Multiple sequence alignment - TraesCS1D01G262500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G262500 chr1D 100.000 1445 0 0 1 1445 356858352 356859796 0.000000e+00 2669.0
1 TraesCS1D01G262500 chr1D 100.000 1174 0 0 1910 3083 356860261 356861434 0.000000e+00 2169.0
2 TraesCS1D01G262500 chr1D 90.021 471 41 2 940 1410 356361186 356360722 3.400000e-169 604.0
3 TraesCS1D01G262500 chr1D 82.704 503 42 21 1910 2406 356360600 356360137 3.700000e-109 405.0
4 TraesCS1D01G262500 chr1A 92.130 1169 72 11 1910 3073 457945772 457946925 0.000000e+00 1631.0
5 TraesCS1D01G262500 chr1A 96.484 512 15 1 937 1445 457945261 457945772 0.000000e+00 843.0
6 TraesCS1D01G262500 chr1A 89.868 454 31 4 937 1384 457372119 457372563 1.240000e-158 569.0
7 TraesCS1D01G262500 chr1A 82.353 510 44 21 1910 2405 457372993 457373470 4.790000e-108 401.0
8 TraesCS1D01G262500 chr1A 88.889 117 10 2 223 336 457902704 457902820 1.150000e-29 141.0
9 TraesCS1D01G262500 chr1A 88.889 117 10 2 223 336 457923310 457923426 1.150000e-29 141.0
10 TraesCS1D01G262500 chr1A 77.953 254 35 13 2662 2905 454528972 454529214 4.150000e-29 139.0
11 TraesCS1D01G262500 chr1A 96.000 75 3 0 794 868 457945016 457945090 4.170000e-24 122.0
12 TraesCS1D01G262500 chr1A 79.605 152 28 1 1917 2068 457372886 457373034 4.200000e-19 106.0
13 TraesCS1D01G262500 chr1A 100.000 30 0 0 643 672 53549394 53549423 4.290000e-04 56.5
14 TraesCS1D01G262500 chr1B 91.386 801 55 9 2 793 480325646 480326441 0.000000e+00 1085.0
15 TraesCS1D01G262500 chr1B 94.487 653 29 2 794 1445 480326550 480327196 0.000000e+00 1000.0
16 TraesCS1D01G262500 chr1B 90.709 635 44 11 1910 2538 480327196 480327821 0.000000e+00 832.0
17 TraesCS1D01G262500 chr1B 88.535 471 48 2 940 1410 479793155 479793619 1.600000e-157 566.0
18 TraesCS1D01G262500 chr1B 83.466 502 43 19 1910 2406 479794037 479794503 6.110000e-117 431.0
19 TraesCS1D01G262500 chr1B 83.274 281 24 12 2553 2819 480327898 480328169 1.430000e-58 237.0
20 TraesCS1D01G262500 chr1B 96.970 33 0 1 2662 2693 476911943 476911975 2.000000e-03 54.7
21 TraesCS1D01G262500 chr6B 87.245 196 23 2 1014 1208 69707797 69707991 4.000000e-54 222.0
22 TraesCS1D01G262500 chr3B 74.691 162 30 7 530 684 747810531 747810374 9.230000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G262500 chr1D 356858352 356861434 3082 False 2419.000000 2669 100.000000 1 3083 2 chr1D.!!$F1 3082
1 TraesCS1D01G262500 chr1D 356360137 356361186 1049 True 504.500000 604 86.362500 940 2406 2 chr1D.!!$R1 1466
