Multiple sequence alignment - TraesCS1D01G262300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G262300 chr1D 100.000 5696 0 0 1 5696 356158837 356153142 0.000000e+00 10519.0
1 TraesCS1D01G262300 chr1D 95.015 341 17 0 5352 5692 162712503 162712843 2.340000e-148 536.0
2 TraesCS1D01G262300 chr1D 98.039 51 1 0 5296 5346 162712466 162712516 7.860000e-14 89.8
3 TraesCS1D01G262300 chr1A 93.734 4979 185 41 334 5283 456944886 456940006 0.000000e+00 7348.0
4 TraesCS1D01G262300 chr1A 75.811 339 56 18 2 317 261932271 261931936 1.280000e-31 148.0
5 TraesCS1D01G262300 chr1A 92.647 68 4 1 5296 5363 569762910 569762844 4.700000e-16 97.1
6 TraesCS1D01G262300 chr1B 93.540 4969 173 44 334 5283 478725901 478721062 0.000000e+00 7262.0
7 TraesCS1D01G262300 chr1B 89.367 395 18 7 5296 5690 603499931 603499561 5.160000e-130 475.0
8 TraesCS1D01G262300 chr1B 80.851 188 35 1 36 222 660533963 660533776 4.600000e-31 147.0
9 TraesCS1D01G262300 chr7D 96.481 341 12 0 5352 5692 376354592 376354932 1.070000e-156 564.0
10 TraesCS1D01G262300 chr7D 97.538 325 8 0 5368 5692 116361631 116361307 1.790000e-154 556.0
11 TraesCS1D01G262300 chr7D 96.154 338 13 0 5355 5692 565667715 565667378 2.320000e-153 553.0
12 TraesCS1D01G262300 chr7D 98.039 51 1 0 5296 5346 565667755 565667705 7.860000e-14 89.8
13 TraesCS1D01G262300 chr7D 96.000 50 2 0 5297 5346 376354556 376354605 1.320000e-11 82.4
14 TraesCS1D01G262300 chr6D 96.188 341 13 0 5352 5692 133855489 133855829 4.980000e-155 558.0
15 TraesCS1D01G262300 chr4D 91.872 406 11 8 5287 5692 426647770 426647387 1.080000e-151 547.0
16 TraesCS1D01G262300 chr4D 95.000 340 14 3 5355 5692 20120172 20119834 1.090000e-146 531.0
17 TraesCS1D01G262300 chr2D 95.294 340 13 3 5355 5692 498823146 498822808 2.340000e-148 536.0
18 TraesCS1D01G262300 chr2D 82.741 197 31 3 12 205 611208838 611209034 7.590000e-39 172.0
19 TraesCS1D01G262300 chr5D 95.280 339 13 3 5355 5691 505953480 505953143 8.400000e-148 534.0
20 TraesCS1D01G262300 chr3B 89.340 394 21 4 5296 5688 519786917 519787290 5.160000e-130 475.0
21 TraesCS1D01G262300 chr3B 81.646 158 21 4 10 166 333940752 333940602 2.150000e-24 124.0
22 TraesCS1D01G262300 chr3B 92.000 75 5 1 3926 4000 676272450 676272377 2.810000e-18 104.0
23 TraesCS1D01G262300 chr7A 89.141 396 22 4 5297 5692 733692550 733692924 1.860000e-129 473.0
24 TraesCS1D01G262300 chr7A 80.428 327 54 9 1 319 553237483 553237159 2.050000e-59 241.0
25 TraesCS1D01G262300 chr5B 85.885 418 18 12 5296 5692 138768396 138767999 1.910000e-109 407.0
26 TraesCS1D01G262300 chr5B 80.952 168 27 5 1 166 335808660 335808824 1.670000e-25 128.0
27 TraesCS1D01G262300 chrUn 95.031 161 7 1 5367 5527 50017935 50017776 9.470000e-63 252.0
28 TraesCS1D01G262300 chr7B 80.866 277 40 10 1 268 674690557 674690285 7.480000e-49 206.0
29 TraesCS1D01G262300 chr7B 83.981 206 30 3 1 204 674742775 674742571 1.620000e-45 195.0
30 TraesCS1D01G262300 chr3D 82.266 203 28 7 27 223 377195801 377196001 9.810000e-38 169.0
31 TraesCS1D01G262300 chr2A 79.330 179 31 5 147 319 306178319 306178141 2.790000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G262300 chr1D 356153142 356158837 5695 True 10519 10519 100.000 1 5696 1 chr1D.!!$R1 5695
1 TraesCS1D01G262300 chr1A 456940006 456944886 4880 True 7348 7348 93.734 334 5283 1 chr1A.!!$R2 4949
2 TraesCS1D01G262300 chr1B 478721062 478725901 4839 True 7262 7262 93.540 334 5283 1 chr1B.!!$R1 4949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.109272 ACTGCAGTGTATCCGTGTCG 60.109 55.000 20.97 0.00 0.00 4.35 F
69 70 0.179145 GTGTATCCGTGTCGTGGGAG 60.179 60.000 0.00 0.00 35.40 4.30 F
71 72 0.179145 GTATCCGTGTCGTGGGAGTG 60.179 60.000 0.00 0.00 35.40 3.51 F
194 195 0.253044 ATGGAACCCGGTCATGTCTG 59.747 55.000 0.00 0.00 0.00 3.51 F
334 335 0.322816 TTGCTTGGAGATGCCCTGAC 60.323 55.000 0.00 0.00 34.97 3.51 F
392 393 0.385473 CCAAACGACGCACATGTTCC 60.385 55.000 0.00 0.00 0.00 3.62 F
1673 1698 0.452184 CTTGCTGGCTGCTGATTCAG 59.548 55.000 17.45 9.40 43.37 3.02 F
1849 1874 1.068610 TGGAAATGCTAGCGTTGTTGC 60.069 47.619 22.53 13.55 0.00 4.17 F
2436 2462 1.347707 GTGGTGTGGTCATCCTTGAGA 59.652 52.381 0.00 0.00 30.85 3.27 F
3404 3431 1.993370 GACTGGTACGTGAGCATTGTC 59.007 52.381 0.00 0.37 34.32 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1648 0.243095 AACCAACGGCGAGACTACTC 59.757 55.000 16.62 0.00 39.54 2.59 R
1933 1959 0.721718 GTTTCCAAGAGACATCGGCG 59.278 55.000 0.00 0.00 0.00 6.46 R
2000 2026 1.812235 TGATGTGCCTAGCAACAGTG 58.188 50.000 0.00 0.00 41.47 3.66 R
2436 2462 9.582648 AATAACCAAATAACTAACAGTCAAGGT 57.417 29.630 0.00 0.00 0.00 3.50 R
2440 2466 9.787435 AGACAATAACCAAATAACTAACAGTCA 57.213 29.630 0.00 0.00 0.00 3.41 R
2485 2511 2.236146 CCAGCACCATCCTGTAGTAACA 59.764 50.000 0.00 0.00 0.00 2.41 R
2528 2554 1.635663 ATTTCTTCCCTTGACGCGCG 61.636 55.000 30.96 30.96 0.00 6.86 R
3471 3501 1.873591 GCGTGCACTATATTTGAGGGG 59.126 52.381 16.19 0.00 0.00 4.79 R
4021 4052 2.704065 AGGGACGGTAATACCATGGAAG 59.296 50.000 21.47 3.66 38.47 3.46 R
5452 5504 0.035881 ATCCATGGCGGCTAGATGTG 59.964 55.000 11.43 0.71 33.14 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.154827 GACATGGGAAAGACAAAGGGA 57.845 47.619 0.00 0.00 0.00 4.20
21 22 3.701664 GACATGGGAAAGACAAAGGGAT 58.298 45.455 0.00 0.00 0.00 3.85
22 23 3.696548 GACATGGGAAAGACAAAGGGATC 59.303 47.826 0.00 0.00 0.00 3.36
23 24 2.899303 TGGGAAAGACAAAGGGATCC 57.101 50.000 1.92 1.92 0.00 3.36
24 25 1.004277 TGGGAAAGACAAAGGGATCCG 59.996 52.381 5.45 0.00 0.00 4.18
25 26 1.682087 GGGAAAGACAAAGGGATCCGG 60.682 57.143 5.45 0.00 0.00 5.14
26 27 1.095600 GAAAGACAAAGGGATCCGGC 58.904 55.000 5.45 0.00 0.00 6.13
27 28 0.676782 AAAGACAAAGGGATCCGGCG 60.677 55.000 5.45 0.00 0.00 6.46
28 29 3.202706 GACAAAGGGATCCGGCGC 61.203 66.667 5.45 0.00 0.00 6.53
46 47 4.232310 GGCCGACCGTAGACTACT 57.768 61.111 10.82 0.00 0.00 2.57
47 48 1.726265 GGCCGACCGTAGACTACTG 59.274 63.158 10.82 6.77 0.00 2.74
48 49 1.063811 GCCGACCGTAGACTACTGC 59.936 63.158 10.82 2.48 0.00 4.40
49 50 1.651240 GCCGACCGTAGACTACTGCA 61.651 60.000 10.82 0.00 0.00 4.41
50 51 0.377554 CCGACCGTAGACTACTGCAG 59.622 60.000 13.48 13.48 0.00 4.41
51 52 1.085091 CGACCGTAGACTACTGCAGT 58.915 55.000 25.12 25.12 41.47 4.40
52 53 1.202043 CGACCGTAGACTACTGCAGTG 60.202 57.143 29.57 20.07 37.72 3.66
53 54 1.811359 GACCGTAGACTACTGCAGTGT 59.189 52.381 29.57 23.01 37.72 3.55
54 55 3.005554 GACCGTAGACTACTGCAGTGTA 58.994 50.000 29.57 9.56 37.72 2.90
55 56 3.618351 ACCGTAGACTACTGCAGTGTAT 58.382 45.455 29.57 21.92 37.72 2.29
56 57 3.626670 ACCGTAGACTACTGCAGTGTATC 59.373 47.826 29.57 21.33 37.72 2.24
57 58 3.003482 CCGTAGACTACTGCAGTGTATCC 59.997 52.174 29.57 12.08 37.72 2.59
58 59 3.303197 CGTAGACTACTGCAGTGTATCCG 60.303 52.174 29.57 19.00 37.72 4.18
59 60 2.724454 AGACTACTGCAGTGTATCCGT 58.276 47.619 29.57 15.00 37.72 4.69
60 61 2.423892 AGACTACTGCAGTGTATCCGTG 59.576 50.000 29.57 10.63 37.72 4.94
61 62 2.163815 GACTACTGCAGTGTATCCGTGT 59.836 50.000 29.57 13.44 37.72 4.49
62 63 2.163815 ACTACTGCAGTGTATCCGTGTC 59.836 50.000 29.57 0.00 35.62 3.67
63 64 0.109272 ACTGCAGTGTATCCGTGTCG 60.109 55.000 20.97 0.00 0.00 4.35
64 65 0.109272 CTGCAGTGTATCCGTGTCGT 60.109 55.000 5.25 0.00 0.00 4.34
65 66 0.388006 TGCAGTGTATCCGTGTCGTG 60.388 55.000 0.00 0.00 0.00 4.35
66 67 1.076533 GCAGTGTATCCGTGTCGTGG 61.077 60.000 0.00 0.00 0.00 4.94
67 68 0.457853 CAGTGTATCCGTGTCGTGGG 60.458 60.000 0.00 0.00 0.00 4.61
68 69 0.609957 AGTGTATCCGTGTCGTGGGA 60.610 55.000 0.00 0.00 36.61 4.37
69 70 0.179145 GTGTATCCGTGTCGTGGGAG 60.179 60.000 0.00 0.00 35.40 4.30
70 71 0.609957 TGTATCCGTGTCGTGGGAGT 60.610 55.000 0.00 0.00 35.40 3.85
71 72 0.179145 GTATCCGTGTCGTGGGAGTG 60.179 60.000 0.00 0.00 35.40 3.51
72 73 0.322726 TATCCGTGTCGTGGGAGTGA 60.323 55.000 0.00 0.00 35.40 3.41
73 74 1.183030 ATCCGTGTCGTGGGAGTGAA 61.183 55.000 0.00 0.00 35.40 3.18
74 75 1.372997 CCGTGTCGTGGGAGTGAAG 60.373 63.158 0.00 0.00 0.00 3.02
75 76 2.022129 CGTGTCGTGGGAGTGAAGC 61.022 63.158 0.00 0.00 0.00 3.86
76 77 1.367840 GTGTCGTGGGAGTGAAGCT 59.632 57.895 0.00 0.00 0.00 3.74
77 78 0.667792 GTGTCGTGGGAGTGAAGCTC 60.668 60.000 0.00 0.00 43.39 4.09
84 85 2.738521 GAGTGAAGCTCCGCGCAA 60.739 61.111 8.75 0.00 42.61 4.85
85 86 2.046892 AGTGAAGCTCCGCGCAAT 60.047 55.556 8.75 0.00 42.61 3.56
86 87 2.029904 GAGTGAAGCTCCGCGCAATC 62.030 60.000 8.75 0.00 42.61 2.67
87 88 3.188100 TGAAGCTCCGCGCAATCG 61.188 61.111 8.75 0.00 42.61 3.34
88 89 3.188786 GAAGCTCCGCGCAATCGT 61.189 61.111 8.75 0.00 42.61 3.73
89 90 1.876714 GAAGCTCCGCGCAATCGTA 60.877 57.895 8.75 0.00 42.61 3.43
90 91 2.078958 GAAGCTCCGCGCAATCGTAC 62.079 60.000 8.75 0.00 42.61 3.67
91 92 3.972803 GCTCCGCGCAATCGTACG 61.973 66.667 9.53 9.53 38.92 3.67
92 93 2.578713 CTCCGCGCAATCGTACGT 60.579 61.111 16.05 0.00 38.14 3.57
93 94 2.845739 CTCCGCGCAATCGTACGTG 61.846 63.158 16.05 8.38 39.40 4.49
94 95 4.553101 CCGCGCAATCGTACGTGC 62.553 66.667 18.05 18.05 38.42 5.34
95 96 3.833271 CGCGCAATCGTACGTGCA 61.833 61.111 24.78 4.75 40.94 4.57
96 97 2.275812 GCGCAATCGTACGTGCAC 60.276 61.111 24.78 15.15 40.94 4.57
