Multiple sequence alignment - TraesCS1D01G261800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G261800 chr1D 100.000 4176 0 0 1 4176 355700082 355695907 0.000000e+00 7712.0
1 TraesCS1D01G261800 chr1B 94.862 2822 76 37 684 3469 478584312 478581524 0.000000e+00 4344.0
2 TraesCS1D01G261800 chr1B 94.349 637 11 7 3465 4094 478580063 478579445 0.000000e+00 953.0
3 TraesCS1D01G261800 chr1B 88.598 649 23 7 1 613 478584932 478584299 0.000000e+00 741.0
4 TraesCS1D01G261800 chr1B 96.875 64 2 0 609 672 155913693 155913756 1.590000e-19 108.0
5 TraesCS1D01G261800 chr1A 93.582 1714 64 21 680 2354 456324175 456322469 0.000000e+00 2514.0
6 TraesCS1D01G261800 chr1A 92.665 1595 44 22 2464 4011 456322106 456320538 0.000000e+00 2230.0
7 TraesCS1D01G261800 chr1A 96.439 337 10 1 277 613 456324492 456324158 4.720000e-154 555.0
8 TraesCS1D01G261800 chr1A 83.946 299 10 5 1 274 456325049 456324764 6.930000e-63 252.0
9 TraesCS1D01G261800 chr1A 99.206 126 1 0 3997 4122 456318962 456318837 1.170000e-55 228.0
10 TraesCS1D01G261800 chr1A 94.286 70 3 1 610 678 25538910 25538979 5.710000e-19 106.0
11 TraesCS1D01G261800 chr3B 92.776 263 15 4 1496 1756 675281921 675281661 1.100000e-100 377.0
12 TraesCS1D01G261800 chr3B 91.429 175 14 1 1252 1426 675282185 675282012 5.400000e-59 239.0
13 TraesCS1D01G261800 chr3B 78.988 257 38 15 1491 1741 678548536 678548782 1.200000e-35 161.0
14 TraesCS1D01G261800 chr3D 92.395 263 16 4 1496 1756 512707435 512707175 5.100000e-99 372.0
15 TraesCS1D01G261800 chr3D 91.429 175 14 1 1252 1426 512707699 512707526 5.400000e-59 239.0
16 TraesCS1D01G261800 chr3D 93.056 72 5 0 610 681 299692407 299692336 5.710000e-19 106.0
17 TraesCS1D01G261800 chr3D 93.056 72 5 0 610 681 485179643 485179572 5.710000e-19 106.0
18 TraesCS1D01G261800 chr3D 94.203 69 4 0 610 678 552510071 552510139 5.710000e-19 106.0
19 TraesCS1D01G261800 chr3D 89.831 59 5 1 4119 4176 20560771 20560829 1.610000e-09 75.0
20 TraesCS1D01G261800 chr3A 92.395 263 16 4 1496 1756 648311910 648311650 5.100000e-99 372.0
21 TraesCS1D01G261800 chr3A 90.857 175 15 1 1252 1426 648312177 648312004 2.510000e-57 233.0
22 TraesCS1D01G261800 chr7D 88.400 250 26 2 1494 1740 401093670 401093421 8.780000e-77 298.0
23 TraesCS1D01G261800 chr7D 90.476 147 14 0 1282 1428 401094022 401093876 1.180000e-45 195.0
24 TraesCS1D01G261800 chr7D 89.831 59 5 1 4119 4176 30266849 30266907 1.610000e-09 75.0
25 TraesCS1D01G261800 chr7D 77.305 141 22 9 1281 1416 34151675 34151540 1.610000e-09 75.0
26 TraesCS1D01G261800 chr7A 88.446 251 24 4 1494 1740 458934574 458934325 8.780000e-77 298.0
27 TraesCS1D01G261800 chr7A 90.476 147 14 0 1282 1428 458934922 458934776 1.180000e-45 195.0
