367 8.907222 AAATAACATTTTTGGAGCATCAAGTT 57.093 26.923 0.00 0.00 36.25 2.66
367 368 8.907222 AATAACATTTTTGGAGCATCAAGTTT 57.093 26.923 0.00 0.00 36.25 2.66
368 369 8.907222 ATAACATTTTTGGAGCATCAAGTTTT 57.093 26.923 0.00 0.00 36.25 2.43
369 370 7.628769 AACATTTTTGGAGCATCAAGTTTTT 57.371 28.000 0.00 0.00 36.25 1.94
393 394 9.853555 TTTTTCATGTCTTGCACGAATATTATT 57.146 25.926 0.00 0.00 28.90 1.40
394 395 9.502145 TTTTCATGTCTTGCACGAATATTATTC 57.498 29.630 6.37 6.37 28.90 1.75
395 396 7.189693 TCATGTCTTGCACGAATATTATTCC 57.810 36.000 10.17 0.00 0.00 3.01
396 397 6.765512 TCATGTCTTGCACGAATATTATTCCA 59.234 34.615 10.17 1.43 0.00 3.53
397 398 7.445096 TCATGTCTTGCACGAATATTATTCCAT 59.555 33.333 10.17 3.70 0.00 3.41
398 399 6.958255 TGTCTTGCACGAATATTATTCCATG 58.042 36.000 10.17 9.78 0.00 3.66
399 400 6.765512 TGTCTTGCACGAATATTATTCCATGA 59.234 34.615 14.93 10.30 0.00 3.07
400 401 7.445096 TGTCTTGCACGAATATTATTCCATGAT 59.555 33.333 14.93 0.00 0.00 2.45
401 402 7.747799 GTCTTGCACGAATATTATTCCATGATG 59.252 37.037 14.93 6.99 0.00 3.07
402 403 7.661027 TCTTGCACGAATATTATTCCATGATGA 59.339 33.333 14.93 8.80 0.00 2.92
403 404 7.742556 TGCACGAATATTATTCCATGATGAA 57.257 32.000 14.93 0.00 0.00 2.57
404 405 8.164058 TGCACGAATATTATTCCATGATGAAA 57.836 30.769 14.93 0.00 0.00 2.69
405 406 8.795513 TGCACGAATATTATTCCATGATGAAAT 58.204 29.630 14.93 0.00 0.00 2.17
406 407 9.069078 GCACGAATATTATTCCATGATGAAATG 57.931 33.333 14.93 1.08 0.00 2.32
486 487 6.452494 TTTTGAATTTTACTGTTCACCCGA 57.548 33.333 0.00 0.00 34.34 5.14
487 488 5.682943 TTGAATTTTACTGTTCACCCGAG 57.317 39.130 0.00 0.00 34.34 4.63
488 489 4.963373 TGAATTTTACTGTTCACCCGAGA 58.037 39.130 0.00 0.00 29.93 4.04
489 490 5.556915 TGAATTTTACTGTTCACCCGAGAT 58.443 37.500 0.00 0.00 29.93 2.75
490 491 5.642063 TGAATTTTACTGTTCACCCGAGATC 59.358 40.000 0.00 0.00 29.93 2.75
491 492 4.610605 TTTTACTGTTCACCCGAGATCA 57.389 40.909 0.00 0.00 0.00 2.92
492 493 3.587797 TTACTGTTCACCCGAGATCAC 57.412 47.619 0.00 0.00 0.00 3.06
493 494 1.338107 ACTGTTCACCCGAGATCACA 58.662 50.000 0.00 0.00 0.00 3.58
494 495 1.902508 ACTGTTCACCCGAGATCACAT 59.097 47.619 0.00 0.00 0.00 3.21
495 496 2.274437 CTGTTCACCCGAGATCACATG 58.726 52.381 0.00 0.00 0.00 3.21
496 497 1.899142 TGTTCACCCGAGATCACATGA 59.101 47.619 0.00 0.00 0.00 3.07
497 498 2.301583 TGTTCACCCGAGATCACATGAA 59.698 45.455 0.00 0.00 0.00 2.57
498 499 2.672961 TCACCCGAGATCACATGAAC 57.327 50.000 0.00 0.00 0.00 3.18
499 500 2.179427 TCACCCGAGATCACATGAACT 58.821 47.619 0.00 0.00 0.00 3.01
500 501 2.166459 TCACCCGAGATCACATGAACTC 59.834 50.000 0.00 8.66 39.63 3.01
516 517 2.853731 ACTCGAGCTCAGATAAACCG 57.146 50.000 13.61 0.00 0.00 4.44
517 518 2.093106 ACTCGAGCTCAGATAAACCGT 58.907 47.619 13.61 2.83 0.00 4.83
524 525 2.166664 GCTCAGATAAACCGTGTCCTCT 59.833 50.000 0.00 0.00 0.00 3.69
529 530 4.863131 CAGATAAACCGTGTCCTCTTACAC 59.137 45.833 0.00 0.00 45.10 2.90
530 531 2.538512 AAACCGTGTCCTCTTACACC 57.461 50.000 1.82 0.00 45.66 4.16
565 566 7.526041 TGTTGGTTGCAATAATAGGAGGATAT 58.474 34.615 0.59 0.00 0.00 1.63
598 600 6.165700 AGCTTGTTGGAGATGTTTCATTTT 57.834 33.333 0.00 0.00 0.00 1.82
609 611 7.042797 AGATGTTTCATTTTGCACTAAGTGT 57.957 32.000 0.00 0.00 35.75 3.55
610 612 7.491682 AGATGTTTCATTTTGCACTAAGTGTT 58.508 30.769 0.00 0.00 35.75 3.32
616 618 3.435105 TTTGCACTAAGTGTTGCTTGG 57.565 42.857 0.00 0.00 40.91 3.61
617 619 1.317613 TGCACTAAGTGTTGCTTGGG 58.682 50.000 0.00 0.00 39.63 4.12
618 620 1.318576 GCACTAAGTGTTGCTTGGGT 58.681 50.000 0.00 0.00 39.63 4.51
619 621 1.001378 GCACTAAGTGTTGCTTGGGTG 60.001 52.381 0.00 0.00 39.63 4.61
620 622 2.297701 CACTAAGTGTTGCTTGGGTGT 58.702 47.619 0.00 0.00 39.63 4.16
621 623 2.290641 CACTAAGTGTTGCTTGGGTGTC 59.709 50.000 0.00 0.00 39.63 3.67
622 624 1.880027 CTAAGTGTTGCTTGGGTGTCC 59.120 52.381 0.00 0.00 38.05 4.02
623 625 0.755327 AAGTGTTGCTTGGGTGTCCC 60.755 55.000 0.00 0.00 45.71 4.46
624 626 1.152756 GTGTTGCTTGGGTGTCCCT 60.153 57.895 6.38 0.00 45.70 4.20
625 627 0.755327 GTGTTGCTTGGGTGTCCCTT 60.755 55.000 6.38 0.00 45.70 3.95
626 628 0.847373 TGTTGCTTGGGTGTCCCTTA 59.153 50.000 6.38 0.00 45.70 2.69
646 648 7.982354 TCCCTTAGGTGTTGTTTGTTTATTTTG 59.018 33.333 0.00 0.00 0.00 2.44
674 676 1.135199 TCTTGTTATCGGAGGTCGCAC 60.135 52.381 0.00 0.00 39.05 5.34
689 691 2.094390 GTCGCACCAGGACTGTGTTATA 60.094 50.000 0.00 0.00 0.00 0.98
691 693 2.930040 CGCACCAGGACTGTGTTATAAG 59.070 50.000 0.00 0.00 0.00 1.73
695 697 5.106673 GCACCAGGACTGTGTTATAAGTTTC 60.107 44.000 0.00 0.00 0.00 2.78
699 701 8.380099 ACCAGGACTGTGTTATAAGTTTCATTA 58.620 33.333 0.00 0.00 0.00 1.90
731 733 2.440409 TGAAATTGGAAGCTCTGCTCC 58.560 47.619 0.00 0.00 38.25 4.70
739 741 1.855360 GAAGCTCTGCTCCGTAATTCG 59.145 52.381 0.00 0.00 38.25 3.34
783 785 3.266964 GCAAGTCCATGCGCTGAA 58.733 55.556 9.73 0.00 36.45 3.02
788 790 2.642139 AGTCCATGCGCTGAATTTTG 57.358 45.000 9.73 0.00 0.00 2.44
795 797 3.717400 TGCGCTGAATTTTGTGGTAAA 57.283 38.095 9.73 0.00 0.00 2.01
797 799 4.047822 TGCGCTGAATTTTGTGGTAAAAG 58.952 39.130 9.73 0.00 0.00 2.27
799 801 4.742659 GCGCTGAATTTTGTGGTAAAAGAA 59.257 37.500 0.00 0.00 0.00 2.52
1304 1351 1.466558 GAGCTGGTGCAAAAGTAGAGC 59.533 52.381 0.00 0.00 42.74 4.09
1381 1428 2.063266 GTTACGGTTTGATGCTGTCGA 58.937 47.619 0.00 0.00 0.00 4.20
1385 1432 1.026718 GGTTTGATGCTGTCGAGGGG 61.027 60.000 0.00 0.00 0.00 4.79
1420 1467 1.344114 ACAATCGGTGCCATTTTTGCT 59.656 42.857 0.00 0.00 0.00 3.91
1425 1472 1.539388 CGGTGCCATTTTTGCTGACTA 59.461 47.619 0.00 0.00 0.00 2.59
1507 1555 3.810310 ATTTGAAGAGTAGCTCTCCCG 57.190 47.619 0.00 0.00 40.28 5.14
1540 1588 2.826128 AGTCGAACTGTTCCTGATGCTA 59.174 45.455 14.48 0.00 0.00 3.49
1570 1620 4.099419 TCAGATGGAAATTCGGAGAATCGA 59.901 41.667 0.00 0.00 45.90 3.59
1608 1658 1.542915 CTGGTGCATGAACCTTGGAAG 59.457 52.381 23.90 8.55 41.16 3.46
1641 1691 0.939419 AGGCGTGGTTTCGTGTTTAC 59.061 50.000 0.00 0.00 0.00 2.01
1739 1789 6.341316 TGATAGCTTGGCTACTTCAAGTAAG 58.659 40.000 0.00 0.00 44.24 2.34
1743 1793 4.319177 CTTGGCTACTTCAAGTAAGCACT 58.681 43.478 16.19 0.00 38.93 4.40
1791 1841 6.782150 AGCTTTTGAAGTGTAAACAGTGTAC 58.218 36.000 0.00 0.00 0.00 2.90
1800 1850 4.209911 GTGTAAACAGTGTACGAGGAAACC 59.790 45.833 0.00 0.00 0.00 3.27
1936 1986 0.955428 TTCATGCAGGAAGTGGCGAC 60.955 55.000 10.22 0.00 0.00 5.19
1958 2008 2.283298 CATCCGTTCCAACAGGAGATG 58.717 52.381 8.36 0.00 35.93 2.90
1986 2036 1.142060 TGGATTGAACGAACCACCTGT 59.858 47.619 0.00 0.00 0.00 4.00
2061 2111 0.601311 GTCAGAGCGAACCTTGTGCT 60.601 55.000 0.00 0.00 42.73 4.40
2084 2134 1.380302 GAACAGGTGAGGGTGGCAT 59.620 57.895 0.00 0.00 0.00 4.40