2 TraesCS1D01G262500 chr1A 457945016 457946925 1909 False 865.333333 1631 94.871333 794 3073 3 chr1A.!!$F6 2279
3 TraesCS1D01G262500 chr1A 457372119 457373470 1351 False 358.666667 569 83.942000 937 2405 3 chr1A.!!$F5 1468
4 TraesCS1D01G262500 chr1B 480325646 480328169 2523 False 788.500000 1085 89.964000 2 2819 4 chr1B.!!$F3 2817
5 TraesCS1D01G262500 chr1B 479793155 479794503 1348 False 498.500000 566 86.000500 940 2406 2 chr1B.!!$F2 1466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.03392 CTTTCCCTGGCTTTTGTGGC 59.966 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 3151 1.601419 TTCCTACGAGAAGCACGGGG 61.601 60.0 0.0 0.0 34.93 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.440228 GTCGAGTAGTTCAAGAGCATCC 58.560 50.000 0.00 0.00 33.66 3.51
47 48 5.105146 AGTTCAAGAGCATCCGAGTAGATTT 60.105 40.000 0.00 0.00 33.66 2.17
48 49 4.686972 TCAAGAGCATCCGAGTAGATTTG 58.313 43.478 0.00 0.00 33.66 2.32
64 65 1.670791 TTTGGTCTTCGGTGGTTGTC 58.329 50.000 0.00 0.00 0.00 3.18
87 88 1.275573 GGTAACGAGAGCCTTGAAGGT 59.724 52.381 13.58 0.00 37.80 3.50
89 90 0.038159 AACGAGAGCCTTGAAGGTCG 60.038 55.000 17.75 17.75 37.40 4.79
107 108 2.163211 GTCGTCCGAGTATATTAGGCCC 59.837 54.545 0.00 0.00 0.00 5.80
136 137 1.139734 CCGAGTGATGAGGGTGTCG 59.860 63.158 0.00 0.00 0.00 4.35
189 190 0.033920 CTTTCCCTGGCTTTTGTGGC 59.966 55.000 0.00 0.00 0.00 5.01
199 200 1.410153 GCTTTTGTGGCCCCTCATATG 59.590 52.381 0.00 0.00 0.00 1.78
202 203 1.294041 TTGTGGCCCCTCATATGACA 58.706 50.000 0.00 0.00 0.00 3.58
228 229 4.426313 GCCTTTGGCGGGCCTACT 62.426 66.667 11.55 0.00 43.49 2.57
264 265 0.834687 AACACTCTAGGCCGACCCAA 60.835 55.000 0.00 0.00 36.11 4.12
265 266 0.834687 ACACTCTAGGCCGACCCAAA 60.835 55.000 0.00 0.00 36.11 3.28
337 341 3.075186 GGGCTCCCGGTTTAGTGT 58.925 61.111 0.00 0.00 0.00 3.55
346 350 1.076533 CGGTTTAGTGTCGAGCGCAT 61.077 55.000 11.47 0.00 0.00 4.73
352 356 0.037697 AGTGTCGAGCGCATTAACCA 60.038 50.000 11.47 0.00 0.00 3.67
388 394 9.176181 GTTTTATTTCTTAAAATGTGACGCTGA 57.824 29.630 0.00 0.00 40.82 4.26
427 433 4.401202 TCCTGTTTGGTTTTCTTTGTCTCC 59.599 41.667 0.00 0.00 37.07 3.71
429 435 5.105351 CCTGTTTGGTTTTCTTTGTCTCCTT 60.105 40.000 0.00 0.00 0.00 3.36
430 436 6.353404 TGTTTGGTTTTCTTTGTCTCCTTT 57.647 33.333 0.00 0.00 0.00 3.11
435 441 2.971901 TTCTTTGTCTCCTTTCCCCC 57.028 50.000 0.00 0.00 0.00 5.40
494 501 8.560355 TCAAATTCGTGATTTTCCTCAAGATA 57.440 30.769 0.00 0.00 35.79 1.98
534 541 8.757164 AATTCGTGAACTTTTTCTTCAAAACT 57.243 26.923 0.00 0.00 30.89 2.66
638 645 8.831715 AACTTGATGAACTTTTTCAAAGTTGT 57.168 26.923 17.25 7.56 44.16 3.32