28 TraesCS1D01G261800 chr7B 87.600 250 28 2 1494 1740 410620577 410620328 1.900000e-73 287.0
29 TraesCS1D01G261800 chr7B 89.796 147 15 0 1282 1428 410620930 410620784 5.510000e-44 189.0
30 TraesCS1D01G261800 chr7B 90.909 55 5 0 4122 4176 203031985 203031931 1.610000e-09 75.0
31 TraesCS1D01G261800 chr4D 76.151 239 47 6 1510 1740 485764233 485763997 2.640000e-22 117.0
32 TraesCS1D01G261800 chr4A 94.203 69 4 0 610 678 592528987 592529055 5.710000e-19 106.0
33 TraesCS1D01G261800 chr4A 94.203 69 4 0 610 678 592815333 592815401 5.710000e-19 106.0
34 TraesCS1D01G261800 chr2B 93.151 73 4 1 609 681 528489851 528489922 5.710000e-19 106.0
35 TraesCS1D01G261800 chr2B 90.000 80 7 1 609 688 212028528 212028606 7.390000e-18 102.0
36 TraesCS1D01G261800 chr5A 94.545 55 3 0 4122 4176 464428987 464428933 7.440000e-13 86.1
37 TraesCS1D01G261800 chr5A 91.379 58 5 0 4119 4176 51798098 51798155 3.460000e-11 80.5
38 TraesCS1D01G261800 chr5D 91.379 58 5 0 4119 4176 538628688 538628745 3.460000e-11 80.5
39 TraesCS1D01G261800 chr5D 89.655 58 6 0 4119 4176 133865965 133866022 1.610000e-09 75.0
40 TraesCS1D01G261800 chrUn 90.909 55 5 0 4122 4176 349884060 349884006 1.610000e-09 75.0
41 TraesCS1D01G261800 chr6A 89.655 58 6 0 4119 4176 27077165 27077222 1.610000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G261800 chr1D 355695907 355700082 4175 True 7712.000000 7712 100.0000 1 4176 1 chr1D.!!$R1 4175
1 TraesCS1D01G261800 chr1B 478579445 478584932 5487 True 2012.666667 4344 92.6030 1 4094 3 chr1B.!!$R1 4093
2 TraesCS1D01G261800 chr1A 456318837 456325049 6212 True 1155.800000 2514 93.1676 1 4122 5 chr1A.!!$R1 4121
3 TraesCS1D01G261800 chr3B 675281661 675282185 524 True 308.000000 377 92.1025 1252 1756 2 chr3B.!!$R1 504
4 TraesCS1D01G261800 chr3D 512707175 512707699 524 True 305.500000 372 91.9120 1252 1756 2 chr3D.!!$R3 504
5 TraesCS1D01G261800 chr3A 648311650 648312177 527 True 302.500000 372 91.6260 1252 1756 2 chr3A.!!$R1 504
6 TraesCS1D01G261800 chr7D 401093421 401094022 601 True 246.500000 298 89.4380 1282 1740 2 chr7D.!!$R2 458
7 TraesCS1D01G261800 chr7A 458934325 458934922 597 True 246.500000 298 89.4610 1282 1740 2 chr7A.!!$R1 458
8 TraesCS1D01G261800 chr7B 410620328 410620930 602 True 238.000000 287 88.6980 1282 1740 2 chr7B.!!$R2 458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 209 0.104304 CCGGCCGGCCTATCATATAC 59.896 60.000 41.01 12.95 0.00 1.47 F
658 953 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01 F
659 954 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85 F
666 961 0.165944 ATGAGCGCTTGCGTTTGTAC 59.834 50.000 13.26 0.00 45.69 2.90 F