2110 2160 8.148351 TGTTTGTAGTAACAATCTGTAGAGCTT 58.852 33.333 0.00 0.00 44.85 3.74
2194 2275 3.982730 TCATGATCACCCCCTGACATTAT 59.017 43.478 0.00 0.00 0.00 1.28
2245 2326 6.870965 ACAGTGAGTTGATCTTAGCTAGTTTG 59.129 38.462 0.00 0.00 0.00 2.93
2386 2478 2.483877 TGTCTTCAATTAGGCGTTGCAG 59.516 45.455 0.00 0.00 0.00 4.41
2495 2587 2.288152 TGCGAAAAGTTTTGGAGGCATC 60.288 45.455 13.83 0.00 0.00 3.91
2526 2618 4.078571 TGGATCCTCTCTGGTACCTTATGT 60.079 45.833 14.23 0.00 37.07 2.29
2585 2677 4.107622 CTGCTGTTTCTCAAACCTTGTTG 58.892 43.478 0.00 0.00 40.67 3.33
2677 2769 4.495911 AAAGAGAAGCAAAGCAAGTAGC 57.504 40.909 0.00 0.00 46.19 3.58
2714 2806 6.936279 ACTTGGGTTATATCATATCCGTCTG 58.064 40.000 0.00 0.00 0.00 3.51
2717 2809 7.311092 TGGGTTATATCATATCCGTCTGTTT 57.689 36.000 0.00 0.00 0.00 2.83
3291 3383 3.214253 CTGAGCGAGATCAGGGCA 58.786 61.111 10.23 0.00 42.52 5.36
3369 3461 0.043940 ATCCTTCCTGCCTCTGGACT 59.956 55.000 0.00 0.00 31.34 3.85
3544 3637 4.456914 GAACACGTTTACGGTGTAAATGG 58.543 43.478 19.93 13.50 44.95 3.16
3875 3976 2.818432 CTGCATTTCCTTTCTGCTGTCT 59.182 45.455 0.00 0.00 36.84 3.41
3877 3978 2.670509 GCATTTCCTTTCTGCTGTCTGC 60.671 50.000 0.00 0.00 43.25 4.26
3878 3979 2.645838 TTTCCTTTCTGCTGTCTGCT 57.354 45.000 3.20 0.00 43.37 4.24
3879 3980 1.888215 TTCCTTTCTGCTGTCTGCTG 58.112 50.000 3.20 2.92 43.37 4.41
3880 3981 0.761187 TCCTTTCTGCTGTCTGCTGT 59.239 50.000 3.20 0.00 43.37 4.40
3881 3982 1.155042 CCTTTCTGCTGTCTGCTGTC 58.845 55.000 3.20 0.00 43.37 3.51
3882 3983 0.788995 CTTTCTGCTGTCTGCTGTCG 59.211 55.000 3.20 0.00 43.37 4.35
3883 3984 0.104855 TTTCTGCTGTCTGCTGTCGT 59.895 50.000 3.20 0.00 43.37 4.34
3884 3985 0.104855 TTCTGCTGTCTGCTGTCGTT 59.895 50.000 3.20 0.00 43.37 3.85
3885 3986 0.104855 TCTGCTGTCTGCTGTCGTTT 59.895 50.000 3.20 0.00 43.37 3.60
3886 3987 1.339929 TCTGCTGTCTGCTGTCGTTTA 59.660 47.619 3.20 0.00 43.37 2.01
3953 4054 1.068588 TGGAACCTTCTGTCGTGTCAG 59.931 52.381 0.00 0.00 36.85 3.51
4015 4311 3.256631 GGCAAGACCAACATTCAACAGAT 59.743 43.478 0.00 0.00 38.86 2.90
4025 4321 5.818136 ACATTCAACAGATATCAAACGGG 57.182 39.130 5.32 0.00 0.00 5.28
4037 4333 1.202604 TCAAACGGGTCTGGTCAAGTC 60.203 52.381 0.00 0.00 0.00 3.01
4075 4371 3.055602 TGTGATCCACTGAATCCACTGAG 60.056 47.826 0.00 0.00 35.11 3.35
4129 4425 3.777925 CGAACTTGCTGACCGCCG 61.778 66.667 0.00 0.00 38.05 6.46
4201 4500 4.702131 GTGGAGCAGTACATTTTGGAATCT 59.298 41.667 0.00 0.00 0.00 2.40
4211 4510 9.614792 AGTACATTTTGGAATCTATAGAACCAC 57.385 33.333 23.05 14.11 35.49 4.16
4212 4511 9.614792 GTACATTTTGGAATCTATAGAACCACT 57.385 33.333 23.05 13.08 35.49 4.00
4225 4532 8.877195 TCTATAGAACCACTAACTTTGGAGTTT 58.123 33.333 0.00 0.00 43.48 2.66
4237 4544 5.751586 ACTTTGGAGTTTCTACACTTTGGA 58.248 37.500 0.00 0.00 29.87 3.53
4240 4547 5.367945 TGGAGTTTCTACACTTTGGAACT 57.632 39.130 0.00 0.00 0.00 3.01
4278 4585 4.803426 CGAGCCCGAGCAGGTCAC 62.803 72.222 0.00 0.00 43.56 3.67
4279 4586 3.695606 GAGCCCGAGCAGGTCACA 61.696 66.667 0.00 0.00 43.56 3.58
4280 4587 3.941657 GAGCCCGAGCAGGTCACAC 62.942 68.421 0.00 0.00 43.56 3.82
4283 4590 4.363990 CCGAGCAGGTCACACGCT 62.364 66.667 0.00 0.00 39.12 5.07
4284 4591 2.356313 CGAGCAGGTCACACGCTT 60.356 61.111 0.00 0.00 35.75 4.68
4285 4592 2.661566 CGAGCAGGTCACACGCTTG 61.662 63.158 0.00 0.00 35.75 4.01
4286 4593 2.959357 GAGCAGGTCACACGCTTGC 61.959 63.158 0.00 0.00 35.75 4.01
4287 4594 3.279116 GCAGGTCACACGCTTGCA 61.279 61.111 0.00 0.00 0.00 4.08
4288 4595 2.941333 CAGGTCACACGCTTGCAG 59.059 61.111 0.00 0.00 0.00 4.41
4289 4596 1.595109 CAGGTCACACGCTTGCAGA 60.595 57.895 0.00 0.00 0.00 4.26
4290 4597 0.952497 CAGGTCACACGCTTGCAGAT 60.952 55.000 0.00 0.00 0.00 2.90
4291 4598 0.608130 AGGTCACACGCTTGCAGATA 59.392 50.000 0.00 0.00 0.00 1.98
4292 4599 1.208052 AGGTCACACGCTTGCAGATAT 59.792 47.619 0.00 0.00 0.00 1.63
4293 4600 1.328680 GGTCACACGCTTGCAGATATG 59.671 52.381 0.00 0.00 0.00 1.78
4294 4601 1.328680 GTCACACGCTTGCAGATATGG 59.671 52.381 0.00 0.00 0.00 2.74
4295 4602 1.206849 TCACACGCTTGCAGATATGGA 59.793 47.619 0.00 0.00 0.00 3.41
4296 4603 1.596260 CACACGCTTGCAGATATGGAG 59.404 52.381 0.00 0.00 0.00 3.86
4297 4604 1.208052 ACACGCTTGCAGATATGGAGT 59.792 47.619 0.00 0.00 0.00 3.85
4298 4605 2.430694 ACACGCTTGCAGATATGGAGTA 59.569 45.455 0.00 0.00 0.00 2.59
4299 4606 3.055591 CACGCTTGCAGATATGGAGTAG 58.944 50.000 0.00 0.00 0.00 2.57
4300 4607 2.064762 CGCTTGCAGATATGGAGTAGC 58.935 52.381 0.00 0.00 0.00 3.58
4301 4608 2.546584 CGCTTGCAGATATGGAGTAGCA 60.547 50.000 6.38 0.00 0.00 3.49
4302 4609 3.065655 GCTTGCAGATATGGAGTAGCAG 58.934 50.000 1.18 0.00 33.14 4.24
4303 4610 3.244009 GCTTGCAGATATGGAGTAGCAGA 60.244 47.826 1.18 0.00 33.14 4.26
4304 4611 4.558178 CTTGCAGATATGGAGTAGCAGAG 58.442 47.826 0.00 0.00 33.14 3.35
4305 4612 3.837355 TGCAGATATGGAGTAGCAGAGA 58.163 45.455 0.00 0.00 0.00 3.10
4306 4613 4.218312 TGCAGATATGGAGTAGCAGAGAA 58.782 43.478 0.00 0.00 0.00 2.87
4307 4614 4.837298 TGCAGATATGGAGTAGCAGAGAAT 59.163 41.667 0.00 0.00 0.00 2.40
4308 4615 5.306419 TGCAGATATGGAGTAGCAGAGAATT 59.694 40.000 0.00 0.00 0.00 2.17
4309 4616 5.638657 GCAGATATGGAGTAGCAGAGAATTG 59.361 44.000 0.00 0.00 0.00 2.32
4310 4617 5.638657 CAGATATGGAGTAGCAGAGAATTGC 59.361 44.000 0.00 0.00 44.41 3.56
4311 4618 3.920231 ATGGAGTAGCAGAGAATTGCA 57.080 42.857 0.52 0.00 46.47 4.08
4312 4619 2.977914 TGGAGTAGCAGAGAATTGCAC 58.022 47.619 0.52 0.00 46.47 4.57
4313 4620 2.284190 GGAGTAGCAGAGAATTGCACC 58.716 52.381 0.52 0.00 46.47 5.01
4314 4621 2.355108 GGAGTAGCAGAGAATTGCACCA 60.355 50.000 0.52 0.00 46.47 4.17
4315 4622 2.675348 GAGTAGCAGAGAATTGCACCAC 59.325 50.000 0.52 0.00 46.47 4.16
4316 4623 1.740025 GTAGCAGAGAATTGCACCACC 59.260 52.381 0.52 0.00 46.47 4.61
4317 4624 0.403271 AGCAGAGAATTGCACCACCT 59.597 50.000 0.52 0.00 46.47 4.00
4318 4625 0.807496 GCAGAGAATTGCACCACCTC 59.193 55.000 0.00 0.00 43.53 3.85
4319 4626 1.457346 CAGAGAATTGCACCACCTCC 58.543 55.000 0.00 0.00 0.00 4.30
4320 4627 1.067295 AGAGAATTGCACCACCTCCA 58.933 50.000 0.00 0.00 0.00 3.86
4321 4628 1.168714 GAGAATTGCACCACCTCCAC 58.831 55.000 0.00 0.00 0.00 4.02
4322 4629 0.478072 AGAATTGCACCACCTCCACA 59.522 50.000 0.00 0.00 0.00 4.17
4323 4630 0.598065 GAATTGCACCACCTCCACAC 59.402 55.000 0.00 0.00 0.00 3.82
4324 4631 0.106268 AATTGCACCACCTCCACACA 60.106 50.000 0.00 0.00 0.00 3.72
4325 4632 0.112995 ATTGCACCACCTCCACACAT 59.887 50.000 0.00 0.00 0.00 3.21
4326 4633 0.106268 TTGCACCACCTCCACACATT 60.106 50.000 0.00 0.00 0.00 2.71
4327 4634 0.106268 TGCACCACCTCCACACATTT 60.106 50.000 0.00 0.00 0.00 2.32
4328 4635 0.598065 GCACCACCTCCACACATTTC 59.402 55.000 0.00 0.00 0.00 2.17
