Multiple sequence alignment - TraesCS1D01G262100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G262100 chr1D 100.000 4420 0 0 1 4420 356077218 356072799 0.000000e+00 8163.0
1 TraesCS1D01G262100 chr1D 96.825 63 2 0 2020 2082 156274416 156274478 6.050000e-19 106.0
2 TraesCS1D01G262100 chr1D 96.825 63 2 0 2020 2082 191061173 191061235 6.050000e-19 106.0
3 TraesCS1D01G262100 chr1D 96.825 63 2 0 2020 2082 259948451 259948513 6.050000e-19 106.0
4 TraesCS1D01G262100 chr1B 92.818 2033 104 21 1 2021 478601562 478599560 0.000000e+00 2907.0
5 TraesCS1D01G262100 chr1B 91.063 1242 69 19 2456 3668 478599561 478598333 0.000000e+00 1640.0
6 TraesCS1D01G262100 chr1B 91.244 1085 62 21 1 1078 478611904 478610846 0.000000e+00 1447.0
7 TraesCS1D01G262100 chr1B 84.433 758 99 14 3669 4420 478598129 478597385 0.000000e+00 728.0
8 TraesCS1D01G262100 chr1B 96.970 33 1 0 1783 1815 478599739 478599707 6.180000e-04 56.5
9 TraesCS1D01G262100 chr1A 94.059 1414 72 6 2549 3950 456656300 456654887 0.000000e+00 2135.0
10 TraesCS1D01G262100 chr1A 90.400 1625 80 35 412 2021 456657922 456656359 0.000000e+00 2067.0
11 TraesCS1D01G262100 chr1A 93.086 405 26 2 7 411 456658356 456657954 3.810000e-165 592.0
12 TraesCS1D01G262100 chr1A 74.537 864 181 27 3493 4339 571641355 571640514 1.520000e-89 340.0
13 TraesCS1D01G262100 chr1A 81.879 149 19 6 3495 3640 416548794 416548651 7.770000e-23 119.0
14 TraesCS1D01G262100 chr1A 96.825 63 2 0 2020 2082 506154729 506154667 6.050000e-19 106.0
15 TraesCS1D01G262100 chr1A 96.970 33 1 0 1783 1815 456656534 456656502 6.180000e-04 56.5
16 TraesCS1D01G262100 chr5D 81.983 938 146 13 3472 4401 515833406 515832484 0.000000e+00 774.0
17 TraesCS1D01G262100 chr5D 98.233 283 5 0 2082 2364 87177909 87178191 3.070000e-136 496.0
18 TraesCS1D01G262100 chr5D 82.913 357 54 7 4068 4420 255472353 255472706 9.230000e-82 315.0
19 TraesCS1D01G262100 chr5D 95.455 66 3 0 2017 2082 138394219 138394284 6.050000e-19 106.0
20 TraesCS1D01G262100 chr2D 81.750 937 150 13 3488 4420 564917299 564918218 0.000000e+00 763.0
21 TraesCS1D01G262100 chr2D 98.621 290 4 0 2075 2364 642480539 642480828 8.480000e-142 514.0
22 TraesCS1D01G262100 chr2D 97.251 291 8 0 2074 2364 306547611 306547901 1.100000e-135 494.0
23 TraesCS1D01G262100 chr2D 96.516 287 9 1 2079 2364 632622324 632622610 1.440000e-129 473.0
24 TraesCS1D01G262100 chr2D 81.338 284 48 5 3495 3776 2044144 2043864 4.450000e-55 226.0
25 TraesCS1D01G262100 chr2D 77.682 233 48 3 4189 4420 2043773 2043544 5.960000e-29 139.0
26 TraesCS1D01G262100 chr2D 95.833 72 3 0 2372 2443 165779993 165779922 2.790000e-22 117.0
27 TraesCS1D01G262100 chr5B 79.933 902 156 12 3526 4420 286862813 286861930 1.340000e-179 640.0
28 TraesCS1D01G262100 chr5B 95.789 285 11 1 2082 2365 137291175 137291459 4.030000e-125 459.0
29 TraesCS1D01G262100 chr6A 79.872 939 132 33 3497 4416 322062432 322063332 6.240000e-178 634.0
30 TraesCS1D01G262100 chr6A 94.937 158 8 0 1658 1815 555421279 555421122 9.490000e-62 248.0
31 TraesCS1D01G262100 chr6A 95.161 62 3 0 1848 1909 555421154 555421093 1.010000e-16 99.0
32 TraesCS1D01G262100 chr6D 98.940 283 3 0 2082 2364 50572431 50572149 1.420000e-139 507.0
33 TraesCS1D01G262100 chr6D 84.444 315 46 3 4049 4361 347406488 347406801 1.540000e-79 307.0
34 TraesCS1D01G262100 chr6D 84.177 158 22 3 3495 3650 402115334 402115178 2.750000e-32 150.0
35 TraesCS1D01G262100 chr6D 93.590 78 5 0 2366 2443 311580596 311580673 2.790000e-22 117.0
36 TraesCS1D01G262100 chr4D 99.234 261 2 0 2082 2342 334119455 334119715 5.170000e-129 472.0
37 TraesCS1D01G262100 chr4B 95.760 283 12 0 2083 2365 108956787 108957069 1.450000e-124 457.0
38 TraesCS1D01G262100 chr4B 93.590 78 5 0 2366 2443 172104980 172105057 2.790000e-22 117.0
39 TraesCS1D01G262100 chr7B 96.043 278 11 0 2088 2365 162330505 162330782 1.870000e-123 453.0
40 TraesCS1D01G262100 chr7B 90.526 95 6 2 2366 2459 413108877 413108969 6.000000e-24 122.0
41 TraesCS1D01G262100 chr7B 93.421 76 5 0 2372 2447 354600479 354600404 3.610000e-21 113.0
42 TraesCS1D01G262100 chr7B 93.421 76 5 0 2372 2447 354831659 354831584 3.610000e-21 113.0
43 TraesCS1D01G262100 chr7B 96.825 63 2 0 2020 2082 98430992 98431054 6.050000e-19 106.0
44 TraesCS1D01G262100 chr2B 73.433 941 185 47 3477 4391 34451439 34452340 4.320000e-75 292.0
45 TraesCS1D01G262100 chr2B 92.683 82 6 0 2366 2447 311975058 311975139 7.770000e-23 119.0
46 TraesCS1D01G262100 chr2A 83.451 284 45 2 4113 4395 502838306 502838588 3.390000e-66 263.0
47 TraesCS1D01G262100 chr2A 92.857 70 5 0 2020 2089 280996617 280996548 7.820000e-18 102.0
48 TraesCS1D01G262100 chr3B 82.292 192 31 3 3495 3685 66415172 66414983 3.540000e-36 163.0
49 TraesCS1D01G262100 chr3B 93.590 78 5 0 2366 2443 80158671 80158748 2.790000e-22 117.0
50 TraesCS1D01G262100 chr7D 93.590 78 5 0 2366 2443 306288060 306288137 2.790000e-22 117.0
51 TraesCS1D01G262100 chr7D 95.588 68 3 0 2015 2082 298297801 298297734 4.670000e-20 110.0
52 TraesCS1D01G262100 chr3D 96.825 63 2 0 2020 2082 474311701 474311639 6.050000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G262100 chr1D 356072799 356077218 4419 True 8163.000 8163 100.00000 1 4420 1 chr1D.!!$R1 4419
1 TraesCS1D01G262100 chr1B 478610846 478611904 1058 True 1447.000 1447 91.24400 1 1078 1 chr1B.!!$R1 1077
2 TraesCS1D01G262100 chr1B 478597385 478601562 4177 True 1332.875 2907 91.32100 1 4420 4 chr1B.!!$R2 4419
3 TraesCS1D01G262100 chr1A 456654887 456658356 3469 True 1212.625 2135 93.62875 7 3950 4 chr1A.!!$R4 3943
4 TraesCS1D01G262100 chr1A 571640514 571641355 841 True 340.000 340 74.53700 3493 4339 1 chr1A.!!$R3 846
5 TraesCS1D01G262100 chr5D 515832484 515833406 922 True 774.000 774 81.98300 3472 4401 1 chr5D.!!$R1 929
6 TraesCS1D01G262100 chr2D 564917299 564918218 919 False 763.000 763 81.75000 3488 4420 1 chr2D.!!$F2 932
7 TraesCS1D01G262100 chr5B 286861930 286862813 883 True 640.000 640 79.93300 3526 4420 1 chr5B.!!$R1 894
8 TraesCS1D01G262100 chr6A 322062432 322063332 900 False 634.000 634 79.87200 3497 4416 1 chr6A.!!$F1 919
9 TraesCS1D01G262100 chr2B 34451439 34452340 901 False 292.000 292 73.43300 3477 4391 1 chr2B.!!$F1 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1008 0.094730 GATCGACGACGCCAAAAAGG 59.905 55.0 0.0 0.0 39.58 3.11 F
2206 2266 0.106708 AAGCGAAGGAGCACAACAGA 59.893 50.0 0.0 0.0 40.15 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 2294 0.098376 CGGCGCGTAGTCTCTAGTTT 59.902 55.0 8.43 0.0 0.0 2.66 R
3558 3646 0.039798 ACGTACGATGTTGCACGAGT 60.040 50.0 24.41 0.0 37.8 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 4.523943 TGATAACCCATGGATTAGCATTGC 59.476 41.667 13.01 0.00 0.00 3.56
196 197 4.836455 TGCTTTTTGATGATATTCGCTCG 58.164 39.130 0.00 0.00 0.00 5.03
337 339 7.391148 TTTCTGTCTAAATTTCATAGCCCAC 57.609 36.000 0.00 0.00 0.00 4.61
418 453 7.467325 AATTTAAGCTTAGATAACCCTCCCT 57.533 36.000 9.74 0.00 0.00 4.20
419 454 6.496144 TTTAAGCTTAGATAACCCTCCCTC 57.504 41.667 6.24 0.00 0.00 4.30
571 607 9.814899 ACAGTGAAACAAAAATATTGACATTCA 57.185 25.926 0.00 0.00 41.43 2.57
625 661 4.561735 TTAGTTCCCGCAAAAGTCAAAG 57.438 40.909 0.00 0.00 0.00 2.77
636 672 6.142320 CCGCAAAAGTCAAAGTTCATAAACTC 59.858 38.462 0.00 0.00 45.07 3.01
735 775 9.722184 ACACTCCATCTCATGATAAATCTAATG 57.278 33.333 0.00 0.00 0.00 1.90
736 776 9.163899 CACTCCATCTCATGATAAATCTAATGG 57.836 37.037 0.00 0.79 33.92 3.16
763 803 8.594881 ATTGGTTTGATATTCTAGATGTCGAC 57.405 34.615 9.11 9.11 0.00 4.20
856 904 2.310052 AGTAAAGCAGAGCCCCAAGATT 59.690 45.455 0.00 0.00 0.00 2.40
894 942 4.940654 TGGATTTGTGATTTGCTATCGTGA 59.059 37.500 0.00 0.00 0.00 4.35
959 1007 0.246757 CGATCGACGACGCCAAAAAG 60.247 55.000 10.26 0.00 45.77 2.27
960 1008 0.094730 GATCGACGACGCCAAAAAGG 59.905 55.000 0.00 0.00 39.58 3.11
972 1020 3.382015 CCAAAAAGGCAAAAACACACG 57.618 42.857 0.00 0.00 0.00 4.49
990 1038 3.168528 AGACAACCGGTGGCCACT 61.169 61.111 33.91 14.62 34.75 4.00
1045 1094 4.699522 GCCCACCACCACCGAGTC 62.700 72.222 0.00 0.00 0.00 3.36