667 962 0.878523 TGAGCGCTTGCGTTTGTACT 60.879 50.000 13.26 3.73 45.69 2.73 F
1433 1751 0.960286 GAGCTCCCCGGTACATAGTC 59.040 60.000 0.87 0.00 0.00 2.59 F
3024 3801 1.538876 CCACTTCCTCCCCTCACCA 60.539 63.158 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1587 0.037326 GCATCACCAGGTCGTTCTCA 60.037 55.000 0.00 0.0 0.00 3.27 R
1480 1857 1.761784 TGCTGCCAACACCAAGAAATT 59.238 42.857 0.00 0.0 0.00 1.82 R
1840 2315 1.771255 AGAGATGAGGAATTTCCGGGG 59.229 52.381 9.77 0.0 42.75 5.73 R
2325 2800 2.777459 ACTAGCTAGGTGGCATAGGT 57.223 50.000 24.35 5.3 35.31 3.08 R
2439 3201 3.129638 CACCCTTTGTCGAAAAACCAAGA 59.870 43.478 0.00 0.0 0.00 3.02 R
3167 3944 1.211703 TGCAACCTCCTGTCAACAAGA 59.788 47.619 0.00 0.0 0.00 3.02 R
4149 8020 0.397114 AAATGAGGATTTCCCCCGGC 60.397 55.000 0.00 0.0 36.42 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 162 2.346803 AGTGTCCATCCACGAAAATCG 58.653 47.619 0.00 0.00 46.93 3.34
148 174 3.788434 CGAAAATCGTGTAGCACAGTT 57.212 42.857 0.14 0.00 34.72 3.16
183 209 0.104304 CCGGCCGGCCTATCATATAC 59.896 60.000 41.01 12.95 0.00 1.47
184 210 1.112113 CGGCCGGCCTATCATATACT 58.888 55.000 41.01 0.00 0.00 2.12
185 211 1.067212 CGGCCGGCCTATCATATACTC 59.933 57.143 41.01 12.17 0.00 2.59
186 212 1.413077 GGCCGGCCTATCATATACTCC 59.587 57.143 38.76 5.95 0.00 3.85
187 213 2.108168 GCCGGCCTATCATATACTCCA 58.892 52.381 18.11 0.00 0.00 3.86
188 214 2.159085 GCCGGCCTATCATATACTCCAC 60.159 54.545 18.11 0.00 0.00 4.02
189 215 3.366396 CCGGCCTATCATATACTCCACT 58.634 50.000 0.00 0.00 0.00 4.00
190 216 4.533815 CCGGCCTATCATATACTCCACTA 58.466 47.826 0.00 0.00 0.00 2.74
191 217 5.141182 CCGGCCTATCATATACTCCACTAT 58.859 45.833 0.00 0.00 0.00 2.12
192 218 5.010112 CCGGCCTATCATATACTCCACTATG 59.990 48.000 0.00 0.00 0.00 2.23
193 219 5.828328 CGGCCTATCATATACTCCACTATGA 59.172 44.000 0.00 0.00 38.39 2.15
194 220 6.321435 CGGCCTATCATATACTCCACTATGAA 59.679 42.308 0.00 0.00 37.76 2.57
195 221 7.014711 CGGCCTATCATATACTCCACTATGAAT 59.985 40.741 0.00 0.00 37.76 2.57
196 222 8.709308 GGCCTATCATATACTCCACTATGAATT 58.291 37.037 0.00 0.00 37.76 2.17
201 227 8.621532 TCATATACTCCACTATGAATTTTGCC 57.378 34.615 0.00 0.00 32.77 4.52
247 273 1.071699 TCCTTCAACTCAAAGGACCCG 59.928 52.381 0.51 0.00 45.74 5.28
257 283 2.841881 TCAAAGGACCCGGCTAGTTAAT 59.158 45.455 0.00 0.00 0.00 1.40
346 641 1.527736 CGTGACGGCTCTAGCTACTAG 59.472 57.143 0.00 0.00 41.70 2.57
436 731 2.163815 TCTGTCGACCTAGCTAAAGCAC 59.836 50.000 14.12 0.00 45.16 4.40
555 850 9.751542 TTCAATTACCACGTTGATACAATTTTT 57.248 25.926 0.00 0.00 34.60 1.94
598 893 6.332735 ACTTTCCACATTCCTTCTAAAAGC 57.667 37.500 0.00 0.00 0.00 3.51
599 894 6.071320 ACTTTCCACATTCCTTCTAAAAGCT 58.929 36.000 0.00 0.00 0.00 3.74