656 663 9.719279 CAAAGTTGTATGTTTTGCAAAATTGAT 57.281 25.926 26.24 19.38 33.47 2.57
676 683 8.665643 ATTGATGAACTTTTTCAAATTGCTGA 57.334 26.923 0.00 0.00 45.01 4.26
868 985 2.747855 GTTGGGCCTCGAAGCTGG 60.748 66.667 4.53 0.00 0.00 4.85
870 987 3.254024 TTGGGCCTCGAAGCTGGTC 62.254 63.158 4.53 0.00 0.00 4.02
900 1017 7.862675 AGCCCAACTAAACAGACTATTTATCT 58.137 34.615 0.00 0.00 0.00 1.98
933 1158 1.610673 TCCCTCAGTCCTCAGCCAC 60.611 63.158 0.00 0.00 0.00 5.01
934 1159 2.664081 CCCTCAGTCCTCAGCCACC 61.664 68.421 0.00 0.00 0.00 4.61
935 1160 1.915266 CCTCAGTCCTCAGCCACCA 60.915 63.158 0.00 0.00 0.00 4.17
936 1161 1.294780 CTCAGTCCTCAGCCACCAC 59.705 63.158 0.00 0.00 0.00 4.16
937 1162 2.177594 CTCAGTCCTCAGCCACCACC 62.178 65.000 0.00 0.00 0.00 4.61
938 1163 2.122413 AGTCCTCAGCCACCACCA 60.122 61.111 0.00 0.00 0.00 4.17
2200 3151 4.284378 AGTATAAGTCGCCGTAGTGTTC 57.716 45.455 0.00 0.00 0.00 3.18
2240 3192 0.872021 AAGAATCGACGATGCGAGCC 60.872 55.000 11.83 0.00 44.26 4.70
2247 3199 3.257561 CGATGCGAGCCTGGTTCG 61.258 66.667 25.90 25.90 39.17 3.95
2271 3223 2.303175 AGTATTGTTGGTGGCGTGTTT 58.697 42.857 0.00 0.00 0.00 2.83
2373 3331 7.921786 AAGTTATGCAAGTCAAGTTATGCTA 57.078 32.000 0.00 0.00 39.49 3.49
2378 3336 4.877823 TGCAAGTCAAGTTATGCTATCTGG 59.122 41.667 0.00 0.00 39.49 3.86
2453 3414 3.189287 AGCTGATCGTTTTTCATTTCGCT 59.811 39.130 0.00 0.00 0.00 4.93
2462 3423 5.624900 CGTTTTTCATTTCGCTCAGATTCAA 59.375 36.000 0.00 0.00 0.00 2.69
2471 3432 3.127548 TCGCTCAGATTCAATTTTCCAGC 59.872 43.478 0.00 0.00 0.00 4.85
2476 3437 6.349611 GCTCAGATTCAATTTTCCAGCTGTTA 60.350 38.462 13.81 0.00 0.00 2.41
2538 3501 3.629398 CCAGGCTAGGATGTTCATTGTTC 59.371 47.826 0.00 0.00 0.00 3.18
2634 3658 5.291858 TGCGTCATATTTCAGTCAGATTGTC 59.708 40.000 0.00 0.00 0.00 3.18
2706 3744 6.121776 TCACAAGAAGGTTTGGAAGCTATA 57.878 37.500 0.00 0.00 38.49 1.31
2713 3751 6.437162 AGAAGGTTTGGAAGCTATATTTTGCA 59.563 34.615 0.00 0.00 38.49 4.08
2774 3812 7.283807 TCAGCTTGCATCATTGTTCAGTATATT 59.716 33.333 0.00 0.00 0.00 1.28
2780 3818 6.714810 GCATCATTGTTCAGTATATTGGGGTA 59.285 38.462 0.00 0.00 0.00 3.69
2784 3822 7.659799 TCATTGTTCAGTATATTGGGGTATTCG 59.340 37.037 0.00 0.00 0.00 3.34
2792 3830 8.198109 CAGTATATTGGGGTATTCGGAGATTAG 58.802 40.741 0.00 0.00 35.04 1.73
2869 3907 1.055040 ACTCAGTGAGCTCTTGCCTT 58.945 50.000 20.31 0.00 40.80 4.35
2887 3925 2.032550 CCTTGCGATGGCTTCTTATGTG 59.967 50.000 0.15 0.00 40.82 3.21
2898 3936 6.620678 TGGCTTCTTATGTGCAGTATTTTTC 58.379 36.000 0.00 0.00 0.00 2.29
2933 3972 5.324409 TCTTTTGTAGTCAAGGCCATTCAT 58.676 37.500 5.01 0.00 34.88 2.57