1046 1095 4.016706 CCCACCACCACCGAGTCC 62.017 72.222 0.00 0.00 0.00 3.85
1072 1121 0.955919 CCTTCACCTCCTTCGCAACC 60.956 60.000 0.00 0.00 0.00 3.77
1096 1145 2.167398 GAACTCACCTACCCTGCGCA 62.167 60.000 10.98 10.98 0.00 6.09
1204 1253 2.716017 CCCTGTCTCCAGCTCGTCC 61.716 68.421 0.00 0.00 37.38 4.79
1357 1406 2.202797 GCAAGAGCCGATCGAGCA 60.203 61.111 24.07 0.00 34.13 4.26
1358 1407 1.593750 GCAAGAGCCGATCGAGCAT 60.594 57.895 24.07 13.28 34.13 3.79
1385 1435 5.154932 CAGGCTCTACGGATATTTACTTCG 58.845 45.833 0.00 0.00 0.00 3.79
1407 1457 5.960683 TCGCGAATATTTTACCGAACATTTG 59.039 36.000 6.20 0.00 0.00 2.32
1517 1567 5.014123 TGGATTCTCTTACACCATGGAAACT 59.986 40.000 21.47 0.00 0.00 2.66
1551 1601 2.169978 AGTCCTCGGTTTGGCTAATACC 59.830 50.000 4.73 4.73 0.00 2.73
1567 1617 6.127101 GCTAATACCCCCTCTGTAAACAAAT 58.873 40.000 0.00 0.00 0.00 2.32
1568 1618 6.039382 GCTAATACCCCCTCTGTAAACAAATG 59.961 42.308 0.00 0.00 0.00 2.32
1650 1703 7.276658 TGGCGTGTTATTAAATTGCTTAATTGG 59.723 33.333 0.00 0.00 40.15 3.16
1779 1832 2.009774 CCGCCTCAGGTTAGACAATTG 58.990 52.381 3.24 3.24 0.00 2.32
1810 1863 6.201044 GTCGAATATGGAATGGTAACTCTGTG 59.799 42.308 0.00 0.00 37.61 3.66
1820 1873 2.289694 GGTAACTCTGTGGCTGTGTCAT 60.290 50.000 0.00 0.00 0.00 3.06
1829 1882 0.677731 GGCTGTGTCATTGCTGCCTA 60.678 55.000 0.00 0.00 43.48 3.93
1851 1904 1.802636 CCACATCCCGTGTTCATGC 59.197 57.895 0.00 0.00 44.78 4.06
1871 1924 4.787551 TGCCGAATATGGAATGGTAACTT 58.212 39.130 0.00 0.00 37.61 2.66
1916 1969 7.252708 TGATTTTGCAGCTGACAATTATACAG 58.747 34.615 20.43 0.00 35.14 2.74
1986 2045 7.734942 TGAATTCTTTAGATGGCAACCTTTTT 58.265 30.769 7.05 0.00 0.00 1.94
1987 2046 7.656948 TGAATTCTTTAGATGGCAACCTTTTTG 59.343 33.333 7.05 0.00 0.00 2.44
2019 2079 3.149981 GGCAGGTGTTAGCTTCTCTTTT 58.850 45.455 0.00 0.00 0.00 2.27
2020 2080 4.041691 AGGCAGGTGTTAGCTTCTCTTTTA 59.958 41.667 0.00 0.00 0.00 1.52
2021 2081 4.154375 GGCAGGTGTTAGCTTCTCTTTTAC 59.846 45.833 0.00 0.00 0.00 2.01
2022 2082 4.998033 GCAGGTGTTAGCTTCTCTTTTACT 59.002 41.667 0.00 0.00 0.00 2.24
2023 2083 6.164176 GCAGGTGTTAGCTTCTCTTTTACTA 58.836 40.000 0.00 0.00 0.00 1.82
2024 2084 6.091034 GCAGGTGTTAGCTTCTCTTTTACTAC 59.909 42.308 0.00 0.00 0.00 2.73
2025 2085 6.590677 CAGGTGTTAGCTTCTCTTTTACTACC 59.409 42.308 0.00 0.00 0.00 3.18
2026 2086 6.497606 AGGTGTTAGCTTCTCTTTTACTACCT 59.502 38.462 0.00 0.00 0.00 3.08
2027 2087 6.812656 GGTGTTAGCTTCTCTTTTACTACCTC 59.187 42.308 0.00 0.00 0.00 3.85
2028 2088 7.309928 GGTGTTAGCTTCTCTTTTACTACCTCT 60.310 40.741 0.00 0.00 0.00 3.69
2029 2089 7.542824 GTGTTAGCTTCTCTTTTACTACCTCTG 59.457 40.741 0.00 0.00 0.00 3.35
2030 2090 7.232941 TGTTAGCTTCTCTTTTACTACCTCTGT 59.767 37.037 0.00 0.00 0.00 3.41
2031 2091 6.673839 AGCTTCTCTTTTACTACCTCTGTT 57.326 37.500 0.00 0.00 0.00 3.16
2032 2092 6.693466 AGCTTCTCTTTTACTACCTCTGTTC 58.307 40.000 0.00 0.00 0.00 3.18
2033 2093 5.870433 GCTTCTCTTTTACTACCTCTGTTCC 59.130 44.000 0.00 0.00 0.00 3.62
2034 2094 6.295405 GCTTCTCTTTTACTACCTCTGTTCCT 60.295 42.308 0.00 0.00 0.00 3.36
2035 2095 7.093858 GCTTCTCTTTTACTACCTCTGTTCCTA 60.094 40.741 0.00 0.00 0.00 2.94
2036 2096 8.716674 TTCTCTTTTACTACCTCTGTTCCTAA 57.283 34.615 0.00 0.00 0.00 2.69
2037 2097 8.716674 TCTCTTTTACTACCTCTGTTCCTAAA 57.283 34.615 0.00 0.00 0.00 1.85
2038 2098 9.322769 TCTCTTTTACTACCTCTGTTCCTAAAT 57.677 33.333 0.00 0.00 0.00 1.40
2046 2106 9.884814 ACTACCTCTGTTCCTAAATATATGTCT 57.115 33.333 0.00 0.00 0.00 3.41
2069 2129 7.406916 TCTCTATAGAGATTCCACTATGGACC 58.593 42.308 25.54 0.00 45.26 4.46
2070 2130 7.018650 TCTCTATAGAGATTCCACTATGGACCA 59.981 40.741 25.54 0.00 45.26 4.02
2071 2131 7.122055 CTCTATAGAGATTCCACTATGGACCAC 59.878 44.444 23.14 0.00 44.85 4.16
2078 2138 3.989056 TCCACTATGGACCACATACAGA 58.011 45.455 0.00 0.00 42.67 3.41
2079 2139 4.556697 TCCACTATGGACCACATACAGAT 58.443 43.478 0.00 0.00 42.67 2.90
2080 2140 4.344968 TCCACTATGGACCACATACAGATG 59.655 45.833 0.00 0.00 42.67 2.90
2081 2141 4.101585 CCACTATGGACCACATACAGATGT 59.898 45.833 0.00 0.00 43.21 3.06
2082 2142 5.396772 CCACTATGGACCACATACAGATGTT 60.397 44.000 0.00 0.00 40.99 2.71
2083 2143 6.115446 CACTATGGACCACATACAGATGTTT 58.885 40.000 0.00 0.00 44.18 2.83
2084 2144 6.599244 CACTATGGACCACATACAGATGTTTT 59.401 38.462 0.00 0.00 44.18 2.43
2085 2145 7.121168 CACTATGGACCACATACAGATGTTTTT 59.879 37.037 0.00 0.00 44.18 1.94
2116 2176 3.951979 GCAAGCTGCGTATCTTTGTAT 57.048 42.857 0.00 0.00 31.71 2.29
2117 2177 4.278678 GCAAGCTGCGTATCTTTGTATT 57.721 40.909 0.00 0.00 31.71 1.89
2118 2178 4.031028 GCAAGCTGCGTATCTTTGTATTG 58.969 43.478 0.00 0.00 31.71 1.90
2119 2179 4.201812 GCAAGCTGCGTATCTTTGTATTGA 60.202 41.667 0.00 0.00 31.71 2.57
2120 2180 5.504665 GCAAGCTGCGTATCTTTGTATTGAT 60.505 40.000 0.00 0.00 31.71 2.57
2121 2181 6.292865 GCAAGCTGCGTATCTTTGTATTGATA 60.293 38.462 0.00 0.00 31.71 2.15
2122 2182 7.286508 CAAGCTGCGTATCTTTGTATTGATAG 58.713 38.462 0.00 0.00 0.00 2.08
2123 2183 6.749139 AGCTGCGTATCTTTGTATTGATAGA 58.251 36.000 0.00 0.00 0.00 1.98
2124 2184 7.210174 AGCTGCGTATCTTTGTATTGATAGAA 58.790 34.615 0.00 0.00 0.00 2.10
2125 2185 7.383572 AGCTGCGTATCTTTGTATTGATAGAAG 59.616 37.037 0.00 0.00 0.00 2.85
2126 2186 7.359598 GCTGCGTATCTTTGTATTGATAGAAGG 60.360 40.741 0.00 0.00 0.00 3.46
2127 2187 7.722363 TGCGTATCTTTGTATTGATAGAAGGA 58.278 34.615 0.00 0.00 0.00 3.36
2128 2188 7.867909 TGCGTATCTTTGTATTGATAGAAGGAG 59.132 37.037 0.66 0.00 28.05 3.69
2129 2189 8.082852 GCGTATCTTTGTATTGATAGAAGGAGA 58.917 37.037 0.66 0.00 28.05 3.71
2130 2190 9.619316 CGTATCTTTGTATTGATAGAAGGAGAG 57.381 37.037 0.66 0.00 28.05 3.20
2134 2194 9.475620 TCTTTGTATTGATAGAAGGAGAGTACA 57.524 33.333 0.00 0.00 0.00 2.90
2137 2197 7.717568 TGTATTGATAGAAGGAGAGTACAAGC 58.282 38.462 0.00 0.00 0.00 4.01
2138 2198 6.798427 ATTGATAGAAGGAGAGTACAAGCA 57.202 37.500 0.00 0.00 0.00 3.91
2139 2199 6.798427 TTGATAGAAGGAGAGTACAAGCAT 57.202 37.500 0.00 0.00 0.00 3.79
2140 2200 6.154203 TGATAGAAGGAGAGTACAAGCATG 57.846 41.667 0.00 0.00 0.00 4.06
2141 2201 3.902881 AGAAGGAGAGTACAAGCATGG 57.097 47.619 0.00 0.00 0.00 3.66
2142 2202 2.503356 AGAAGGAGAGTACAAGCATGGG 59.497 50.000 0.00 0.00 0.00 4.00
2143 2203 2.254152 AGGAGAGTACAAGCATGGGA 57.746 50.000 0.00 0.00 0.00 4.37
2144 2204 2.769209 AGGAGAGTACAAGCATGGGAT 58.231 47.619 0.00 0.00 0.00 3.85
2145 2205 3.118531 AGGAGAGTACAAGCATGGGATT 58.881 45.455 0.00 0.00 0.00 3.01
2146 2206 4.298626 AGGAGAGTACAAGCATGGGATTA 58.701 43.478 0.00 0.00 0.00 1.75
2147 2207 4.101741 AGGAGAGTACAAGCATGGGATTAC 59.898 45.833 0.00 0.00 0.00 1.89
2148 2208 4.141711 GGAGAGTACAAGCATGGGATTACA 60.142 45.833 0.00 0.00 0.00 2.41
2149 2209 5.428253 GAGAGTACAAGCATGGGATTACAA 58.572 41.667 0.00 0.00 0.00 2.41
2150 2210 5.186198 AGAGTACAAGCATGGGATTACAAC 58.814 41.667 0.00 0.00 0.00 3.32
2151 2211 3.938963 AGTACAAGCATGGGATTACAACG 59.061 43.478 0.00 0.00 0.00 4.10
2152 2212 1.472480 ACAAGCATGGGATTACAACGC 59.528 47.619 0.00 0.00 0.00 4.84
2153 2213 1.745087 CAAGCATGGGATTACAACGCT 59.255 47.619 0.00 0.00 35.48 5.07
2154 2214 2.128771 AGCATGGGATTACAACGCTT 57.871 45.000 0.00 0.00 31.53 4.68
2155 2215 3.275617 AGCATGGGATTACAACGCTTA 57.724 42.857 0.00 0.00 31.53 3.09
2156 2216 2.943033 AGCATGGGATTACAACGCTTAC 59.057 45.455 0.00 0.00 31.53 2.34
2157 2217 2.680841 GCATGGGATTACAACGCTTACA 59.319 45.455 0.00 0.00 0.00 2.41
2158 2218 3.127895 GCATGGGATTACAACGCTTACAA 59.872 43.478 0.00 0.00 0.00 2.41
2159 2219 4.202010 GCATGGGATTACAACGCTTACAAT 60.202 41.667 0.00 0.00 0.00 2.71
2160 2220 4.955925 TGGGATTACAACGCTTACAATG 57.044 40.909 0.00 0.00 0.00 2.82
2161 2221 3.127895 TGGGATTACAACGCTTACAATGC 59.872 43.478 0.00 0.00 0.00 3.56
2162 2222 3.488553 GGGATTACAACGCTTACAATGCC 60.489 47.826 0.00 0.00 31.28 4.40
2163 2223 3.127895 GGATTACAACGCTTACAATGCCA 59.872 43.478 0.00 0.00 0.00 4.92
2164 2224 4.202010 GGATTACAACGCTTACAATGCCAT 60.202 41.667 0.00 0.00 0.00 4.40
2165 2225 2.634982 ACAACGCTTACAATGCCATG 57.365 45.000 0.00 0.00 0.00 3.66
2166 2226 1.885887 ACAACGCTTACAATGCCATGT 59.114 42.857 0.00 0.00 37.32 3.21