600 895 7.231467 ACTTTCCACATTCCTTCTAAAAGCTA 58.769 34.615 0.00 0.00 0.00 3.32
601 896 7.175119 ACTTTCCACATTCCTTCTAAAAGCTAC 59.825 37.037 0.00 0.00 0.00 3.58
602 897 6.121776 TCCACATTCCTTCTAAAAGCTACA 57.878 37.500 0.00 0.00 0.00 2.74
603 898 6.173339 TCCACATTCCTTCTAAAAGCTACAG 58.827 40.000 0.00 0.00 0.00 2.74
604 899 5.940470 CCACATTCCTTCTAAAAGCTACAGT 59.060 40.000 0.00 0.00 0.00 3.55
605 900 6.431234 CCACATTCCTTCTAAAAGCTACAGTT 59.569 38.462 0.00 0.00 0.00 3.16
606 901 7.606456 CCACATTCCTTCTAAAAGCTACAGTTA 59.394 37.037 0.00 0.00 0.00 2.24
607 902 8.999431 CACATTCCTTCTAAAAGCTACAGTTAA 58.001 33.333 0.00 0.00 0.00 2.01
608 903 9.740710 ACATTCCTTCTAAAAGCTACAGTTAAT 57.259 29.630 0.00 0.00 0.00 1.40
609 904 9.994432 CATTCCTTCTAAAAGCTACAGTTAATG 57.006 33.333 0.00 0.00 0.00 1.90
610 905 9.740710 ATTCCTTCTAAAAGCTACAGTTAATGT 57.259 29.630 0.00 0.00 46.45 2.71
611 906 8.547967 TCCTTCTAAAAGCTACAGTTAATGTG 57.452 34.615 0.00 0.00 43.80 3.21
612 907 8.154856 TCCTTCTAAAAGCTACAGTTAATGTGT 58.845 33.333 0.00 0.00 43.80 3.72
613 908 8.230486 CCTTCTAAAAGCTACAGTTAATGTGTG 58.770 37.037 0.00 0.00 43.80 3.82
614 909 8.671384 TTCTAAAAGCTACAGTTAATGTGTGT 57.329 30.769 0.00 0.00 43.80 3.72
615 910 8.083462 TCTAAAAGCTACAGTTAATGTGTGTG 57.917 34.615 0.00 0.00 43.80 3.82
616 911 4.749245 AAGCTACAGTTAATGTGTGTGC 57.251 40.909 0.00 7.68 43.80 4.57
617 912 2.736721 AGCTACAGTTAATGTGTGTGCG 59.263 45.455 0.00 0.00 43.80 5.34
618 913 2.478894 GCTACAGTTAATGTGTGTGCGT 59.521 45.455 0.00 0.00 43.80 5.24
619 914 3.059188 GCTACAGTTAATGTGTGTGCGTT 60.059 43.478 0.00 0.00 43.80 4.84
620 915 3.602390 ACAGTTAATGTGTGTGCGTTC 57.398 42.857 0.00 0.00 41.91 3.95
621 916 2.939756 ACAGTTAATGTGTGTGCGTTCA 59.060 40.909 0.00 0.00 41.91 3.18
622 917 3.563808 ACAGTTAATGTGTGTGCGTTCAT 59.436 39.130 0.00 0.00 41.91 2.57
623 918 4.752604 ACAGTTAATGTGTGTGCGTTCATA 59.247 37.500 0.00 0.00 41.91 2.15
624 919 5.107104 ACAGTTAATGTGTGTGCGTTCATAG 60.107 40.000 0.00 0.00 41.91 2.23
625 920 4.391830 AGTTAATGTGTGTGCGTTCATAGG 59.608 41.667 0.00 0.00 0.00 2.57
626 921 1.737838 ATGTGTGTGCGTTCATAGGG 58.262 50.000 0.00 0.00 0.00 3.53
627 922 0.321210 TGTGTGTGCGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
628 923 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
629 924 1.066716 GTGTGTGCGTTCATAGGGGTA 60.067 52.381 0.00 0.00 0.00 3.69
630 925 1.624312 TGTGTGCGTTCATAGGGGTAA 59.376 47.619 0.00 0.00 0.00 2.85
631 926 2.038689 TGTGTGCGTTCATAGGGGTAAA 59.961 45.455 0.00 0.00 0.00 2.01
632 927 3.275999 GTGTGCGTTCATAGGGGTAAAT 58.724 45.455 0.00 0.00 0.00 1.40
633 928 3.064820 GTGTGCGTTCATAGGGGTAAATG 59.935 47.826 0.00 0.00 0.00 2.32