97 98 3.005901 GCGCAATCGTACGTGCACA 62.006 57.895 24.78 4.03 40.94 4.57
98 99 1.707451 CGCAATCGTACGTGCACAT 59.293 52.632 24.78 3.45 40.94 3.21
99 100 0.917939 CGCAATCGTACGTGCACATA 59.082 50.000 24.78 2.14 40.94 2.29
100 101 1.072154 CGCAATCGTACGTGCACATAG 60.072 52.381 24.78 9.19 40.94 2.23
101 102 1.924524 GCAATCGTACGTGCACATAGT 59.075 47.619 21.76 9.39 40.58 2.12
102 103 2.347452 GCAATCGTACGTGCACATAGTT 59.653 45.455 21.76 0.00 40.58 2.24
103 104 3.181524 GCAATCGTACGTGCACATAGTTT 60.182 43.478 21.76 3.69 40.58 2.66
104 105 4.668177 GCAATCGTACGTGCACATAGTTTT 60.668 41.667 21.76 0.38 40.58 2.43
105 106 5.444877 GCAATCGTACGTGCACATAGTTTTA 60.445 40.000 21.76 0.00 40.58 1.52
106 107 5.691508 ATCGTACGTGCACATAGTTTTAC 57.308 39.130 18.64 5.01 0.00 2.01
107 108 4.797471 TCGTACGTGCACATAGTTTTACT 58.203 39.130 18.64 0.00 0.00 2.24
108 109 5.221880 TCGTACGTGCACATAGTTTTACTT 58.778 37.500 18.64 0.00 0.00 2.24
109 110 5.691305 TCGTACGTGCACATAGTTTTACTTT 59.309 36.000 18.64 0.00 0.00 2.66
110 111 6.200665 TCGTACGTGCACATAGTTTTACTTTT 59.799 34.615 18.64 0.00 0.00 2.27
111 112 6.847289 CGTACGTGCACATAGTTTTACTTTTT 59.153 34.615 18.64 0.00 0.00 1.94
139 140 9.763465 AGTTAAAATATGTCGGAAATGTAAACG 57.237 29.630 0.00 0.00 0.00 3.60
140 141 9.545611 GTTAAAATATGTCGGAAATGTAAACGT 57.454 29.630 0.00 0.00 0.00 3.99
143 144 9.465985 AAAATATGTCGGAAATGTAAACGTTTT 57.534 25.926 20.19 0.00 35.40 2.43
145 146 9.545611 AATATGTCGGAAATGTAAACGTTTTAC 57.454 29.630 20.19 14.70 35.40 2.01
146 147 6.601741 TGTCGGAAATGTAAACGTTTTACT 57.398 33.333 20.19 0.90 35.40 2.24
147 148 6.648502 TGTCGGAAATGTAAACGTTTTACTC 58.351 36.000 20.19 8.92 35.40 2.59
148 149 6.073369 GTCGGAAATGTAAACGTTTTACTCC 58.927 40.000 20.19 15.72 35.40 3.85
149 150 5.990996 TCGGAAATGTAAACGTTTTACTCCT 59.009 36.000 20.19 0.00 35.40 3.69
150 151 6.073657 TCGGAAATGTAAACGTTTTACTCCTG 60.074 38.462 20.19 13.09 35.40 3.86
151 152 6.293027 CGGAAATGTAAACGTTTTACTCCTGT 60.293 38.462 20.19 0.00 35.40 4.00
152 153 7.420002 GGAAATGTAAACGTTTTACTCCTGTT 58.580 34.615 20.19 3.38 35.40 3.16
153 154 7.916977 GGAAATGTAAACGTTTTACTCCTGTTT 59.083 33.333 20.19 9.11 35.40 2.83
154 155 8.623310 AAATGTAAACGTTTTACTCCTGTTTG 57.377 30.769 20.19 0.00 34.80 2.93
155 156 6.740411 TGTAAACGTTTTACTCCTGTTTGT 57.260 33.333 20.19 0.00 34.80 2.83
156 157 7.840342 TGTAAACGTTTTACTCCTGTTTGTA 57.160 32.000 20.19 0.00 34.80 2.41
157 158 8.436046 TGTAAACGTTTTACTCCTGTTTGTAT 57.564 30.769 20.19 0.00 34.80 2.29
158 159 8.336806 TGTAAACGTTTTACTCCTGTTTGTATG 58.663 33.333 20.19 0.00 34.80 2.39
159 160 7.556733 AAACGTTTTACTCCTGTTTGTATGA 57.443 32.000 7.96 0.00 32.02 2.15
160 161 7.556733 AACGTTTTACTCCTGTTTGTATGAA 57.443 32.000 0.00 0.00 0.00 2.57
161 162 7.556733 ACGTTTTACTCCTGTTTGTATGAAA 57.443 32.000 0.00 0.00 0.00 2.69
162 163 8.161699 ACGTTTTACTCCTGTTTGTATGAAAT 57.838 30.769 0.00 0.00 0.00 2.17
163 164 8.287503 ACGTTTTACTCCTGTTTGTATGAAATC 58.712 33.333 0.00 0.00 0.00 2.17
164 165 7.749126 CGTTTTACTCCTGTTTGTATGAAATCC 59.251 37.037 0.00 0.00 0.00 3.01
165 166 6.978343 TTACTCCTGTTTGTATGAAATCCG 57.022 37.500 0.00 0.00 0.00 4.18
166 167 4.906618 ACTCCTGTTTGTATGAAATCCGT 58.093 39.130 0.00 0.00 0.00 4.69
167 168 4.935808 ACTCCTGTTTGTATGAAATCCGTC 59.064 41.667 0.00 0.00 0.00 4.79
168 169 4.900684 TCCTGTTTGTATGAAATCCGTCA 58.099 39.130 0.00 0.00 0.00 4.35
169 170 5.496556 TCCTGTTTGTATGAAATCCGTCAT 58.503 37.500 0.00 0.00 41.21 3.06
170 171 5.353956 TCCTGTTTGTATGAAATCCGTCATG 59.646 40.000 0.00 0.00 38.69 3.07
171 172 5.123820 CCTGTTTGTATGAAATCCGTCATGT 59.876 40.000 0.00 0.00 38.69 3.21
172 173 6.349280 CCTGTTTGTATGAAATCCGTCATGTT 60.349 38.462 0.00 0.00 38.69 2.71
173 174 7.148323 CCTGTTTGTATGAAATCCGTCATGTTA 60.148 37.037 0.00 0.00 38.69 2.41
174 175 8.275015 TGTTTGTATGAAATCCGTCATGTTAT 57.725 30.769 0.00 0.00 38.69 1.89
175 176 9.384764 TGTTTGTATGAAATCCGTCATGTTATA 57.615 29.630 0.00 0.00 38.69 0.98
178 179 8.546597 TGTATGAAATCCGTCATGTTATATGG 57.453 34.615 0.00 0.00 38.69 2.74
179 180 8.371699 TGTATGAAATCCGTCATGTTATATGGA 58.628 33.333 0.00 0.00 38.69 3.41
180 181 9.214957 GTATGAAATCCGTCATGTTATATGGAA 57.785 33.333 0.00 0.00 38.69 3.53
181 182 7.490962 TGAAATCCGTCATGTTATATGGAAC 57.509 36.000 0.00 0.00 34.52 3.62
182 183 6.485313 TGAAATCCGTCATGTTATATGGAACC 59.515 38.462 0.00 0.00 34.52 3.62
183 184 4.345859 TCCGTCATGTTATATGGAACCC 57.654 45.455 0.00 0.00 0.00 4.11
184 185 3.064207 CCGTCATGTTATATGGAACCCG 58.936 50.000 0.00 0.00 0.00 5.28
185 186 3.064207 CGTCATGTTATATGGAACCCGG 58.936 50.000 0.00 0.00 0.00 5.73
186 187 3.493699 CGTCATGTTATATGGAACCCGGT 60.494 47.826 0.00 0.00 0.00 5.28
187 188 4.062991 GTCATGTTATATGGAACCCGGTC 58.937 47.826 0.00 0.00 0.00 4.79
188 189 3.712218 TCATGTTATATGGAACCCGGTCA 59.288 43.478 0.00 0.00 0.00 4.02
189 190 4.349636 TCATGTTATATGGAACCCGGTCAT 59.650 41.667 0.00 1.35 0.00 3.06
190 191 4.079980 TGTTATATGGAACCCGGTCATG 57.920 45.455 0.00 0.00 0.00 3.07
191 192 3.456644 TGTTATATGGAACCCGGTCATGT 59.543 43.478 0.00 0.01 0.00 3.21
192 193 2.930826 ATATGGAACCCGGTCATGTC 57.069 50.000 0.00 0.00 0.00 3.06
193 194 1.874129 TATGGAACCCGGTCATGTCT 58.126 50.000 0.00 0.00 0.00 3.41
194 195 0.253044 ATGGAACCCGGTCATGTCTG 59.747 55.000 0.00 0.00 0.00 3.51
195 196 1.745489 GGAACCCGGTCATGTCTGC 60.745 63.158 0.00 0.00 0.00 4.26
196 197 1.003839 GAACCCGGTCATGTCTGCA 60.004 57.895 0.00 0.00 0.00 4.41
197 198 0.392998 GAACCCGGTCATGTCTGCAT 60.393 55.000 0.00 0.00 35.32 3.96
212 213 7.876936 ATGTCTGCATGAATTTCATCTAGTT 57.123 32.000 8.95 0.02 34.28 2.24
213 214 7.692460 TGTCTGCATGAATTTCATCTAGTTT 57.308 32.000 8.95 0.00 34.28 2.66
214 215 8.791327 TGTCTGCATGAATTTCATCTAGTTTA 57.209 30.769 8.95 1.00 34.28 2.01
215 216 9.399797 TGTCTGCATGAATTTCATCTAGTTTAT 57.600 29.630 8.95 0.00 34.28 1.40
257 258 2.038387 ACTAATGTTGGATGACGGCC 57.962 50.000 0.00 0.00 0.00 6.13
258 259 1.559682 ACTAATGTTGGATGACGGCCT 59.440 47.619 0.00 0.00 0.00 5.19
259 260 2.026262 ACTAATGTTGGATGACGGCCTT 60.026 45.455 0.00 0.00 0.00 4.35
260 261 1.463674 AATGTTGGATGACGGCCTTC 58.536 50.000 1.37 1.37 0.00 3.46
261 262 0.394352 ATGTTGGATGACGGCCTTCC 60.394 55.000 6.80 5.43 39.03 3.46
272 273 3.421567 GGCCTTCCGCATCCTTATT 57.578 52.632 0.00 0.00 40.31 1.40
273 274 1.239347 GGCCTTCCGCATCCTTATTC 58.761 55.000 0.00 0.00 40.31 1.75
274 275 0.868406 GCCTTCCGCATCCTTATTCG 59.132 55.000 0.00 0.00 37.47 3.34
275 276 0.868406 CCTTCCGCATCCTTATTCGC 59.132 55.000 0.00 0.00 0.00 4.70
276 277 1.581934 CTTCCGCATCCTTATTCGCA 58.418 50.000 0.00 0.00 0.00 5.10
277 278 1.528586 CTTCCGCATCCTTATTCGCAG 59.471 52.381 0.00 0.00 0.00 5.18
278 279 0.750249 TCCGCATCCTTATTCGCAGA 59.250 50.000 0.00 0.00 0.00 4.26
279 280 0.861837 CCGCATCCTTATTCGCAGAC 59.138 55.000 0.00 0.00 34.32 3.51
280 281 0.504384 CGCATCCTTATTCGCAGACG 59.496 55.000 0.00 0.00 42.01 4.18
281 282 0.861837 GCATCCTTATTCGCAGACGG 59.138 55.000 0.00 0.00 40.63 4.79
282 283 1.806623 GCATCCTTATTCGCAGACGGT 60.807 52.381 0.00 0.00 40.63 4.83
283 284 2.550978 CATCCTTATTCGCAGACGGTT 58.449 47.619 0.00 0.00 40.63 4.44
284 285 2.754946 TCCTTATTCGCAGACGGTTT 57.245 45.000 0.00 0.00 40.63 3.27
285 286 2.613691 TCCTTATTCGCAGACGGTTTC 58.386 47.619 0.00 0.00 40.63 2.78
286 287 1.664151 CCTTATTCGCAGACGGTTTCC 59.336 52.381 0.00 0.00 40.63 3.13
303 304 2.258591 CGTATCCGCGGATGGAGG 59.741 66.667 43.28 28.54 42.45 4.30
304 305 2.048127 GTATCCGCGGATGGAGGC 60.048 66.667 43.28 25.57 42.45 4.70
305 306 2.523168 TATCCGCGGATGGAGGCA 60.523 61.111 43.28 24.62 42.45 4.75
306 307 2.574018 TATCCGCGGATGGAGGCAG 61.574 63.158 43.28 8.16 42.45 4.85
309 310 4.598894 CGCGGATGGAGGCAGGAG 62.599 72.222 0.00 0.00 0.00 3.69
310 311 3.157252 GCGGATGGAGGCAGGAGA 61.157 66.667 0.00 0.00 0.00 3.71
311 312 2.735772 GCGGATGGAGGCAGGAGAA 61.736 63.158 0.00 0.00 0.00 2.87
312 313 1.907739 CGGATGGAGGCAGGAGAAA 59.092 57.895 0.00 0.00 0.00 2.52
313 314 0.253044 CGGATGGAGGCAGGAGAAAA 59.747 55.000 0.00 0.00 0.00 2.29
314 315 1.133976 CGGATGGAGGCAGGAGAAAAT 60.134 52.381 0.00 0.00 0.00 1.82
315 316 2.684927 CGGATGGAGGCAGGAGAAAATT 60.685 50.000 0.00 0.00 0.00 1.82
316 317 3.369175 GGATGGAGGCAGGAGAAAATTT 58.631 45.455 0.00 0.00 0.00 1.82
317 318 3.131755 GGATGGAGGCAGGAGAAAATTTG 59.868 47.826 0.00 0.00 0.00 2.32
318 319 1.895131 TGGAGGCAGGAGAAAATTTGC 59.105 47.619 0.00 0.00 35.87 3.68
319 320 2.174360 GGAGGCAGGAGAAAATTTGCT 58.826 47.619 0.00 0.00 36.79 3.91
320 321 2.564504 GGAGGCAGGAGAAAATTTGCTT 59.435 45.455 0.00 0.00 36.79 3.91
321 322 3.582780 GAGGCAGGAGAAAATTTGCTTG 58.417 45.455 0.00 0.00 36.79 4.01
322 323 2.301009 AGGCAGGAGAAAATTTGCTTGG 59.699 45.455 0.00 0.00 36.79 3.61
323 324 2.299867 GGCAGGAGAAAATTTGCTTGGA 59.700 45.455 0.00 0.00 36.79 3.53
324 325 3.582780 GCAGGAGAAAATTTGCTTGGAG 58.417 45.455 0.00 0.00 33.88 3.86
325 326 3.256631 GCAGGAGAAAATTTGCTTGGAGA 59.743 43.478 0.00 0.00 33.88 3.71
326 327 4.081807 GCAGGAGAAAATTTGCTTGGAGAT 60.082 41.667 0.00 0.00 33.88 2.75
327 328 5.408356 CAGGAGAAAATTTGCTTGGAGATG 58.592 41.667 0.00 0.00 0.00 2.90
328 329 4.081807 AGGAGAAAATTTGCTTGGAGATGC 60.082 41.667 0.00 0.00 0.00 3.91