2167 2227 2.252747 CAACGCTTACAATGCCATGTG 58.747 47.619 2.00 0.00 34.75 3.21
2168 2228 0.171007 ACGCTTACAATGCCATGTGC 59.829 50.000 2.00 0.00 41.77 4.57
2169 2229 0.862701 CGCTTACAATGCCATGTGCG 60.863 55.000 8.54 8.54 45.60 5.34
2170 2230 1.141591 GCTTACAATGCCATGTGCGC 61.142 55.000 0.00 0.00 45.60 6.09
2171 2231 0.170784 CTTACAATGCCATGTGCGCA 59.829 50.000 5.66 5.66 45.60 6.09
2172 2232 0.109365 TTACAATGCCATGTGCGCAC 60.109 50.000 33.11 33.11 45.60 5.34
2173 2233 0.959867 TACAATGCCATGTGCGCACT 60.960 50.000 37.59 22.19 45.60 4.40
2174 2234 0.959867 ACAATGCCATGTGCGCACTA 60.960 50.000 37.59 25.26 45.60 2.74
2175 2235 0.248336 CAATGCCATGTGCGCACTAG 60.248 55.000 37.59 28.56 45.60 2.57
2176 2236 1.378882 AATGCCATGTGCGCACTAGG 61.379 55.000 37.59 35.12 45.60 3.02
2177 2237 3.880846 GCCATGTGCGCACTAGGC 61.881 66.667 40.10 40.10 41.76 3.93
2178 2238 2.436469 CCATGTGCGCACTAGGCA 60.436 61.111 37.59 20.46 45.17 4.75
2179 2239 1.820906 CCATGTGCGCACTAGGCAT 60.821 57.895 37.59 21.79 45.17 4.40
2180 2240 1.354155 CATGTGCGCACTAGGCATG 59.646 57.895 37.59 27.89 45.17 4.06
2181 2241 1.820906 ATGTGCGCACTAGGCATGG 60.821 57.895 37.59 0.00 45.17 3.66
2182 2242 2.436646 GTGCGCACTAGGCATGGT 60.437 61.111 32.55 0.00 45.17 3.55
2183 2243 2.436469 TGCGCACTAGGCATGGTG 60.436 61.111 5.66 10.80 45.17 4.17
2184 2244 2.125147 GCGCACTAGGCATGGTGA 60.125 61.111 19.55 0.00 45.17 4.02
2185 2245 1.745115 GCGCACTAGGCATGGTGAA 60.745 57.895 19.55 0.00 45.17 3.18
2186 2246 1.982073 GCGCACTAGGCATGGTGAAC 61.982 60.000 19.55 5.44 45.17 3.18
2187 2247 0.673333 CGCACTAGGCATGGTGAACA 60.673 55.000 19.55 0.00 45.17 3.18
2188 2248 1.533625 GCACTAGGCATGGTGAACAA 58.466 50.000 19.55 0.00 40.16 2.83
2189 2249 1.470098 GCACTAGGCATGGTGAACAAG 59.530 52.381 19.55 0.00 40.16 3.16
2190 2250 1.470098 CACTAGGCATGGTGAACAAGC 59.530 52.381 9.47 0.00 40.16 4.01
2191 2251 0.729116 CTAGGCATGGTGAACAAGCG 59.271 55.000 0.00 0.00 44.40 4.68
2192 2252 0.323302 TAGGCATGGTGAACAAGCGA 59.677 50.000 0.00 0.00 44.40 4.93
2193 2253 0.537143 AGGCATGGTGAACAAGCGAA 60.537 50.000 0.00 0.00 44.40 4.70
2194 2254 0.109597 GGCATGGTGAACAAGCGAAG 60.110 55.000 0.00 0.00 44.40 3.79
2195 2255 0.109597 GCATGGTGAACAAGCGAAGG 60.110 55.000 0.00 0.00 33.76 3.46
2196 2256 1.522668 CATGGTGAACAAGCGAAGGA 58.477 50.000 0.00 0.00 0.00 3.36
2197 2257 1.466167 CATGGTGAACAAGCGAAGGAG 59.534 52.381 0.00 0.00 0.00 3.69
2198 2258 0.884704 TGGTGAACAAGCGAAGGAGC 60.885 55.000 0.00 0.00 37.41 4.70
2199 2259 0.884704 GGTGAACAAGCGAAGGAGCA 60.885 55.000 0.00 0.00 40.15 4.26
2200 2260 0.235926 GTGAACAAGCGAAGGAGCAC 59.764 55.000 0.00 0.00 40.15 4.40
2201 2261 0.179059 TGAACAAGCGAAGGAGCACA 60.179 50.000 0.00 0.00 40.15 4.57
2202 2262 0.944386 GAACAAGCGAAGGAGCACAA 59.056 50.000 0.00 0.00 40.15 3.33
2203 2263 0.663153 AACAAGCGAAGGAGCACAAC 59.337 50.000 0.00 0.00 40.15 3.32
2204 2264 0.463654 ACAAGCGAAGGAGCACAACA 60.464 50.000 0.00 0.00 40.15 3.33
2205 2265 0.236711 CAAGCGAAGGAGCACAACAG 59.763 55.000 0.00 0.00 40.15 3.16
2206 2266 0.106708 AAGCGAAGGAGCACAACAGA 59.893 50.000 0.00 0.00 40.15 3.41
2207 2267 0.322975 AGCGAAGGAGCACAACAGAT 59.677 50.000 0.00 0.00 40.15 2.90
2208 2268 1.550524 AGCGAAGGAGCACAACAGATA 59.449 47.619 0.00 0.00 40.15 1.98
2209 2269 1.929836 GCGAAGGAGCACAACAGATAG 59.070 52.381 0.00 0.00 37.05 2.08
2210 2270 2.544685 CGAAGGAGCACAACAGATAGG 58.455 52.381 0.00 0.00 0.00 2.57
2211 2271 2.739932 CGAAGGAGCACAACAGATAGGG 60.740 54.545 0.00 0.00 0.00 3.53
2212 2272 1.207791 AGGAGCACAACAGATAGGGG 58.792 55.000 0.00 0.00 0.00 4.79
2213 2273 0.912486 GGAGCACAACAGATAGGGGT 59.088 55.000 0.00 0.00 0.00 4.95
2214 2274 1.407437 GGAGCACAACAGATAGGGGTG 60.407 57.143 0.00 0.00 0.00 4.61
2215 2275 1.279271 GAGCACAACAGATAGGGGTGT 59.721 52.381 0.00 0.00 0.00 4.16
2216 2276 1.003580 AGCACAACAGATAGGGGTGTG 59.996 52.381 6.23 6.23 0.00 3.82
2217 2277 1.453155 CACAACAGATAGGGGTGTGC 58.547 55.000 0.00 0.00 0.00 4.57
2218 2278 1.003580 CACAACAGATAGGGGTGTGCT 59.996 52.381 0.00 0.00 0.00 4.40
2219 2279 1.279271 ACAACAGATAGGGGTGTGCTC 59.721 52.381 0.00 0.00 0.00 4.26
2220 2280 1.278985 CAACAGATAGGGGTGTGCTCA 59.721 52.381 0.00 0.00 0.00 4.26
2221 2281 1.198713 ACAGATAGGGGTGTGCTCAG 58.801 55.000 0.00 0.00 0.00 3.35
2222 2282 0.179062 CAGATAGGGGTGTGCTCAGC 60.179 60.000 9.41 9.41 40.82 4.26
2241 2301 1.481871 CCCCACGGCTAGAAACTAGA 58.518 55.000 9.58 0.00 0.00 2.43
2242 2302 1.409427 CCCCACGGCTAGAAACTAGAG 59.591 57.143 9.58 5.42 0.00 2.43
2243 2303 2.376109 CCCACGGCTAGAAACTAGAGA 58.624 52.381 9.58 0.00 0.00 3.10
2244 2304 2.099427 CCCACGGCTAGAAACTAGAGAC 59.901 54.545 9.58 0.00 0.00 3.36
2245 2305 3.018149 CCACGGCTAGAAACTAGAGACT 58.982 50.000 9.58 0.00 0.00 3.24
2246 2306 4.197750 CCACGGCTAGAAACTAGAGACTA 58.802 47.826 9.58 0.00 0.00 2.59
2247 2307 4.035441 CCACGGCTAGAAACTAGAGACTAC 59.965 50.000 9.58 0.00 0.00 2.73
2248 2308 3.870419 ACGGCTAGAAACTAGAGACTACG 59.130 47.826 9.58 1.06 0.00 3.51
2249 2309 3.303263 CGGCTAGAAACTAGAGACTACGC 60.303 52.174 9.58 3.20 0.00 4.42
2250 2310 3.303263 GGCTAGAAACTAGAGACTACGCG 60.303 52.174 3.53 3.53 0.00 6.01
2251 2311 2.828874 AGAAACTAGAGACTACGCGC 57.171 50.000 5.73 0.00 0.00 6.86
2252 2312 1.401199 AGAAACTAGAGACTACGCGCC 59.599 52.381 5.73 0.00 0.00 6.53
2253 2313 0.098376 AAACTAGAGACTACGCGCCG 59.902 55.000 5.73 0.00 0.00 6.46
2254 2314 1.712977 AACTAGAGACTACGCGCCGG 61.713 60.000 5.73 0.00 0.00 6.13
2255 2315 2.894565 CTAGAGACTACGCGCCGGG 61.895 68.421 5.73 0.00 0.00 5.73
2259 2319 3.289834 GACTACGCGCCGGGGATA 61.290 66.667 24.68 12.45 0.00 2.59
2260 2320 2.834505 ACTACGCGCCGGGGATAA 60.835 61.111 24.68 4.78 0.00 1.75
2261 2321 2.151049 GACTACGCGCCGGGGATAAT 62.151 60.000 24.68 3.01 0.00 1.28
2262 2322 1.736645 CTACGCGCCGGGGATAATG 60.737 63.158 24.68 8.07 0.00 1.90
2263 2323 2.430382 CTACGCGCCGGGGATAATGT 62.430 60.000 24.68 13.45 0.00 2.71
2264 2324 2.030490 TACGCGCCGGGGATAATGTT 62.030 55.000 24.68 0.00 0.00 2.71
2265 2325 2.184167 CGCGCCGGGGATAATGTTT 61.184 57.895 24.68 0.00 0.00 2.83
2266 2326 1.720694 CGCGCCGGGGATAATGTTTT 61.721 55.000 24.68 0.00 0.00 2.43
2267 2327 0.248866 GCGCCGGGGATAATGTTTTG 60.249 55.000 24.68 0.00 0.00 2.44
2268 2328 0.248866 CGCCGGGGATAATGTTTTGC 60.249 55.000 14.46 0.00 0.00 3.68
2269 2329 0.820871 GCCGGGGATAATGTTTTGCA 59.179 50.000 2.18 0.00 0.00 4.08
2270 2330 1.205893 GCCGGGGATAATGTTTTGCAA 59.794 47.619 2.18 0.00 0.00 4.08
2271 2331 2.158971 GCCGGGGATAATGTTTTGCAAT 60.159 45.455 2.18 0.00 0.00 3.56
2272 2332 3.716601 CCGGGGATAATGTTTTGCAATC 58.283 45.455 0.00 0.00 0.00 2.67
2273 2333 3.492482 CCGGGGATAATGTTTTGCAATCC 60.492 47.826 0.00 1.71 34.98 3.01
2274 2334 3.716601 GGGGATAATGTTTTGCAATCCG 58.283 45.455 0.00 0.00 36.03 4.18
2275 2335 3.492482 GGGGATAATGTTTTGCAATCCGG 60.492 47.826 0.00 0.00 36.03 5.14
2276 2336 3.132111 GGGATAATGTTTTGCAATCCGGT 59.868 43.478 0.00 0.00 36.03 5.28
2277 2337 4.339814 GGGATAATGTTTTGCAATCCGGTA 59.660 41.667 0.00 0.00 36.03 4.02
2278 2338 5.507315 GGGATAATGTTTTGCAATCCGGTAG 60.507 44.000 0.00 0.00 36.03 3.18
2279 2339 2.939460 ATGTTTTGCAATCCGGTAGC 57.061 45.000 0.00 4.85 0.00 3.58
2280 2340 0.519519 TGTTTTGCAATCCGGTAGCG 59.480 50.000 7.49 7.49 0.00 4.26
2281 2341 0.796870 GTTTTGCAATCCGGTAGCGC 60.797 55.000 9.24 0.00 0.00 5.92
2282 2342 1.928706 TTTTGCAATCCGGTAGCGCC 61.929 55.000 9.24 0.00 0.00 6.53
2283 2343 4.849310 TGCAATCCGGTAGCGCCC 62.849 66.667 9.24 0.00 0.00 6.13
2298 2358 3.488569 CCCGCCTTGGCCCATAGA 61.489 66.667 0.00 0.00 35.87 1.98
2299 2359 2.203209 CCGCCTTGGCCCATAGAC 60.203 66.667 0.00 0.00 0.00 2.59
2300 2360 2.588877 CGCCTTGGCCCATAGACG 60.589 66.667 0.00 0.00 0.00 4.18
2301 2361 2.902343 GCCTTGGCCCATAGACGC 60.902 66.667 0.00 0.00 0.00 5.19
2302 2362 2.588877 CCTTGGCCCATAGACGCG 60.589 66.667 3.53 3.53 0.00 6.01
2303 2363 3.272334 CTTGGCCCATAGACGCGC 61.272 66.667 5.73 0.00 0.00 6.86
2304 2364 4.849310 TTGGCCCATAGACGCGCC 62.849 66.667 5.73 0.00 41.99 6.53
2306 2366 4.971125 GGCCCATAGACGCGCCTC 62.971 72.222 5.73 0.00 38.41 4.70