634 929 3.275999 GTGCGTTCATAGGGGTAAATGT 58.724 45.455 0.00 0.00 0.00 2.71
635 930 4.081031 TGTGCGTTCATAGGGGTAAATGTA 60.081 41.667 0.00 0.00 0.00 2.29
636 931 5.061179 GTGCGTTCATAGGGGTAAATGTAT 58.939 41.667 0.00 0.00 0.00 2.29
637 932 5.049680 GTGCGTTCATAGGGGTAAATGTATG 60.050 44.000 0.00 0.00 0.00 2.39
638 933 4.083484 GCGTTCATAGGGGTAAATGTATGC 60.083 45.833 0.00 0.00 0.00 3.14
639 934 4.151689 CGTTCATAGGGGTAAATGTATGCG 59.848 45.833 0.00 0.00 0.00 4.73
640 935 3.670625 TCATAGGGGTAAATGTATGCGC 58.329 45.455 0.00 0.00 0.00 6.09
641 936 2.157834 TAGGGGTAAATGTATGCGCG 57.842 50.000 0.00 0.00 0.00 6.86
642 937 0.179468 AGGGGTAAATGTATGCGCGT 59.821 50.000 8.43 7.55 0.00 6.01
643 938 0.306533 GGGGTAAATGTATGCGCGTG 59.693 55.000 13.61 0.00 0.00 5.34
644 939 1.011333 GGGTAAATGTATGCGCGTGT 58.989 50.000 13.61 0.00 0.00 4.49
645 940 2.203401 GGGTAAATGTATGCGCGTGTA 58.797 47.619 13.61 0.62 0.00 2.90
646 941 2.803956 GGGTAAATGTATGCGCGTGTAT 59.196 45.455 13.61 4.63 0.00 2.29
647 942 3.989167 GGGTAAATGTATGCGCGTGTATA 59.011 43.478 13.61 2.40 0.00 1.47
648 943 4.628333 GGGTAAATGTATGCGCGTGTATAT 59.372 41.667 13.61 2.11 0.00 0.86
649 944 5.445407 GGGTAAATGTATGCGCGTGTATATG 60.445 44.000 13.61 0.00 0.00 1.78
650 945 5.346551 GGTAAATGTATGCGCGTGTATATGA 59.653 40.000 13.61 1.21 0.00 2.15
651 946 5.515548 AAATGTATGCGCGTGTATATGAG 57.484 39.130 13.61 0.00 0.00 2.90
652 947 2.324860 TGTATGCGCGTGTATATGAGC 58.675 47.619 13.61 0.41 38.85 4.26
655 950 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
656 951 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
657 952 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
658 953 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
659 954 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
660 955 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
661 956 1.593006 GTGTATATGAGCGCTTGCGTT 59.407 47.619 13.26 10.61 45.69 4.84
662 957 2.030457 GTGTATATGAGCGCTTGCGTTT 59.970 45.455 13.26 0.00 45.69 3.60
663 958 2.030335 TGTATATGAGCGCTTGCGTTTG 59.970 45.455 13.26 0.00 45.69 2.93
664 959 1.086696 ATATGAGCGCTTGCGTTTGT 58.913 45.000 13.26 6.11 45.69 2.83
665 960 1.715993 TATGAGCGCTTGCGTTTGTA 58.284 45.000 13.26 5.22 45.69 2.41
666 961 0.165944 ATGAGCGCTTGCGTTTGTAC 59.834 50.000 13.26 0.00 45.69 2.90
667 962 0.878523 TGAGCGCTTGCGTTTGTACT 60.879 50.000 13.26 3.73 45.69 2.73
668 963 1.065358 GAGCGCTTGCGTTTGTACTA 58.935 50.000 13.26 0.00 45.69 1.82
669 964 1.659098 GAGCGCTTGCGTTTGTACTAT 59.341 47.619 13.26 0.00 45.69 2.12
670 965 1.393539 AGCGCTTGCGTTTGTACTATG 59.606 47.619 16.38 0.00 45.69 2.23
671 966 1.127951 GCGCTTGCGTTTGTACTATGT 59.872 47.619 16.38 0.00 0.00 2.29