4329 4636 1.979855 CACCACCTCCACACATTTCA 58.020 50.000 0.00 0.00 0.00 2.69
4330 4637 2.517959 CACCACCTCCACACATTTCAT 58.482 47.619 0.00 0.00 0.00 2.57
4331 4638 3.684908 CACCACCTCCACACATTTCATA 58.315 45.455 0.00 0.00 0.00 2.15
4332 4639 3.691118 CACCACCTCCACACATTTCATAG 59.309 47.826 0.00 0.00 0.00 2.23
4333 4640 3.330701 ACCACCTCCACACATTTCATAGT 59.669 43.478 0.00 0.00 0.00 2.12
4334 4641 3.691118 CCACCTCCACACATTTCATAGTG 59.309 47.826 0.00 0.00 41.40 2.74
4335 4642 3.127548 CACCTCCACACATTTCATAGTGC 59.872 47.826 0.00 0.00 39.30 4.40
4336 4643 3.244875 ACCTCCACACATTTCATAGTGCA 60.245 43.478 0.00 0.00 39.30 4.57
4337 4644 3.949754 CCTCCACACATTTCATAGTGCAT 59.050 43.478 0.00 0.00 39.30 3.96
4338 4645 4.201980 CCTCCACACATTTCATAGTGCATG 60.202 45.833 0.00 0.00 39.30 4.06
4339 4646 4.334552 TCCACACATTTCATAGTGCATGT 58.665 39.130 0.00 0.00 39.30 3.21
4340 4647 4.395854 TCCACACATTTCATAGTGCATGTC 59.604 41.667 0.00 0.00 39.30 3.06
4341 4648 4.439153 CCACACATTTCATAGTGCATGTCC 60.439 45.833 0.00 0.00 39.30 4.02
4342 4649 3.696051 ACACATTTCATAGTGCATGTCCC 59.304 43.478 0.00 0.00 39.30 4.46
4343 4650 3.949754 CACATTTCATAGTGCATGTCCCT 59.050 43.478 0.00 0.00 35.96 4.20
4344 4651 3.949754 ACATTTCATAGTGCATGTCCCTG 59.050 43.478 0.00 0.00 35.96 4.45
4345 4652 3.719268 TTTCATAGTGCATGTCCCTGT 57.281 42.857 0.00 0.00 35.96 4.00
4346 4653 4.835284 TTTCATAGTGCATGTCCCTGTA 57.165 40.909 0.00 0.00 35.96 2.74
4347 4654 4.406648 TTCATAGTGCATGTCCCTGTAG 57.593 45.455 0.00 0.00 35.96 2.74
4348 4655 2.103094 TCATAGTGCATGTCCCTGTAGC 59.897 50.000 0.00 0.00 35.96 3.58
4349 4656 0.830648 TAGTGCATGTCCCTGTAGCC 59.169 55.000 0.00 0.00 0.00 3.93
4350 4657 0.911525 AGTGCATGTCCCTGTAGCCT 60.912 55.000 0.00 0.00 0.00 4.58
4351 4658 0.745845 GTGCATGTCCCTGTAGCCTG 60.746 60.000 0.00 0.00 0.00 4.85
4352 4659 1.200760 TGCATGTCCCTGTAGCCTGT 61.201 55.000 0.00 0.00 0.00 4.00
4353 4660 0.830648 GCATGTCCCTGTAGCCTGTA 59.169 55.000 0.00 0.00 0.00 2.74
4354 4661 1.202580 GCATGTCCCTGTAGCCTGTAG 60.203 57.143 0.00 0.00 0.00 2.74
4355 4662 1.414181 CATGTCCCTGTAGCCTGTAGG 59.586 57.143 0.00 0.00 38.53 3.18
4359 4666 2.128729 CCTGTAGCCTGTAGGGAGC 58.871 63.158 0.00 0.00 37.23 4.70
4360 4667 1.736586 CTGTAGCCTGTAGGGAGCG 59.263 63.158 0.00 0.00 37.23 5.03
4361 4668 1.000019 TGTAGCCTGTAGGGAGCGT 60.000 57.895 0.00 0.00 37.23 5.07
4362 4669 1.320344 TGTAGCCTGTAGGGAGCGTG 61.320 60.000 0.00 0.00 37.23 5.34
4363 4670 2.423898 TAGCCTGTAGGGAGCGTGC 61.424 63.158 0.00 0.00 37.23 5.34
4364 4671 4.082523 GCCTGTAGGGAGCGTGCA 62.083 66.667 0.00 0.00 37.23 4.57
4365 4672 2.903357 CCTGTAGGGAGCGTGCAT 59.097 61.111 0.00 0.00 37.23 3.96
4366 4673 1.227380 CCTGTAGGGAGCGTGCATC 60.227 63.158 0.00 0.00 37.23 3.91
4367 4674 1.227380 CTGTAGGGAGCGTGCATCC 60.227 63.158 0.00 0.00 35.99 3.51
4368 4675 1.960040 CTGTAGGGAGCGTGCATCCA 61.960 60.000 7.13 0.00 38.70 3.41
4369 4676 1.337384 TGTAGGGAGCGTGCATCCAT 61.337 55.000 7.13 2.27 38.70 3.41
4370 4677 0.679505 GTAGGGAGCGTGCATCCATA 59.320 55.000 7.13 1.27 38.70 2.74
4371 4678 1.276421 GTAGGGAGCGTGCATCCATAT 59.724 52.381 7.13 0.00 35.70 1.78
4372 4679 0.767375 AGGGAGCGTGCATCCATATT 59.233 50.000 7.13 0.00 38.70 1.28
4373 4680 0.877071 GGGAGCGTGCATCCATATTG 59.123 55.000 7.13 0.00 38.70 1.90
4374 4681 0.877071 GGAGCGTGCATCCATATTGG 59.123 55.000 0.00 0.00 39.43 3.16
4384 4691 2.627515 TCCATATTGGAGCACTGAGC 57.372 50.000 0.00 0.00 42.67 4.26
4385 4692 1.839354 TCCATATTGGAGCACTGAGCA 59.161 47.619 0.00 0.00 42.67 4.26
4386 4693 2.420547 TCCATATTGGAGCACTGAGCAC 60.421 50.000 0.00 0.00 42.67 4.40
4387 4694 4.955497 TCCATATTGGAGCACTGAGCACA 61.955 47.826 0.00 0.00 42.67 4.57
4388 4695 6.212789 TCCATATTGGAGCACTGAGCACAT 62.213 45.833 0.00 0.00 42.67 3.21
4389 4696 7.936799 TCCATATTGGAGCACTGAGCACATC 62.937 48.000 0.00 0.00 42.67 3.06
4394 4701 3.359194 GCACTGAGCACATCGATCT 57.641 52.632 0.00 0.00 44.79 2.75
4395 4702 1.207390 GCACTGAGCACATCGATCTC 58.793 55.000 0.00 0.00 44.79 2.75
4396 4703 1.850377 CACTGAGCACATCGATCTCC 58.150 55.000 9.42 0.00 0.00 3.71
4397 4704 0.383590 ACTGAGCACATCGATCTCCG 59.616 55.000 9.42 6.37 40.25 4.63
4398 4705 0.383590 CTGAGCACATCGATCTCCGT 59.616 55.000 9.42 0.00 39.75 4.69
4399 4706 0.817654 TGAGCACATCGATCTCCGTT 59.182 50.000 9.42 0.00 39.75 4.44
4400 4707 1.203928 GAGCACATCGATCTCCGTTG 58.796 55.000 0.00 0.00 42.11 4.10
4401 4708 0.807667 AGCACATCGATCTCCGTTGC 60.808 55.000 0.00 0.00 40.58 4.17
4402 4709 1.766143 GCACATCGATCTCCGTTGCC 61.766 60.000 0.00 0.00 40.58 4.52
4403 4710 1.226974 ACATCGATCTCCGTTGCCG 60.227 57.895 0.00 0.00 40.58 5.69
4404 4711 2.279517 ATCGATCTCCGTTGCCGC 60.280 61.111 0.00 0.00 39.75 6.53
4405 4712 2.786495 ATCGATCTCCGTTGCCGCT 61.786 57.895 0.00 0.00 39.75 5.52
4406 4713 2.685387 ATCGATCTCCGTTGCCGCTC 62.685 60.000 0.00 0.00 39.75 5.03
4407 4714 2.586357 GATCTCCGTTGCCGCTCC 60.586 66.667 0.00 0.00 0.00 4.70
4408 4715 4.514577 ATCTCCGTTGCCGCTCCG 62.515 66.667 0.00 0.00 0.00 4.63
4413 4720 4.025401 CGTTGCCGCTCCGCTTTT 62.025 61.111 0.00 0.00 0.00 2.27
4414 4721 2.429069 GTTGCCGCTCCGCTTTTG 60.429 61.111 0.00 0.00 0.00 2.44
4415 4722 2.904866 TTGCCGCTCCGCTTTTGT 60.905 55.556 0.00 0.00 0.00 2.83
4416 4723 2.485795 TTGCCGCTCCGCTTTTGTT 61.486 52.632 0.00 0.00 0.00 2.83
4417 4724 2.126850 GCCGCTCCGCTTTTGTTC 60.127 61.111 0.00 0.00 0.00 3.18
4418 4725 2.173382 CCGCTCCGCTTTTGTTCG 59.827 61.111 0.00 0.00 0.00 3.95
4419 4726 2.499732 CGCTCCGCTTTTGTTCGC 60.500 61.111 0.00 0.00 0.00 4.70
4428 4735 3.870810 GCTTTTGTTCGCGATCATTTC 57.129 42.857 19.70 7.00 0.00 2.17
4429 4736 3.233578 GCTTTTGTTCGCGATCATTTCA 58.766 40.909 19.70 3.07 0.00 2.69
4430 4737 3.668191 GCTTTTGTTCGCGATCATTTCAA 59.332 39.130 19.70 8.99 0.00 2.69
4431 4738 4.201428 GCTTTTGTTCGCGATCATTTCAAG 60.201 41.667 19.70 17.83 0.00 3.02
4432 4739 2.525750 TGTTCGCGATCATTTCAAGC 57.474 45.000 15.58 0.00 0.00 4.01
4433 4740 2.076100 TGTTCGCGATCATTTCAAGCT 58.924 42.857 15.58 0.00 0.00 3.74
4434 4741 2.159667 TGTTCGCGATCATTTCAAGCTG 60.160 45.455 15.58 0.00 0.00 4.24
4435 4742 2.008752 TCGCGATCATTTCAAGCTGA 57.991 45.000 3.71 0.00 0.00 4.26
4436 4743 2.345876 TCGCGATCATTTCAAGCTGAA 58.654 42.857 3.71 0.00 34.03 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249031 GCACCTTTGGCTTGTGTGTC 60.249 55.000 0.00 0.00 32.62 3.67
1 2 0.969917 TGCACCTTTGGCTTGTGTGT 60.970 50.000 0.00 0.00 32.62 3.72
2 3 0.175302 TTGCACCTTTGGCTTGTGTG 59.825 50.000 0.00 0.00 32.62 3.82
3 4 0.901124 TTTGCACCTTTGGCTTGTGT 59.099 45.000 0.00 0.00 32.62 3.72
4 5 2.243602 ATTTGCACCTTTGGCTTGTG 57.756 45.000 0.00 0.00 0.00 3.33
5 6 2.944349 CAAATTTGCACCTTTGGCTTGT 59.056 40.909 5.01 0.00 0.00 3.16