2316 2376 3.257561 CGCGCCTCGTCCTTGATG 61.258 66.667 0.00 0.00 0.00 3.07
2317 2377 2.892425 GCGCCTCGTCCTTGATGG 60.892 66.667 0.00 0.00 37.10 3.51
2318 2378 2.579201 CGCCTCGTCCTTGATGGT 59.421 61.111 0.00 0.00 37.07 3.55
2319 2379 1.811266 CGCCTCGTCCTTGATGGTG 60.811 63.158 0.00 0.00 37.07 4.17
2320 2380 1.296715 GCCTCGTCCTTGATGGTGT 59.703 57.895 0.00 0.00 37.07 4.16
2321 2381 0.741221 GCCTCGTCCTTGATGGTGTC 60.741 60.000 0.00 0.00 37.07 3.67
2322 2382 0.608130 CCTCGTCCTTGATGGTGTCA 59.392 55.000 0.00 0.00 37.07 3.58
2323 2383 1.404717 CCTCGTCCTTGATGGTGTCAG 60.405 57.143 0.00 0.00 38.29 3.51
2324 2384 1.546029 CTCGTCCTTGATGGTGTCAGA 59.454 52.381 0.00 0.00 38.29 3.27
2325 2385 2.167281 CTCGTCCTTGATGGTGTCAGAT 59.833 50.000 0.00 0.00 38.29 2.90
2326 2386 2.094026 TCGTCCTTGATGGTGTCAGATG 60.094 50.000 0.00 0.00 38.29 2.90
2327 2387 2.354103 CGTCCTTGATGGTGTCAGATGT 60.354 50.000 0.00 0.00 38.29 3.06
2328 2388 3.005554 GTCCTTGATGGTGTCAGATGTG 58.994 50.000 0.00 0.00 38.29 3.21
2329 2389 2.905736 TCCTTGATGGTGTCAGATGTGA 59.094 45.455 0.00 0.00 38.29 3.58
2330 2390 3.327464 TCCTTGATGGTGTCAGATGTGAA 59.673 43.478 0.00 0.00 38.29 3.18
2331 2391 3.688185 CCTTGATGGTGTCAGATGTGAAG 59.312 47.826 0.00 0.00 38.29 3.02
2332 2392 3.339253 TGATGGTGTCAGATGTGAAGG 57.661 47.619 0.00 0.00 33.27 3.46
2333 2393 2.639347 TGATGGTGTCAGATGTGAAGGT 59.361 45.455 0.00 0.00 33.27 3.50
2334 2394 3.837731 TGATGGTGTCAGATGTGAAGGTA 59.162 43.478 0.00 0.00 33.27 3.08
2335 2395 4.285775 TGATGGTGTCAGATGTGAAGGTAA 59.714 41.667 0.00 0.00 33.27 2.85
2336 2396 4.908601 TGGTGTCAGATGTGAAGGTAAT 57.091 40.909 0.00 0.00 33.27 1.89
2337 2397 4.832248 TGGTGTCAGATGTGAAGGTAATC 58.168 43.478 0.00 0.00 33.27 1.75
2338 2398 3.865745 GGTGTCAGATGTGAAGGTAATCG 59.134 47.826 0.00 0.00 33.27 3.34
2339 2399 4.381612 GGTGTCAGATGTGAAGGTAATCGA 60.382 45.833 0.00 0.00 33.27 3.59
2340 2400 5.352284 GTGTCAGATGTGAAGGTAATCGAT 58.648 41.667 0.00 0.00 33.27 3.59
2341 2401 5.233050 GTGTCAGATGTGAAGGTAATCGATG 59.767 44.000 0.00 0.00 33.27 3.84
2342 2402 4.747108 GTCAGATGTGAAGGTAATCGATGG 59.253 45.833 0.00 0.00 33.27 3.51
2343 2403 3.496130 CAGATGTGAAGGTAATCGATGGC 59.504 47.826 0.00 0.00 0.00 4.40
2344 2404 1.934589 TGTGAAGGTAATCGATGGCG 58.065 50.000 0.00 0.00 39.35 5.69
2345 2405 1.206132 TGTGAAGGTAATCGATGGCGT 59.794 47.619 0.00 0.00 38.98 5.68
2346 2406 1.859080 GTGAAGGTAATCGATGGCGTC 59.141 52.381 0.00 0.00 38.98 5.19
2356 2416 3.982372 GATGGCGTCGCTCCGTCAA 62.982 63.158 18.11 0.00 46.53 3.18
2357 2417 3.583276 ATGGCGTCGCTCCGTCAAA 62.583 57.895 18.11 0.00 46.53 2.69
2358 2418 3.479269 GGCGTCGCTCCGTCAAAG 61.479 66.667 18.11 0.00 31.49 2.77
2359 2419 2.430244 GCGTCGCTCCGTCAAAGA 60.430 61.111 10.68 0.00 0.00 2.52
2360 2420 1.805945 GCGTCGCTCCGTCAAAGAT 60.806 57.895 10.68 0.00 0.00 2.40
2361 2421 0.524816 GCGTCGCTCCGTCAAAGATA 60.525 55.000 10.68 0.00 0.00 1.98
2362 2422 1.189403 CGTCGCTCCGTCAAAGATAC 58.811 55.000 0.00 0.00 0.00 2.24
2363 2423 1.466866 CGTCGCTCCGTCAAAGATACA 60.467 52.381 0.00 0.00 0.00 2.29
2364 2424 2.602878 GTCGCTCCGTCAAAGATACAA 58.397 47.619 0.00 0.00 0.00 2.41
2365 2425 3.187700 GTCGCTCCGTCAAAGATACAAT 58.812 45.455 0.00 0.00 0.00 2.71
2366 2426 4.357142 GTCGCTCCGTCAAAGATACAATA 58.643 43.478 0.00 0.00 0.00 1.90
2367 2427 4.982916 GTCGCTCCGTCAAAGATACAATAT 59.017 41.667 0.00 0.00 0.00 1.28
2368 2428 4.982295 TCGCTCCGTCAAAGATACAATATG 59.018 41.667 0.00 0.00 0.00 1.78
2369 2429 4.745125 CGCTCCGTCAAAGATACAATATGT 59.255 41.667 0.00 0.00 0.00 2.29
2370 2430 5.234329 CGCTCCGTCAAAGATACAATATGTT 59.766 40.000 0.00 0.00 0.00 2.71
2371 2431 6.422223 GCTCCGTCAAAGATACAATATGTTG 58.578 40.000 0.00 0.00 41.20 3.33
2372 2432 6.257849 GCTCCGTCAAAGATACAATATGTTGA 59.742 38.462 9.40 0.00 38.71 3.18
2373 2433 7.041780 GCTCCGTCAAAGATACAATATGTTGAT 60.042 37.037 9.40 0.00 38.71 2.57
2374 2434 8.141835 TCCGTCAAAGATACAATATGTTGATG 57.858 34.615 9.40 0.00 38.71 3.07
2375 2435 6.852853 CCGTCAAAGATACAATATGTTGATGC 59.147 38.462 9.40 0.00 38.71 3.91
2376 2436 7.408910 CGTCAAAGATACAATATGTTGATGCA 58.591 34.615 9.40 0.00 38.71 3.96
2377 2437 8.071967 CGTCAAAGATACAATATGTTGATGCAT 58.928 33.333 9.40 0.00 38.71 3.96
2378 2438 9.740239 GTCAAAGATACAATATGTTGATGCATT 57.260 29.630 9.40 0.00 38.71 3.56
2387 2447 8.742777 ACAATATGTTGATGCATTTTAGAGTGT 58.257 29.630 9.40 0.00 38.71 3.55
2390 2450 9.836864 ATATGTTGATGCATTTTAGAGTGTAGA 57.163 29.630 0.00 0.00 0.00 2.59
2391 2451 8.743085 ATGTTGATGCATTTTAGAGTGTAGAT 57.257 30.769 0.00 0.00 0.00 1.98
2392 2452 8.565896 TGTTGATGCATTTTAGAGTGTAGATT 57.434 30.769 0.00 0.00 0.00 2.40
2393 2453 8.668353 TGTTGATGCATTTTAGAGTGTAGATTC 58.332 33.333 0.00 0.00 0.00 2.52
2394 2454 8.668353 GTTGATGCATTTTAGAGTGTAGATTCA 58.332 33.333 0.00 0.00 0.00 2.57
2395 2455 8.969260 TGATGCATTTTAGAGTGTAGATTCAT 57.031 30.769 0.00 0.00 0.00 2.57
2396 2456 9.399797 TGATGCATTTTAGAGTGTAGATTCATT 57.600 29.630 0.00 0.00 0.00 2.57
2397 2457 9.875675 GATGCATTTTAGAGTGTAGATTCATTC 57.124 33.333 0.00 0.00 0.00 2.67
2398 2458 8.791327 TGCATTTTAGAGTGTAGATTCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
2399 2459 9.399797 TGCATTTTAGAGTGTAGATTCATTCAT 57.600 29.630 0.00 0.00 0.00 2.57
2405 2465 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2406 2466 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
2407 2467 8.800332 AGAGTGTAGATTCATTCATTTTGCTTT 58.200 29.630 0.00 0.00 0.00 3.51
2408 2468 8.752766 AGTGTAGATTCATTCATTTTGCTTTG 57.247 30.769 0.00 0.00 0.00 2.77
2409 2469 8.362639 AGTGTAGATTCATTCATTTTGCTTTGT 58.637 29.630 0.00 0.00 0.00 2.83
2410 2470 8.430063 GTGTAGATTCATTCATTTTGCTTTGTG 58.570 33.333 0.00 0.00 0.00 3.33
2411 2471 8.143193 TGTAGATTCATTCATTTTGCTTTGTGT 58.857 29.630 0.00 0.00 0.00 3.72
2412 2472 7.416154 AGATTCATTCATTTTGCTTTGTGTG 57.584 32.000 0.00 0.00 0.00 3.82
2413 2473 6.987992 AGATTCATTCATTTTGCTTTGTGTGT 59.012 30.769 0.00 0.00 0.00 3.72
2414 2474 8.143193 AGATTCATTCATTTTGCTTTGTGTGTA 58.857 29.630 0.00 0.00 0.00 2.90
2415 2475 7.697352 TTCATTCATTTTGCTTTGTGTGTAG 57.303 32.000 0.00 0.00 0.00 2.74
2416 2476 6.804677 TCATTCATTTTGCTTTGTGTGTAGT 58.195 32.000 0.00 0.00 0.00 2.73
2417 2477 6.917477 TCATTCATTTTGCTTTGTGTGTAGTC 59.083 34.615 0.00 0.00 0.00 2.59
2418 2478 6.449635 TTCATTTTGCTTTGTGTGTAGTCT 57.550 33.333 0.00 0.00 0.00 3.24
2419 2479 7.561021 TTCATTTTGCTTTGTGTGTAGTCTA 57.439 32.000 0.00 0.00 0.00 2.59
2420 2480 7.744087 TCATTTTGCTTTGTGTGTAGTCTAT 57.256 32.000 0.00 0.00 0.00 1.98
2421 2481 8.840833 TCATTTTGCTTTGTGTGTAGTCTATA 57.159 30.769 0.00 0.00 0.00 1.31
2422 2482 8.935844 TCATTTTGCTTTGTGTGTAGTCTATAG 58.064 33.333 0.00 0.00 0.00 1.31
2423 2483 8.721478 CATTTTGCTTTGTGTGTAGTCTATAGT 58.279 33.333 0.00 0.00 0.00 2.12
2424 2484 7.652300 TTTGCTTTGTGTGTAGTCTATAGTG 57.348 36.000 0.00 0.00 0.00 2.74
2425 2485 5.720202 TGCTTTGTGTGTAGTCTATAGTGG 58.280 41.667 0.00 0.00 0.00 4.00
2426 2486 5.479027 TGCTTTGTGTGTAGTCTATAGTGGA 59.521 40.000 0.00 0.00 0.00 4.02
2427 2487 6.014925 TGCTTTGTGTGTAGTCTATAGTGGAA 60.015 38.462 0.00 0.00 0.00 3.53
2428 2488 7.042335 GCTTTGTGTGTAGTCTATAGTGGAAT 58.958 38.462 0.00 0.00 0.00 3.01
2429 2489 7.222999 GCTTTGTGTGTAGTCTATAGTGGAATC 59.777 40.741 0.00 0.00 0.00 2.52
2430 2490 7.956328 TTGTGTGTAGTCTATAGTGGAATCT 57.044 36.000 0.00 0.00 0.00 2.40
2431 2491 7.569639 TGTGTGTAGTCTATAGTGGAATCTC 57.430 40.000 0.00 0.00 0.00 2.75
2432 2492 7.347252 TGTGTGTAGTCTATAGTGGAATCTCT 58.653 38.462 0.00 0.00 0.00 3.10
2433 2493 8.491958 TGTGTGTAGTCTATAGTGGAATCTCTA 58.508 37.037 0.00 0.00 0.00 2.43
2434 2494 8.995220 GTGTGTAGTCTATAGTGGAATCTCTAG 58.005 40.741 0.00 0.00 0.00 2.43
2435 2495 8.935741 TGTGTAGTCTATAGTGGAATCTCTAGA 58.064 37.037 0.00 0.00 0.00 2.43
2436 2496 9.781633 GTGTAGTCTATAGTGGAATCTCTAGAA 57.218 37.037 0.00 0.00 29.43 2.10
2440 2500 9.569122 AGTCTATAGTGGAATCTCTAGAAAGAC 57.431 37.037 0.00 0.00 33.37 3.01
2441 2501 9.569122 GTCTATAGTGGAATCTCTAGAAAGACT 57.431 37.037 0.00 0.00 32.21 3.24
2444 2504 5.729510 AGTGGAATCTCTAGAAAGACTTGC 58.270 41.667 0.00 0.00 0.00 4.01