329 330 4.179298 GAGAAAATTTGCTTGGAGATGCC 58.821 43.478 0.00 0.00 37.10 4.40
330 331 3.055602 AGAAAATTTGCTTGGAGATGCCC 60.056 43.478 0.00 0.00 34.97 5.36
331 332 2.242882 AATTTGCTTGGAGATGCCCT 57.757 45.000 0.00 0.00 34.97 5.19
332 333 1.481871 ATTTGCTTGGAGATGCCCTG 58.518 50.000 0.00 0.00 34.97 4.45
333 334 0.405198 TTTGCTTGGAGATGCCCTGA 59.595 50.000 0.00 0.00 34.97 3.86
334 335 0.322816 TTGCTTGGAGATGCCCTGAC 60.323 55.000 0.00 0.00 34.97 3.51
335 336 1.300963 GCTTGGAGATGCCCTGACA 59.699 57.895 0.00 0.00 34.97 3.58
336 337 1.028868 GCTTGGAGATGCCCTGACAC 61.029 60.000 0.00 0.00 34.97 3.67
337 338 0.617413 CTTGGAGATGCCCTGACACT 59.383 55.000 0.00 0.00 34.97 3.55
338 339 0.615331 TTGGAGATGCCCTGACACTC 59.385 55.000 0.00 0.00 34.97 3.51
339 340 1.142748 GGAGATGCCCTGACACTCG 59.857 63.158 0.00 0.00 0.00 4.18
346 347 1.338674 TGCCCTGACACTCGGTTTATG 60.339 52.381 0.00 0.00 0.00 1.90
392 393 0.385473 CCAAACGACGCACATGTTCC 60.385 55.000 0.00 0.00 0.00 3.62
409 410 1.325355 TCCGTCTCTCCGAAACAACT 58.675 50.000 0.00 0.00 0.00 3.16
420 421 2.350388 CCGAAACAACTACACATGGTGC 60.350 50.000 0.00 0.00 36.98 5.01
454 455 1.160329 AGCAGCGTCTCACAAACCAC 61.160 55.000 0.00 0.00 0.00 4.16
606 627 4.704833 CACCCCTCGTGCCCACAG 62.705 72.222 0.00 0.00 35.18 3.66
759 781 3.787001 CCACCCGGCTTCCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
812 834 2.514592 CCCACATACCAGCGGCAG 60.515 66.667 1.45 0.00 0.00 4.85
903 926 1.339291 CCTCGGGGGTATAAAGTCGTC 59.661 57.143 0.00 0.00 0.00 4.20
1206 1230 1.216710 GTGCTTCGAGGAGGTGGAG 59.783 63.158 0.00 0.00 0.00 3.86
1442 1466 6.745474 GCCACATGCCTAGATCCTAATTTAGT 60.745 42.308 2.88 0.00 0.00 2.24
1462 1486 1.203162 TGGGATTGCTGGATTTGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
1501 1525 0.523072 ATGTGTCAAGGCGTGATTGC 59.477 50.000 6.37 1.10 38.90 3.56
1572 1597 3.316868 GGGGATATTTTCGATTTTGCGGA 59.683 43.478 0.00 0.00 0.00 5.54
1608 1633 3.750371 TGTAGGCTGTATGTGTTTGCTT 58.250 40.909 0.00 0.00 0.00 3.91
1623 1648 2.691409 TGCTTGAGGAATAACGGAGG 57.309 50.000 0.00 0.00 0.00 4.30
1634 1659 1.661341 TAACGGAGGAGTAGTCTCGC 58.339 55.000 0.00 0.00 41.26 5.03
1673 1698 0.452184 CTTGCTGGCTGCTGATTCAG 59.548 55.000 17.45 9.40 43.37 3.02
1697 1722 9.774742 CAGTTAGTTGAATTAGAAATGTTAGGC 57.225 33.333 0.00 0.00 0.00 3.93
1698 1723 9.740710 AGTTAGTTGAATTAGAAATGTTAGGCT 57.259 29.630 0.00 0.00 0.00 4.58
1699 1724 9.774742 GTTAGTTGAATTAGAAATGTTAGGCTG 57.225 33.333 0.00 0.00 0.00 4.85
1700 1725 7.396540 AGTTGAATTAGAAATGTTAGGCTGG 57.603 36.000 0.00 0.00 0.00 4.85
1701 1726 6.948309 AGTTGAATTAGAAATGTTAGGCTGGT 59.052 34.615 0.00 0.00 0.00 4.00
1702 1727 6.757897 TGAATTAGAAATGTTAGGCTGGTG 57.242 37.500 0.00 0.00 0.00 4.17
1703 1728 5.652014 TGAATTAGAAATGTTAGGCTGGTGG 59.348 40.000 0.00 0.00 0.00 4.61
1704 1729 4.919774 TTAGAAATGTTAGGCTGGTGGA 57.080 40.909 0.00 0.00 0.00 4.02
1705 1730 5.450818 TTAGAAATGTTAGGCTGGTGGAT 57.549 39.130 0.00 0.00 0.00 3.41
1706 1731 6.569127 TTAGAAATGTTAGGCTGGTGGATA 57.431 37.500 0.00 0.00 0.00 2.59
1707 1732 5.653255 AGAAATGTTAGGCTGGTGGATAT 57.347 39.130 0.00 0.00 0.00 1.63
1708 1733 5.380043 AGAAATGTTAGGCTGGTGGATATG 58.620 41.667 0.00 0.00 0.00 1.78
1709 1734 3.795688 ATGTTAGGCTGGTGGATATGG 57.204 47.619 0.00 0.00 0.00 2.74
1710 1735 2.487775 TGTTAGGCTGGTGGATATGGT 58.512 47.619 0.00 0.00 0.00 3.55
1711 1736 2.172505 TGTTAGGCTGGTGGATATGGTG 59.827 50.000 0.00 0.00 0.00 4.17
1712 1737 2.438021 GTTAGGCTGGTGGATATGGTGA 59.562 50.000 0.00 0.00 0.00 4.02
1713 1738 1.825105 AGGCTGGTGGATATGGTGAT 58.175 50.000 0.00 0.00 0.00 3.06
1841 1866 3.379372 TCTGCTTTCATGGAAATGCTAGC 59.621 43.478 8.10 8.10 30.85 3.42
1849 1874 1.068610 TGGAAATGCTAGCGTTGTTGC 60.069 47.619 22.53 13.55 0.00 4.17
1855 1880 1.403679 TGCTAGCGTTGTTGCTTTGTT 59.596 42.857 10.77 0.00 44.46 2.83
1861 1886 2.600731 CGTTGTTGCTTTGTTTCACCA 58.399 42.857 0.00 0.00 0.00 4.17
1933 1959 7.133891 AGTTGCAATATACAGACAAAGTGAC 57.866 36.000 0.59 0.00 0.00 3.67
1935 1961 4.092821 TGCAATATACAGACAAAGTGACGC 59.907 41.667 0.00 0.00 0.00 5.19
2435 2461 1.349026 AGTGGTGTGGTCATCCTTGAG 59.651 52.381 0.00 0.00 30.85 3.02
2436 2462 1.347707 GTGGTGTGGTCATCCTTGAGA 59.652 52.381 0.00 0.00 30.85 3.27
2437 2463 1.347707 TGGTGTGGTCATCCTTGAGAC 59.652 52.381 0.00 0.00 30.85 3.36
2528 2554 2.153057 GCGTGTCGGAAAAATGCTTTTC 59.847 45.455 0.00 0.57 46.57 2.29
2884 2910 2.480037 TCAGAATGTTGCTGCTGTTACG 59.520 45.455 0.00 0.00 37.40 3.18
2977 3003 4.184649 AGGAGAAAGTGTTGGGAACATT 57.815 40.909 0.00 0.00 44.35 2.71
3047 3073 4.660789 ATTGTGGGCTTCTGCATTATTC 57.339 40.909 0.00 0.00 41.91 1.75
3128 3154 9.816787 TTTATTACCTCTTTTATGAAGTTGGGT 57.183 29.630 0.00 0.00 0.00 4.51
3301 3327 7.746703 ACTAATCCCCTAACCAGACAAATATC 58.253 38.462 0.00 0.00 0.00 1.63
3404 3431 1.993370 GACTGGTACGTGAGCATTGTC 59.007 52.381 0.00 0.37 34.32 3.18
3449 3476 5.240891 GTCAGATCTTCTCATGGTTTGTCA 58.759 41.667 0.00 0.00 0.00 3.58
3471 3501 5.415701 TCAAAGAAAGGACATATGGCAGTTC 59.584 40.000 11.56 12.54 0.00 3.01
3497 3527 4.187694 TCAAATATAGTGCACGCATCACA 58.812 39.130 12.01 0.00 36.93 3.58
3500 3530 5.845985 AATATAGTGCACGCATCACATAC 57.154 39.130 12.01 0.00 36.93 2.39
3507 3537 3.002553 TGCACGCATCACATACAATCATC 59.997 43.478 0.00 0.00 0.00 2.92
3551 3581 6.545666 TGGGTTATTAGGTATCAGCATGTTTG 59.454 38.462 0.00 0.00 37.40 2.93
4033 4066 5.653769 CCATTGAGTGTTCTTCCATGGTATT 59.346 40.000 12.58 0.00 0.00 1.89
4043 4076 2.766736 TCCATGGTATTACCGTCCCTT 58.233 47.619 12.58 0.00 42.58 3.95
4044 4077 2.436542 TCCATGGTATTACCGTCCCTTG 59.563 50.000 12.58 0.00 42.58 3.61
4202 4235 1.609208 TTCTCAAAGCTGCCTTCCAC 58.391 50.000 0.00 0.00 0.00 4.02
4210 4243 1.912371 GCTGCCTTCCACGTAAGCAC 61.912 60.000 0.00 0.00 45.62 4.40
4279 4319 3.203716 GCAACTATTTACCCTCCTTCGG 58.796 50.000 0.00 0.00 0.00 4.30
4288 4328 1.080025 CCTCCTTCGGACGTGTTCC 60.080 63.158 0.00 0.00 41.75 3.62
4417 4457 4.559153 CAAACCCATTGAACATGGACTTC 58.441 43.478 2.20 0.00 41.85 3.01
4510 4550 2.154462 CAGGTGACTTAACTGCCTTGG 58.846 52.381 0.00 0.00 40.21 3.61
4537 4577 5.426689 TCAACATTATGCCTCTCACTCTT 57.573 39.130 0.00 0.00 0.00 2.85
4551 4591 7.703197 GCCTCTCACTCTTGTTATTCTACTAAC 59.297 40.741 0.00 0.00 33.17 2.34
4552 4592 8.740906 CCTCTCACTCTTGTTATTCTACTAACA 58.259 37.037 0.00 0.00 39.27 2.41
4567 4607 3.368248 ACTAACATGCAAATGGCCTGAT 58.632 40.909 3.32 0.00 43.89 2.90
4584 4625 3.885297 CCTGATCAAATCCACCACATACC 59.115 47.826 0.00 0.00 0.00 2.73
4613 4654 4.261572 GGCATGCAAACTAACAACTCTCAA 60.262 41.667 21.36 0.00 0.00 3.02
4776 4817 0.108567 TATGTGAGCCAGCGCGTTAA 60.109 50.000 8.43 0.00 41.18 2.01
5149 5200 7.040823 ACCTAAAGAAGAGCTCTGTTTGATTTG 60.041 37.037 24.76 14.76 33.37 2.32
5174 5225 4.758674 ACATCTCTGTTGTGTTTGGATCTG 59.241 41.667 0.00 0.00 28.70 2.90
5177 5228 4.136796 CTCTGTTGTGTTTGGATCTGGAA 58.863 43.478 0.00 0.00 0.00 3.53
5178 5229 4.728772 TCTGTTGTGTTTGGATCTGGAAT 58.271 39.130 0.00 0.00 0.00 3.01
5179 5230 4.761739 TCTGTTGTGTTTGGATCTGGAATC 59.238 41.667 0.00 0.00 0.00 2.52
5180 5231 4.728772 TGTTGTGTTTGGATCTGGAATCT 58.271 39.130 0.00 0.00 0.00 2.40
5184 5235 5.248640 TGTGTTTGGATCTGGAATCTTCTC 58.751 41.667 0.00 0.00 0.00 2.87
5187 5238 5.884232 TGTTTGGATCTGGAATCTTCTCATG 59.116 40.000 0.00 0.00 0.00 3.07
5254 5306 3.782889 ACAGCAGGTGTTTCTGTTTTC 57.217 42.857 0.00 0.00 37.78 2.29
5258 5310 5.359576 ACAGCAGGTGTTTCTGTTTTCATTA 59.640 36.000 0.00 0.00 37.78 1.90
5259 5311 5.916883 CAGCAGGTGTTTCTGTTTTCATTAG 59.083 40.000 0.00 0.00 37.12 1.73
5264 5316 8.405531 CAGGTGTTTCTGTTTTCATTAGAGAAA 58.594 33.333 0.00 0.00 35.82 2.52
5267 5319 8.746751 GTGTTTCTGTTTTCATTAGAGAAAAGC 58.253 33.333 2.43 0.37 45.21 3.51
5284 5336 7.965107 AGAGAAAAGCATCTAAAATTTGCTACG 59.035 33.333 2.13 0.00 45.54 3.51
5285 5337 7.816640 AGAAAAGCATCTAAAATTTGCTACGA 58.183 30.769 2.13 0.00 45.54 3.43
5286 5338 8.296713 AGAAAAGCATCTAAAATTTGCTACGAA 58.703 29.630 2.13 0.00 45.54 3.85
5287 5339 8.810652 AAAAGCATCTAAAATTTGCTACGAAA 57.189 26.923 2.13 0.00 45.54 3.46
5288 5340 8.810652 AAAGCATCTAAAATTTGCTACGAAAA 57.189 26.923 2.13 0.00 45.54 2.29
5289 5341 8.452989 AAGCATCTAAAATTTGCTACGAAAAG 57.547 30.769 2.13 0.00 45.54 2.27
5290 5342 7.029563 AGCATCTAAAATTTGCTACGAAAAGG 58.970 34.615 0.00 0.00 44.51 3.11
5291 5343 6.806739 GCATCTAAAATTTGCTACGAAAAGGT 59.193 34.615 0.00 0.00 33.61 3.50
5292 5344 7.328493 GCATCTAAAATTTGCTACGAAAAGGTT 59.672 33.333 0.00 0.00 33.61 3.50
5293 5345 9.191995 CATCTAAAATTTGCTACGAAAAGGTTT 57.808 29.630 0.00 0.00 0.00 3.27
5294 5346 8.791355 TCTAAAATTTGCTACGAAAAGGTTTC 57.209 30.769 0.00 0.00 0.00 2.78
5295 5347 6.505039 AAAATTTGCTACGAAAAGGTTTCG 57.495 33.333 18.68 18.68 46.36 3.46
5296 5348 3.612472 TTTGCTACGAAAAGGTTTCGG 57.388 42.857 22.69 10.36 45.34 4.30
5297 5349 1.515081 TGCTACGAAAAGGTTTCGGG 58.485 50.000 22.69 16.54 45.34 5.14
5298 5350 0.167470 GCTACGAAAAGGTTTCGGGC 59.833 55.000 22.69 20.77 45.34 6.13
5299 5351 1.515081 CTACGAAAAGGTTTCGGGCA 58.485 50.000 22.69 9.89 45.34 5.36
5300 5352 1.463444 CTACGAAAAGGTTTCGGGCAG 59.537 52.381 22.69 14.29 45.34 4.85