2948 3987 5.767168 GGCCATTCATCTCAGTATTTTAGCT 59.233 40.000 0.00 0.00 0.00 3.32
2982 4021 9.520204 TTTCTTCAGTTTTTCATTCTTCATGAC 57.480 29.630 0.00 0.00 41.98 3.06
2996 4035 2.479837 TCATGACCGATAAATCACGCC 58.520 47.619 0.00 0.00 0.00 5.68
3037 4076 6.540551 ACTTCTTTTGGTCTCTCTTTGTCTTC 59.459 38.462 0.00 0.00 0.00 2.87
3040 4079 6.316390 TCTTTTGGTCTCTCTTTGTCTTCAAC 59.684 38.462 0.00 0.00 32.93 3.18
3042 4081 3.711704 TGGTCTCTCTTTGTCTTCAACCT 59.288 43.478 0.00 0.00 32.93 3.50
3043 4082 4.202264 TGGTCTCTCTTTGTCTTCAACCTC 60.202 45.833 0.00 0.00 32.93 3.85
3044 4083 4.039852 GGTCTCTCTTTGTCTTCAACCTCT 59.960 45.833 0.00 0.00 32.93 3.69
3056 4095 8.190326 TGTCTTCAACCTCTTCTTATTCAGTA 57.810 34.615 0.00 0.00 0.00 2.74
3067 4106 9.780413 CTCTTCTTATTCAGTATTTTGCCTTTC 57.220 33.333 0.00 0.00 0.00 2.62
3074 4113 8.992835 ATTCAGTATTTTGCCTTTCAATTCTC 57.007 30.769 0.00 0.00 34.12 2.87
3075 4114 7.523293 TCAGTATTTTGCCTTTCAATTCTCA 57.477 32.000 0.00 0.00 34.12 3.27
3076 4115 8.125978 TCAGTATTTTGCCTTTCAATTCTCAT 57.874 30.769 0.00 0.00 34.12 2.90
3077 4116 8.246180 TCAGTATTTTGCCTTTCAATTCTCATC 58.754 33.333 0.00 0.00 34.12 2.92
3078 4117 8.248945 CAGTATTTTGCCTTTCAATTCTCATCT 58.751 33.333 0.00 0.00 34.12 2.90
3079 4118 8.810041 AGTATTTTGCCTTTCAATTCTCATCTT 58.190 29.630 0.00 0.00 34.12 2.40
3080 4119 9.428097 GTATTTTGCCTTTCAATTCTCATCTTT 57.572 29.630 0.00 0.00 34.12 2.52
3081 4120 8.913487 ATTTTGCCTTTCAATTCTCATCTTTT 57.087 26.923 0.00 0.00 34.12 2.27
3082 4121 8.735692 TTTTGCCTTTCAATTCTCATCTTTTT 57.264 26.923 0.00 0.00 34.12 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.624861 ACTCGACCACGTAAGATATTCGT 59.375 43.478 0.00 0.00 43.62 3.85
17 18 2.097629 CGGATGCTCTTGAACTACTCGA 59.902 50.000 0.00 0.00 0.00 4.04
18 19 2.097629 TCGGATGCTCTTGAACTACTCG 59.902 50.000 0.00 0.00 0.00 4.18
37 38 3.179830 CACCGAAGACCAAATCTACTCG 58.820 50.000 0.00 0.00 36.27 4.18
47 48 1.448497 GGACAACCACCGAAGACCA 59.552 57.895 0.00 0.00 35.97 4.02
48 49 4.373771 GGACAACCACCGAAGACC 57.626 61.111 0.00 0.00 35.97 3.85
64 65 1.153628 CAAGGCTCTCGTTACCCGG 60.154 63.158 0.00 0.00 37.11 5.73
74 75 1.878656 CGGACGACCTTCAAGGCTCT 61.879 60.000 2.20 0.00 39.63 4.09
75 76 1.446272 CGGACGACCTTCAAGGCTC 60.446 63.158 2.20 0.00 39.63 4.70
87 88 2.440409 GGGCCTAATATACTCGGACGA 58.560 52.381 0.84 0.00 0.00 4.20
89 90 1.475682 CGGGGCCTAATATACTCGGAC 59.524 57.143 0.84 0.00 0.00 4.79
107 108 0.100682 ATCACTCGGACGACATTCGG 59.899 55.000 0.03 0.00 45.59 4.30
136 137 0.252197 AATCTACTCGGGTGGGTTGC 59.748 55.000 0.00 0.00 0.00 4.17