6 7 2.944349 ACAAATTTGCACCTTTGGCTTG 59.056 40.909 18.12 4.70 36.81 4.01
7 8 3.280197 ACAAATTTGCACCTTTGGCTT 57.720 38.095 18.12 2.09 36.81 4.35
8 9 2.944349 CAACAAATTTGCACCTTTGGCT 59.056 40.909 18.12 7.68 36.81 4.75
9 10 2.541383 GCAACAAATTTGCACCTTTGGC 60.541 45.455 18.12 12.43 44.34 4.52
10 11 3.337301 GCAACAAATTTGCACCTTTGG 57.663 42.857 18.12 7.96 44.34 3.28
18 19 0.879839 ACCCGCAGCAACAAATTTGC 60.880 50.000 18.12 5.24 45.22 3.68
19 20 0.860533 CACCCGCAGCAACAAATTTG 59.139 50.000 16.67 16.67 0.00 2.32
20 21 0.249826 CCACCCGCAGCAACAAATTT 60.250 50.000 0.00 0.00 0.00 1.82
21 22 1.367102 CCACCCGCAGCAACAAATT 59.633 52.632 0.00 0.00 0.00 1.82
22 23 3.050339 CCACCCGCAGCAACAAAT 58.950 55.556 0.00 0.00 0.00 2.32
23 24 3.910490 GCCACCCGCAGCAACAAA 61.910 61.111 0.00 0.00 37.47 2.83
24 25 4.892965 AGCCACCCGCAGCAACAA 62.893 61.111 0.00 0.00 41.38 2.83
42 43 5.295950 TCTCTTTCTGCTATATGCTTCAGC 58.704 41.667 0.00 0.00 43.37 4.26
43 44 6.747125 TCTCTCTTTCTGCTATATGCTTCAG 58.253 40.000 0.00 0.00 43.37 3.02
44 45 6.721704 TCTCTCTTTCTGCTATATGCTTCA 57.278 37.500 0.00 0.00 43.37 3.02
45 46 7.118101 CCAATCTCTCTTTCTGCTATATGCTTC 59.882 40.741 0.00 0.00 43.37 3.86
46 47 6.935771 CCAATCTCTCTTTCTGCTATATGCTT 59.064 38.462 0.00 0.00 43.37 3.91
47 48 6.465948 CCAATCTCTCTTTCTGCTATATGCT 58.534 40.000 0.00 0.00 43.37 3.79
48 49 5.642919 CCCAATCTCTCTTTCTGCTATATGC 59.357 44.000 0.00 0.00 43.25 3.14
49 50 5.642919 GCCCAATCTCTCTTTCTGCTATATG 59.357 44.000 0.00 0.00 0.00 1.78
50 51 5.568423 CGCCCAATCTCTCTTTCTGCTATAT 60.568 44.000 0.00 0.00 0.00 0.86
51 52 4.262207 CGCCCAATCTCTCTTTCTGCTATA 60.262 45.833 0.00 0.00 0.00 1.31
52 53 3.494048 CGCCCAATCTCTCTTTCTGCTAT 60.494 47.826 0.00 0.00 0.00 2.97
53 54 2.159043 CGCCCAATCTCTCTTTCTGCTA 60.159 50.000 0.00 0.00 0.00 3.49
54 55 1.406614 CGCCCAATCTCTCTTTCTGCT 60.407 52.381 0.00 0.00 0.00 4.24
55 56 1.012841 CGCCCAATCTCTCTTTCTGC 58.987 55.000 0.00 0.00 0.00 4.26
56 57 2.393271 ACGCCCAATCTCTCTTTCTG 57.607 50.000 0.00 0.00 0.00 3.02
57 58 2.303022 TCAACGCCCAATCTCTCTTTCT 59.697 45.455 0.00 0.00 0.00 2.52
58 59 2.699954 TCAACGCCCAATCTCTCTTTC 58.300 47.619 0.00 0.00 0.00 2.62
59 60 2.859165 TCAACGCCCAATCTCTCTTT 57.141 45.000 0.00 0.00 0.00 2.52
60 61 2.636830 CATCAACGCCCAATCTCTCTT 58.363 47.619 0.00 0.00 0.00 2.85
61 62 1.134280 CCATCAACGCCCAATCTCTCT 60.134 52.381 0.00 0.00 0.00 3.10
62 63 1.303309 CCATCAACGCCCAATCTCTC 58.697 55.000 0.00 0.00 0.00 3.20
63 64 0.620556 ACCATCAACGCCCAATCTCT 59.379 50.000 0.00 0.00 0.00 3.10
64 65 0.734889 CACCATCAACGCCCAATCTC 59.265 55.000 0.00 0.00 0.00 2.75
65 66 1.315257 GCACCATCAACGCCCAATCT 61.315 55.000 0.00 0.00 0.00 2.40
66 67 1.139520 GCACCATCAACGCCCAATC 59.860 57.895 0.00 0.00 0.00 2.67
67 68 2.699768 CGCACCATCAACGCCCAAT 61.700 57.895 0.00 0.00 0.00 3.16
68 69 3.361158 CGCACCATCAACGCCCAA 61.361 61.111 0.00 0.00 0.00 4.12
73 74 0.316442 GATCATGCGCACCATCAACG 60.316 55.000 14.90 0.00 29.71 4.10
74 75 0.316442 CGATCATGCGCACCATCAAC 60.316 55.000 23.40 8.73 29.71 3.18
75 76 2.016171 CGATCATGCGCACCATCAA 58.984 52.632 23.40 4.83 29.71 2.57
76 77 3.721851 CGATCATGCGCACCATCA 58.278 55.556 23.40 4.94 29.71 3.07
84 85 2.127496 GCAATCGGCGATCATGCG 60.127 61.111 25.21 12.90 35.06 4.73
93 94 1.099879 ATCCAAGAGCAGCAATCGGC 61.100 55.000 0.00 0.00 45.30 5.54
94 95 0.661552 CATCCAAGAGCAGCAATCGG 59.338 55.000 0.00 0.00 0.00 4.18
95 96 1.329906 GACATCCAAGAGCAGCAATCG 59.670 52.381 0.00 0.00 0.00 3.34
96 97 1.329906 CGACATCCAAGAGCAGCAATC 59.670 52.381 0.00 0.00 0.00 2.67
97 98 1.376543 CGACATCCAAGAGCAGCAAT 58.623 50.000 0.00 0.00 0.00 3.56
98 99 1.300971 GCGACATCCAAGAGCAGCAA 61.301 55.000 0.00 0.00 0.00 3.91
99 100 1.742880 GCGACATCCAAGAGCAGCA 60.743 57.895 0.00 0.00 0.00 4.41
100 101 0.179100 TAGCGACATCCAAGAGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
101 102 2.299993 TTAGCGACATCCAAGAGCAG 57.700 50.000 0.00 0.00 0.00 4.24
102 103 2.760634 TTTAGCGACATCCAAGAGCA 57.239 45.000 0.00 0.00 0.00 4.26
103 104 3.623060 TCATTTTAGCGACATCCAAGAGC 59.377 43.478 0.00 0.00 0.00 4.09
104 105 5.998454 ATCATTTTAGCGACATCCAAGAG 57.002 39.130 0.00 0.00 0.00 2.85
105 106 8.450578 AATAATCATTTTAGCGACATCCAAGA 57.549 30.769 0.00 0.00 0.00 3.02
111 112 9.398170 GCACAATAATAATCATTTTAGCGACAT 57.602 29.630 0.00 0.00 0.00 3.06
112 113 8.620416 AGCACAATAATAATCATTTTAGCGACA 58.380 29.630 0.00 0.00 0.00 4.35
129 130 9.969001 AACCCTAAAAATCTACTAGCACAATAA 57.031 29.630 0.00 0.00 0.00 1.40
130 131 9.391006 CAACCCTAAAAATCTACTAGCACAATA 57.609 33.333 0.00 0.00 0.00 1.90
131 132 7.888546 ACAACCCTAAAAATCTACTAGCACAAT 59.111 33.333 0.00 0.00 0.00 2.71
132 133 7.228590 ACAACCCTAAAAATCTACTAGCACAA 58.771 34.615 0.00 0.00 0.00 3.33
133 134 6.775708 ACAACCCTAAAAATCTACTAGCACA 58.224 36.000 0.00 0.00 0.00 4.57
134 135 8.039538 ACTACAACCCTAAAAATCTACTAGCAC 58.960 37.037 0.00 0.00 0.00 4.40
135 136 8.142485 ACTACAACCCTAAAAATCTACTAGCA 57.858 34.615 0.00 0.00 0.00 3.49
147 148 9.701098 CGCATATAAGAATACTACAACCCTAAA 57.299 33.333 0.00 0.00 0.00 1.85
148 149 9.081204 TCGCATATAAGAATACTACAACCCTAA 57.919 33.333 0.00 0.00 0.00 2.69
149 150 8.640063 TCGCATATAAGAATACTACAACCCTA 57.360 34.615 0.00 0.00 0.00 3.53
150 151 7.534723 TCGCATATAAGAATACTACAACCCT 57.465 36.000 0.00 0.00 0.00 4.34
151 152 8.597662 TTTCGCATATAAGAATACTACAACCC 57.402 34.615 0.00 0.00 0.00 4.11
155 156 8.717821 GGCAATTTCGCATATAAGAATACTACA 58.282 33.333 0.00 0.00 0.00 2.74
156 157 8.175716 GGGCAATTTCGCATATAAGAATACTAC 58.824 37.037 0.00 0.00 0.00 2.73
157 158 8.100791 AGGGCAATTTCGCATATAAGAATACTA 58.899 33.333 0.00 0.00 0.00 1.82
158 159 6.942576 AGGGCAATTTCGCATATAAGAATACT 59.057 34.615 0.00 0.00 0.00 2.12
159 160 7.145932 AGGGCAATTTCGCATATAAGAATAC 57.854 36.000 0.00 0.00 0.00 1.89
160 161 7.665559 AGAAGGGCAATTTCGCATATAAGAATA 59.334 33.333 0.00 0.00 0.00 1.75
161 162 6.491403 AGAAGGGCAATTTCGCATATAAGAAT 59.509 34.615 0.00 0.00 0.00 2.40
162 163 5.827797 AGAAGGGCAATTTCGCATATAAGAA 59.172 36.000 0.00 0.00 0.00 2.52
163 164 5.376625 AGAAGGGCAATTTCGCATATAAGA 58.623 37.500 0.00 0.00 0.00 2.10
164 165 5.239306 TGAGAAGGGCAATTTCGCATATAAG 59.761 40.000 0.00 0.00 30.97 1.73
165 166 5.129634 TGAGAAGGGCAATTTCGCATATAA 58.870 37.500 0.00 0.00 30.97 0.98
166 167 4.713553 TGAGAAGGGCAATTTCGCATATA 58.286 39.130 0.00 0.00 30.97 0.86
167 168 3.554934 TGAGAAGGGCAATTTCGCATAT 58.445 40.909 0.00 0.00 30.97 1.78
168 169 2.997980 TGAGAAGGGCAATTTCGCATA 58.002 42.857 0.00 0.00 30.97 3.14
169 170 1.838112 TGAGAAGGGCAATTTCGCAT 58.162 45.000 0.00 0.00 30.97 4.73
170 171 1.745087 GATGAGAAGGGCAATTTCGCA 59.255 47.619 5.01 5.01 38.42 5.10