5301 5353 0.464916 ACGAAAAGGTTTCGGGCAGT 60.465 50.000 22.69 3.38 45.34 4.40
5302 5354 1.202675 ACGAAAAGGTTTCGGGCAGTA 60.203 47.619 22.69 0.00 45.34 2.74
5303 5355 1.874872 CGAAAAGGTTTCGGGCAGTAA 59.125 47.619 13.85 0.00 38.19 2.24
5304 5356 2.486592 CGAAAAGGTTTCGGGCAGTAAT 59.513 45.455 13.85 0.00 38.19 1.89
5305 5357 3.425758 CGAAAAGGTTTCGGGCAGTAATC 60.426 47.826 13.85 0.00 38.19 1.75
5306 5358 3.434940 AAAGGTTTCGGGCAGTAATCT 57.565 42.857 0.00 0.00 0.00 2.40
5307 5359 2.403252 AGGTTTCGGGCAGTAATCTG 57.597 50.000 0.00 0.00 43.87 2.90
5315 5367 3.398920 CAGTAATCTGCGCCGGTG 58.601 61.111 11.67 11.67 34.79 4.94
5316 5368 1.447838 CAGTAATCTGCGCCGGTGT 60.448 57.895 17.91 0.00 34.79 4.16
5317 5369 1.447838 AGTAATCTGCGCCGGTGTG 60.448 57.895 17.91 10.23 0.00 3.82
5330 5382 3.284449 GTGTGCCGGCCGAAAGTT 61.284 61.111 30.73 0.00 0.00 2.66
5331 5383 2.517402 TGTGCCGGCCGAAAGTTT 60.517 55.556 30.73 0.00 0.00 2.66
5332 5384 2.254350 GTGCCGGCCGAAAGTTTC 59.746 61.111 30.73 5.47 0.00 2.78
5341 5393 2.858158 GAAAGTTTCGGCCGGTCG 59.142 61.111 25.52 25.52 0.00 4.79
5342 5394 3.304764 GAAAGTTTCGGCCGGTCGC 62.305 63.158 26.77 10.51 0.00 5.19
5343 5395 4.612412 AAGTTTCGGCCGGTCGCA 62.612 61.111 26.77 11.43 40.31 5.10
5379 5431 4.344865 ACCACAGCCGCCCGATTT 62.345 61.111 0.00 0.00 0.00 2.17
5380 5432 2.124901 CCACAGCCGCCCGATTTA 60.125 61.111 0.00 0.00 0.00 1.40
5381 5433 2.469516 CCACAGCCGCCCGATTTAC 61.470 63.158 0.00 0.00 0.00 2.01
5382 5434 2.124860 ACAGCCGCCCGATTTACC 60.125 61.111 0.00 0.00 0.00 2.85
5383 5435 2.189521 CAGCCGCCCGATTTACCT 59.810 61.111 0.00 0.00 0.00 3.08
5384 5436 1.887707 CAGCCGCCCGATTTACCTC 60.888 63.158 0.00 0.00 0.00 3.85
5385 5437 2.064581 AGCCGCCCGATTTACCTCT 61.065 57.895 0.00 0.00 0.00 3.69
5386 5438 0.757935 AGCCGCCCGATTTACCTCTA 60.758 55.000 0.00 0.00 0.00 2.43
5387 5439 0.320697 GCCGCCCGATTTACCTCTAT 59.679 55.000 0.00 0.00 0.00 1.98
5388 5440 1.547372 GCCGCCCGATTTACCTCTATA 59.453 52.381 0.00 0.00 0.00 1.31
5389 5441 2.167900 GCCGCCCGATTTACCTCTATAT 59.832 50.000 0.00 0.00 0.00 0.86
5390 5442 3.369157 GCCGCCCGATTTACCTCTATATT 60.369 47.826 0.00 0.00 0.00 1.28
5391 5443 4.142093 GCCGCCCGATTTACCTCTATATTA 60.142 45.833 0.00 0.00 0.00 0.98
5392 5444 5.625197 GCCGCCCGATTTACCTCTATATTAA 60.625 44.000 0.00 0.00 0.00 1.40
5393 5445 5.809051 CCGCCCGATTTACCTCTATATTAAC 59.191 44.000 0.00 0.00 0.00 2.01
5394 5446 5.809051 CGCCCGATTTACCTCTATATTAACC 59.191 44.000 0.00 0.00 0.00 2.85
5395 5447 5.809051 GCCCGATTTACCTCTATATTAACCG 59.191 44.000 0.00 0.00 0.00 4.44
5396 5448 6.573094 GCCCGATTTACCTCTATATTAACCGT 60.573 42.308 0.00 0.00 0.00 4.83
5397 5449 7.031975 CCCGATTTACCTCTATATTAACCGTC 58.968 42.308 0.00 0.00 0.00 4.79
5398 5450 7.309377 CCCGATTTACCTCTATATTAACCGTCA 60.309 40.741 0.00 0.00 0.00 4.35
5399 5451 7.754027 CCGATTTACCTCTATATTAACCGTCAG 59.246 40.741 0.00 0.00 0.00 3.51
5400 5452 8.509690 CGATTTACCTCTATATTAACCGTCAGA 58.490 37.037 0.00 0.00 0.00 3.27
5403 5455 9.584008 TTTACCTCTATATTAACCGTCAGATCT 57.416 33.333 0.00 0.00 0.00 2.75
5406 5458 9.756571 ACCTCTATATTAACCGTCAGATCTAAT 57.243 33.333 0.00 0.00 0.00 1.73
5409 5461 9.976776 TCTATATTAACCGTCAGATCTAATCCT 57.023 33.333 0.00 0.00 0.00 3.24
5413 5465 5.532664 AACCGTCAGATCTAATCCTTACC 57.467 43.478 0.00 0.00 0.00 2.85
5414 5466 4.543689 ACCGTCAGATCTAATCCTTACCA 58.456 43.478 0.00 0.00 0.00 3.25
5415 5467 4.960469 ACCGTCAGATCTAATCCTTACCAA 59.040 41.667 0.00 0.00 0.00 3.67
5416 5468 5.069251 ACCGTCAGATCTAATCCTTACCAAG 59.931 44.000 0.00 0.00 0.00 3.61
5417 5469 5.069251 CCGTCAGATCTAATCCTTACCAAGT 59.931 44.000 0.00 0.00 0.00 3.16
5418 5470 6.210078 CGTCAGATCTAATCCTTACCAAGTC 58.790 44.000 0.00 0.00 0.00 3.01
5419 5471 6.183360 CGTCAGATCTAATCCTTACCAAGTCA 60.183 42.308 0.00 0.00 0.00 3.41
5420 5472 7.556844 GTCAGATCTAATCCTTACCAAGTCAA 58.443 38.462 0.00 0.00 0.00 3.18
5421 5473 8.041323 GTCAGATCTAATCCTTACCAAGTCAAA 58.959 37.037 0.00 0.00 0.00 2.69
5422 5474 8.041323 TCAGATCTAATCCTTACCAAGTCAAAC 58.959 37.037 0.00 0.00 0.00 2.93
5423 5475 7.010552 CAGATCTAATCCTTACCAAGTCAAACG 59.989 40.741 0.00 0.00 0.00 3.60
5424 5476 4.933400 TCTAATCCTTACCAAGTCAAACGC 59.067 41.667 0.00 0.00 0.00 4.84
5425 5477 2.623878 TCCTTACCAAGTCAAACGCA 57.376 45.000 0.00 0.00 0.00 5.24
5426 5478 2.489971 TCCTTACCAAGTCAAACGCAG 58.510 47.619 0.00 0.00 0.00 5.18
5427 5479 1.069227 CCTTACCAAGTCAAACGCAGC 60.069 52.381 0.00 0.00 0.00 5.25
5428 5480 1.873591 CTTACCAAGTCAAACGCAGCT 59.126 47.619 0.00 0.00 0.00 4.24
5429 5481 1.508632 TACCAAGTCAAACGCAGCTC 58.491 50.000 0.00 0.00 0.00 4.09
5430 5482 0.463654 ACCAAGTCAAACGCAGCTCA 60.464 50.000 0.00 0.00 0.00 4.26
5431 5483 0.877071 CCAAGTCAAACGCAGCTCAT 59.123 50.000 0.00 0.00 0.00 2.90
5432 5484 1.267806 CCAAGTCAAACGCAGCTCATT 59.732 47.619 0.00 0.00 0.00 2.57
5433 5485 2.287788 CCAAGTCAAACGCAGCTCATTT 60.288 45.455 0.00 0.00 0.00 2.32
5434 5486 3.374745 CAAGTCAAACGCAGCTCATTTT 58.625 40.909 0.00 0.00 0.00 1.82
5435 5487 3.273919 AGTCAAACGCAGCTCATTTTC 57.726 42.857 0.00 0.00 0.00 2.29
5436 5488 2.880890 AGTCAAACGCAGCTCATTTTCT 59.119 40.909 0.00 0.00 0.00 2.52
5437 5489 3.316308 AGTCAAACGCAGCTCATTTTCTT 59.684 39.130 0.00 0.00 0.00 2.52
5438 5490 3.665871 GTCAAACGCAGCTCATTTTCTTC 59.334 43.478 0.00 0.00 0.00 2.87
5439 5491 2.982470 CAAACGCAGCTCATTTTCTTCC 59.018 45.455 0.00 0.00 0.00 3.46
5440 5492 2.191128 ACGCAGCTCATTTTCTTCCT 57.809 45.000 0.00 0.00 0.00 3.36
5441 5493 2.079925 ACGCAGCTCATTTTCTTCCTC 58.920 47.619 0.00 0.00 0.00 3.71
5442 5494 1.399791 CGCAGCTCATTTTCTTCCTCC 59.600 52.381 0.00 0.00 0.00 4.30
5443 5495 1.399791 GCAGCTCATTTTCTTCCTCCG 59.600 52.381 0.00 0.00 0.00 4.63
5444 5496 1.399791 CAGCTCATTTTCTTCCTCCGC 59.600 52.381 0.00 0.00 0.00 5.54
5445 5497 1.280421 AGCTCATTTTCTTCCTCCGCT 59.720 47.619 0.00 0.00 0.00 5.52
5446 5498 1.399791 GCTCATTTTCTTCCTCCGCTG 59.600 52.381 0.00 0.00 0.00 5.18
5447 5499 2.012673 CTCATTTTCTTCCTCCGCTGG 58.987 52.381 0.00 0.00 0.00 4.85
5448 5500 1.351017 TCATTTTCTTCCTCCGCTGGT 59.649 47.619 0.00 0.00 0.00 4.00
5449 5501 1.470098 CATTTTCTTCCTCCGCTGGTG 59.530 52.381 0.00 0.00 0.00 4.17
5450 5502 0.472471 TTTTCTTCCTCCGCTGGTGT 59.528 50.000 0.00 0.00 0.00 4.16
5451 5503 1.344065 TTTCTTCCTCCGCTGGTGTA 58.656 50.000 0.00 0.00 0.00 2.90
5452 5504 0.606604 TTCTTCCTCCGCTGGTGTAC 59.393 55.000 0.00 0.00 0.00 2.90
5453 5505 0.541063 TCTTCCTCCGCTGGTGTACA 60.541 55.000 0.00 0.00 0.00 2.90
5454 5506 0.389948 CTTCCTCCGCTGGTGTACAC 60.390 60.000 18.01 18.01 0.00 2.90
5455 5507 1.116536 TTCCTCCGCTGGTGTACACA 61.117 55.000 26.51 12.27 0.00 3.72
5456 5508 0.902984 TCCTCCGCTGGTGTACACAT 60.903 55.000 26.51 0.00 0.00 3.21
5457 5509 0.460284 CCTCCGCTGGTGTACACATC 60.460 60.000 26.51 11.45 0.00 3.06
5458 5510 0.532573 CTCCGCTGGTGTACACATCT 59.467 55.000 26.51 0.00 0.00 2.90
5459 5511 1.749063 CTCCGCTGGTGTACACATCTA 59.251 52.381 26.51 9.39 0.00 1.98
5460 5512 1.749063 TCCGCTGGTGTACACATCTAG 59.251 52.381 26.51 18.14 0.00 2.43
5461 5513 1.560923 CGCTGGTGTACACATCTAGC 58.439 55.000 26.51 24.32 32.59 3.42
5462 5514 1.802880 CGCTGGTGTACACATCTAGCC 60.803 57.143 26.51 8.80 32.43 3.93
5463 5515 1.802880 GCTGGTGTACACATCTAGCCG 60.803 57.143 26.51 6.55 31.09 5.52
5464 5516 0.174845 TGGTGTACACATCTAGCCGC 59.825 55.000 26.51 7.19 0.00 6.53
5465 5517 0.529992 GGTGTACACATCTAGCCGCC 60.530 60.000 26.51 2.19 0.00 6.13
5466 5518 0.174845 GTGTACACATCTAGCCGCCA 59.825 55.000 21.14 0.00 0.00 5.69
5467 5519 1.119684 TGTACACATCTAGCCGCCAT 58.880 50.000 0.00 0.00 0.00 4.40
5468 5520 1.202521 TGTACACATCTAGCCGCCATG 60.203 52.381 0.00 0.00 0.00 3.66
5469 5521 0.392706 TACACATCTAGCCGCCATGG 59.607 55.000 7.63 7.63 42.50 3.66
5470 5522 1.337384 ACACATCTAGCCGCCATGGA 61.337 55.000 18.40 0.00 42.00 3.41
5471 5523 0.035881 CACATCTAGCCGCCATGGAT 59.964 55.000 18.40 0.00 42.00 3.41
5472 5524 0.035881 ACATCTAGCCGCCATGGATG 59.964 55.000 18.40 10.86 42.00 3.51
5473 5525 0.322648 CATCTAGCCGCCATGGATGA 59.677 55.000 18.40 3.63 42.00 2.92
5474 5526 0.612229 ATCTAGCCGCCATGGATGAG 59.388 55.000 18.40 4.57 42.00 2.90
5475 5527 1.670406 CTAGCCGCCATGGATGAGC 60.670 63.158 18.40 11.74 42.00 4.26
5476 5528 3.519973 TAGCCGCCATGGATGAGCG 62.520 63.158 18.40 11.34 42.75 5.03
5477 5529 4.916293 GCCGCCATGGATGAGCGA 62.916 66.667 18.40 0.00 44.46 4.93
5478 5530 2.664185 CCGCCATGGATGAGCGAG 60.664 66.667 18.40 1.85 44.46 5.03
5479 5531 2.664185 CGCCATGGATGAGCGAGG 60.664 66.667 18.40 0.00 44.46 4.63
5480 5532 2.976903 GCCATGGATGAGCGAGGC 60.977 66.667 18.40 0.00 34.71 4.70
5481 5533 2.507452 CCATGGATGAGCGAGGCA 59.493 61.111 5.56 0.00 0.00 4.75
5482 5534 1.890979 CCATGGATGAGCGAGGCAC 60.891 63.158 5.56 0.00 0.00 5.01
5483 5535 1.890979 CATGGATGAGCGAGGCACC 60.891 63.158 0.00 0.00 0.00 5.01
5484 5536 3.112205 ATGGATGAGCGAGGCACCC 62.112 63.158 0.00 0.00 0.00 4.61
5485 5537 3.785859 GGATGAGCGAGGCACCCA 61.786 66.667 0.00 0.00 0.00 4.51
5486 5538 2.202987 GATGAGCGAGGCACCCAG 60.203 66.667 0.00 0.00 0.00 4.45
5487 5539 2.685017 ATGAGCGAGGCACCCAGA 60.685 61.111 0.00 0.00 0.00 3.86
5488 5540 2.914777 GATGAGCGAGGCACCCAGAC 62.915 65.000 0.00 0.00 0.00 3.51