145 146 3.422417 ACACGTCATCAATCTACTCGG 57.578 47.619 0.00 0.00 0.00 4.63
146 147 3.960621 CGTACACGTCATCAATCTACTCG 59.039 47.826 0.00 0.00 34.11 4.18
189 190 4.624843 GCATGATACCTGTCATATGAGGGG 60.625 50.000 21.62 19.64 36.72 4.79
219 220 1.056660 ATCCATACCAAGTAGGCCCG 58.943 55.000 0.00 0.00 43.14 6.13
228 229 4.051478 AGTGTTGGGGATATCCATACCAA 58.949 43.478 23.27 21.92 36.78 3.67
336 340 2.006772 CCTGGTTAATGCGCTCGAC 58.993 57.895 9.73 1.89 0.00 4.20
337 341 1.813753 GCCTGGTTAATGCGCTCGA 60.814 57.895 9.73 0.00 0.00 4.04
346 350 8.168058 AGAAATAAAACTAAGGAGCCTGGTTAA 58.832 33.333 8.04 2.71 0.00 2.01
427 433 7.338710 AGAAAGAAAAAGAAAAAGGGGGAAAG 58.661 34.615 0.00 0.00 0.00 2.62
429 435 6.884472 AGAAAGAAAAAGAAAAAGGGGGAA 57.116 33.333 0.00 0.00 0.00 3.97
430 436 6.884472 AAGAAAGAAAAAGAAAAAGGGGGA 57.116 33.333 0.00 0.00 0.00 4.81
508 515 9.849166 AGTTTTGAAGAAAAAGTTCACGAATTA 57.151 25.926 0.00 0.00 38.05 1.40
510 517 8.026607 TCAGTTTTGAAGAAAAAGTTCACGAAT 58.973 29.630 0.00 0.00 39.01 3.34
512 519 6.904498 TCAGTTTTGAAGAAAAAGTTCACGA 58.096 32.000 0.00 0.00 39.01 4.35
513 520 7.484641 TCATCAGTTTTGAAGAAAAAGTTCACG 59.515 33.333 0.00 0.00 39.01 4.35
514 521 8.687824 TCATCAGTTTTGAAGAAAAAGTTCAC 57.312 30.769 0.00 0.00 39.01 3.18
516 523 9.741647 AGATCATCAGTTTTGAAGAAAAAGTTC 57.258 29.630 0.00 0.00 39.01 3.01
608 615 8.824159 TTTGAAAAAGTTCATCAAGTTTGACA 57.176 26.923 0.00 0.00 43.29 3.58
640 647 9.339492 GAAAAAGTTCATCAATTTTGCAAAACA 57.661 25.926 26.05 13.68 33.61 2.83
641 648 9.339492 TGAAAAAGTTCATCAATTTTGCAAAAC 57.661 25.926 26.05 12.02 38.88 2.43
868 985 4.451435 GTCTGTTTAGTTGGGCTTGTAGAC 59.549 45.833 0.00 0.00 0.00 2.59
870 987 4.642429 AGTCTGTTTAGTTGGGCTTGTAG 58.358 43.478 0.00 0.00 0.00 2.74
933 1158 0.175760 CTAGATCGGTGTGGTGGTGG 59.824 60.000 0.00 0.00 0.00 4.61
934 1159 0.175760 CCTAGATCGGTGTGGTGGTG 59.824 60.000 0.00 0.00 0.00 4.17
935 1160 0.976073 CCCTAGATCGGTGTGGTGGT 60.976 60.000 0.00 0.00 0.00 4.16
936 1161 0.976073 ACCCTAGATCGGTGTGGTGG 60.976 60.000 0.00 0.00 30.39 4.61
937 1162 0.902531 AACCCTAGATCGGTGTGGTG 59.097 55.000 0.00 0.00 32.55 4.17
938 1163 1.553704 GAAACCCTAGATCGGTGTGGT 59.446 52.381 0.00 0.00 32.55 4.16
2200 3151 1.601419 TTCCTACGAGAAGCACGGGG 61.601 60.000 0.00 0.00 34.93 5.73
2240 3192 4.152402 CACCAACAATACTTCTCGAACCAG 59.848 45.833 0.00 0.00 0.00 4.00
2247 3199 2.159627 CACGCCACCAACAATACTTCTC 59.840 50.000 0.00 0.00 0.00 2.87
2271 3223 5.521010 ACAACAAGATAACTTCGAACGAACA 59.479 36.000 5.53 0.00 33.70 3.18
2340 3297 7.448469 ACTTGACTTGCATAACTTAGTCCATTT 59.552 33.333 10.63 0.00 36.94 2.32