171 172 2.019984 AGATGAGAAGGGCAATTTCGC 58.980 47.619 0.00 0.00 0.00 4.70
172 173 2.286294 CGAGATGAGAAGGGCAATTTCG 59.714 50.000 0.00 0.00 0.00 3.46
173 174 3.535561 TCGAGATGAGAAGGGCAATTTC 58.464 45.455 0.00 0.00 0.00 2.17
174 175 3.634397 TCGAGATGAGAAGGGCAATTT 57.366 42.857 0.00 0.00 0.00 1.82
185 186 4.555313 GAGATCTTGTGAGCTCGAGATGAG 60.555 50.000 23.60 5.16 44.30 2.90
186 187 3.286353 AGATCTTGTGAGCTCGAGATGA 58.714 45.455 23.60 0.00 38.31 2.92
187 188 3.631144 GAGATCTTGTGAGCTCGAGATG 58.369 50.000 23.60 8.83 44.30 2.90
188 189 3.988379 GAGATCTTGTGAGCTCGAGAT 57.012 47.619 18.75 20.50 44.30 2.75
194 195 2.382882 TCATCCGAGATCTTGTGAGCT 58.617 47.619 9.19 0.00 42.22 4.09
195 196 2.863137 GTTCATCCGAGATCTTGTGAGC 59.137 50.000 9.19 5.61 0.00 4.26
196 197 4.111198 CTGTTCATCCGAGATCTTGTGAG 58.889 47.826 9.19 0.00 0.00 3.51
197 198 3.511540 ACTGTTCATCCGAGATCTTGTGA 59.488 43.478 9.19 4.38 0.00 3.58
198 199 3.854666 ACTGTTCATCCGAGATCTTGTG 58.145 45.455 9.19 2.01 0.00 3.33
199 200 5.661056 TTACTGTTCATCCGAGATCTTGT 57.339 39.130 9.19 0.00 0.00 3.16
200 201 6.968131 TTTTACTGTTCATCCGAGATCTTG 57.032 37.500 2.59 2.59 0.00 3.02
201 202 9.667107 TTTATTTTACTGTTCATCCGAGATCTT 57.333 29.630 0.00 0.00 0.00 2.40
202 203 9.667107 TTTTATTTTACTGTTCATCCGAGATCT 57.333 29.630 0.00 0.00 0.00 2.75
243 244 9.875675 GCAAGCATTTTAAATATTTGTCACAAA 57.124 25.926 5.18 5.18 0.00 2.83
244 245 9.049523 TGCAAGCATTTTAAATATTTGTCACAA 57.950 25.926 11.05 0.00 0.00 3.33
245 246 8.599055 TGCAAGCATTTTAAATATTTGTCACA 57.401 26.923 11.05 0.00 0.00 3.58
246 247 9.875675 TTTGCAAGCATTTTAAATATTTGTCAC 57.124 25.926 11.05 0.00 0.00 3.67
258 259 8.719648 CCATGATAAAACTTTGCAAGCATTTTA 58.280 29.630 18.80 18.80 0.00 1.52
259 260 7.444792 TCCATGATAAAACTTTGCAAGCATTTT 59.555 29.630 16.64 16.64 0.00 1.82
260 261 6.935771 TCCATGATAAAACTTTGCAAGCATTT 59.064 30.769 0.00 5.08 0.00 2.32
261 262 6.465948 TCCATGATAAAACTTTGCAAGCATT 58.534 32.000 0.00 0.00 0.00 3.56
262 263 6.040209 TCCATGATAAAACTTTGCAAGCAT 57.960 33.333 0.00 0.00 0.00 3.79
263 264 5.465532 TCCATGATAAAACTTTGCAAGCA 57.534 34.783 0.00 0.00 0.00 3.91
264 265 6.591062 TCATTCCATGATAAAACTTTGCAAGC 59.409 34.615 0.00 0.00 33.59 4.01
265 266 7.599621 TGTCATTCCATGATAAAACTTTGCAAG 59.400 33.333 0.00 0.00 42.04 4.01
266 267 7.440198 TGTCATTCCATGATAAAACTTTGCAA 58.560 30.769 0.00 0.00 42.04 4.08
267 268 6.990798 TGTCATTCCATGATAAAACTTTGCA 58.009 32.000 0.00 0.00 42.04 4.08
268 269 7.887996 TTGTCATTCCATGATAAAACTTTGC 57.112 32.000 0.00 0.00 42.04 3.68
271 272 9.426837 CACAATTGTCATTCCATGATAAAACTT 57.573 29.630 8.48 0.00 42.38 2.66
272 273 8.036575 CCACAATTGTCATTCCATGATAAAACT 58.963 33.333 8.48 0.00 42.38 2.66
273 274 8.034215 TCCACAATTGTCATTCCATGATAAAAC 58.966 33.333 8.48 0.00 42.38 2.43
274 275 8.131847 TCCACAATTGTCATTCCATGATAAAA 57.868 30.769 8.48 0.00 42.38 1.52
275 276 7.715266 TCCACAATTGTCATTCCATGATAAA 57.285 32.000 8.48 0.00 42.38 1.40
276 277 7.396907 ACTTCCACAATTGTCATTCCATGATAA 59.603 33.333 8.48 0.00 43.08 1.75
277 278 6.891361 ACTTCCACAATTGTCATTCCATGATA 59.109 34.615 8.48 0.00 42.04 2.15
278 279 5.718130 ACTTCCACAATTGTCATTCCATGAT 59.282 36.000 8.48 0.00 42.04 2.45
279 280 5.078949 ACTTCCACAATTGTCATTCCATGA 58.921 37.500 8.48 0.00 36.84 3.07
280 281 5.395682 ACTTCCACAATTGTCATTCCATG 57.604 39.130 8.48 0.00 0.00 3.66
281 282 4.156556 CGACTTCCACAATTGTCATTCCAT 59.843 41.667 8.48 0.00 0.00 3.41
282 283 3.501828 CGACTTCCACAATTGTCATTCCA 59.498 43.478 8.48 0.00 0.00 3.53
283 284 3.502211 ACGACTTCCACAATTGTCATTCC 59.498 43.478 8.48 0.00 0.00 3.01
284 285 4.466828 CACGACTTCCACAATTGTCATTC 58.533 43.478 8.48 0.53 0.00 2.67
285 286 3.253188 CCACGACTTCCACAATTGTCATT 59.747 43.478 8.48 0.00 0.00 2.57
286 287 2.813754 CCACGACTTCCACAATTGTCAT 59.186 45.455 8.48 0.00 0.00 3.06
287 288 2.217750 CCACGACTTCCACAATTGTCA 58.782 47.619 8.48 0.00 0.00 3.58
288 289 1.069227 GCCACGACTTCCACAATTGTC 60.069 52.381 8.48 0.00 0.00 3.18
289 290 0.951558 GCCACGACTTCCACAATTGT 59.048 50.000 4.92 4.92 0.00 2.71
290 291 0.950836 TGCCACGACTTCCACAATTG 59.049 50.000 3.24 3.24 0.00 2.32
291 292 1.686355 TTGCCACGACTTCCACAATT 58.314 45.000 0.00 0.00 0.00 2.32
292 293 1.686355 TTTGCCACGACTTCCACAAT 58.314 45.000 0.00 0.00 0.00 2.71
293 294 1.464734 TTTTGCCACGACTTCCACAA 58.535 45.000 0.00 0.00 0.00 3.33
294 295 1.464734 TTTTTGCCACGACTTCCACA 58.535 45.000 0.00 0.00 0.00 4.17
310 311 7.955918 AGTATTTTGGAGTGCTGATTCTTTTT 58.044 30.769 0.00 0.00 0.00 1.94
311 312 7.530426 AGTATTTTGGAGTGCTGATTCTTTT 57.470 32.000 0.00 0.00 0.00 2.27
312 313 7.530426 AAGTATTTTGGAGTGCTGATTCTTT 57.470 32.000 0.00 0.00 0.00 2.52
313 314 7.530426 AAAGTATTTTGGAGTGCTGATTCTT 57.470 32.000 0.00 0.00 31.62 2.52
333 334 9.171877 TGCTCCAAAAATGTTATTTTCAAAAGT 57.828 25.926 0.53 0.00 30.31 2.66
336 337 9.334947 TGATGCTCCAAAAATGTTATTTTCAAA 57.665 25.926 0.53 0.00 30.31 2.69
337 338 8.899427 TGATGCTCCAAAAATGTTATTTTCAA 57.101 26.923 0.53 0.00 30.31 2.69
338 339 8.899427 TTGATGCTCCAAAAATGTTATTTTCA 57.101 26.923 0.53 0.00 30.31 2.69
339 340 8.992073 ACTTGATGCTCCAAAAATGTTATTTTC 58.008 29.630 0.53 0.00 30.31 2.29
340 341 8.907222 ACTTGATGCTCCAAAAATGTTATTTT 57.093 26.923 0.00 0.00 32.89 1.82
341 342 8.907222 AACTTGATGCTCCAAAAATGTTATTT 57.093 26.923 0.00 0.00 0.00 1.40
342 343 8.907222 AAACTTGATGCTCCAAAAATGTTATT 57.093 26.923 0.00 0.00 0.00 1.40
343 344 8.907222 AAAACTTGATGCTCCAAAAATGTTAT 57.093 26.923 0.00 0.00 0.00 1.89
344 345 8.729805 AAAAACTTGATGCTCCAAAAATGTTA 57.270 26.923 0.00 0.00 0.00 2.41
345 346 7.628769 AAAAACTTGATGCTCCAAAAATGTT 57.371 28.000 0.00 0.00 0.00 2.71
371 372 6.765512 TGGAATAATATTCGTGCAAGACATGA 59.234 34.615 0.40 0.00 42.69 3.07
372 373 6.958255 TGGAATAATATTCGTGCAAGACATG 58.042 36.000 0.40 0.00 36.55 3.21
373 374 7.445096 TCATGGAATAATATTCGTGCAAGACAT 59.555 33.333 0.40 2.54 0.00 3.06
374 375 6.765512 TCATGGAATAATATTCGTGCAAGACA 59.234 34.615 0.40 0.00 0.00 3.41
375 376 7.189693 TCATGGAATAATATTCGTGCAAGAC 57.810 36.000 0.40 0.00 0.00 3.01
376 377 7.661027 TCATCATGGAATAATATTCGTGCAAGA 59.339 33.333 0.00 0.00 0.00 3.02
377 378 7.809665 TCATCATGGAATAATATTCGTGCAAG 58.190 34.615 6.89 0.00 0.00 4.01
378 379 7.742556 TCATCATGGAATAATATTCGTGCAA 57.257 32.000 6.89 0.00 0.00 4.08
379 380 7.742556 TTCATCATGGAATAATATTCGTGCA 57.257 32.000 6.89 0.80 0.00 4.57
380 381 9.069078 CATTTCATCATGGAATAATATTCGTGC 57.931 33.333 6.89 0.00 0.00 5.34
388 389 8.885722 GTTTGCAACATTTCATCATGGAATAAT 58.114 29.630 0.00 0.00 0.00 1.28
389 390 7.876582 TGTTTGCAACATTTCATCATGGAATAA 59.123 29.630 0.00 0.00 36.25 1.40
390 391 7.384477 TGTTTGCAACATTTCATCATGGAATA 58.616 30.769 0.00 0.00 36.25 1.75