5489 5541 3.386237 GAGCGAGGCACCCAGACT 61.386 66.667 0.00 0.00 39.48 3.24
5493 5545 3.377656 GAGGCACCCAGACTCGAA 58.622 61.111 0.00 0.00 43.93 3.71
5494 5546 1.216710 GAGGCACCCAGACTCGAAG 59.783 63.158 0.00 0.00 43.93 3.79
5495 5547 2.435059 GGCACCCAGACTCGAAGC 60.435 66.667 0.00 0.00 0.00 3.86
5496 5548 2.343758 GCACCCAGACTCGAAGCA 59.656 61.111 0.00 0.00 0.00 3.91
5497 5549 2.029844 GCACCCAGACTCGAAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
5498 5550 1.374758 CACCCAGACTCGAAGCACC 60.375 63.158 0.00 0.00 0.00 5.01
5499 5551 1.837051 ACCCAGACTCGAAGCACCA 60.837 57.895 0.00 0.00 0.00 4.17
5500 5552 1.374758 CCCAGACTCGAAGCACCAC 60.375 63.158 0.00 0.00 0.00 4.16
5501 5553 1.374758 CCAGACTCGAAGCACCACC 60.375 63.158 0.00 0.00 0.00 4.61
5502 5554 1.734477 CAGACTCGAAGCACCACCG 60.734 63.158 0.00 0.00 0.00 4.94
5503 5555 2.432628 GACTCGAAGCACCACCGG 60.433 66.667 0.00 0.00 0.00 5.28
5504 5556 3.934391 GACTCGAAGCACCACCGGG 62.934 68.421 6.32 0.00 41.29 5.73
5549 5601 4.974721 CCCTTGCCACCGGTTGCT 62.975 66.667 28.69 0.00 0.00 3.91
5550 5602 3.673484 CCTTGCCACCGGTTGCTG 61.673 66.667 28.69 20.72 0.00 4.41
5551 5603 4.347453 CTTGCCACCGGTTGCTGC 62.347 66.667 28.69 18.08 0.00 5.25
5580 5632 4.251246 GTGGCCACCTGTGTTTCA 57.749 55.556 26.31 0.00 0.00 2.69
5581 5633 1.733526 GTGGCCACCTGTGTTTCAC 59.266 57.895 26.31 0.00 34.56 3.18
5582 5634 1.821759 TGGCCACCTGTGTTTCACG 60.822 57.895 0.00 0.00 37.14 4.35
5583 5635 2.331451 GCCACCTGTGTTTCACGC 59.669 61.111 0.00 0.00 37.14 5.34
5584 5636 2.186826 GCCACCTGTGTTTCACGCT 61.187 57.895 0.00 0.00 37.14 5.07
5585 5637 1.648720 CCACCTGTGTTTCACGCTG 59.351 57.895 0.00 0.00 37.14 5.18
5587 5639 2.639286 CCTGTGTTTCACGCTGGC 59.361 61.111 1.01 0.00 40.06 4.85
5588 5640 1.893808 CCTGTGTTTCACGCTGGCT 60.894 57.895 1.01 0.00 40.06 4.75
5589 5641 1.571460 CTGTGTTTCACGCTGGCTC 59.429 57.895 0.00 0.00 37.14 4.70
5590 5642 2.162921 CTGTGTTTCACGCTGGCTCG 62.163 60.000 0.00 0.00 37.14 5.03
5591 5643 2.664851 TGTTTCACGCTGGCTCGG 60.665 61.111 4.93 0.00 0.00 4.63
5592 5644 4.090057 GTTTCACGCTGGCTCGGC 62.090 66.667 4.93 0.00 0.00 5.54
5603 5655 3.634072 GCTCGGCGCATGCAGTAG 61.634 66.667 19.57 10.00 45.35 2.57
5604 5656 3.634072 CTCGGCGCATGCAGTAGC 61.634 66.667 19.57 12.65 45.35 3.58
5648 5700 3.554692 CGATGGTCGCAACTCCGC 61.555 66.667 0.00 0.00 31.14 5.54
5649 5701 2.125512 GATGGTCGCAACTCCGCT 60.126 61.111 0.00 0.00 0.00 5.52
5650 5702 2.434884 ATGGTCGCAACTCCGCTG 60.435 61.111 0.00 0.00 0.00 5.18
5685 5737 4.508128 GCGGCGAAGATCACCGGA 62.508 66.667 12.98 0.00 41.97 5.14
5686 5738 2.582498 CGGCGAAGATCACCGGAC 60.582 66.667 9.46 0.00 38.34 4.79
5687 5739 2.582498 GGCGAAGATCACCGGACG 60.582 66.667 9.46 0.00 0.00 4.79
5688 5740 3.255379 GCGAAGATCACCGGACGC 61.255 66.667 9.46 9.69 39.33 5.19
5689 5741 2.949678 CGAAGATCACCGGACGCG 60.950 66.667 9.46 3.53 0.00 6.01
5690 5742 3.255379 GAAGATCACCGGACGCGC 61.255 66.667 9.46 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.154827 TCCCTTTGTCTTTCCCATGTC 57.845 47.619 0.00 0.00 0.00 3.06
1 2 3.564352 GGATCCCTTTGTCTTTCCCATGT 60.564 47.826 0.00 0.00 0.00 3.21
2 3 3.026694 GGATCCCTTTGTCTTTCCCATG 58.973 50.000 0.00 0.00 0.00 3.66
3 4 2.357154 CGGATCCCTTTGTCTTTCCCAT 60.357 50.000 6.06 0.00 0.00 4.00
5 6 1.682087 CCGGATCCCTTTGTCTTTCCC 60.682 57.143 6.06 0.00 0.00 3.97
6 7 1.751437 CCGGATCCCTTTGTCTTTCC 58.249 55.000 6.06 0.00 0.00 3.13
7 8 1.095600 GCCGGATCCCTTTGTCTTTC 58.904 55.000 5.05 0.00 0.00 2.62
8 9 0.676782 CGCCGGATCCCTTTGTCTTT 60.677 55.000 5.05 0.00 0.00 2.52
9 10 1.078426 CGCCGGATCCCTTTGTCTT 60.078 57.895 5.05 0.00 0.00 3.01
10 11 2.584608 CGCCGGATCCCTTTGTCT 59.415 61.111 5.05 0.00 0.00 3.41
11 12 3.202706 GCGCCGGATCCCTTTGTC 61.203 66.667 5.05 0.00 0.00 3.18
29 30 1.726265 CAGTAGTCTACGGTCGGCC 59.274 63.158 0.00 0.00 0.00 6.13
30 31 1.063811 GCAGTAGTCTACGGTCGGC 59.936 63.158 11.18 5.33 0.00 5.54
31 32 0.377554 CTGCAGTAGTCTACGGTCGG 59.622 60.000 5.25 5.78 0.00 4.79
32 33 1.085091 ACTGCAGTAGTCTACGGTCG 58.915 55.000 20.16 5.87 33.17 4.79
33 34 1.811359 ACACTGCAGTAGTCTACGGTC 59.189 52.381 21.20 5.22 37.60 4.79
34 35 1.906990 ACACTGCAGTAGTCTACGGT 58.093 50.000 21.20 7.77 37.60 4.83
35 36 3.003482 GGATACACTGCAGTAGTCTACGG 59.997 52.174 21.20 7.04 37.60 4.02
36 37 3.303197 CGGATACACTGCAGTAGTCTACG 60.303 52.174 21.20 19.08 37.60 3.51
37 38 3.626670 ACGGATACACTGCAGTAGTCTAC 59.373 47.826 21.20 12.07 37.60 2.59
38 39 3.626217 CACGGATACACTGCAGTAGTCTA 59.374 47.826 21.20 7.09 37.60 2.59
39 40 2.423892 CACGGATACACTGCAGTAGTCT 59.576 50.000 21.20 12.39 37.60 3.24
40 41 2.163815 ACACGGATACACTGCAGTAGTC 59.836 50.000 21.20 16.64 37.60 2.59
41 42 2.163815 GACACGGATACACTGCAGTAGT 59.836 50.000 21.20 20.79 41.36 2.73
42 43 2.791503 CGACACGGATACACTGCAGTAG 60.792 54.545 21.20 16.11 0.00 2.57
43 44 1.131693 CGACACGGATACACTGCAGTA 59.868 52.381 21.20 5.19 0.00 2.74
44 45 0.109272 CGACACGGATACACTGCAGT 60.109 55.000 15.25 15.25 0.00 4.40
45 46 0.109272 ACGACACGGATACACTGCAG 60.109 55.000 13.48 13.48 0.00 4.41
46 47 0.388006 CACGACACGGATACACTGCA 60.388 55.000 0.00 0.00 0.00 4.41
47 48 1.076533 CCACGACACGGATACACTGC 61.077 60.000 0.00 0.00 0.00 4.40
48 49 0.457853 CCCACGACACGGATACACTG 60.458 60.000 0.00 0.00 0.00 3.66
49 50 0.609957 TCCCACGACACGGATACACT 60.610 55.000 0.00 0.00 0.00 3.55
50 51 0.179145 CTCCCACGACACGGATACAC 60.179 60.000 0.00 0.00 0.00 2.90
51 52 0.609957 ACTCCCACGACACGGATACA 60.610 55.000 0.00 0.00 0.00 2.29
52 53 0.179145 CACTCCCACGACACGGATAC 60.179 60.000 0.00 0.00 0.00 2.24
53 54 0.322726 TCACTCCCACGACACGGATA 60.323 55.000 0.00 0.00 0.00 2.59
54 55 1.183030 TTCACTCCCACGACACGGAT 61.183 55.000 0.00 0.00 0.00 4.18
55 56 1.802337 CTTCACTCCCACGACACGGA 61.802 60.000 0.00 0.00 0.00 4.69
56 57 1.372997 CTTCACTCCCACGACACGG 60.373 63.158 0.00 0.00 0.00 4.94
57 58 2.022129 GCTTCACTCCCACGACACG 61.022 63.158 0.00 0.00 0.00 4.49
58 59 0.667792 GAGCTTCACTCCCACGACAC 60.668 60.000 0.00 0.00 39.75 3.67
59 60 1.666011 GAGCTTCACTCCCACGACA 59.334 57.895 0.00 0.00 39.75 4.35
60 61 4.580835 GAGCTTCACTCCCACGAC 57.419 61.111 0.00 0.00 39.75 4.34
75 76 2.578713 ACGTACGATTGCGCGGAG 60.579 61.111 24.41 0.00 42.48 4.63
76 77 2.877113 CACGTACGATTGCGCGGA 60.877 61.111 24.41 0.00 42.48 5.54
77 78 4.553101 GCACGTACGATTGCGCGG 62.553 66.667 24.41 0.00 42.48 6.46
78 79 3.833271 TGCACGTACGATTGCGCG 61.833 61.111 24.41 0.00 41.96 6.86
79 80 2.275812 GTGCACGTACGATTGCGC 60.276 61.111 24.41 23.54 41.96 6.09
80 81 0.917939 TATGTGCACGTACGATTGCG 59.082 50.000 24.41 5.70 41.96 4.85
81 82 1.924524 ACTATGTGCACGTACGATTGC 59.075 47.619 24.41 22.04 39.33 3.56
82 83 4.577687 AAACTATGTGCACGTACGATTG 57.422 40.909 24.41 12.10 0.00 2.67
83 84 5.865552 AGTAAAACTATGTGCACGTACGATT 59.134 36.000 24.41 11.45 0.00 3.34
84 85 5.404946 AGTAAAACTATGTGCACGTACGAT 58.595 37.500 24.41 6.97 0.00 3.73
85 86 4.797471 AGTAAAACTATGTGCACGTACGA 58.203 39.130 24.41 0.00 0.00 3.43
86 87 5.505165 AAGTAAAACTATGTGCACGTACG 57.495 39.130 14.85 15.01 0.00 3.67
113 114 9.763465 CGTTTACATTTCCGACATATTTTAACT 57.237 29.630 0.00 0.00 0.00 2.24
114 115 9.545611 ACGTTTACATTTCCGACATATTTTAAC 57.454 29.630 0.00 0.00 0.00 2.01
117 118 9.465985 AAAACGTTTACATTTCCGACATATTTT 57.534 25.926 15.03 0.00 0.00 1.82
119 120 9.545611 GTAAAACGTTTACATTTCCGACATATT 57.454 29.630 15.03 0.00 0.00 1.28
120 121 8.938906 AGTAAAACGTTTACATTTCCGACATAT 58.061 29.630 15.03 0.00 0.00 1.78
121 122 8.309163 AGTAAAACGTTTACATTTCCGACATA 57.691 30.769 15.03 0.00 0.00 2.29
122 123 7.193377 AGTAAAACGTTTACATTTCCGACAT 57.807 32.000 15.03 0.00 0.00 3.06
123 124 6.292811 GGAGTAAAACGTTTACATTTCCGACA 60.293 38.462 15.03 0.00 0.00 4.35
124 125 6.073369 GGAGTAAAACGTTTACATTTCCGAC 58.927 40.000 15.03 2.14 0.00 4.79
125 126 5.990996 AGGAGTAAAACGTTTACATTTCCGA 59.009 36.000 15.03 0.00 0.00 4.55
126 127 6.075280 CAGGAGTAAAACGTTTACATTTCCG 58.925 40.000 15.03 9.58 0.00 4.30
127 128 6.962686 ACAGGAGTAAAACGTTTACATTTCC 58.037 36.000 15.03 15.71 0.00 3.13
128 129 8.739461 CAAACAGGAGTAAAACGTTTACATTTC 58.261 33.333 15.03 7.96 0.00 2.17
129 130 8.245491 ACAAACAGGAGTAAAACGTTTACATTT 58.755 29.630 15.03 0.17 0.00 2.32
130 131 7.764331 ACAAACAGGAGTAAAACGTTTACATT 58.236 30.769 15.03 0.59 0.00 2.71
131 132 7.324354 ACAAACAGGAGTAAAACGTTTACAT 57.676 32.000 15.03 0.99 0.00 2.29
132 133 6.740411 ACAAACAGGAGTAAAACGTTTACA 57.260 33.333 15.03 2.34 0.00 2.41
133 134 8.550376 TCATACAAACAGGAGTAAAACGTTTAC 58.450 33.333 15.03 12.31 0.00 2.01
134 135 8.659925 TCATACAAACAGGAGTAAAACGTTTA 57.340 30.769 15.03 0.00 0.00 2.01
135 136 7.556733 TCATACAAACAGGAGTAAAACGTTT 57.443 32.000 7.96 7.96 0.00 3.60
136 137 7.556733 TTCATACAAACAGGAGTAAAACGTT 57.443 32.000 0.00 0.00 0.00 3.99
137 138 7.556733 TTTCATACAAACAGGAGTAAAACGT 57.443 32.000 0.00 0.00 0.00 3.99
138 139 7.749126 GGATTTCATACAAACAGGAGTAAAACG 59.251 37.037 0.00 0.00 0.00 3.60
139 140 7.749126 CGGATTTCATACAAACAGGAGTAAAAC 59.251 37.037 0.00 0.00 0.00 2.43
140 141 7.446013 ACGGATTTCATACAAACAGGAGTAAAA 59.554 33.333 0.00 0.00 0.00 1.52
141 142 6.938030 ACGGATTTCATACAAACAGGAGTAAA 59.062 34.615 0.00 0.00 0.00 2.01