672 967 2.412325 GCGCTTGCGTTTGTACTATGTT 60.412 45.455 16.38 0.00 0.00 2.71
673 968 3.805823 CGCTTGCGTTTGTACTATGTTT 58.194 40.909 6.86 0.00 0.00 2.83
674 969 4.667161 GCGCTTGCGTTTGTACTATGTTTA 60.667 41.667 16.38 0.00 0.00 2.01
675 970 5.375717 CGCTTGCGTTTGTACTATGTTTAA 58.624 37.500 6.86 0.00 0.00 1.52
676 971 5.846994 CGCTTGCGTTTGTACTATGTTTAAA 59.153 36.000 6.86 0.00 0.00 1.52
677 972 6.357503 CGCTTGCGTTTGTACTATGTTTAAAA 59.642 34.615 6.86 0.00 0.00 1.52
678 973 7.407871 CGCTTGCGTTTGTACTATGTTTAAAAG 60.408 37.037 6.86 0.00 0.00 2.27
679 974 7.588488 GCTTGCGTTTGTACTATGTTTAAAAGA 59.412 33.333 0.00 0.00 0.00 2.52
680 975 9.440784 CTTGCGTTTGTACTATGTTTAAAAGAA 57.559 29.630 0.00 0.00 0.00 2.52
681 976 8.996988 TGCGTTTGTACTATGTTTAAAAGAAG 57.003 30.769 0.00 0.00 0.00 2.85
682 977 7.588488 TGCGTTTGTACTATGTTTAAAAGAAGC 59.412 33.333 0.00 0.00 0.00 3.86
771 1066 7.274033 CCGGCATGATTTAAGCAATTATACATG 59.726 37.037 0.00 0.00 36.65 3.21
942 1252 6.389906 GGTTCAATCAAAACTAACCAGGATG 58.610 40.000 0.00 0.00 39.51 3.51
1126 1444 3.267974 GCTATGCGGGCAATAGGC 58.732 61.111 0.00 0.00 43.74 3.93
1228 1546 4.410400 GGGAAGTGGGTGGCGAGG 62.410 72.222 0.00 0.00 0.00 4.63
1433 1751 0.960286 GAGCTCCCCGGTACATAGTC 59.040 60.000 0.87 0.00 0.00 2.59
1439 1757 3.225104 TCCCCGGTACATAGTCATACAC 58.775 50.000 0.00 0.00 0.00 2.90
1459 1786 2.073056 CACACATACAGCACCGCTTAA 58.927 47.619 0.00 0.00 36.40 1.85
1460 1787 2.073816 ACACATACAGCACCGCTTAAC 58.926 47.619 0.00 0.00 36.40 2.01
1461 1788 2.289444 ACACATACAGCACCGCTTAACT 60.289 45.455 0.00 0.00 36.40 2.24
1480 1857 7.093945 GCTTAACTCAAATTGGGGTCTTGATTA 60.094 37.037 0.00 0.00 0.00 1.75
1840 2315 3.418684 TTTGGAGGCCAGACTTAAGAC 57.581 47.619 10.09 2.62 33.81 3.01
1886 2361 7.824672 TGATTGGTTTTTGTTTTGCAAATTCT 58.175 26.923 13.65 0.00 45.38 2.40
2089 2564 7.003482 TGGCATACATATGGACATGTACAAAT 58.997 34.615 16.35 1.51 42.58 2.32
2194 2669 2.159653 GCATGTCCAAGCTAAACAGTCG 60.160 50.000 0.00 0.00 0.00 4.18
2201 2676 3.997021 CCAAGCTAAACAGTCGATTCAGT 59.003 43.478 0.00 0.00 0.00 3.41
2267 2742 3.920231 AATTCCATCTCACAGCTAGCA 57.080 42.857 18.83 0.00 0.00 3.49
2325 2800 4.756642 CAGTCCTCACTCAATTTACTGCAA 59.243 41.667 0.00 0.00 0.00 4.08
2349 2824 4.959210 CCTATGCCACCTAGCTAGTATCAT 59.041 45.833 19.31 16.63 0.00 2.45
2380 3141 6.106673 ACTCGTGTAAGATCTTTGGTATTGG 58.893 40.000 14.36 1.05 0.00 3.16
2407 3168 9.683069 CAGTAATTTCTTTAGCTTTGACATGTT 57.317 29.630 0.00 0.00 0.00 2.71
2606 3368 2.328099 CCTCCAGCAACGTCCAAGC 61.328 63.158 0.00 0.00 0.00 4.01
2607 3369 2.664851 TCCAGCAACGTCCAAGCG 60.665 61.111 0.00 0.00 37.94 4.68
3024 3801 1.538876 CCACTTCCTCCCCTCACCA 60.539 63.158 0.00 0.00 0.00 4.17