2445 2505 5.247110 AGTGGAATCTCTAGAAAGACTTGCA 59.753 40.000 0.00 0.00 0.00 4.08
2446 2506 6.070309 AGTGGAATCTCTAGAAAGACTTGCAT 60.070 38.462 0.00 0.00 0.00 3.96
2447 2507 6.257630 GTGGAATCTCTAGAAAGACTTGCATC 59.742 42.308 0.00 0.00 0.00 3.91
2448 2508 5.461737 GGAATCTCTAGAAAGACTTGCATCG 59.538 44.000 0.00 0.00 0.00 3.84
2449 2509 5.843673 ATCTCTAGAAAGACTTGCATCGA 57.156 39.130 0.00 0.00 0.00 3.59
2450 2510 5.242069 TCTCTAGAAAGACTTGCATCGAG 57.758 43.478 0.00 0.00 0.00 4.04
2451 2511 4.097135 TCTCTAGAAAGACTTGCATCGAGG 59.903 45.833 0.00 0.00 0.00 4.63
2452 2512 2.393271 AGAAAGACTTGCATCGAGGG 57.607 50.000 0.00 0.00 0.00 4.30
2453 2513 1.902508 AGAAAGACTTGCATCGAGGGA 59.097 47.619 0.00 0.00 0.00 4.20
2454 2514 2.093764 AGAAAGACTTGCATCGAGGGAG 60.094 50.000 0.00 0.00 0.00 4.30
2477 2537 0.331278 ACAATTGAATCCGCTCCCCA 59.669 50.000 13.59 0.00 0.00 4.96
2478 2538 0.740737 CAATTGAATCCGCTCCCCAC 59.259 55.000 0.00 0.00 0.00 4.61
2479 2539 0.395724 AATTGAATCCGCTCCCCACC 60.396 55.000 0.00 0.00 0.00 4.61
2480 2540 1.281925 ATTGAATCCGCTCCCCACCT 61.282 55.000 0.00 0.00 0.00 4.00
2535 2595 9.436957 AATTGACGTCTGTAATCATTTTACTCT 57.563 29.630 17.92 0.00 0.00 3.24
2536 2596 7.812309 TGACGTCTGTAATCATTTTACTCTG 57.188 36.000 17.92 0.00 0.00 3.35
2537 2597 7.599171 TGACGTCTGTAATCATTTTACTCTGA 58.401 34.615 17.92 0.00 0.00 3.27
2563 2629 6.142817 ACGATGACTTTGTTTGTTAATGCTC 58.857 36.000 0.00 0.00 0.00 4.26
2685 2751 1.981636 CTCTTGCCTCTGCTCTGGT 59.018 57.895 0.00 0.00 38.71 4.00
2726 2792 1.026182 AAAAGAGCATCGCATCGGCA 61.026 50.000 0.00 0.00 42.67 5.69
2877 2958 4.556233 TGATGTCTGTCTACGGAAACAAG 58.444 43.478 0.00 0.00 32.23 3.16
3007 3091 2.271800 GATGCCTTCTTGTCGTAGTGG 58.728 52.381 0.00 0.00 0.00 4.00
3112 3196 1.080230 CGATAGCCCTGATGCCGAG 60.080 63.158 0.00 0.00 0.00 4.63
3358 3442 1.641577 GCGGTAGCTTAACTGGTGAG 58.358 55.000 0.00 0.00 41.01 3.51
3399 3483 7.012138 GGAGCCAAAGAGATGTGCATATATATG 59.988 40.741 17.01 17.01 36.78 1.78
3673 3972 1.003355 CATCCACGGCTGGTCTTGT 60.003 57.895 0.00 0.00 38.90 3.16
3744 4055 1.067582 GAACGGATCGAGGCGGATT 59.932 57.895 0.00 0.00 0.00 3.01
3857 4174 5.999205 TGGTATTTTGCCATTGTCTTGAT 57.001 34.783 0.00 0.00 0.00 2.57
4001 4321 1.002134 CCACCGCCTCCACTTGAAT 60.002 57.895 0.00 0.00 0.00 2.57
4200 4527 3.270092 CGCGACGAGATCCTCCGA 61.270 66.667 0.00 0.00 0.00 4.55
4213 4554 0.180406 CCTCCGACCCCAAATTCGAT 59.820 55.000 0.00 0.00 37.43 3.59
4224 4565 1.737236 CAAATTCGATCGCCAGTTGGA 59.263 47.619 11.09 0.00 37.39 3.53
4401 4752 0.399091 ATGGAGGAGAATGCCGGAGA 60.399 55.000 5.05 0.00 0.00 3.71
4405 4756 0.399091 AGGAGAATGCCGGAGATGGA 60.399 55.000 5.05 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.647084 GTCCTGGCGTGACACAAAC 59.353 57.895 6.37 0.00 32.91 2.93
118 119 4.083802 GGAAGAAGAGTCAAACGGTTGATG 60.084 45.833 20.56 0.00 45.38 3.07
188 189 2.722201 GGTCTCCCACCGAGCGAAT 61.722 63.158 0.00 0.00 38.62 3.34
269 270 1.262950 TGCAAACGCTCACACATACAC 59.737 47.619 0.00 0.00 0.00 2.90
418 453 3.922171 AAAAAGCATTTGTGTTGGGGA 57.078 38.095 0.00 0.00 39.02 4.81
593 629 3.133183 TGCGGGAACTAATGCACAGTATA 59.867 43.478 3.35 0.00 31.31 1.47
594 630 2.093181 TGCGGGAACTAATGCACAGTAT 60.093 45.455 3.35 0.00 31.31 2.12
595 631 1.276705 TGCGGGAACTAATGCACAGTA 59.723 47.619 3.35 0.00 31.31 2.74
596 632 0.036164 TGCGGGAACTAATGCACAGT 59.964 50.000 0.00 0.00 31.31 3.55
597 633 1.164411 TTGCGGGAACTAATGCACAG 58.836 50.000 0.00 0.00 37.01 3.66
610 646 2.861462 TGAACTTTGACTTTTGCGGG 57.139 45.000 0.00 0.00 0.00 6.13
689 725 9.357652 GGAGTGTTTTTCGTATTATGTACTACA 57.642 33.333 0.00 0.00 0.00 2.74
690 726 9.357652 TGGAGTGTTTTTCGTATTATGTACTAC 57.642 33.333 0.00 0.00 0.00 2.73
692 728 9.095065 GATGGAGTGTTTTTCGTATTATGTACT 57.905 33.333 0.00 0.00 0.00 2.73
699 735 6.878923 TCATGAGATGGAGTGTTTTTCGTATT 59.121 34.615 0.00 0.00 0.00 1.89
703 739 5.808042 ATCATGAGATGGAGTGTTTTTCG 57.192 39.130 0.09 0.00 31.91 3.46
734 774 9.778741 GACATCTAGAATATCAAACCAATACCA 57.221 33.333 0.00 0.00 0.00 3.25
735 775 8.926710 CGACATCTAGAATATCAAACCAATACC 58.073 37.037 0.00 0.00 0.00 2.73
736 776 9.692749 TCGACATCTAGAATATCAAACCAATAC 57.307 33.333 0.00 0.00 0.00 1.89
778 821 7.986889 AGTCAGACTTTGCAAATTTTAACCAAT 59.013 29.630 13.23 0.00 0.00 3.16
856 904 6.600822 TCACAAATCCAAAGGAAATGCAAAAA 59.399 30.769 0.00 0.00 34.34 1.94
894 942 5.012239 TCTTTTCTGCACTGCTTAATGGAT 58.988 37.500 1.98 0.00 0.00 3.41
959 1007 2.182014 GTTGTCTCGTGTGTTTTTGCC 58.818 47.619 0.00 0.00 0.00 4.52
960 1008 2.182014 GGTTGTCTCGTGTGTTTTTGC 58.818 47.619 0.00 0.00 0.00 3.68
963 1011 1.011333 CCGGTTGTCTCGTGTGTTTT 58.989 50.000 0.00 0.00 0.00 2.43
964 1012 0.108041 ACCGGTTGTCTCGTGTGTTT 60.108 50.000 0.00 0.00 0.00 2.83
966 1014 1.227147 CACCGGTTGTCTCGTGTGT 60.227 57.895 2.97 0.00 0.00 3.72
967 1015 1.954146 CCACCGGTTGTCTCGTGTG 60.954 63.158 2.97 0.00 0.00 3.82
968 1016 2.420043 CCACCGGTTGTCTCGTGT 59.580 61.111 2.97 0.00 0.00 4.49
969 1017 3.041940 GCCACCGGTTGTCTCGTG 61.042 66.667 2.97 0.00 0.00 4.35
972 1020 2.668550 GTGGCCACCGGTTGTCTC 60.669 66.667 26.31 4.09 0.00 3.36
1041 1090 2.235155 GAGGTGAAGGAAAGGAGGACTC 59.765 54.545 0.00 0.00 0.00 3.36
1042 1091 2.261729 GAGGTGAAGGAAAGGAGGACT 58.738 52.381 0.00 0.00 0.00 3.85
1043 1092 1.279558 GGAGGTGAAGGAAAGGAGGAC 59.720 57.143 0.00 0.00 0.00 3.85
1044 1093 1.152271 AGGAGGTGAAGGAAAGGAGGA 59.848 52.381 0.00 0.00 0.00 3.71
1045 1094 1.662686 AGGAGGTGAAGGAAAGGAGG 58.337 55.000 0.00 0.00 0.00 4.30
1046 1095 2.354203 CGAAGGAGGTGAAGGAAAGGAG 60.354 54.545 0.00 0.00 0.00 3.69
1072 1121 1.279271 CAGGGTAGGTGAGTTCTTGGG 59.721 57.143 0.00 0.00 0.00 4.12
1191 1240 2.363018 CCAGGGACGAGCTGGAGA 60.363 66.667 1.44 0.00 40.50 3.71
1193 1242 2.363018 CTCCAGGGACGAGCTGGA 60.363 66.667 1.44 0.00 44.11 3.86
1204 1253 3.465403 CGGGACAGCTCCTCCAGG 61.465 72.222 8.88 0.00 36.68 4.45
1357 1406 0.178932 TATCCGTAGAGCCTGGCCAT 60.179 55.000 16.57 6.78 0.00 4.40
1358 1407 0.178932 ATATCCGTAGAGCCTGGCCA 60.179 55.000 16.57 4.71 0.00 5.36
1385 1435 7.500807 AACAAATGTTCGGTAAAATATTCGC 57.499 32.000 0.00 0.00 31.64 4.70
1407 1457 2.223711 ACACGCCAATGTTCCTGAAAAC 60.224 45.455 0.00 0.00 0.00 2.43
1445 1495 2.481952 GAGCAAATCGATGGCATAGACC 59.518 50.000 20.44 2.50 0.00 3.85
1472 1522 4.329545 GGCTTGTCTGACGCCCCA 62.330 66.667 13.75 0.00 37.86 4.96
1517 1567 3.395630 GGACTTACCTCGGCCCAA 58.604 61.111 0.00 0.00 35.41 4.12
1551 1601 6.348213 CGTCTTTACATTTGTTTACAGAGGGG 60.348 42.308 0.00 0.00 0.00 4.79
1567 1617 6.417635 CGTAAGTGACCTAAAACGTCTTTACA 59.582 38.462 0.00 0.00 34.39 2.41
1568 1618 6.129088 CCGTAAGTGACCTAAAACGTCTTTAC 60.129 42.308 0.00 0.00 33.06 2.01
1632 1685 8.474025 CCAGACACCCAATTAAGCAATTTAATA 58.526 33.333 0.00 0.00 40.29 0.98
1650 1703 2.499214 TGGCACAAAACCAGACACC 58.501 52.632 0.00 0.00 31.92 4.16
1779 1832 3.565482 ACCATTCCATATTCGACATGTGC 59.435 43.478 1.15 0.00 0.00 4.57
1810 1863 0.677731 TAGGCAGCAATGACACAGCC 60.678 55.000 0.00 0.00 42.31 4.85
1851 1904 6.693315 ACAAAGTTACCATTCCATATTCGG 57.307 37.500 0.00 0.00 0.00 4.30
1871 1924 5.227569 TCATTCTTCAGAACCAGCTACAA 57.772 39.130 0.00 0.00 36.80 2.41
2020 2080 9.884814 AGACATATATTTAGGAACAGAGGTAGT 57.115 33.333 0.00 0.00 0.00 2.73
2040 2100 9.913310 CCATAGTGGAATCTCTATAGAGACATA 57.087 37.037 30.31 17.65 46.45 2.29
2041 2101 8.619281 TCCATAGTGGAATCTCTATAGAGACAT 58.381 37.037 30.31 22.72 46.73 3.06
2042 2102 7.990055 TCCATAGTGGAATCTCTATAGAGACA 58.010 38.462 30.31 21.78 46.73 3.41
2055 2115 8.791662 ACATCTGTATGTGGTCCATAGTGGAAT 61.792 40.741 0.00 0.00 45.80 3.01
2056 2116 7.545991 ACATCTGTATGTGGTCCATAGTGGAA 61.546 42.308 0.00 0.00 45.80 3.53
2057 2117 3.989056 TCTGTATGTGGTCCATAGTGGA 58.011 45.455 0.00 0.00 45.98 4.02
2058 2118 4.101585 ACATCTGTATGTGGTCCATAGTGG 59.898 45.833 0.00 0.00 44.79 4.00
2059 2119 5.282055 ACATCTGTATGTGGTCCATAGTG 57.718 43.478 0.00 0.00 44.79 2.74
2060 2120 5.957771 AACATCTGTATGTGGTCCATAGT 57.042 39.130 0.00 0.00 45.79 2.12
2061 2121 7.630242 AAAAACATCTGTATGTGGTCCATAG 57.370 36.000 0.00 0.00 45.79 2.23