142 143 6.469410 ACGGATTTCATACAAACAGGAGTAA 58.531 36.000 0.00 0.00 0.00 2.24
143 144 6.045072 ACGGATTTCATACAAACAGGAGTA 57.955 37.500 0.00 0.00 0.00 2.59
144 145 4.906618 ACGGATTTCATACAAACAGGAGT 58.093 39.130 0.00 0.00 0.00 3.85
145 146 4.935205 TGACGGATTTCATACAAACAGGAG 59.065 41.667 0.00 0.00 0.00 3.69
146 147 4.900684 TGACGGATTTCATACAAACAGGA 58.099 39.130 0.00 0.00 0.00 3.86
147 148 5.123820 ACATGACGGATTTCATACAAACAGG 59.876 40.000 0.00 0.00 34.29 4.00
148 149 6.182039 ACATGACGGATTTCATACAAACAG 57.818 37.500 0.00 0.00 34.29 3.16
149 150 6.567687 AACATGACGGATTTCATACAAACA 57.432 33.333 0.00 0.00 34.29 2.83
152 153 8.998377 CCATATAACATGACGGATTTCATACAA 58.002 33.333 0.00 0.00 34.29 2.41
153 154 8.371699 TCCATATAACATGACGGATTTCATACA 58.628 33.333 0.00 0.00 34.29 2.29
154 155 8.771920 TCCATATAACATGACGGATTTCATAC 57.228 34.615 0.00 0.00 34.29 2.39
155 156 9.214957 GTTCCATATAACATGACGGATTTCATA 57.785 33.333 0.00 0.00 34.29 2.15
156 157 7.174946 GGTTCCATATAACATGACGGATTTCAT 59.825 37.037 0.00 0.00 36.62 2.57
157 158 6.485313 GGTTCCATATAACATGACGGATTTCA 59.515 38.462 0.00 0.00 0.00 2.69
158 159 6.072673 GGGTTCCATATAACATGACGGATTTC 60.073 42.308 0.00 0.00 0.00 2.17
159 160 5.768164 GGGTTCCATATAACATGACGGATTT 59.232 40.000 0.00 0.00 0.00 2.17
160 161 5.313712 GGGTTCCATATAACATGACGGATT 58.686 41.667 0.00 0.00 0.00 3.01
161 162 4.562757 CGGGTTCCATATAACATGACGGAT 60.563 45.833 0.00 0.00 0.00 4.18
162 163 3.243941 CGGGTTCCATATAACATGACGGA 60.244 47.826 0.00 0.00 0.00 4.69
163 164 3.064207 CGGGTTCCATATAACATGACGG 58.936 50.000 0.00 0.00 0.00 4.79
164 165 3.064207 CCGGGTTCCATATAACATGACG 58.936 50.000 0.00 0.00 0.00 4.35
165 166 4.062991 GACCGGGTTCCATATAACATGAC 58.937 47.826 6.32 0.00 0.00 3.06
166 167 3.712218 TGACCGGGTTCCATATAACATGA 59.288 43.478 6.32 0.00 0.00 3.07
167 168 4.079980 TGACCGGGTTCCATATAACATG 57.920 45.455 6.32 0.00 0.00 3.21
168 169 4.104102 ACATGACCGGGTTCCATATAACAT 59.896 41.667 6.32 0.00 0.00 2.71
169 170 3.456644 ACATGACCGGGTTCCATATAACA 59.543 43.478 6.32 0.00 0.00 2.41
170 171 4.062991 GACATGACCGGGTTCCATATAAC 58.937 47.826 6.32 0.00 0.00 1.89
171 172 3.971305 AGACATGACCGGGTTCCATATAA 59.029 43.478 6.32 0.00 0.00 0.98
172 173 3.323691 CAGACATGACCGGGTTCCATATA 59.676 47.826 6.32 0.00 0.00 0.86
173 174 2.104792 CAGACATGACCGGGTTCCATAT 59.895 50.000 6.32 0.00 0.00 1.78
174 175 1.484653 CAGACATGACCGGGTTCCATA 59.515 52.381 6.32 0.00 0.00 2.74
175 176 0.253044 CAGACATGACCGGGTTCCAT 59.747 55.000 6.32 0.00 0.00 3.41
176 177 1.676968 CAGACATGACCGGGTTCCA 59.323 57.895 6.32 0.00 0.00 3.53
177 178 1.745489 GCAGACATGACCGGGTTCC 60.745 63.158 6.32 0.00 0.00 3.62
178 179 0.392998 ATGCAGACATGACCGGGTTC 60.393 55.000 6.32 0.00 34.35 3.62
179 180 1.685224 ATGCAGACATGACCGGGTT 59.315 52.632 6.32 0.00 34.35 4.11
180 181 3.403624 ATGCAGACATGACCGGGT 58.596 55.556 6.32 0.00 34.35 5.28
188 189 7.876936 AACTAGATGAAATTCATGCAGACAT 57.123 32.000 13.82 0.78 37.20 3.06
189 190 7.692460 AAACTAGATGAAATTCATGCAGACA 57.308 32.000 13.82 0.00 37.20 3.41
237 238 2.026262 AGGCCGTCATCCAACATTAGTT 60.026 45.455 0.00 0.00 38.88 2.24
238 239 1.559682 AGGCCGTCATCCAACATTAGT 59.440 47.619 0.00 0.00 0.00 2.24
239 240 2.332063 AGGCCGTCATCCAACATTAG 57.668 50.000 0.00 0.00 0.00 1.73
240 241 2.639065 GAAGGCCGTCATCCAACATTA 58.361 47.619 14.36 0.00 0.00 1.90
241 242 1.463674 GAAGGCCGTCATCCAACATT 58.536 50.000 14.36 0.00 0.00 2.71
242 243 0.394352 GGAAGGCCGTCATCCAACAT 60.394 55.000 20.72 0.00 33.30 2.71
243 244 1.002624 GGAAGGCCGTCATCCAACA 60.003 57.895 20.72 0.00 33.30 3.33
244 245 3.905249 GGAAGGCCGTCATCCAAC 58.095 61.111 20.72 0.00 33.30 3.77
254 255 1.239347 GAATAAGGATGCGGAAGGCC 58.761 55.000 0.00 0.00 42.61 5.19
255 256 0.868406 CGAATAAGGATGCGGAAGGC 59.132 55.000 0.00 0.00 43.96 4.35
256 257 0.868406 GCGAATAAGGATGCGGAAGG 59.132 55.000 0.00 0.00 34.32 3.46
257 258 1.528586 CTGCGAATAAGGATGCGGAAG 59.471 52.381 0.00 0.00 33.46 3.46
258 259 1.138069 TCTGCGAATAAGGATGCGGAA 59.862 47.619 0.00 0.00 39.61 4.30
259 260 0.750249 TCTGCGAATAAGGATGCGGA 59.250 50.000 0.00 0.00 40.23 5.54
260 261 0.861837 GTCTGCGAATAAGGATGCGG 59.138 55.000 0.00 0.00 34.32 5.69
261 262 0.504384 CGTCTGCGAATAAGGATGCG 59.496 55.000 0.00 0.00 41.33 4.73
262 263 0.861837 CCGTCTGCGAATAAGGATGC 59.138 55.000 0.00 0.00 41.33 3.91
263 264 2.225068 ACCGTCTGCGAATAAGGATG 57.775 50.000 0.00 0.00 41.33 3.51
264 265 2.981859 AACCGTCTGCGAATAAGGAT 57.018 45.000 0.00 0.00 41.33 3.24
265 266 2.613691 GAAACCGTCTGCGAATAAGGA 58.386 47.619 0.00 0.00 41.33 3.36
266 267 1.664151 GGAAACCGTCTGCGAATAAGG 59.336 52.381 0.00 0.00 41.33 2.69
267 268 1.323534 CGGAAACCGTCTGCGAATAAG 59.676 52.381 1.80 0.00 42.73 1.73
268 269 1.352114 CGGAAACCGTCTGCGAATAA 58.648 50.000 1.80 0.00 42.73 1.40
269 270 3.038946 CGGAAACCGTCTGCGAATA 57.961 52.632 1.80 0.00 42.73 1.75
270 271 3.870606 CGGAAACCGTCTGCGAAT 58.129 55.556 1.80 0.00 42.73 3.34
287 288 2.048127 GCCTCCATCCGCGGATAC 60.048 66.667 38.48 21.50 33.56 2.24
288 289 2.523168 TGCCTCCATCCGCGGATA 60.523 61.111 38.48 24.12 33.56 2.59
289 290 3.933722 CTGCCTCCATCCGCGGAT 61.934 66.667 34.60 34.60 33.56 4.18
292 293 4.598894 CTCCTGCCTCCATCCGCG 62.599 72.222 0.00 0.00 0.00 6.46
293 294 2.257409 TTTCTCCTGCCTCCATCCGC 62.257 60.000 0.00 0.00 0.00 5.54
294 295 0.253044 TTTTCTCCTGCCTCCATCCG 59.747 55.000 0.00 0.00 0.00 4.18
295 296 2.744352 ATTTTCTCCTGCCTCCATCC 57.256 50.000 0.00 0.00 0.00 3.51
296 297 3.429960 GCAAATTTTCTCCTGCCTCCATC 60.430 47.826 0.00 0.00 0.00 3.51
297 298 2.498885 GCAAATTTTCTCCTGCCTCCAT 59.501 45.455 0.00 0.00 0.00 3.41
298 299 1.895131 GCAAATTTTCTCCTGCCTCCA 59.105 47.619 0.00 0.00 0.00 3.86
299 300 2.174360 AGCAAATTTTCTCCTGCCTCC 58.826 47.619 0.00 0.00 35.33 4.30
300 301 3.582780 CAAGCAAATTTTCTCCTGCCTC 58.417 45.455 0.00 0.00 35.33 4.70
301 302 2.301009 CCAAGCAAATTTTCTCCTGCCT 59.699 45.455 0.00 0.00 35.33 4.75
302 303 2.299867 TCCAAGCAAATTTTCTCCTGCC 59.700 45.455 0.00 0.00 35.33 4.85
303 304 3.256631 TCTCCAAGCAAATTTTCTCCTGC 59.743 43.478 0.00 0.00 34.96 4.85
304 305 5.408356 CATCTCCAAGCAAATTTTCTCCTG 58.592 41.667 0.00 0.00 0.00 3.86
305 306 4.081807 GCATCTCCAAGCAAATTTTCTCCT 60.082 41.667 0.00 0.00 0.00 3.69
306 307 4.179298 GCATCTCCAAGCAAATTTTCTCC 58.821 43.478 0.00 0.00 0.00 3.71
307 308 4.179298 GGCATCTCCAAGCAAATTTTCTC 58.821 43.478 0.00 0.00 34.01 2.87
308 309 3.055602 GGGCATCTCCAAGCAAATTTTCT 60.056 43.478 0.00 0.00 36.21 2.52
309 310 3.055602 AGGGCATCTCCAAGCAAATTTTC 60.056 43.478 0.00 0.00 36.21 2.29
310 311 2.908351 AGGGCATCTCCAAGCAAATTTT 59.092 40.909 0.00 0.00 36.21 1.82
311 312 2.235402 CAGGGCATCTCCAAGCAAATTT 59.765 45.455 0.00 0.00 36.21 1.82
312 313 1.829222 CAGGGCATCTCCAAGCAAATT 59.171 47.619 0.00 0.00 36.21 1.82
313 314 1.006281 TCAGGGCATCTCCAAGCAAAT 59.994 47.619 0.00 0.00 36.21 2.32
314 315 0.405198 TCAGGGCATCTCCAAGCAAA 59.595 50.000 0.00 0.00 36.21 3.68
315 316 0.322816 GTCAGGGCATCTCCAAGCAA 60.323 55.000 0.00 0.00 36.21 3.91
316 317 1.300963 GTCAGGGCATCTCCAAGCA 59.699 57.895 0.00 0.00 36.21 3.91
317 318 1.028868 GTGTCAGGGCATCTCCAAGC 61.029 60.000 0.00 0.00 36.21 4.01
318 319 0.617413 AGTGTCAGGGCATCTCCAAG 59.383 55.000 0.00 0.00 36.21 3.61
319 320 0.615331 GAGTGTCAGGGCATCTCCAA 59.385 55.000 0.00 0.00 36.21 3.53
320 321 1.607801 CGAGTGTCAGGGCATCTCCA 61.608 60.000 0.00 0.00 36.21 3.86
321 322 1.142748 CGAGTGTCAGGGCATCTCC 59.857 63.158 0.00 0.00 0.00 3.71
322 323 1.142748 CCGAGTGTCAGGGCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
323 324 1.194781 AACCGAGTGTCAGGGCATCT 61.195 55.000 0.00 0.00 0.00 2.90
324 325 0.321653 AAACCGAGTGTCAGGGCATC 60.322 55.000 0.00 0.00 0.00 3.91
325 326 0.981183 TAAACCGAGTGTCAGGGCAT 59.019 50.000 0.00 0.00 0.00 4.40
326 327 0.981183 ATAAACCGAGTGTCAGGGCA 59.019 50.000 0.00 0.00 0.00 5.36
327 328 1.066430 TCATAAACCGAGTGTCAGGGC 60.066 52.381 0.00 0.00 0.00 5.19
328 329 3.328382 TTCATAAACCGAGTGTCAGGG 57.672 47.619 0.00 0.00 0.00 4.45
329 330 5.682943 TTTTTCATAAACCGAGTGTCAGG 57.317 39.130 0.00 0.00 0.00 3.86
330 331 6.314784 GGATTTTTCATAAACCGAGTGTCAG 58.685 40.000 0.00 0.00 0.00 3.51
331 332 5.182380 GGGATTTTTCATAAACCGAGTGTCA 59.818 40.000 0.00 0.00 0.00 3.58
332 333 5.637809 GGGATTTTTCATAAACCGAGTGTC 58.362 41.667 0.00 0.00 0.00 3.67
333 334 4.155280 CGGGATTTTTCATAAACCGAGTGT 59.845 41.667 0.00 0.00 42.19 3.55
334 335 4.393680 TCGGGATTTTTCATAAACCGAGTG 59.606 41.667 0.00 0.00 43.22 3.51
335 336 4.581868 TCGGGATTTTTCATAAACCGAGT 58.418 39.130 0.00 0.00 43.22 4.18
337 338 5.247084 TCTTCGGGATTTTTCATAAACCGA 58.753 37.500 0.00 0.00 45.96 4.69
338 339 5.554822 TCTTCGGGATTTTTCATAAACCG 57.445 39.130 0.00 0.00 41.06 4.44
339 340 5.105917 TGCTCTTCGGGATTTTTCATAAACC 60.106 40.000 0.00 0.00 0.00 3.27
346 347 3.502211 TGTCTTGCTCTTCGGGATTTTTC 59.498 43.478 0.00 0.00 0.00 2.29
392 393 2.978489 GTGTAGTTGTTTCGGAGAGACG 59.022 50.000 0.00 0.00 45.33 4.18
409 410 3.472809 TGGGACGCACCATGTGTA 58.527 55.556 0.00 0.00 41.77 2.90
420 421 3.805267 GCTCTCAGCAATGGGACG 58.195 61.111 0.00 0.00 41.89 4.79
759 781 4.421365 CCACACTGTCATTGGGGG 57.579 61.111 3.48 0.00 33.39 5.40