391 392 6.231951 TGTTTGCAACATTTCATCATGGAAT 58.768 32.000 0.00 0.00 36.25 3.01
392 393 5.608449 TGTTTGCAACATTTCATCATGGAA 58.392 33.333 0.00 0.00 36.25 3.53
393 394 5.211174 TGTTTGCAACATTTCATCATGGA 57.789 34.783 0.00 0.00 36.25 3.41
394 395 5.926214 TTGTTTGCAACATTTCATCATGG 57.074 34.783 0.00 0.00 41.79 3.66
395 396 7.123160 TGATTGTTTGCAACATTTCATCATG 57.877 32.000 0.00 0.00 41.79 3.07
396 397 7.731882 TTGATTGTTTGCAACATTTCATCAT 57.268 28.000 0.00 0.00 41.79 2.45
397 398 7.549615 TTTGATTGTTTGCAACATTTCATCA 57.450 28.000 0.00 4.62 41.79 3.07
398 399 8.838452 TTTTTGATTGTTTGCAACATTTCATC 57.162 26.923 0.00 2.17 41.79 2.92
399 400 9.804758 AATTTTTGATTGTTTGCAACATTTCAT 57.195 22.222 0.00 0.00 41.79 2.57
400 401 9.635520 AAATTTTTGATTGTTTGCAACATTTCA 57.364 22.222 0.00 5.12 41.79 2.69
462 463 6.864342 TCGGGTGAACAGTAAAATTCAAAAA 58.136 32.000 0.00 0.00 36.62 1.94
463 464 6.319152 TCTCGGGTGAACAGTAAAATTCAAAA 59.681 34.615 0.00 0.00 36.62 2.44
464 465 5.823570 TCTCGGGTGAACAGTAAAATTCAAA 59.176 36.000 0.00 0.00 36.62 2.69
465 466 5.369833 TCTCGGGTGAACAGTAAAATTCAA 58.630 37.500 0.00 0.00 36.62 2.69
466 467 4.963373 TCTCGGGTGAACAGTAAAATTCA 58.037 39.130 0.00 0.00 32.44 2.57
467 468 5.642063 TGATCTCGGGTGAACAGTAAAATTC 59.358 40.000 0.00 0.00 0.00 2.17
468 469 5.411669 GTGATCTCGGGTGAACAGTAAAATT 59.588 40.000 0.00 0.00 0.00 1.82
469 470 4.935808 GTGATCTCGGGTGAACAGTAAAAT 59.064 41.667 0.00 0.00 0.00 1.82
470 471 4.202274 TGTGATCTCGGGTGAACAGTAAAA 60.202 41.667 0.00 0.00 0.00 1.52
471 472 3.322541 TGTGATCTCGGGTGAACAGTAAA 59.677 43.478 0.00 0.00 0.00 2.01
472 473 2.894765 TGTGATCTCGGGTGAACAGTAA 59.105 45.455 0.00 0.00 0.00 2.24
473 474 2.521126 TGTGATCTCGGGTGAACAGTA 58.479 47.619 0.00 0.00 0.00 2.74
474 475 1.338107 TGTGATCTCGGGTGAACAGT 58.662 50.000 0.00 0.00 0.00 3.55
475 476 2.094026 TCATGTGATCTCGGGTGAACAG 60.094 50.000 0.00 0.00 0.00 3.16
476 477 1.899142 TCATGTGATCTCGGGTGAACA 59.101 47.619 0.00 0.00 0.00 3.18
477 478 2.672961 TCATGTGATCTCGGGTGAAC 57.327 50.000 0.00 0.00 0.00 3.18
478 479 2.567169 AGTTCATGTGATCTCGGGTGAA 59.433 45.455 0.00 0.65 0.00 3.18
479 480 2.166459 GAGTTCATGTGATCTCGGGTGA 59.834 50.000 5.59 0.00 33.02 4.02
480 481 2.544685 GAGTTCATGTGATCTCGGGTG 58.455 52.381 5.59 0.00 33.02 4.61
481 482 2.969628 GAGTTCATGTGATCTCGGGT 57.030 50.000 5.59 0.00 33.02 5.28
485 486 3.181492 TGAGCTCGAGTTCATGTGATCTC 60.181 47.826 25.80 13.73 37.47 2.75
486 487 2.757314 TGAGCTCGAGTTCATGTGATCT 59.243 45.455 25.80 4.77 30.24 2.75
487 488 3.114809 CTGAGCTCGAGTTCATGTGATC 58.885 50.000 28.84 3.95 34.81 2.92
488 489 2.757314 TCTGAGCTCGAGTTCATGTGAT 59.243 45.455 28.84 0.00 34.81 3.06
489 490 2.162681 TCTGAGCTCGAGTTCATGTGA 58.837 47.619 28.84 20.56 34.81 3.58
490 491 2.643933 TCTGAGCTCGAGTTCATGTG 57.356 50.000 28.84 18.79 34.81 3.21
491 492 4.991153 TTATCTGAGCTCGAGTTCATGT 57.009 40.909 28.84 21.93 34.81 3.21
492 493 4.505922 GGTTTATCTGAGCTCGAGTTCATG 59.494 45.833 28.84 21.94 34.81 3.07
493 494 4.688021 GGTTTATCTGAGCTCGAGTTCAT 58.312 43.478 28.84 19.00 34.81 2.57
494 495 3.427638 CGGTTTATCTGAGCTCGAGTTCA 60.428 47.826 27.28 27.28 34.17 3.18
495 496 3.109619 CGGTTTATCTGAGCTCGAGTTC 58.890 50.000 21.09 21.09 0.00 3.01
496 497 2.492484 ACGGTTTATCTGAGCTCGAGTT 59.508 45.455 15.13 8.18 0.00 3.01
497 498 2.093106 ACGGTTTATCTGAGCTCGAGT 58.907 47.619 15.13 0.23 0.00 4.18
498 499 2.159366 ACACGGTTTATCTGAGCTCGAG 60.159 50.000 8.45 8.45 0.00 4.04
499 500 1.816835 ACACGGTTTATCTGAGCTCGA 59.183 47.619 9.64 9.86 0.00 4.04
500 501 2.186076 GACACGGTTTATCTGAGCTCG 58.814 52.381 9.64 4.19 0.00 5.03
501 502 2.166664 AGGACACGGTTTATCTGAGCTC 59.833 50.000 6.82 6.82 0.00 4.09
502 503 2.166664 GAGGACACGGTTTATCTGAGCT 59.833 50.000 0.00 0.00 0.00 4.09
503 504 2.166664 AGAGGACACGGTTTATCTGAGC 59.833 50.000 0.00 0.00 0.00 4.26
517 518 6.013725 ACAACATAATGAGGTGTAAGAGGACA 60.014 38.462 0.00 0.00 0.00 4.02
524 525 6.515862 GCAACCAACAACATAATGAGGTGTAA 60.516 38.462 0.00 0.00 34.30 2.41
529 530 4.517952 TGCAACCAACAACATAATGAGG 57.482 40.909 0.00 0.00 0.00 3.86
530 531 8.706492 ATTATTGCAACCAACAACATAATGAG 57.294 30.769 0.00 0.00 32.95 2.90
565 566 7.063593 ACATCTCCAACAAGCTAGATAGACTA 58.936 38.462 0.00 0.00 0.00 2.59
598 600 1.317613 CCCAAGCAACACTTAGTGCA 58.682 50.000 12.80 0.00 36.04 4.57
616 618 2.621526 CAAACAACACCTAAGGGACACC 59.378 50.000 0.00 0.00 36.25 4.16
617 619 3.284617 ACAAACAACACCTAAGGGACAC 58.715 45.455 0.00 0.00 36.25 3.67
618 620 3.655615 ACAAACAACACCTAAGGGACA 57.344 42.857 0.00 0.00 36.25 4.02
619 621 4.994907 AAACAAACAACACCTAAGGGAC 57.005 40.909 0.00 0.00 36.25 4.46
620 622 7.663043 AAATAAACAAACAACACCTAAGGGA 57.337 32.000 0.00 0.00 36.25 4.20
621 623 7.254624 GCAAAATAAACAAACAACACCTAAGGG 60.255 37.037 0.00 0.00 38.88 3.95
622 624 7.494298 AGCAAAATAAACAAACAACACCTAAGG 59.506 33.333 0.00 0.00 0.00 2.69
623 625 8.327429 CAGCAAAATAAACAAACAACACCTAAG 58.673 33.333 0.00 0.00 0.00 2.18
624 626 8.035394 TCAGCAAAATAAACAAACAACACCTAA 58.965 29.630 0.00 0.00 0.00 2.69
625 627 7.548097 TCAGCAAAATAAACAAACAACACCTA 58.452 30.769 0.00 0.00 0.00 3.08
626 628 6.402222 TCAGCAAAATAAACAAACAACACCT 58.598 32.000 0.00 0.00 0.00 4.00
646 648 3.190874 CTCCGATAACAAGAGGTTCAGC 58.809 50.000 0.00 0.00 40.96 4.26
674 676 7.687941 AATGAAACTTATAACACAGTCCTGG 57.312 36.000 0.00 0.00 34.19 4.45
699 701 9.760077 GAGCTTCCAATTTCATTTCATATTCAT 57.240 29.630 0.00 0.00 0.00 2.57
746 748 2.925724 CTGCCCAAATCCGTATGGTTA 58.074 47.619 0.00 0.00 34.79 2.85
749 751 0.751277 TGCTGCCCAAATCCGTATGG 60.751 55.000 0.00 0.00 36.42 2.74
750 752 1.066002 CTTGCTGCCCAAATCCGTATG 59.934 52.381 0.00 0.00 31.94 2.39
751 753 1.340991 ACTTGCTGCCCAAATCCGTAT 60.341 47.619 0.00 0.00 31.94 3.06
752 754 0.037590 ACTTGCTGCCCAAATCCGTA 59.962 50.000 0.00 0.00 31.94 4.02
753 755 1.228552 ACTTGCTGCCCAAATCCGT 60.229 52.632 0.00 0.00 31.94 4.69
754 756 1.508088 GACTTGCTGCCCAAATCCG 59.492 57.895 0.00 0.00 31.94 4.18
805 809 1.194121 GGGTGGCTGGCTGGATTTTT 61.194 55.000 2.00 0.00 0.00 1.94
809 813 3.736224 CTGGGTGGCTGGCTGGAT 61.736 66.667 2.00 0.00 0.00 3.41
1304 1351 0.038343 CAAAGGCCACACAATTCCGG 60.038 55.000 5.01 0.00 0.00 5.14
1381 1428 0.834687 TACAGTCGCCTTCAACCCCT 60.835 55.000 0.00 0.00 0.00 4.79
1385 1432 2.092211 CGATTGTACAGTCGCCTTCAAC 59.908 50.000 24.86 0.00 34.00 3.18
1420 1467 1.553248 CCCCGGAATCAACAGTAGTCA 59.447 52.381 0.73 0.00 0.00 3.41
1425 1472 0.840722 ACCTCCCCGGAATCAACAGT 60.841 55.000 0.73 0.00 36.31 3.55
1507 1555 3.509137 TTCGACTGCACACGGGTCC 62.509 63.158 0.00 0.00 0.00 4.46
1540 1588 3.382546 CCGAATTTCCATCTGAAGCCAAT 59.617 43.478 0.00 0.00 33.63 3.16