2096 2156 3.951979 ATACAAAGATACGCAGCTTGC 57.048 42.857 0.00 0.00 40.69 4.01
2097 2157 5.469373 TCAATACAAAGATACGCAGCTTG 57.531 39.130 0.00 0.00 28.82 4.01
2098 2158 7.210174 TCTATCAATACAAAGATACGCAGCTT 58.790 34.615 0.00 0.00 29.66 3.74
2099 2159 6.749139 TCTATCAATACAAAGATACGCAGCT 58.251 36.000 0.00 0.00 0.00 4.24
2100 2160 7.359598 CCTTCTATCAATACAAAGATACGCAGC 60.360 40.741 0.00 0.00 0.00 5.25
2101 2161 7.867909 TCCTTCTATCAATACAAAGATACGCAG 59.132 37.037 0.00 0.00 0.00 5.18
2102 2162 7.722363 TCCTTCTATCAATACAAAGATACGCA 58.278 34.615 0.00 0.00 0.00 5.24
2103 2163 8.082852 TCTCCTTCTATCAATACAAAGATACGC 58.917 37.037 0.00 0.00 0.00 4.42
2104 2164 9.619316 CTCTCCTTCTATCAATACAAAGATACG 57.381 37.037 0.00 0.00 0.00 3.06
2108 2168 9.475620 TGTACTCTCCTTCTATCAATACAAAGA 57.524 33.333 0.00 0.00 0.00 2.52
2111 2171 8.198109 GCTTGTACTCTCCTTCTATCAATACAA 58.802 37.037 0.00 0.00 0.00 2.41
2112 2172 7.342026 TGCTTGTACTCTCCTTCTATCAATACA 59.658 37.037 0.00 0.00 0.00 2.29
2113 2173 7.717568 TGCTTGTACTCTCCTTCTATCAATAC 58.282 38.462 0.00 0.00 0.00 1.89
2114 2174 7.898014 TGCTTGTACTCTCCTTCTATCAATA 57.102 36.000 0.00 0.00 0.00 1.90
2115 2175 6.798427 TGCTTGTACTCTCCTTCTATCAAT 57.202 37.500 0.00 0.00 0.00 2.57
2116 2176 6.407412 CCATGCTTGTACTCTCCTTCTATCAA 60.407 42.308 0.00 0.00 0.00 2.57
2117 2177 5.069648 CCATGCTTGTACTCTCCTTCTATCA 59.930 44.000 0.00 0.00 0.00 2.15
2118 2178 5.510520 CCCATGCTTGTACTCTCCTTCTATC 60.511 48.000 0.00 0.00 0.00 2.08
2119 2179 4.346418 CCCATGCTTGTACTCTCCTTCTAT 59.654 45.833 0.00 0.00 0.00 1.98
2120 2180 3.706594 CCCATGCTTGTACTCTCCTTCTA 59.293 47.826 0.00 0.00 0.00 2.10
2121 2181 2.503356 CCCATGCTTGTACTCTCCTTCT 59.497 50.000 0.00 0.00 0.00 2.85
2122 2182 2.501723 TCCCATGCTTGTACTCTCCTTC 59.498 50.000 0.00 0.00 0.00 3.46
2123 2183 2.551270 TCCCATGCTTGTACTCTCCTT 58.449 47.619 0.00 0.00 0.00 3.36
2124 2184 2.254152 TCCCATGCTTGTACTCTCCT 57.746 50.000 0.00 0.00 0.00 3.69
2125 2185 3.567478 AATCCCATGCTTGTACTCTCC 57.433 47.619 0.00 0.00 0.00 3.71
2126 2186 5.023533 TGTAATCCCATGCTTGTACTCTC 57.976 43.478 0.00 0.00 0.00 3.20
2127 2187 5.186198 GTTGTAATCCCATGCTTGTACTCT 58.814 41.667 0.00 0.00 0.00 3.24
2128 2188 4.034048 CGTTGTAATCCCATGCTTGTACTC 59.966 45.833 0.00 0.00 0.00 2.59
2129 2189 3.938963 CGTTGTAATCCCATGCTTGTACT 59.061 43.478 0.00 0.00 0.00 2.73
2130 2190 3.486875 GCGTTGTAATCCCATGCTTGTAC 60.487 47.826 0.00 0.00 0.00 2.90
2131 2191 2.680841 GCGTTGTAATCCCATGCTTGTA 59.319 45.455 0.00 0.00 0.00 2.41
2132 2192 1.472480 GCGTTGTAATCCCATGCTTGT 59.528 47.619 0.00 0.00 0.00 3.16
2133 2193 1.745087 AGCGTTGTAATCCCATGCTTG 59.255 47.619 0.00 0.00 0.00 4.01
2134 2194 2.128771 AGCGTTGTAATCCCATGCTT 57.871 45.000 0.00 0.00 0.00 3.91
2135 2195 2.128771 AAGCGTTGTAATCCCATGCT 57.871 45.000 0.00 0.00 0.00 3.79
2136 2196 2.680841 TGTAAGCGTTGTAATCCCATGC 59.319 45.455 0.00 0.00 0.00 4.06
2137 2197 4.955925 TTGTAAGCGTTGTAATCCCATG 57.044 40.909 0.00 0.00 0.00 3.66
2138 2198 4.202010 GCATTGTAAGCGTTGTAATCCCAT 60.202 41.667 0.00 0.00 0.00 4.00
2139 2199 3.127895 GCATTGTAAGCGTTGTAATCCCA 59.872 43.478 0.00 0.00 0.00 4.37
2140 2200 3.488553 GGCATTGTAAGCGTTGTAATCCC 60.489 47.826 0.00 0.00 0.00 3.85
2141 2201 3.127895 TGGCATTGTAAGCGTTGTAATCC 59.872 43.478 0.00 0.00 0.00 3.01
2142 2202 4.349663 TGGCATTGTAAGCGTTGTAATC 57.650 40.909 0.00 0.00 0.00 1.75
2143 2203 4.157656 ACATGGCATTGTAAGCGTTGTAAT 59.842 37.500 0.00 0.00 0.00 1.89
2144 2204 3.504134 ACATGGCATTGTAAGCGTTGTAA 59.496 39.130 0.00 0.00 0.00 2.41
2145 2205 3.078097 ACATGGCATTGTAAGCGTTGTA 58.922 40.909 0.00 0.00 0.00 2.41
2146 2206 1.885887 ACATGGCATTGTAAGCGTTGT 59.114 42.857 0.00 0.00 0.00 3.32
2147 2207 2.252747 CACATGGCATTGTAAGCGTTG 58.747 47.619 0.00 0.00 0.00 4.10
2148 2208 1.402720 GCACATGGCATTGTAAGCGTT 60.403 47.619 0.00 0.00 43.97 4.84
2149 2209 0.171007 GCACATGGCATTGTAAGCGT 59.829 50.000 0.00 0.00 43.97 5.07
2150 2210 0.862701 CGCACATGGCATTGTAAGCG 60.863 55.000 14.87 14.87 45.17 4.68
2151 2211 1.141591 GCGCACATGGCATTGTAAGC 61.142 55.000 0.30 5.41 45.17 3.09
2152 2212 0.170784 TGCGCACATGGCATTGTAAG 59.829 50.000 5.66 0.00 45.17 2.34
2153 2213 0.109365 GTGCGCACATGGCATTGTAA 60.109 50.000 34.52 0.00 45.17 2.41
2154 2214 0.959867 AGTGCGCACATGGCATTGTA 60.960 50.000 39.21 0.00 45.17 2.41
2155 2215 0.959867 TAGTGCGCACATGGCATTGT 60.960 50.000 39.21 19.56 45.17 2.71
2156 2216 0.248336 CTAGTGCGCACATGGCATTG 60.248 55.000 39.21 16.67 45.17 2.82
2157 2217 1.378882 CCTAGTGCGCACATGGCATT 61.379 55.000 39.21 21.03 45.17 3.56
2158 2218 1.820906 CCTAGTGCGCACATGGCAT 60.821 57.895 39.21 21.76 45.17 4.40
2159 2219 2.436469 CCTAGTGCGCACATGGCA 60.436 61.111 39.21 18.69 45.17 4.92
2160 2220 3.880846 GCCTAGTGCGCACATGGC 61.881 66.667 40.10 40.10 41.76 4.40
2161 2221 1.820906 ATGCCTAGTGCGCACATGG 60.821 57.895 39.21 35.79 45.60 3.66
2162 2222 1.354155 CATGCCTAGTGCGCACATG 59.646 57.895 39.21 28.56 45.60 3.21
2163 2223 1.820906 CCATGCCTAGTGCGCACAT 60.821 57.895 39.21 26.28 45.60 3.21
2164 2224 2.436469 CCATGCCTAGTGCGCACA 60.436 61.111 39.21 24.46 45.60 4.57
2165 2225 2.436646 ACCATGCCTAGTGCGCAC 60.437 61.111 32.79 32.79 45.60 5.34
2166 2226 2.436469 CACCATGCCTAGTGCGCA 60.436 61.111 5.66 5.66 45.60 6.09
2167 2227 1.745115 TTCACCATGCCTAGTGCGC 60.745 57.895 0.00 0.00 45.60 6.09
2168 2228 0.673333 TGTTCACCATGCCTAGTGCG 60.673 55.000 0.00 0.00 45.60 5.34
2169 2229 1.470098 CTTGTTCACCATGCCTAGTGC 59.530 52.381 0.00 0.00 41.77 4.40
2170 2230 1.470098 GCTTGTTCACCATGCCTAGTG 59.530 52.381 0.00 0.00 38.07 2.74
2171 2231 1.826385 GCTTGTTCACCATGCCTAGT 58.174 50.000 0.00 0.00 38.07 2.57
2172 2232 0.729116 CGCTTGTTCACCATGCCTAG 59.271 55.000 0.00 0.00 40.24 3.02
2173 2233 0.323302 TCGCTTGTTCACCATGCCTA 59.677 50.000 0.00 0.00 40.24 3.93
2174 2234 0.537143 TTCGCTTGTTCACCATGCCT 60.537 50.000 0.00 0.00 40.24 4.75
2175 2235 0.109597 CTTCGCTTGTTCACCATGCC 60.110 55.000 0.00 0.00 40.24 4.40
2176 2236 0.109597 CCTTCGCTTGTTCACCATGC 60.110 55.000 0.00 0.00 40.03 4.06
2177 2237 1.466167 CTCCTTCGCTTGTTCACCATG 59.534 52.381 0.00 0.00 0.00 3.66
2178 2238 1.813513 CTCCTTCGCTTGTTCACCAT 58.186 50.000 0.00 0.00 0.00 3.55
2179 2239 0.884704 GCTCCTTCGCTTGTTCACCA 60.885 55.000 0.00 0.00 0.00 4.17
2180 2240 0.884704 TGCTCCTTCGCTTGTTCACC 60.885 55.000 0.00 0.00 0.00 4.02
2181 2241 0.235926 GTGCTCCTTCGCTTGTTCAC 59.764 55.000 0.00 0.00 0.00 3.18
2182 2242 0.179059 TGTGCTCCTTCGCTTGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
2183 2243 0.944386 TTGTGCTCCTTCGCTTGTTC 59.056 50.000 0.00 0.00 0.00 3.18
2184 2244 0.663153 GTTGTGCTCCTTCGCTTGTT 59.337 50.000 0.00 0.00 0.00 2.83
2185 2245 0.463654 TGTTGTGCTCCTTCGCTTGT 60.464 50.000 0.00 0.00 0.00 3.16
2186 2246 0.236711 CTGTTGTGCTCCTTCGCTTG 59.763 55.000 0.00 0.00 0.00 4.01
2187 2247 0.106708 TCTGTTGTGCTCCTTCGCTT 59.893 50.000 0.00 0.00 0.00 4.68
2188 2248 0.322975 ATCTGTTGTGCTCCTTCGCT 59.677 50.000 0.00 0.00 0.00 4.93
2189 2249 1.929836 CTATCTGTTGTGCTCCTTCGC 59.070 52.381 0.00 0.00 0.00 4.70
2190 2250 2.544685 CCTATCTGTTGTGCTCCTTCG 58.455 52.381 0.00 0.00 0.00 3.79
2191 2251 2.420687 CCCCTATCTGTTGTGCTCCTTC 60.421 54.545 0.00 0.00 0.00 3.46
2192 2252 1.561542 CCCCTATCTGTTGTGCTCCTT 59.438 52.381 0.00 0.00 0.00 3.36
2193 2253 1.207791 CCCCTATCTGTTGTGCTCCT 58.792 55.000 0.00 0.00 0.00 3.69
2194 2254 0.912486 ACCCCTATCTGTTGTGCTCC 59.088 55.000 0.00 0.00 0.00 4.70
2195 2255 1.279271 ACACCCCTATCTGTTGTGCTC 59.721 52.381 0.00 0.00 0.00 4.26
2196 2256 1.003580 CACACCCCTATCTGTTGTGCT 59.996 52.381 0.00 0.00 0.00 4.40
2197 2257 1.453155 CACACCCCTATCTGTTGTGC 58.547 55.000 0.00 0.00 0.00 4.57
2198 2258 1.003580 AGCACACCCCTATCTGTTGTG 59.996 52.381 0.00 0.00 0.00 3.33
2199 2259 1.279271 GAGCACACCCCTATCTGTTGT 59.721 52.381 0.00 0.00 0.00 3.32
2200 2260 1.278985 TGAGCACACCCCTATCTGTTG 59.721 52.381 0.00 0.00 0.00 3.33
2201 2261 1.556911 CTGAGCACACCCCTATCTGTT 59.443 52.381 0.00 0.00 0.00 3.16
2202 2262 1.198713 CTGAGCACACCCCTATCTGT 58.801 55.000 0.00 0.00 0.00 3.41
2203 2263 0.179062 GCTGAGCACACCCCTATCTG 60.179 60.000 0.00 0.00 0.00 2.90