850 872 3.075005 GGGAGACTACGCAGCCCA 61.075 66.667 0.00 0.00 38.68 5.36
859 881 2.361070 GGGGGAAATACAGGGGAGACTA 60.361 54.545 0.00 0.00 0.00 2.59
903 926 2.904866 CGCCGAGGAGAGAGAGGG 60.905 72.222 0.00 0.00 0.00 4.30
1442 1466 1.203162 ACACCAAATCCAGCAATCCCA 60.203 47.619 0.00 0.00 0.00 4.37
1462 1486 3.953712 TCCTAAACAGAACTCGCATCA 57.046 42.857 0.00 0.00 0.00 3.07
1572 1597 2.811873 GCCTACAATTCTGGATCCGCAT 60.812 50.000 7.39 0.00 0.00 4.73
1608 1633 4.079901 AGACTACTCCTCCGTTATTCCTCA 60.080 45.833 0.00 0.00 0.00 3.86
1623 1648 0.243095 AACCAACGGCGAGACTACTC 59.757 55.000 16.62 0.00 39.54 2.59
1673 1698 9.774742 CAGCCTAACATTTCTAATTCAACTAAC 57.225 33.333 0.00 0.00 0.00 2.34
1695 1720 1.421268 TCATCACCATATCCACCAGCC 59.579 52.381 0.00 0.00 0.00 4.85
1696 1721 2.105477 AGTCATCACCATATCCACCAGC 59.895 50.000 0.00 0.00 0.00 4.85
1697 1722 3.495629 CCAGTCATCACCATATCCACCAG 60.496 52.174 0.00 0.00 0.00 4.00
1698 1723 2.439135 CCAGTCATCACCATATCCACCA 59.561 50.000 0.00 0.00 0.00 4.17
1699 1724 2.439507 ACCAGTCATCACCATATCCACC 59.560 50.000 0.00 0.00 0.00 4.61
1700 1725 3.845781 ACCAGTCATCACCATATCCAC 57.154 47.619 0.00 0.00 0.00 4.02
1701 1726 3.779738 TGAACCAGTCATCACCATATCCA 59.220 43.478 0.00 0.00 0.00 3.41
1702 1727 4.130118 GTGAACCAGTCATCACCATATCC 58.870 47.826 0.00 0.00 40.00 2.59
1703 1728 5.028549 AGTGAACCAGTCATCACCATATC 57.971 43.478 2.52 0.00 45.55 1.63
1704 1729 5.663106 AGTAGTGAACCAGTCATCACCATAT 59.337 40.000 2.52 0.00 45.55 1.78
1705 1730 5.023452 AGTAGTGAACCAGTCATCACCATA 58.977 41.667 2.52 0.00 45.55 2.74
1706 1731 3.840666 AGTAGTGAACCAGTCATCACCAT 59.159 43.478 2.52 0.00 45.55 3.55
1707 1732 3.239449 AGTAGTGAACCAGTCATCACCA 58.761 45.455 2.52 0.00 45.55 4.17
1708 1733 3.963428 AGTAGTGAACCAGTCATCACC 57.037 47.619 2.52 0.00 45.55 4.02
1709 1734 4.632153 ACAAGTAGTGAACCAGTCATCAC 58.368 43.478 0.00 0.00 44.92 3.06
1710 1735 4.955811 ACAAGTAGTGAACCAGTCATCA 57.044 40.909 0.00 0.00 38.90 3.07
1711 1736 5.297547 TGAACAAGTAGTGAACCAGTCATC 58.702 41.667 0.00 0.00 38.90 2.92
1712 1737 5.290493 TGAACAAGTAGTGAACCAGTCAT 57.710 39.130 0.00 0.00 38.90 3.06
1713 1738 4.746535 TGAACAAGTAGTGAACCAGTCA 57.253 40.909 0.00 0.00 0.00 3.41
1841 1866 2.600731 TGGTGAAACAAAGCAACAACG 58.399 42.857 0.00 0.00 39.98 4.10
1849 1874 9.258826 TCAAATCAAATGTATGGTGAAACAAAG 57.741 29.630 0.00 0.00 39.98 2.77
1855 1880 6.839124 AGCTCAAATCAAATGTATGGTGAA 57.161 33.333 0.00 0.00 0.00 3.18
1933 1959 0.721718 GTTTCCAAGAGACATCGGCG 59.278 55.000 0.00 0.00 0.00 6.46
1935 1961 4.158764 ACTCTAGTTTCCAAGAGACATCGG 59.841 45.833 6.36 0.00 41.51 4.18
2000 2026 1.812235 TGATGTGCCTAGCAACAGTG 58.188 50.000 0.00 0.00 41.47 3.66
2435 2461 7.506328 AACCAAATAACTAACAGTCAAGGTC 57.494 36.000 0.00 0.00 0.00 3.85
2436 2462 9.582648 AATAACCAAATAACTAACAGTCAAGGT 57.417 29.630 0.00 0.00 0.00 3.50
2437 2463 9.840427 CAATAACCAAATAACTAACAGTCAAGG 57.160 33.333 0.00 0.00 0.00 3.61
2440 2466 9.787435 AGACAATAACCAAATAACTAACAGTCA 57.213 29.630 0.00 0.00 0.00 3.41
2485 2511 2.236146 CCAGCACCATCCTGTAGTAACA 59.764 50.000 0.00 0.00 0.00 2.41
2528 2554 1.635663 ATTTCTTCCCTTGACGCGCG 61.636 55.000 30.96 30.96 0.00 6.86
2857 2883 4.634883 ACAGCAGCAACATTCTGAATAGAG 59.365 41.667 1.98 0.00 33.70 2.43
2884 2910 2.737376 GTGCGGGTTGAGGTCGAC 60.737 66.667 7.13 7.13 0.00 4.20
2977 3003 8.995027 AAATATAAATGGTTACCAGATCAGCA 57.005 30.769 10.74 0.00 36.75 4.41
3128 3154 6.326323 TGGACATTAGAATGCTCATACCAGTA 59.674 38.462 2.09 0.00 40.04 2.74
3404 3431 4.202472 ACCAGGAGGAAAGGTTTCTAACAG 60.202 45.833 0.00 0.00 38.69 3.16
3449 3476 4.706962 GGAACTGCCATATGTCCTTTCTTT 59.293 41.667 1.24 0.00 36.34 2.52
3471 3501 1.873591 GCGTGCACTATATTTGAGGGG 59.126 52.381 16.19 0.00 0.00 4.79
3497 3527 7.940178 TGCTATTACGAAACGATGATTGTAT 57.060 32.000 0.00 0.00 0.00 2.29
3500 3530 6.649436 ACATGCTATTACGAAACGATGATTG 58.351 36.000 0.00 0.00 0.00 2.67
3507 3537 4.142773 ACCCAAACATGCTATTACGAAACG 60.143 41.667 0.00 0.00 0.00 3.60
3551 3581 8.958119 TTTCTCAAATGTATACACTGTATCCC 57.042 34.615 7.96 0.00 0.00 3.85
4021 4052 2.704065 AGGGACGGTAATACCATGGAAG 59.296 50.000 21.47 3.66 38.47 3.46
4033 4066 5.018809 AGAACTACAATACAAGGGACGGTA 58.981 41.667 0.00 0.00 0.00 4.02
4202 4235 3.160777 AGTTTAGGATCCGTGCTTACG 57.839 47.619 5.98 0.00 0.00 3.18
4288 4328 3.042189 CAACACATGTGCCTGTAAAACG 58.958 45.455 25.68 0.00 0.00 3.60
4417 4457 5.675575 GCAAGATTCTTCAATGTGTGCTAGG 60.676 44.000 0.00 0.00 0.00 3.02
4510 4550 5.996513 AGTGAGAGGCATAATGTTGATGATC 59.003 40.000 0.00 0.00 0.00 2.92
4537 4577 7.416213 GGCCATTTGCATGTTAGTAGAATAACA 60.416 37.037 0.00 5.16 41.92 2.41
4552 4592 3.181458 GGATTTGATCAGGCCATTTGCAT 60.181 43.478 5.01 0.00 43.89 3.96
4567 4607 1.003696 TGCGGTATGTGGTGGATTTGA 59.996 47.619 0.00 0.00 0.00 2.69
4584 4625 0.240678 TTAGTTTGCATGCCACTGCG 59.759 50.000 23.52 0.00 45.30 5.18
4591 4632 4.488126 TGAGAGTTGTTAGTTTGCATGC 57.512 40.909 11.82 11.82 0.00 4.06
4776 4817 7.390027 AGTACTTGAACTGAATGAAGTGCTAT 58.610 34.615 0.00 0.00 38.92 2.97
4937 4987 2.695666 ACCAGACGCATATACAAGAGCT 59.304 45.455 0.00 0.00 0.00 4.09
5149 5200 5.471456 AGATCCAAACACAACAGAGATGTTC 59.529 40.000 0.00 0.00 35.54 3.18
5174 5225 6.404074 CCTTAAACAGCACATGAGAAGATTCC 60.404 42.308 0.00 0.00 0.00 3.01
5177 5228 4.946157 CCCTTAAACAGCACATGAGAAGAT 59.054 41.667 0.00 0.00 0.00 2.40
5178 5229 4.202461 ACCCTTAAACAGCACATGAGAAGA 60.202 41.667 0.00 0.00 0.00 2.87
5179 5230 4.074970 ACCCTTAAACAGCACATGAGAAG 58.925 43.478 0.00 0.00 0.00 2.85
5180 5231 3.820467 CACCCTTAAACAGCACATGAGAA 59.180 43.478 0.00 0.00 0.00 2.87
5184 5235 2.622942 ACACACCCTTAAACAGCACATG 59.377 45.455 0.00 0.00 0.00 3.21
5187 5238 2.021457 ACACACACCCTTAAACAGCAC 58.979 47.619 0.00 0.00 0.00 4.40
5267 5319 8.742554 AACCTTTTCGTAGCAAATTTTAGATG 57.257 30.769 0.00 0.00 0.00 2.90
5283 5335 1.515081 TACTGCCCGAAACCTTTTCG 58.485 50.000 12.94 12.94 41.21 3.46
5284 5336 3.756963 AGATTACTGCCCGAAACCTTTTC 59.243 43.478 0.00 0.00 0.00 2.29
5285 5337 3.506067 CAGATTACTGCCCGAAACCTTTT 59.494 43.478 0.00 0.00 37.33 2.27
5286 5338 3.081804 CAGATTACTGCCCGAAACCTTT 58.918 45.455 0.00 0.00 37.33 3.11
5287 5339 2.711542 CAGATTACTGCCCGAAACCTT 58.288 47.619 0.00 0.00 37.33 3.50
5288 5340 2.403252 CAGATTACTGCCCGAAACCT 57.597 50.000 0.00 0.00 37.33 3.50
5298 5350 1.447838 ACACCGGCGCAGATTACTG 60.448 57.895 10.83 0.00 45.91 2.74
5299 5351 1.447838 CACACCGGCGCAGATTACT 60.448 57.895 10.83 0.00 0.00 2.24
5300 5352 3.089784 CACACCGGCGCAGATTAC 58.910 61.111 10.83 0.00 0.00 1.89
5301 5353 2.817834 GCACACCGGCGCAGATTA 60.818 61.111 10.83 0.00 0.00 1.75
5313 5365 2.726850 GAAACTTTCGGCCGGCACAC 62.727 60.000 30.85 10.33 0.00 3.82
5314 5366 2.517402 AAACTTTCGGCCGGCACA 60.517 55.556 30.85 11.23 0.00 4.57
5315 5367 2.254350 GAAACTTTCGGCCGGCAC 59.746 61.111 30.85 16.91 0.00 5.01
5324 5376 2.858158 CGACCGGCCGAAACTTTC 59.142 61.111 30.73 11.44 0.00 2.62
5325 5377 3.351416 GCGACCGGCCGAAACTTT 61.351 61.111 30.73 2.44 34.80 2.66
5326 5378 4.612412 TGCGACCGGCCGAAACTT 62.612 61.111 30.73 4.57 42.61 2.66
5362 5414 2.961893 TAAATCGGGCGGCTGTGGT 61.962 57.895 18.34 6.41 0.00 4.16
5363 5415 2.124901 TAAATCGGGCGGCTGTGG 60.125 61.111 18.34 0.57 0.00 4.17
5364 5416 2.469516 GGTAAATCGGGCGGCTGTG 61.470 63.158 18.34 3.83 0.00 3.66
5365 5417 2.124860 GGTAAATCGGGCGGCTGT 60.125 61.111 18.34 0.66 0.00 4.40
5366 5418 1.887707 GAGGTAAATCGGGCGGCTG 60.888 63.158 12.43 12.43 0.00 4.85
5367 5419 0.757935 TAGAGGTAAATCGGGCGGCT 60.758 55.000 9.56 0.00 0.00 5.52
5368 5420 0.320697 ATAGAGGTAAATCGGGCGGC 59.679 55.000 0.00 0.00 0.00 6.53
5369 5421 4.467198 AATATAGAGGTAAATCGGGCGG 57.533 45.455 0.00 0.00 0.00 6.13
5370 5422 5.809051 GGTTAATATAGAGGTAAATCGGGCG 59.191 44.000 0.00 0.00 0.00 6.13
5371 5423 5.809051 CGGTTAATATAGAGGTAAATCGGGC 59.191 44.000 0.00 0.00 0.00 6.13
5372 5424 6.928520 ACGGTTAATATAGAGGTAAATCGGG 58.071 40.000 0.00 0.00 0.00 5.14
5373 5425 7.596494 TGACGGTTAATATAGAGGTAAATCGG 58.404 38.462 0.00 0.00 0.00 4.18
5374 5426 8.509690 TCTGACGGTTAATATAGAGGTAAATCG 58.490 37.037 0.00 0.00 0.00 3.34
5377 5429 9.584008 AGATCTGACGGTTAATATAGAGGTAAA 57.416 33.333 0.00 0.00 0.00 2.01
5380 5432 9.756571 ATTAGATCTGACGGTTAATATAGAGGT 57.243 33.333 5.18 0.00 0.00 3.85
5383 5435 9.976776 AGGATTAGATCTGACGGTTAATATAGA 57.023 33.333 5.18 0.00 0.00 1.98
5387 5439 8.800332 GGTAAGGATTAGATCTGACGGTTAATA 58.200 37.037 5.18 0.00 0.00 0.98
5388 5440 7.289317 TGGTAAGGATTAGATCTGACGGTTAAT 59.711 37.037 5.18 0.00 0.00 1.40
5389 5441 6.608405 TGGTAAGGATTAGATCTGACGGTTAA 59.392 38.462 5.18 0.00 0.00 2.01
5390 5442 6.131264 TGGTAAGGATTAGATCTGACGGTTA 58.869 40.000 5.18 0.00 0.00 2.85
5391 5443 4.960469 TGGTAAGGATTAGATCTGACGGTT 59.040 41.667 5.18 0.00 0.00 4.44
5392 5444 4.543689 TGGTAAGGATTAGATCTGACGGT 58.456 43.478 5.18 0.00 0.00 4.83
5393 5445 5.069251 ACTTGGTAAGGATTAGATCTGACGG 59.931 44.000 5.18 0.00 0.00 4.79
5394 5446 6.150396 ACTTGGTAAGGATTAGATCTGACG 57.850 41.667 5.18 0.00 0.00 4.35
5395 5447 7.113658 TGACTTGGTAAGGATTAGATCTGAC 57.886 40.000 5.18 0.00 0.00 3.51
5396 5448 7.733773 TTGACTTGGTAAGGATTAGATCTGA 57.266 36.000 5.18 0.00 0.00 3.27