2373 3331 7.504403 AGTTTCATCGAGATCAATAACCAGAT 58.496 34.615 0.00 0.00 0.00 2.90
2378 3336 6.775088 TGCAAGTTTCATCGAGATCAATAAC 58.225 36.000 0.00 0.00 0.00 1.89
2429 3390 4.466828 CGAAATGAAAAACGATCAGCTGT 58.533 39.130 14.67 0.42 0.00 4.40
2453 3414 6.151648 CCTAACAGCTGGAAAATTGAATCTGA 59.848 38.462 19.93 0.00 0.00 3.27
2462 3423 5.010012 CACAAAGACCTAACAGCTGGAAAAT 59.990 40.000 19.93 0.00 0.00 1.82
2471 3432 4.067896 AGATGCACACAAAGACCTAACAG 58.932 43.478 0.00 0.00 0.00 3.16
2476 3437 2.369860 TCTGAGATGCACACAAAGACCT 59.630 45.455 0.00 0.00 0.00 3.85
2525 3488 4.090930 GCATGCAACTGAACAATGAACATC 59.909 41.667 14.21 0.00 0.00 3.06
2538 3501 5.122869 ACAATAGTACTCAAGCATGCAACTG 59.877 40.000 21.98 13.87 0.00 3.16
2603 3602 6.545508 TGACTGAAATATGACGCATGAAAAG 58.454 36.000 0.00 0.00 0.00 2.27
2634 3658 3.863424 GGCTGTTCATTCATGCATCAAAG 59.137 43.478 0.00 0.00 0.00 2.77
2713 3751 7.550906 GGAACAGAAAGCATAGAGAAACTGTAT 59.449 37.037 0.00 0.00 36.55 2.29
2774 3812 7.001099 GATTAACTAATCTCCGAATACCCCA 57.999 40.000 2.76 0.00 39.13 4.96
2838 3876 5.368145 AGCTCACTGAGTGAATAACAACAA 58.632 37.500 16.94 0.00 42.26 2.83
2839 3877 4.960938 AGCTCACTGAGTGAATAACAACA 58.039 39.130 16.94 0.00 42.26 3.33
2840 3878 5.233988 AGAGCTCACTGAGTGAATAACAAC 58.766 41.667 16.94 4.51 42.26 3.32
2852 3890 0.604780 GCAAGGCAAGAGCTCACTGA 60.605 55.000 17.77 0.00 41.70 3.41
2855 3893 1.023513 ATCGCAAGGCAAGAGCTCAC 61.024 55.000 17.77 4.59 41.70 3.51
2869 3907 1.016627 GCACATAAGAAGCCATCGCA 58.983 50.000 0.00 0.00 37.52 5.10
2915 3954 3.519107 TGAGATGAATGGCCTTGACTACA 59.481 43.478 3.32 0.00 0.00 2.74
2916 3955 4.125703 CTGAGATGAATGGCCTTGACTAC 58.874 47.826 3.32 0.00 0.00 2.73
2925 3964 6.072783 GGAGCTAAAATACTGAGATGAATGGC 60.073 42.308 0.00 0.00 0.00 4.40
2933 3972 6.859112 AAGTGAGGAGCTAAAATACTGAGA 57.141 37.500 0.00 0.00 0.00 3.27
2948 3987 7.645058 ATGAAAAACTGAAGAAAAGTGAGGA 57.355 32.000 0.00 0.00 0.00 3.71
2982 4021 0.859232 CCTTCGGCGTGATTTATCGG 59.141 55.000 6.85 0.00 0.00 4.18
2996 4035 1.996191 GAAGTGCAAGTAGAGCCTTCG 59.004 52.381 0.00 0.00 33.19 3.79
3037 4076 7.970614 GGCAAAATACTGAATAAGAAGAGGTTG 59.029 37.037 0.00 0.00 0.00 3.77
3040 4079 7.872113 AGGCAAAATACTGAATAAGAAGAGG 57.128 36.000 0.00 0.00 0.00 3.69
3042 4081 9.295825 TGAAAGGCAAAATACTGAATAAGAAGA 57.704 29.630 0.00 0.00 0.00 2.87
3043 4082 9.912634 TTGAAAGGCAAAATACTGAATAAGAAG 57.087 29.630 0.00 0.00 32.46 2.85
3056 4095 8.913487 AAAAGATGAGAATTGAAAGGCAAAAT 57.087 26.923 0.00 0.00 40.48 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.