2204 2264 1.341156 GGCTGAGCACACCCCTATCT 61.341 60.000 6.82 0.00 0.00 1.98
2205 2265 1.147153 GGCTGAGCACACCCCTATC 59.853 63.158 6.82 0.00 0.00 2.08
2206 2266 2.378634 GGGCTGAGCACACCCCTAT 61.379 63.158 6.82 0.00 38.52 2.57
2207 2267 3.009115 GGGCTGAGCACACCCCTA 61.009 66.667 6.82 0.00 38.52 3.53
2222 2282 1.409427 CTCTAGTTTCTAGCCGTGGGG 59.591 57.143 0.00 0.00 0.00 4.96
2223 2283 2.099427 GTCTCTAGTTTCTAGCCGTGGG 59.901 54.545 0.00 0.00 0.00 4.61
2224 2284 3.018149 AGTCTCTAGTTTCTAGCCGTGG 58.982 50.000 0.00 0.00 0.00 4.94
2225 2285 4.260294 CGTAGTCTCTAGTTTCTAGCCGTG 60.260 50.000 0.00 0.00 0.00 4.94
2226 2286 3.870419 CGTAGTCTCTAGTTTCTAGCCGT 59.130 47.826 0.00 0.00 0.00 5.68
2227 2287 3.303263 GCGTAGTCTCTAGTTTCTAGCCG 60.303 52.174 0.00 0.00 0.00 5.52
2228 2288 3.303263 CGCGTAGTCTCTAGTTTCTAGCC 60.303 52.174 0.00 0.00 0.00 3.93
2229 2289 3.845662 GCGCGTAGTCTCTAGTTTCTAGC 60.846 52.174 8.43 0.00 0.00 3.42
2230 2290 3.303263 GGCGCGTAGTCTCTAGTTTCTAG 60.303 52.174 8.43 0.00 0.00 2.43
2231 2291 2.611292 GGCGCGTAGTCTCTAGTTTCTA 59.389 50.000 8.43 0.00 0.00 2.10
2232 2292 1.401199 GGCGCGTAGTCTCTAGTTTCT 59.599 52.381 8.43 0.00 0.00 2.52
2233 2293 1.825077 GGCGCGTAGTCTCTAGTTTC 58.175 55.000 8.43 0.00 0.00 2.78
2234 2294 0.098376 CGGCGCGTAGTCTCTAGTTT 59.902 55.000 8.43 0.00 0.00 2.66
2235 2295 1.712977 CCGGCGCGTAGTCTCTAGTT 61.713 60.000 8.43 0.00 0.00 2.24
2236 2296 2.178890 CCGGCGCGTAGTCTCTAGT 61.179 63.158 8.43 0.00 0.00 2.57
2237 2297 2.632541 CCGGCGCGTAGTCTCTAG 59.367 66.667 8.43 0.00 0.00 2.43
2238 2298 2.898840 CCCGGCGCGTAGTCTCTA 60.899 66.667 8.43 0.00 0.00 2.43
2241 2301 3.779850 TATCCCCGGCGCGTAGTCT 62.780 63.158 8.43 0.00 0.00 3.24
2242 2302 2.151049 ATTATCCCCGGCGCGTAGTC 62.151 60.000 8.43 0.00 0.00 2.59
2243 2303 2.205152 ATTATCCCCGGCGCGTAGT 61.205 57.895 8.43 0.00 0.00 2.73
2244 2304 1.736645 CATTATCCCCGGCGCGTAG 60.737 63.158 8.43 1.31 0.00 3.51
2245 2305 2.030490 AACATTATCCCCGGCGCGTA 62.030 55.000 8.43 0.00 0.00 4.42
2246 2306 2.879813 AAACATTATCCCCGGCGCGT 62.880 55.000 8.43 0.00 0.00 6.01
2247 2307 1.720694 AAAACATTATCCCCGGCGCG 61.721 55.000 0.00 0.00 0.00 6.86
2248 2308 0.248866 CAAAACATTATCCCCGGCGC 60.249 55.000 0.00 0.00 0.00 6.53
2249 2309 0.248866 GCAAAACATTATCCCCGGCG 60.249 55.000 0.00 0.00 0.00 6.46
2250 2310 0.820871 TGCAAAACATTATCCCCGGC 59.179 50.000 0.00 0.00 0.00 6.13
2251 2311 3.492482 GGATTGCAAAACATTATCCCCGG 60.492 47.826 1.71 0.00 31.74 5.73
2252 2312 3.716601 GGATTGCAAAACATTATCCCCG 58.283 45.455 1.71 0.00 31.74 5.73
2253 2313 3.492482 CCGGATTGCAAAACATTATCCCC 60.492 47.826 1.71 0.00 33.63 4.81
2254 2314 3.132111 ACCGGATTGCAAAACATTATCCC 59.868 43.478 9.46 0.00 33.63 3.85
2255 2315 4.385358 ACCGGATTGCAAAACATTATCC 57.615 40.909 9.46 2.73 33.79 2.59
2256 2316 4.976116 GCTACCGGATTGCAAAACATTATC 59.024 41.667 9.46 0.00 0.00 1.75
2257 2317 4.497340 CGCTACCGGATTGCAAAACATTAT 60.497 41.667 9.46 0.00 0.00 1.28
2258 2318 3.181505 CGCTACCGGATTGCAAAACATTA 60.182 43.478 9.46 0.00 0.00 1.90
2259 2319 2.415357 CGCTACCGGATTGCAAAACATT 60.415 45.455 9.46 0.00 0.00 2.71
2260 2320 1.132262 CGCTACCGGATTGCAAAACAT 59.868 47.619 9.46 0.00 0.00 2.71
2261 2321 0.519519 CGCTACCGGATTGCAAAACA 59.480 50.000 9.46 0.00 0.00 2.83
2262 2322 0.796870 GCGCTACCGGATTGCAAAAC 60.797 55.000 9.46 0.26 34.32 2.43
2263 2323 1.504446 GCGCTACCGGATTGCAAAA 59.496 52.632 9.46 0.00 34.32 2.44
2264 2324 2.403378 GGCGCTACCGGATTGCAAA 61.403 57.895 9.46 0.00 34.32 3.68
2265 2325 2.822255 GGCGCTACCGGATTGCAA 60.822 61.111 9.46 0.00 34.32 4.08
2266 2326 4.849310 GGGCGCTACCGGATTGCA 62.849 66.667 9.46 0.00 40.62 4.08
2281 2341 3.488569 TCTATGGGCCAAGGCGGG 61.489 66.667 11.89 0.00 43.06 6.13
2282 2342 2.203209 GTCTATGGGCCAAGGCGG 60.203 66.667 11.89 0.00 43.06 6.13
2283 2343 2.588877 CGTCTATGGGCCAAGGCG 60.589 66.667 21.79 21.79 43.06 5.52
2284 2344 2.902343 GCGTCTATGGGCCAAGGC 60.902 66.667 11.89 8.13 41.06 4.35
2285 2345 2.588877 CGCGTCTATGGGCCAAGG 60.589 66.667 11.89 6.53 0.00 3.61
2286 2346 3.272334 GCGCGTCTATGGGCCAAG 61.272 66.667 11.89 9.90 41.52 3.61
2300 2360 2.892425 CCATCAAGGACGAGGCGC 60.892 66.667 0.00 0.00 41.22 6.53
2301 2361 1.811266 CACCATCAAGGACGAGGCG 60.811 63.158 0.00 0.00 41.22 5.52
2302 2362 0.741221 GACACCATCAAGGACGAGGC 60.741 60.000 0.00 0.00 41.22 4.70
2303 2363 0.608130 TGACACCATCAAGGACGAGG 59.392 55.000 0.00 0.00 41.22 4.63
2304 2364 1.546029 TCTGACACCATCAAGGACGAG 59.454 52.381 0.00 0.00 41.22 4.18
2305 2365 1.627864 TCTGACACCATCAAGGACGA 58.372 50.000 0.00 0.00 41.22 4.20
2306 2366 2.274437 CATCTGACACCATCAAGGACG 58.726 52.381 0.00 0.00 41.22 4.79
2307 2367 3.005554 CACATCTGACACCATCAAGGAC 58.994 50.000 0.00 0.00 41.22 3.85
2308 2368 2.905736 TCACATCTGACACCATCAAGGA 59.094 45.455 0.00 0.00 41.22 3.36
2309 2369 3.339253 TCACATCTGACACCATCAAGG 57.661 47.619 0.00 0.00 45.67 3.61
2310 2370 3.688185 CCTTCACATCTGACACCATCAAG 59.312 47.826 0.00 0.00 36.69 3.02
2311 2371 3.072915 ACCTTCACATCTGACACCATCAA 59.927 43.478 0.00 0.00 36.69 2.57
2312 2372 2.639347 ACCTTCACATCTGACACCATCA 59.361 45.455 0.00 0.00 35.45 3.07
2313 2373 3.340814 ACCTTCACATCTGACACCATC 57.659 47.619 0.00 0.00 0.00 3.51
2314 2374 4.908601 TTACCTTCACATCTGACACCAT 57.091 40.909 0.00 0.00 0.00 3.55
2315 2375 4.620567 CGATTACCTTCACATCTGACACCA 60.621 45.833 0.00 0.00 0.00 4.17
2316 2376 3.865745 CGATTACCTTCACATCTGACACC 59.134 47.826 0.00 0.00 0.00 4.16
2317 2377 4.744570 TCGATTACCTTCACATCTGACAC 58.255 43.478 0.00 0.00 0.00 3.67
2318 2378 5.351458 CATCGATTACCTTCACATCTGACA 58.649 41.667 0.00 0.00 0.00 3.58
2319 2379 4.747108 CCATCGATTACCTTCACATCTGAC 59.253 45.833 0.00 0.00 0.00 3.51
2320 2380 4.740634 GCCATCGATTACCTTCACATCTGA 60.741 45.833 0.00 0.00 0.00 3.27
2321 2381 3.496130 GCCATCGATTACCTTCACATCTG 59.504 47.826 0.00 0.00 0.00 2.90
2322 2382 3.733337 GCCATCGATTACCTTCACATCT 58.267 45.455 0.00 0.00 0.00 2.90
2323 2383 2.476619 CGCCATCGATTACCTTCACATC 59.523 50.000 0.00 0.00 38.10 3.06
2324 2384 2.158957 ACGCCATCGATTACCTTCACAT 60.159 45.455 0.00 0.00 39.41 3.21
2325 2385 1.206132 ACGCCATCGATTACCTTCACA 59.794 47.619 0.00 0.00 39.41 3.58
2326 2386 1.859080 GACGCCATCGATTACCTTCAC 59.141 52.381 0.00 0.00 39.41 3.18
2327 2387 2.218953 GACGCCATCGATTACCTTCA 57.781 50.000 0.00 0.00 39.41 3.02
2338 2398 3.982372 TTGACGGAGCGACGCCATC 62.982 63.158 17.79 8.49 37.37 3.51
2339 2399 3.583276 TTTGACGGAGCGACGCCAT 62.583 57.895 17.79 0.00 37.37 4.40
2340 2400 4.287781 TTTGACGGAGCGACGCCA 62.288 61.111 17.79 3.64 37.37 5.69
2341 2401 3.479269 CTTTGACGGAGCGACGCC 61.479 66.667 17.79 8.03 37.37 5.68
2342 2402 0.524816 TATCTTTGACGGAGCGACGC 60.525 55.000 13.03 13.03 37.37 5.19
2343 2403 1.189403 GTATCTTTGACGGAGCGACG 58.811 55.000 1.52 1.52 40.31 5.12
2344 2404 2.273370 TGTATCTTTGACGGAGCGAC 57.727 50.000 0.00 0.00 0.00 5.19
2345 2405 3.520290 ATTGTATCTTTGACGGAGCGA 57.480 42.857 0.00 0.00 0.00 4.93
2346 2406 4.745125 ACATATTGTATCTTTGACGGAGCG 59.255 41.667 0.00 0.00 0.00 5.03
2347 2407 6.257849 TCAACATATTGTATCTTTGACGGAGC 59.742 38.462 0.00 0.00 37.11 4.70
2348 2408 7.770801 TCAACATATTGTATCTTTGACGGAG 57.229 36.000 0.00 0.00 37.11 4.63
2349 2409 7.254761 GCATCAACATATTGTATCTTTGACGGA 60.255 37.037 0.00 0.00 37.11 4.69
2350 2410 6.852853 GCATCAACATATTGTATCTTTGACGG 59.147 38.462 0.00 0.00 37.11 4.79
2351 2411 7.408910 TGCATCAACATATTGTATCTTTGACG 58.591 34.615 0.00 0.00 37.11 4.35
2352 2412 9.740239 AATGCATCAACATATTGTATCTTTGAC 57.260 29.630 0.00 0.00 37.11 3.18
2361 2421 8.742777 ACACTCTAAAATGCATCAACATATTGT 58.257 29.630 0.00 0.00 37.11 2.71
2364 2424 9.836864 TCTACACTCTAAAATGCATCAACATAT 57.163 29.630 0.00 0.00 0.00 1.78
2365 2425 9.836864 ATCTACACTCTAAAATGCATCAACATA 57.163 29.630 0.00 0.00 0.00 2.29
2366 2426 8.743085 ATCTACACTCTAAAATGCATCAACAT 57.257 30.769 0.00 0.00 0.00 2.71
2367 2427 8.565896 AATCTACACTCTAAAATGCATCAACA 57.434 30.769 0.00 0.00 0.00 3.33
2368 2428 8.668353 TGAATCTACACTCTAAAATGCATCAAC 58.332 33.333 0.00 0.00 0.00 3.18
2369 2429 8.791327 TGAATCTACACTCTAAAATGCATCAA 57.209 30.769 0.00 0.00 0.00 2.57