5397 5449 7.010552 CGTTTGACTTGGTAAGGATTAGATCTG 59.989 40.741 5.18 0.00 0.00 2.90
5398 5450 7.042335 CGTTTGACTTGGTAAGGATTAGATCT 58.958 38.462 0.00 0.00 0.00 2.75
5399 5451 6.238130 GCGTTTGACTTGGTAAGGATTAGATC 60.238 42.308 0.00 0.00 0.00 2.75
5400 5452 5.585047 GCGTTTGACTTGGTAAGGATTAGAT 59.415 40.000 0.00 0.00 0.00 1.98
5401 5453 4.933400 GCGTTTGACTTGGTAAGGATTAGA 59.067 41.667 0.00 0.00 0.00 2.10
5402 5454 4.693566 TGCGTTTGACTTGGTAAGGATTAG 59.306 41.667 0.00 0.00 0.00 1.73
5403 5455 4.643463 TGCGTTTGACTTGGTAAGGATTA 58.357 39.130 0.00 0.00 0.00 1.75
5404 5456 3.482436 TGCGTTTGACTTGGTAAGGATT 58.518 40.909 0.00 0.00 0.00 3.01
5405 5457 3.074412 CTGCGTTTGACTTGGTAAGGAT 58.926 45.455 0.00 0.00 0.00 3.24
5406 5458 2.489971 CTGCGTTTGACTTGGTAAGGA 58.510 47.619 0.00 0.00 0.00 3.36
5407 5459 1.069227 GCTGCGTTTGACTTGGTAAGG 60.069 52.381 0.00 0.00 0.00 2.69
5408 5460 1.873591 AGCTGCGTTTGACTTGGTAAG 59.126 47.619 0.00 0.00 0.00 2.34
5409 5461 1.871039 GAGCTGCGTTTGACTTGGTAA 59.129 47.619 0.00 0.00 0.00 2.85
5410 5462 1.202592 TGAGCTGCGTTTGACTTGGTA 60.203 47.619 0.00 0.00 0.00 3.25
5411 5463 0.463654 TGAGCTGCGTTTGACTTGGT 60.464 50.000 0.00 0.00 0.00 3.67
5412 5464 0.877071 ATGAGCTGCGTTTGACTTGG 59.123 50.000 0.00 0.00 0.00 3.61
5413 5465 2.693797 AATGAGCTGCGTTTGACTTG 57.306 45.000 0.00 0.00 0.00 3.16
5414 5466 3.316308 AGAAAATGAGCTGCGTTTGACTT 59.684 39.130 0.00 0.00 35.91 3.01
5415 5467 2.880890 AGAAAATGAGCTGCGTTTGACT 59.119 40.909 0.00 0.00 35.91 3.41
5416 5468 3.273919 AGAAAATGAGCTGCGTTTGAC 57.726 42.857 0.00 0.00 35.91 3.18
5417 5469 3.304659 GGAAGAAAATGAGCTGCGTTTGA 60.305 43.478 0.00 0.00 35.91 2.69
5418 5470 2.982470 GGAAGAAAATGAGCTGCGTTTG 59.018 45.455 0.00 0.00 35.91 2.93
5419 5471 2.887152 AGGAAGAAAATGAGCTGCGTTT 59.113 40.909 0.00 0.00 37.31 3.60
5420 5472 2.485814 GAGGAAGAAAATGAGCTGCGTT 59.514 45.455 0.00 0.00 0.00 4.84
5421 5473 2.079925 GAGGAAGAAAATGAGCTGCGT 58.920 47.619 0.00 0.00 0.00 5.24
5422 5474 1.399791 GGAGGAAGAAAATGAGCTGCG 59.600 52.381 0.00 0.00 0.00 5.18
5423 5475 1.399791 CGGAGGAAGAAAATGAGCTGC 59.600 52.381 0.00 0.00 0.00 5.25
5424 5476 1.399791 GCGGAGGAAGAAAATGAGCTG 59.600 52.381 0.00 0.00 0.00 4.24
5425 5477 1.280421 AGCGGAGGAAGAAAATGAGCT 59.720 47.619 0.00 0.00 0.00 4.09
5426 5478 1.399791 CAGCGGAGGAAGAAAATGAGC 59.600 52.381 0.00 0.00 0.00 4.26
5427 5479 2.012673 CCAGCGGAGGAAGAAAATGAG 58.987 52.381 0.00 0.00 0.00 2.90
5428 5480 1.351017 ACCAGCGGAGGAAGAAAATGA 59.649 47.619 1.50 0.00 0.00 2.57
5429 5481 1.470098 CACCAGCGGAGGAAGAAAATG 59.530 52.381 1.50 0.00 0.00 2.32
5430 5482 1.073923 ACACCAGCGGAGGAAGAAAAT 59.926 47.619 1.50 0.00 0.00 1.82
5431 5483 0.472471 ACACCAGCGGAGGAAGAAAA 59.528 50.000 1.50 0.00 0.00 2.29
5432 5484 1.001633 GTACACCAGCGGAGGAAGAAA 59.998 52.381 1.50 0.00 0.00 2.52
5433 5485 0.606604 GTACACCAGCGGAGGAAGAA 59.393 55.000 1.50 0.00 0.00 2.52
5434 5486 0.541063 TGTACACCAGCGGAGGAAGA 60.541 55.000 0.00 0.00 0.00 2.87
5435 5487 0.389948 GTGTACACCAGCGGAGGAAG 60.390 60.000 15.42 0.00 0.00 3.46
5436 5488 1.116536 TGTGTACACCAGCGGAGGAA 61.117 55.000 22.91 0.00 0.00 3.36
5437 5489 0.902984 ATGTGTACACCAGCGGAGGA 60.903 55.000 22.91 1.35 0.00 3.71
5438 5490 0.460284 GATGTGTACACCAGCGGAGG 60.460 60.000 22.91 0.00 0.00 4.30
5439 5491 0.532573 AGATGTGTACACCAGCGGAG 59.467 55.000 22.91 0.00 0.00 4.63
5440 5492 1.749063 CTAGATGTGTACACCAGCGGA 59.251 52.381 22.91 3.65 0.00 5.54
5441 5493 1.802880 GCTAGATGTGTACACCAGCGG 60.803 57.143 22.91 11.37 0.00 5.52
5442 5494 1.560923 GCTAGATGTGTACACCAGCG 58.439 55.000 22.91 8.92 0.00 5.18
5443 5495 1.802880 CGGCTAGATGTGTACACCAGC 60.803 57.143 22.91 22.03 0.00 4.85
5444 5496 1.802880 GCGGCTAGATGTGTACACCAG 60.803 57.143 22.91 14.74 0.00 4.00
5445 5497 0.174845 GCGGCTAGATGTGTACACCA 59.825 55.000 22.91 11.55 0.00 4.17
5446 5498 0.529992 GGCGGCTAGATGTGTACACC 60.530 60.000 22.91 8.77 0.00 4.16
5447 5499 0.174845 TGGCGGCTAGATGTGTACAC 59.825 55.000 19.36 19.36 0.00 2.90
5448 5500 1.119684 ATGGCGGCTAGATGTGTACA 58.880 50.000 11.43 0.00 0.00 2.90
5449 5501 1.502231 CATGGCGGCTAGATGTGTAC 58.498 55.000 11.43 0.00 0.00 2.90
5450 5502 0.392706 CCATGGCGGCTAGATGTGTA 59.607 55.000 11.43 0.00 0.00 2.90
5451 5503 1.146930 CCATGGCGGCTAGATGTGT 59.853 57.895 11.43 0.00 0.00 3.72
5452 5504 0.035881 ATCCATGGCGGCTAGATGTG 59.964 55.000 11.43 0.71 33.14 3.21
5453 5505 0.035881 CATCCATGGCGGCTAGATGT 59.964 55.000 20.44 0.00 31.71 3.06
5454 5506 0.322648 TCATCCATGGCGGCTAGATG 59.677 55.000 21.79 21.79 36.50 2.90
5455 5507 0.612229 CTCATCCATGGCGGCTAGAT 59.388 55.000 11.43 6.83 33.14 1.98
5456 5508 2.052779 CTCATCCATGGCGGCTAGA 58.947 57.895 11.43 4.47 33.14 2.43
5457 5509 1.670406 GCTCATCCATGGCGGCTAG 60.670 63.158 11.43 1.99 33.14 3.42
5458 5510 2.427320 GCTCATCCATGGCGGCTA 59.573 61.111 11.43 0.00 33.14 3.93
5459 5511 4.923942 CGCTCATCCATGGCGGCT 62.924 66.667 11.43 0.00 40.91 5.52
5460 5512 4.916293 TCGCTCATCCATGGCGGC 62.916 66.667 6.96 0.00 43.06 6.53
5461 5513 2.664185 CTCGCTCATCCATGGCGG 60.664 66.667 6.96 0.89 43.06 6.13
5462 5514 2.664185 CCTCGCTCATCCATGGCG 60.664 66.667 6.96 6.94 43.69 5.69
5463 5515 2.976903 GCCTCGCTCATCCATGGC 60.977 66.667 6.96 0.00 0.00 4.40
5464 5516 1.890979 GTGCCTCGCTCATCCATGG 60.891 63.158 4.97 4.97 0.00 3.66
5465 5517 1.890979 GGTGCCTCGCTCATCCATG 60.891 63.158 0.00 0.00 0.00 3.66
5466 5518 2.507944 GGTGCCTCGCTCATCCAT 59.492 61.111 0.00 0.00 0.00 3.41
5467 5519 3.785859 GGGTGCCTCGCTCATCCA 61.786 66.667 0.00 0.00 34.86 3.41
5468 5520 3.746949 CTGGGTGCCTCGCTCATCC 62.747 68.421 0.00 0.00 35.30 3.51
5469 5521 2.202987 CTGGGTGCCTCGCTCATC 60.203 66.667 0.00 0.00 0.00 2.92
5470 5522 2.685017 TCTGGGTGCCTCGCTCAT 60.685 61.111 0.00 0.00 0.00 2.90
5471 5523 3.695606 GTCTGGGTGCCTCGCTCA 61.696 66.667 0.00 0.00 0.00 4.26
5472 5524 3.363844 GAGTCTGGGTGCCTCGCTC 62.364 68.421 0.00 0.00 0.00 5.03
5473 5525 3.386237 GAGTCTGGGTGCCTCGCT 61.386 66.667 0.00 0.00 0.00 4.93
5474 5526 4.803426 CGAGTCTGGGTGCCTCGC 62.803 72.222 0.00 0.00 41.21 5.03
5476 5528 1.216710 CTTCGAGTCTGGGTGCCTC 59.783 63.158 0.00 0.00 0.00 4.70
5477 5529 2.948720 GCTTCGAGTCTGGGTGCCT 61.949 63.158 0.00 0.00 0.00 4.75
5478 5530 2.435059 GCTTCGAGTCTGGGTGCC 60.435 66.667 0.00 0.00 0.00 5.01
5479 5531 2.029844 GTGCTTCGAGTCTGGGTGC 61.030 63.158 0.00 0.00 0.00 5.01
5480 5532 1.374758 GGTGCTTCGAGTCTGGGTG 60.375 63.158 0.00 0.00 0.00 4.61
5481 5533 1.837051 TGGTGCTTCGAGTCTGGGT 60.837 57.895 0.00 0.00 0.00 4.51
5482 5534 1.374758 GTGGTGCTTCGAGTCTGGG 60.375 63.158 0.00 0.00 0.00 4.45
5483 5535 1.374758 GGTGGTGCTTCGAGTCTGG 60.375 63.158 0.00 0.00 0.00 3.86
5484 5536 1.734477 CGGTGGTGCTTCGAGTCTG 60.734 63.158 0.00 0.00 0.00 3.51
5485 5537 2.651361 CGGTGGTGCTTCGAGTCT 59.349 61.111 0.00 0.00 0.00 3.24
5486 5538 2.432628 CCGGTGGTGCTTCGAGTC 60.433 66.667 0.00 0.00 0.00 3.36
5487 5539 4.003788 CCCGGTGGTGCTTCGAGT 62.004 66.667 0.00 0.00 0.00 4.18
5491 5543 3.365265 CAAGCCCGGTGGTGCTTC 61.365 66.667 12.12 0.00 45.59 3.86
5532 5584 4.974721 AGCAACCGGTGGCAAGGG 62.975 66.667 34.91 7.52 0.00 3.95
5533 5585 3.673484 CAGCAACCGGTGGCAAGG 61.673 66.667 34.91 20.00 36.97 3.61
5534 5586 4.347453 GCAGCAACCGGTGGCAAG 62.347 66.667 34.91 26.38 41.09 4.01
5562 5614 1.734388 GTGAAACACAGGTGGCCACC 61.734 60.000 42.82 42.82 44.56 4.61
5563 5615 1.733526 GTGAAACACAGGTGGCCAC 59.266 57.895 28.57 28.57 36.32 5.01
5564 5616 1.821759 CGTGAAACACAGGTGGCCA 60.822 57.895 0.00 0.00 35.74 5.36
5565 5617 3.030652 CGTGAAACACAGGTGGCC 58.969 61.111 0.00 0.00 35.74 5.36
5566 5618 2.186826 AGCGTGAAACACAGGTGGC 61.187 57.895 4.24 0.00 35.74 5.01
5567 5619 1.648720 CAGCGTGAAACACAGGTGG 59.351 57.895 4.24 0.00 35.74 4.61
5568 5620 1.648720 CCAGCGTGAAACACAGGTG 59.351 57.895 13.89 13.89 35.74 4.00
5569 5621 2.186826 GCCAGCGTGAAACACAGGT 61.187 57.895 0.00 0.00 35.74 4.00
5570 5622 1.845809 GAGCCAGCGTGAAACACAGG 61.846 60.000 0.00 0.00 35.74 4.00
5571 5623 1.571460 GAGCCAGCGTGAAACACAG 59.429 57.895 0.00 0.00 35.74 3.66
5572 5624 2.243957 CGAGCCAGCGTGAAACACA 61.244 57.895 0.00 0.00 35.74 3.72
5573 5625 2.551270 CGAGCCAGCGTGAAACAC 59.449 61.111 0.00 0.00 35.74 3.32
5574 5626 2.664851 CCGAGCCAGCGTGAAACA 60.665 61.111 0.00 0.00 35.74 2.83
5575 5627 4.090057 GCCGAGCCAGCGTGAAAC 62.090 66.667 0.00 0.00 0.00 2.78
5587 5639 3.634072 GCTACTGCATGCGCCGAG 61.634 66.667 14.09 7.23 39.41 4.63
5593 5645 2.099062 GCACACGCTACTGCATGC 59.901 61.111 11.82 11.82 35.58 4.06
5594 5646 2.396861 CGCACACGCTACTGCATG 59.603 61.111 0.00 0.00 38.47 4.06
5631 5683 3.554692 GCGGAGTTGCGACCATCG 61.555 66.667 0.00 3.81 43.89 3.84
5632 5684 2.125512 AGCGGAGTTGCGACCATC 60.126 61.111 0.00 0.00 40.67 3.51
5633 5685 2.434884 CAGCGGAGTTGCGACCAT 60.435 61.111 0.00 0.00 40.67 3.55
5670 5722 2.582498 CGTCCGGTGATCTTCGCC 60.582 66.667 0.00 0.00 43.41 5.54
5671 5723 3.255379 GCGTCCGGTGATCTTCGC 61.255 66.667 0.00 4.48 37.17 4.70
5672 5724 2.949678 CGCGTCCGGTGATCTTCG 60.950 66.667 0.00 0.00 0.00 3.79
5673 5725 3.255379 GCGCGTCCGGTGATCTTC 61.255 66.667 8.43 0.00 34.32 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.