1570 1620 4.761739 CACCAGTTACACCAGAATCAACAT 59.238 41.667 0.00 0.00 0.00 2.71
1608 1658 1.097547 ACGCCTAGGATGCACAATGC 61.098 55.000 14.75 0.00 45.29 3.56
1641 1691 4.143115 ACGCGTAGATCAATTCAACAACAG 60.143 41.667 11.67 0.00 0.00 3.16
1739 1789 4.278419 ACCTGATGGTGTTTTTCTTAGTGC 59.722 41.667 0.00 0.00 46.51 4.40
1763 1813 5.648092 ACTGTTTACACTTCAAAAGCTCAGT 59.352 36.000 0.00 0.00 0.00 3.41
1774 1824 4.863491 TCCTCGTACACTGTTTACACTTC 58.137 43.478 5.11 0.00 0.00 3.01
1800 1850 1.473434 GCCAATACCAGAGAACCCGAG 60.473 57.143 0.00 0.00 0.00 4.63
1803 1853 3.136626 ACATAGCCAATACCAGAGAACCC 59.863 47.826 0.00 0.00 0.00 4.11
1936 1986 1.361668 CTCCTGTTGGAACGGATGCG 61.362 60.000 4.58 4.58 42.66 4.73
1942 1992 0.036010 AGCCATCTCCTGTTGGAACG 60.036 55.000 0.00 0.00 42.66 3.95
1958 2008 0.179084 TCGTTCAATCCATCGGAGCC 60.179 55.000 0.00 0.00 34.05 4.70
1986 2036 7.707624 ATTGGCTCAGTAGATTTTGATTCAA 57.292 32.000 0.00 0.00 0.00 2.69
2061 2111 1.460689 ACCCTCACCTGTTCCCGAA 60.461 57.895 0.00 0.00 0.00 4.30
2084 2134 7.667557 AGCTCTACAGATTGTTACTACAAACA 58.332 34.615 0.00 0.00 46.62 2.83
2339 2431 7.624360 TGTGCGTTTATATCTTCTTTGGAAT 57.376 32.000 0.00 0.00 0.00 3.01
2358 2450 3.429085 GCCTAATTGAAGACATTGTGCG 58.571 45.455 0.00 0.00 0.00 5.34
2438 2530 4.646945 TGGAACCTTACATTTGAGCAACAA 59.353 37.500 0.00 0.00 36.65 2.83
2439 2531 4.211125 TGGAACCTTACATTTGAGCAACA 58.789 39.130 0.00 0.00 0.00 3.33
2441 2533 5.860941 TTTGGAACCTTACATTTGAGCAA 57.139 34.783 0.00 0.00 0.00 3.91
2442 2534 5.860941 TTTTGGAACCTTACATTTGAGCA 57.139 34.783 0.00 0.00 0.00 4.26
2487 2579 1.031571 TCCATTTGCGTGATGCCTCC 61.032 55.000 0.00 0.00 45.60 4.30
2495 2587 1.938577 CAGAGAGGATCCATTTGCGTG 59.061 52.381 15.82 0.00 33.66 5.34
2542 2634 6.999272 AGCAGCTTATCTGATGAAATCTTGAT 59.001 34.615 0.00 0.00 45.81 2.57
2543 2635 6.354938 AGCAGCTTATCTGATGAAATCTTGA 58.645 36.000 0.00 0.00 45.81 3.02
2585 2677 8.276252 TCTTGAAGGGTATTTACAGTAAATGC 57.724 34.615 23.62 21.94 38.70 3.56
2688 2780 7.878127 CAGACGGATATGATATAACCCAAGTTT 59.122 37.037 0.00 0.00 37.42 2.66
2724 2816 8.836413 TGATCCAAGGATTTAAATAGTAAAGCG 58.164 33.333 2.62 0.00 34.60 4.68
3174 3266 0.671781 CACCAGCCTTCTCCAGTTCG 60.672 60.000 0.00 0.00 0.00 3.95
3177 3269 0.398318 GAACACCAGCCTTCTCCAGT 59.602 55.000 0.00 0.00 0.00 4.00
3291 3383 0.995024 AAGCAACAGCCCAGTATCCT 59.005 50.000 0.00 0.00 0.00 3.24
3369 3461 1.415289 CCCATCAGCTGCAGTATCTCA 59.585 52.381 16.64 0.00 0.00 3.27
3536 3629 4.389382 CACGAACGAACCATACCATTTACA 59.611 41.667 0.14 0.00 0.00 2.41
3544 3637 1.425412 ACAGCACGAACGAACCATAC 58.575 50.000 0.14 0.00 0.00 2.39
3868 3969 2.192393 CGTAAACGACAGCAGACAGCA 61.192 52.381 0.00 0.00 44.17 4.41
3875 3976 0.104487 TTGGACCGTAAACGACAGCA 59.896 50.000 3.65 0.00 43.02 4.41
3877 3978 2.414138 GGATTTGGACCGTAAACGACAG 59.586 50.000 3.65 0.00 43.02 3.51
3878 3979 2.415776 GGATTTGGACCGTAAACGACA 58.584 47.619 3.65 0.00 43.02 4.35
3879 3980 1.391144 CGGATTTGGACCGTAAACGAC 59.609 52.381 3.65 0.00 44.57 4.34
3880 3981 1.712401 CGGATTTGGACCGTAAACGA 58.288 50.000 3.65 0.00 44.57 3.85
3953 4054 2.291741 CACTGCCTTTTGACCTTCTGTC 59.708 50.000 0.00 0.00 44.72 3.51
3995 4291 7.381766 TGATATCTGTTGAATGTTGGTCTTG 57.618 36.000 3.98 0.00 0.00 3.02
4015 4311 2.635915 ACTTGACCAGACCCGTTTGATA 59.364 45.455 0.00 0.00 0.00 2.15
4037 4333 7.543238 GTGGATCACAACAGTTAGACGTAGTG 61.543 46.154 0.00 0.00 35.73 2.74
4075 4371 1.284657 CACTCGTGAGATGCATGGAC 58.715 55.000 2.46 0.00 40.84 4.02
4129 4425 2.598632 CGATCATTTCGCCGGCTCC 61.599 63.158 26.68 0.00 41.69 4.70
4201 4500 8.877195 AGAAACTCCAAAGTTAGTGGTTCTATA 58.123 33.333 6.46 0.00 45.07 1.31
4211 4510 7.497909 TCCAAAGTGTAGAAACTCCAAAGTTAG 59.502 37.037 0.00 0.00 45.07 2.34
4212 4511 7.340256 TCCAAAGTGTAGAAACTCCAAAGTTA 58.660 34.615 0.00 0.00 45.07 2.24
4225 4532 2.036733 CGGACCAGTTCCAAAGTGTAGA 59.963 50.000 0.00 0.00 46.29 2.59
4237 4544 1.913762 CTGAGGGGACGGACCAGTT 60.914 63.158 0.00 0.00 41.20 3.16
4266 4573 3.865929 AAGCGTGTGACCTGCTCGG 62.866 63.158 0.00 0.00 38.17 4.63
4267 4574 2.356313 AAGCGTGTGACCTGCTCG 60.356 61.111 0.00 0.00 38.17 5.03
4268 4575 2.959357 GCAAGCGTGTGACCTGCTC 61.959 63.158 0.59 0.00 38.17 4.26
4269 4576 2.974698 GCAAGCGTGTGACCTGCT 60.975 61.111 0.59 0.00 41.60 4.24
4270 4577 3.245948 CTGCAAGCGTGTGACCTGC 62.246 63.158 0.59 0.00 0.00 4.85
4271 4578 0.952497 ATCTGCAAGCGTGTGACCTG 60.952 55.000 0.59 0.00 0.00 4.00
4272 4579 0.608130 TATCTGCAAGCGTGTGACCT 59.392 50.000 0.59 0.00 0.00 3.85
4273 4580 1.328680 CATATCTGCAAGCGTGTGACC 59.671 52.381 0.59 0.00 0.00 4.02
4274 4581 1.328680 CCATATCTGCAAGCGTGTGAC 59.671 52.381 0.59 0.00 0.00 3.67
4275 4582 1.206849 TCCATATCTGCAAGCGTGTGA 59.793 47.619 0.59 0.86 0.00 3.58
4276 4583 1.596260 CTCCATATCTGCAAGCGTGTG 59.404 52.381 0.59 0.00 0.00 3.82
4277 4584 1.208052 ACTCCATATCTGCAAGCGTGT 59.792 47.619 0.59 0.00 0.00 4.49
4278 4585 1.945387 ACTCCATATCTGCAAGCGTG 58.055 50.000 0.00 0.00 0.00 5.34
4279 4586 2.546795 GCTACTCCATATCTGCAAGCGT 60.547 50.000 0.00 0.00 0.00 5.07
4280 4587 2.064762 GCTACTCCATATCTGCAAGCG 58.935 52.381 0.00 0.00 0.00 4.68
4281 4588 3.065655 CTGCTACTCCATATCTGCAAGC 58.934 50.000 0.00 0.00 0.00 4.01
4282 4589 4.280425 TCTCTGCTACTCCATATCTGCAAG 59.720 45.833 0.00 0.00 0.00 4.01
4283 4590 4.218312 TCTCTGCTACTCCATATCTGCAA 58.782 43.478 0.00 0.00 0.00 4.08
4284 4591 3.837355 TCTCTGCTACTCCATATCTGCA 58.163 45.455 0.00 0.00 0.00 4.41
4285 4592 4.862902 TTCTCTGCTACTCCATATCTGC 57.137 45.455 0.00 0.00 0.00 4.26
4286 4593 5.638657 GCAATTCTCTGCTACTCCATATCTG 59.361 44.000 0.00 0.00 39.34 2.90
4287 4594 5.306419 TGCAATTCTCTGCTACTCCATATCT 59.694 40.000 0.00 0.00 43.07 1.98
4288 4595 5.407995 GTGCAATTCTCTGCTACTCCATATC 59.592 44.000 0.00 0.00 43.07 1.63
4289 4596 5.303971 GTGCAATTCTCTGCTACTCCATAT 58.696 41.667 0.00 0.00 43.07 1.78
4290 4597 4.443457 GGTGCAATTCTCTGCTACTCCATA 60.443 45.833 0.00 0.00 43.07 2.74
4291 4598 3.539604 GTGCAATTCTCTGCTACTCCAT 58.460 45.455 0.00 0.00 43.07 3.41
4292 4599 2.355108 GGTGCAATTCTCTGCTACTCCA 60.355 50.000 0.00 0.00 43.07 3.86
4293 4600 2.284190 GGTGCAATTCTCTGCTACTCC 58.716 52.381 0.00 0.00 43.07 3.85
4294 4601 2.675348 GTGGTGCAATTCTCTGCTACTC 59.325 50.000 0.00 0.00 43.07 2.59
4295 4602 2.616510 GGTGGTGCAATTCTCTGCTACT 60.617 50.000 0.00 0.00 43.07 2.57
4296 4603 1.740025 GGTGGTGCAATTCTCTGCTAC 59.260 52.381 0.00 0.00 43.07 3.58
4297 4604 1.630369 AGGTGGTGCAATTCTCTGCTA 59.370 47.619 0.00 0.00 43.07 3.49
4298 4605 0.403271 AGGTGGTGCAATTCTCTGCT 59.597 50.000 0.00 0.00 43.07 4.24
4299 4606 0.807496 GAGGTGGTGCAATTCTCTGC 59.193 55.000 0.00 0.00 42.95 4.26