2370 2430 8.969260 ATGAATCTACACTCTAAAATGCATCA 57.031 30.769 0.00 0.00 0.00 3.07
2371 2431 9.875675 GAATGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
2372 2432 9.399797 TGAATGAATCTACACTCTAAAATGCAT 57.600 29.630 0.00 0.00 0.00 3.96
2373 2433 8.791327 TGAATGAATCTACACTCTAAAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
2379 2439 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2380 2440 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
2381 2441 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
2382 2442 8.857216 CAAAGCAAAATGAATGAATCTACACTC 58.143 33.333 0.00 0.00 0.00 3.51
2383 2443 8.362639 ACAAAGCAAAATGAATGAATCTACACT 58.637 29.630 0.00 0.00 0.00 3.55
2384 2444 8.430063 CACAAAGCAAAATGAATGAATCTACAC 58.570 33.333 0.00 0.00 0.00 2.90
2385 2445 8.143193 ACACAAAGCAAAATGAATGAATCTACA 58.857 29.630 0.00 0.00 0.00 2.74
2386 2446 8.430063 CACACAAAGCAAAATGAATGAATCTAC 58.570 33.333 0.00 0.00 0.00 2.59
2387 2447 8.143193 ACACACAAAGCAAAATGAATGAATCTA 58.857 29.630 0.00 0.00 0.00 1.98
2388 2448 6.987992 ACACACAAAGCAAAATGAATGAATCT 59.012 30.769 0.00 0.00 0.00 2.40
2389 2449 7.181143 ACACACAAAGCAAAATGAATGAATC 57.819 32.000 0.00 0.00 0.00 2.52
2390 2450 7.927629 ACTACACACAAAGCAAAATGAATGAAT 59.072 29.630 0.00 0.00 0.00 2.57
2391 2451 7.264221 ACTACACACAAAGCAAAATGAATGAA 58.736 30.769 0.00 0.00 0.00 2.57
2392 2452 6.804677 ACTACACACAAAGCAAAATGAATGA 58.195 32.000 0.00 0.00 0.00 2.57
2393 2453 6.919662 AGACTACACACAAAGCAAAATGAATG 59.080 34.615 0.00 0.00 0.00 2.67
2394 2454 7.042797 AGACTACACACAAAGCAAAATGAAT 57.957 32.000 0.00 0.00 0.00 2.57
2395 2455 6.449635 AGACTACACACAAAGCAAAATGAA 57.550 33.333 0.00 0.00 0.00 2.57
2396 2456 7.744087 ATAGACTACACACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
2397 2457 8.721478 ACTATAGACTACACACAAAGCAAAATG 58.279 33.333 6.78 0.00 0.00 2.32
2398 2458 8.721478 CACTATAGACTACACACAAAGCAAAAT 58.279 33.333 6.78 0.00 0.00 1.82
2399 2459 7.172532 CCACTATAGACTACACACAAAGCAAAA 59.827 37.037 6.78 0.00 0.00 2.44
2400 2460 6.649141 CCACTATAGACTACACACAAAGCAAA 59.351 38.462 6.78 0.00 0.00 3.68
2401 2461 6.014925 TCCACTATAGACTACACACAAAGCAA 60.015 38.462 6.78 0.00 0.00 3.91
2402 2462 5.479027 TCCACTATAGACTACACACAAAGCA 59.521 40.000 6.78 0.00 0.00 3.91
2403 2463 5.962433 TCCACTATAGACTACACACAAAGC 58.038 41.667 6.78 0.00 0.00 3.51
2404 2464 8.470805 AGATTCCACTATAGACTACACACAAAG 58.529 37.037 6.78 0.00 0.00 2.77
2405 2465 8.362464 AGATTCCACTATAGACTACACACAAA 57.638 34.615 6.78 0.00 0.00 2.83
2406 2466 7.834681 AGAGATTCCACTATAGACTACACACAA 59.165 37.037 6.78 0.00 0.00 3.33
2407 2467 7.347252 AGAGATTCCACTATAGACTACACACA 58.653 38.462 6.78 0.00 0.00 3.72
2408 2468 7.811117 AGAGATTCCACTATAGACTACACAC 57.189 40.000 6.78 0.00 0.00 3.82
2409 2469 8.935741 TCTAGAGATTCCACTATAGACTACACA 58.064 37.037 6.78 0.00 36.31 3.72
2410 2470 9.781633 TTCTAGAGATTCCACTATAGACTACAC 57.218 37.037 6.78 0.00 39.41 2.90
2414 2474 9.569122 GTCTTTCTAGAGATTCCACTATAGACT 57.431 37.037 6.78 0.00 39.41 3.24
2415 2475 9.569122 AGTCTTTCTAGAGATTCCACTATAGAC 57.431 37.037 6.78 0.00 39.41 2.59
2418 2478 8.634444 GCAAGTCTTTCTAGAGATTCCACTATA 58.366 37.037 0.00 0.00 0.00 1.31
2419 2479 7.124901 TGCAAGTCTTTCTAGAGATTCCACTAT 59.875 37.037 0.00 0.00 0.00 2.12
2420 2480 6.437477 TGCAAGTCTTTCTAGAGATTCCACTA 59.563 38.462 0.00 0.00 0.00 2.74
2421 2481 5.247110 TGCAAGTCTTTCTAGAGATTCCACT 59.753 40.000 0.00 0.00 0.00 4.00
2422 2482 5.482908 TGCAAGTCTTTCTAGAGATTCCAC 58.517 41.667 0.00 0.00 0.00 4.02
2423 2483 5.745312 TGCAAGTCTTTCTAGAGATTCCA 57.255 39.130 0.00 0.00 0.00 3.53
2424 2484 5.461737 CGATGCAAGTCTTTCTAGAGATTCC 59.538 44.000 0.00 0.00 0.00 3.01
2425 2485 6.269315 TCGATGCAAGTCTTTCTAGAGATTC 58.731 40.000 0.00 0.00 0.00 2.52
2426 2486 6.214191 TCGATGCAAGTCTTTCTAGAGATT 57.786 37.500 0.00 0.00 0.00 2.40
2427 2487 5.221224 CCTCGATGCAAGTCTTTCTAGAGAT 60.221 44.000 0.00 0.00 0.00 2.75
2428 2488 4.097135 CCTCGATGCAAGTCTTTCTAGAGA 59.903 45.833 0.00 0.00 0.00 3.10
2429 2489 4.358851 CCTCGATGCAAGTCTTTCTAGAG 58.641 47.826 0.00 0.00 0.00 2.43
2430 2490 3.131223 CCCTCGATGCAAGTCTTTCTAGA 59.869 47.826 0.00 0.00 0.00 2.43
2431 2491 3.131223 TCCCTCGATGCAAGTCTTTCTAG 59.869 47.826 0.00 0.00 0.00 2.43
2432 2492 3.096852 TCCCTCGATGCAAGTCTTTCTA 58.903 45.455 0.00 0.00 0.00 2.10
2433 2493 1.902508 TCCCTCGATGCAAGTCTTTCT 59.097 47.619 0.00 0.00 0.00 2.52
2434 2494 2.275318 CTCCCTCGATGCAAGTCTTTC 58.725 52.381 0.00 0.00 0.00 2.62
2435 2495 1.625818 ACTCCCTCGATGCAAGTCTTT 59.374 47.619 0.00 0.00 0.00 2.52
2436 2496 1.270907 ACTCCCTCGATGCAAGTCTT 58.729 50.000 0.00 0.00 0.00 3.01
2437 2497 2.145397 TACTCCCTCGATGCAAGTCT 57.855 50.000 0.00 0.00 0.00 3.24
2438 2498 2.930682 GTTTACTCCCTCGATGCAAGTC 59.069 50.000 0.00 0.00 0.00 3.01
2439 2499 2.301870 TGTTTACTCCCTCGATGCAAGT 59.698 45.455 0.00 0.00 0.00 3.16
2440 2500 2.972625 TGTTTACTCCCTCGATGCAAG 58.027 47.619 0.00 0.00 0.00 4.01
2441 2501 3.410631 TTGTTTACTCCCTCGATGCAA 57.589 42.857 0.00 0.00 0.00 4.08
2442 2502 3.627395 ATTGTTTACTCCCTCGATGCA 57.373 42.857 0.00 0.00 0.00 3.96
2443 2503 3.938963 TCAATTGTTTACTCCCTCGATGC 59.061 43.478 5.13 0.00 0.00 3.91
2444 2504 6.238484 GGATTCAATTGTTTACTCCCTCGATG 60.238 42.308 5.13 0.00 0.00 3.84
2445 2505 5.823045 GGATTCAATTGTTTACTCCCTCGAT 59.177 40.000 5.13 0.00 0.00 3.59
2446 2506 5.183228 GGATTCAATTGTTTACTCCCTCGA 58.817 41.667 5.13 0.00 0.00 4.04
2447 2507 4.034048 CGGATTCAATTGTTTACTCCCTCG 59.966 45.833 5.13 0.00 0.00 4.63
2448 2508 4.201920 GCGGATTCAATTGTTTACTCCCTC 60.202 45.833 5.13 0.00 0.00 4.30
2449 2509 3.694566 GCGGATTCAATTGTTTACTCCCT 59.305 43.478 5.13 0.00 0.00 4.20
2450 2510 3.694566 AGCGGATTCAATTGTTTACTCCC 59.305 43.478 5.13 0.00 0.00 4.30
2451 2511 4.201920 GGAGCGGATTCAATTGTTTACTCC 60.202 45.833 5.13 11.21 33.81 3.85
2452 2512 4.201920 GGGAGCGGATTCAATTGTTTACTC 60.202 45.833 5.13 6.41 0.00 2.59
2453 2513 3.694566 GGGAGCGGATTCAATTGTTTACT 59.305 43.478 5.13 0.00 0.00 2.24
2454 2514 3.181490 GGGGAGCGGATTCAATTGTTTAC 60.181 47.826 5.13 0.00 0.00 2.01
2500 2560 1.394917 CAGACGTCAATTAGTGGCTGC 59.605 52.381 19.50 0.00 0.00 5.25
2535 2595 7.043722 GCATTAACAAACAAAGTCATCGTTTCA 60.044 33.333 0.00 0.00 30.66 2.69
2536 2596 7.167468 AGCATTAACAAACAAAGTCATCGTTTC 59.833 33.333 0.00 0.00 30.66 2.78
2537 2597 6.978080 AGCATTAACAAACAAAGTCATCGTTT 59.022 30.769 0.00 0.00 33.24 3.60
2563 2629 2.496070 TCCCTGGTAGAATCTGTTGTCG 59.504 50.000 0.00 0.00 0.00 4.35
2685 2751 6.612247 TTGTTTGAGCAGAAAGTCGATTAA 57.388 33.333 0.00 0.00 0.00 1.40
2726 2792 1.005867 TTTAACGCGGCCGAAGAGT 60.006 52.632 33.48 19.49 38.29 3.24
2877 2958 1.153449 TTCATCATCCACGGCGTCC 60.153 57.895 10.85 0.00 0.00 4.79
3007 3091 2.216898 GCCCTCTTATGATCTGCACAC 58.783 52.381 0.00 0.00 0.00 3.82
3112 3196 2.017049 CCAACACCGGAATCTTGATCC 58.983 52.381 9.46 0.00 0.00 3.36
3206 3290 1.376037 CCTCACGTTGGGAAGCTCC 60.376 63.158 0.00 0.00 35.23 4.70
3213 3297 0.537188 ATGTAGAGCCTCACGTTGGG 59.463 55.000 6.50 3.17 0.00 4.12
3358 3442 0.804156 GCTCCTCGTTAGCTCACTGC 60.804 60.000 0.00 0.00 43.29 4.40
3422 3507 7.768240 TGCTCTAATCGTGTAAAGACAGATTA 58.232 34.615 0.00 0.00 36.13 1.75
3558 3646 0.039798 ACGTACGATGTTGCACGAGT 60.040 50.000 24.41 0.00 37.80 4.18
3562 3651 1.625616 AGCTACGTACGATGTTGCAC 58.374 50.000 24.41 2.19 38.11 4.57
3673 3972 0.831711 GGGAAAGGCAAAGGCAAGGA 60.832 55.000 0.00 0.00 43.71 3.36
3811 4128 1.591703 GAGTGGTCTGCGTCATGGA 59.408 57.895 0.00 0.00 0.00 3.41
3984 4304 1.026718 GGATTCAAGTGGAGGCGGTG 61.027 60.000 0.00 0.00 0.00 4.94
4031 4351 0.683504 ATCCGAACAGTAGAGGCGGT 60.684 55.000 0.00 0.00 42.40 5.68
4181 4508 3.587933 GGAGGATCTCGTCGCGCT 61.588 66.667 5.56 0.00 33.73 5.92
4200 4527 0.748005 CTGGCGATCGAATTTGGGGT 60.748 55.000 21.57 0.00 0.00 4.95
4213 4554 2.107041 ATCCGTTGTCCAACTGGCGA 62.107 55.000 8.40 0.10 39.08 5.54
4298 4640 0.105039 CCCGAGGAGTAGATGGTTGC 59.895 60.000 0.00 0.00 0.00 4.17
4308 4650 3.710722 CTTGCAGCCCCGAGGAGT 61.711 66.667 0.00 0.00 33.47 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.