4300 4607 1.271543 TGGAGGTGGTGCAATTCTCTG 60.272 52.381 0.00 0.00 0.00 3.35
4301 4608 1.067295 TGGAGGTGGTGCAATTCTCT 58.933 50.000 0.00 0.00 0.00 3.10
4302 4609 1.168714 GTGGAGGTGGTGCAATTCTC 58.831 55.000 0.00 0.00 0.00 2.87
4303 4610 0.478072 TGTGGAGGTGGTGCAATTCT 59.522 50.000 0.00 0.00 0.00 2.40
4304 4611 0.598065 GTGTGGAGGTGGTGCAATTC 59.402 55.000 0.00 0.00 0.00 2.17
4305 4612 0.106268 TGTGTGGAGGTGGTGCAATT 60.106 50.000 0.00 0.00 0.00 2.32
4306 4613 0.112995 ATGTGTGGAGGTGGTGCAAT 59.887 50.000 0.00 0.00 0.00 3.56
4307 4614 0.106268 AATGTGTGGAGGTGGTGCAA 60.106 50.000 0.00 0.00 0.00 4.08
4308 4615 0.106268 AAATGTGTGGAGGTGGTGCA 60.106 50.000 0.00 0.00 0.00 4.57
4309 4616 0.598065 GAAATGTGTGGAGGTGGTGC 59.402 55.000 0.00 0.00 0.00 5.01
4310 4617 1.979855 TGAAATGTGTGGAGGTGGTG 58.020 50.000 0.00 0.00 0.00 4.17
4311 4618 2.978156 ATGAAATGTGTGGAGGTGGT 57.022 45.000 0.00 0.00 0.00 4.16
4312 4619 3.691118 CACTATGAAATGTGTGGAGGTGG 59.309 47.826 0.00 0.00 31.54 4.61
4313 4620 3.127548 GCACTATGAAATGTGTGGAGGTG 59.872 47.826 0.00 0.00 36.63 4.00
4314 4621 3.244875 TGCACTATGAAATGTGTGGAGGT 60.245 43.478 0.00 0.00 36.63 3.85
4315 4622 3.346315 TGCACTATGAAATGTGTGGAGG 58.654 45.455 0.00 0.00 36.63 4.30
4316 4623 4.397103 ACATGCACTATGAAATGTGTGGAG 59.603 41.667 0.00 0.00 39.21 3.86
4317 4624 4.334552 ACATGCACTATGAAATGTGTGGA 58.665 39.130 0.00 0.00 39.21 4.02
4318 4625 4.439153 GGACATGCACTATGAAATGTGTGG 60.439 45.833 0.00 0.00 39.21 4.17
4319 4626 4.439153 GGGACATGCACTATGAAATGTGTG 60.439 45.833 0.00 0.00 39.21 3.82
4320 4627 3.696051 GGGACATGCACTATGAAATGTGT 59.304 43.478 0.00 0.00 39.21 3.72
4321 4628 3.949754 AGGGACATGCACTATGAAATGTG 59.050 43.478 0.00 0.00 39.21 3.21
4322 4629 3.949754 CAGGGACATGCACTATGAAATGT 59.050 43.478 0.00 0.00 39.21 2.71
4323 4630 3.949754 ACAGGGACATGCACTATGAAATG 59.050 43.478 0.00 0.00 39.21 2.32
4324 4631 4.240881 ACAGGGACATGCACTATGAAAT 57.759 40.909 0.00 0.00 39.21 2.17
4325 4632 3.719268 ACAGGGACATGCACTATGAAA 57.281 42.857 0.00 0.00 39.21 2.69
4326 4633 3.432186 GCTACAGGGACATGCACTATGAA 60.432 47.826 0.00 0.00 39.21 2.57
4327 4634 2.103094 GCTACAGGGACATGCACTATGA 59.897 50.000 0.00 0.00 39.21 2.15
4328 4635 2.487934 GCTACAGGGACATGCACTATG 58.512 52.381 0.00 0.00 42.68 2.23
4329 4636 1.417890 GGCTACAGGGACATGCACTAT 59.582 52.381 0.00 0.00 0.00 2.12
4330 4637 0.830648 GGCTACAGGGACATGCACTA 59.169 55.000 0.00 0.00 0.00 2.74
4331 4638 0.911525 AGGCTACAGGGACATGCACT 60.912 55.000 0.00 0.00 0.00 4.40
4332 4639 0.745845 CAGGCTACAGGGACATGCAC 60.746 60.000 0.00 0.00 0.00 4.57
4333 4640 1.200760 ACAGGCTACAGGGACATGCA 61.201 55.000 0.00 0.00 0.00 3.96
4334 4641 0.830648 TACAGGCTACAGGGACATGC 59.169 55.000 0.00 0.00 0.00 4.06
4335 4642 1.414181 CCTACAGGCTACAGGGACATG 59.586 57.143 5.80 0.00 0.00 3.21
4336 4643 1.794714 CCTACAGGCTACAGGGACAT 58.205 55.000 5.80 0.00 0.00 3.06
4337 4644 3.300032 CCTACAGGCTACAGGGACA 57.700 57.895 5.80 0.00 0.00 4.02
4341 4648 1.739338 CGCTCCCTACAGGCTACAGG 61.739 65.000 6.59 6.59 34.51 4.00
4342 4649 1.038130 ACGCTCCCTACAGGCTACAG 61.038 60.000 0.00 0.00 34.51 2.74
4343 4650 1.000019 ACGCTCCCTACAGGCTACA 60.000 57.895 0.00 0.00 34.51 2.74
4344 4651 1.437986 CACGCTCCCTACAGGCTAC 59.562 63.158 0.00 0.00 34.51 3.58
4345 4652 2.423898 GCACGCTCCCTACAGGCTA 61.424 63.158 0.00 0.00 34.51 3.93
4346 4653 3.775654 GCACGCTCCCTACAGGCT 61.776 66.667 0.00 0.00 34.51 4.58
4347 4654 3.391665 ATGCACGCTCCCTACAGGC 62.392 63.158 0.00 0.00 34.51 4.85
4348 4655 1.227380 GATGCACGCTCCCTACAGG 60.227 63.158 0.00 0.00 0.00 4.00
4349 4656 1.227380 GGATGCACGCTCCCTACAG 60.227 63.158 0.00 0.00 0.00 2.74
4350 4657 1.337384 ATGGATGCACGCTCCCTACA 61.337 55.000 2.38 0.00 31.32 2.74
4351 4658 0.679505 TATGGATGCACGCTCCCTAC 59.320 55.000 2.38 0.00 31.32 3.18
4352 4659 1.644509 ATATGGATGCACGCTCCCTA 58.355 50.000 2.38 0.00 31.32 3.53
4353 4660 0.767375 AATATGGATGCACGCTCCCT 59.233 50.000 2.38 0.00 31.32 4.20
4354 4661 0.877071 CAATATGGATGCACGCTCCC 59.123 55.000 2.38 0.62 31.32 4.30
4355 4662 0.877071 CCAATATGGATGCACGCTCC 59.123 55.000 0.00 0.00 40.96 4.70
4356 4663 1.882912 TCCAATATGGATGCACGCTC 58.117 50.000 0.00 0.00 42.67 5.03
4365 4672 1.839354 TGCTCAGTGCTCCAATATGGA 59.161 47.619 0.00 0.00 45.34 3.41
4366 4673 1.945394 GTGCTCAGTGCTCCAATATGG 59.055 52.381 0.00 0.00 43.37 2.74
4367 4674 2.635714 TGTGCTCAGTGCTCCAATATG 58.364 47.619 0.00 0.00 43.37 1.78
4368 4675 3.474600 GATGTGCTCAGTGCTCCAATAT 58.525 45.455 0.00 0.00 43.37 1.28
4369 4676 2.739609 CGATGTGCTCAGTGCTCCAATA 60.740 50.000 0.00 0.00 43.37 1.90
4370 4677 1.747709 GATGTGCTCAGTGCTCCAAT 58.252 50.000 0.00 0.00 43.37 3.16
4371 4678 0.671472 CGATGTGCTCAGTGCTCCAA 60.671 55.000 0.00 0.00 43.37 3.53
4372 4679 1.079612 CGATGTGCTCAGTGCTCCA 60.080 57.895 0.00 0.00 43.37 3.86
4373 4680 0.179089 ATCGATGTGCTCAGTGCTCC 60.179 55.000 0.00 0.00 43.37 4.70
4374 4681 1.202394 AGATCGATGTGCTCAGTGCTC 60.202 52.381 0.54 0.00 43.37 4.26
4375 4682 0.822811 AGATCGATGTGCTCAGTGCT 59.177 50.000 0.54 0.00 43.37 4.40
4376 4683 1.207390 GAGATCGATGTGCTCAGTGC 58.793 55.000 0.54 0.00 43.25 4.40
4377 4684 1.850377 GGAGATCGATGTGCTCAGTG 58.150 55.000 0.54 0.00 0.00 3.66
4378 4685 0.383590 CGGAGATCGATGTGCTCAGT 59.616 55.000 12.16 0.00 42.43 3.41
4379 4686 0.383590 ACGGAGATCGATGTGCTCAG 59.616 55.000 12.16 10.94 42.43 3.35
4380 4687 0.817654 AACGGAGATCGATGTGCTCA 59.182 50.000 12.16 0.00 42.43 4.26
4381 4688 1.203928 CAACGGAGATCGATGTGCTC 58.796 55.000 12.16 8.10 42.43 4.26
4382 4689 0.807667 GCAACGGAGATCGATGTGCT 60.808 55.000 12.16 0.00 42.53 4.40
4383 4690 1.638467 GCAACGGAGATCGATGTGC 59.362 57.895 0.54 2.46 42.53 4.57
4384 4691 2.301505 GGCAACGGAGATCGATGTG 58.698 57.895 0.54 0.00 42.53 3.21
4385 4692 4.835927 GGCAACGGAGATCGATGT 57.164 55.556 0.54 0.00 42.53 3.06
4408 4715 3.233578 TGAAATGATCGCGAACAAAAGC 58.766 40.909 23.14 12.80 0.00 3.51
4409 4716 4.201428 GCTTGAAATGATCGCGAACAAAAG 60.201 41.667 23.14 21.24 0.00 2.27
4410 4717 3.668191 GCTTGAAATGATCGCGAACAAAA 59.332 39.130 23.14 13.41 0.00 2.44
4411 4718 3.058293 AGCTTGAAATGATCGCGAACAAA 60.058 39.130 23.14 11.58 0.00 2.83
4412 4719 2.483877 AGCTTGAAATGATCGCGAACAA 59.516 40.909 23.14 15.11 0.00 2.83
4413 4720 2.076100 AGCTTGAAATGATCGCGAACA 58.924 42.857 21.65 21.65 0.00 3.18
4414 4721 2.094258 TCAGCTTGAAATGATCGCGAAC 59.906 45.455 15.24 12.18 0.00 3.95
4415 4722 2.345876 TCAGCTTGAAATGATCGCGAA 58.654 42.857 15.24 0.00 0.00 4.70
4416 4723 2.008752 TCAGCTTGAAATGATCGCGA 57.991 45.000 13.09 13.09 0.00 5.87
4417 4724 2.811902 TTCAGCTTGAAATGATCGCG 57.188 45.000 0.00 0.00 32.71 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.