3047 3824 3.059386 GTCGCAAATTCCGCCCCA 61.059 61.111 0.00 0.00 0.00 4.96
3167 3944 4.649218 ACTCCAAAACCAAGTAAATGCAGT 59.351 37.500 0.00 0.00 0.00 4.40
3176 3953 5.215160 CCAAGTAAATGCAGTCTTGTTGAC 58.785 41.667 12.73 0.00 45.67 3.18
3473 5736 4.228210 TGATCACCCAAAATCTAAGCCTCT 59.772 41.667 0.00 0.00 0.00 3.69
3493 5756 0.523519 GGCAGGCAGTTGTTTCTAGC 59.476 55.000 0.00 0.00 0.00 3.42
3495 5758 1.815003 GCAGGCAGTTGTTTCTAGCAT 59.185 47.619 0.00 0.00 0.00 3.79
3606 5880 3.365291 CTTGCAGGCGCGGTAGGTA 62.365 63.158 8.83 0.00 42.97 3.08
3607 5881 3.652539 TTGCAGGCGCGGTAGGTAC 62.653 63.158 8.83 0.00 42.97 3.34
3609 5883 3.818787 CAGGCGCGGTAGGTACGT 61.819 66.667 8.83 0.00 0.00 3.57
3632 5906 4.202223 TGTCAGATAAGGCGAGGATTAACC 60.202 45.833 0.00 0.00 39.35 2.85
3732 6006 3.245087 TGGCTGCAAAAGGTAAGGATACA 60.245 43.478 0.50 0.00 41.41 2.29
3891 6166 3.019564 AGACAATCTACTGGCAAATGGC 58.980 45.455 0.00 0.00 43.74 4.40
3910 6185 5.314923 TGGCGTAAAGACTAGTTCGTAAT 57.685 39.130 0.00 0.00 0.00 1.89
4122 7993 4.082245 ACCGGAGCCATTAGAAAACAATTG 60.082 41.667 9.46 3.24 0.00 2.32
4123 7994 4.423732 CGGAGCCATTAGAAAACAATTGG 58.576 43.478 10.83 0.00 0.00 3.16
4124 7995 4.183865 GGAGCCATTAGAAAACAATTGGC 58.816 43.478 10.83 3.60 41.12 4.52
4125 7996 4.183865 GAGCCATTAGAAAACAATTGGCC 58.816 43.478 10.83 0.00 41.68 5.36
4126 7997 2.929398 GCCATTAGAAAACAATTGGCCG 59.071 45.455 10.83 0.00 35.36 6.13
4127 7998 2.929398 CCATTAGAAAACAATTGGCCGC 59.071 45.455 10.83 0.00 0.00 6.53
4128 7999 3.583806 CATTAGAAAACAATTGGCCGCA 58.416 40.909 10.83 0.00 0.00 5.69
4129 8000 3.951775 TTAGAAAACAATTGGCCGCAT 57.048 38.095 10.83 0.00 0.00 4.73
4130 8001 2.083167 AGAAAACAATTGGCCGCATG 57.917 45.000 10.83 0.00 0.00 4.06
4131 8002 0.443478 GAAAACAATTGGCCGCATGC 59.557 50.000 7.91 7.91 40.16 4.06
4132 8003 0.250209 AAAACAATTGGCCGCATGCA 60.250 45.000 19.57 0.00 43.89 3.96
4133 8004 0.036199 AAACAATTGGCCGCATGCAT 60.036 45.000 19.57 0.00 43.89 3.96
4134 8005 0.460635 AACAATTGGCCGCATGCATC 60.461 50.000 19.57 8.10 43.89 3.91
4135 8006 1.324740 ACAATTGGCCGCATGCATCT 61.325 50.000 19.57 0.00 43.89 2.90
4136 8007 0.596600 CAATTGGCCGCATGCATCTC 60.597 55.000 19.57 4.47 43.89 2.75
4137 8008 0.754217 AATTGGCCGCATGCATCTCT 60.754 50.000 19.57 0.00 43.89 3.10
4138 8009 1.170919 ATTGGCCGCATGCATCTCTC 61.171 55.000 19.57 1.17 43.89 3.20
4139 8010 2.976903 GGCCGCATGCATCTCTCC 60.977 66.667 19.57 4.90 43.89 3.71
4140 8011 3.344215 GCCGCATGCATCTCTCCG 61.344 66.667 19.57 0.00 40.77 4.63
4141 8012 2.418777 CCGCATGCATCTCTCCGA 59.581 61.111 19.57 0.00 0.00 4.55
4142 8013 1.005275 CCGCATGCATCTCTCCGAT 60.005 57.895 19.57 0.00 0.00 4.18
4149 8020 3.890145 CATCTCTCCGATGCAGAGG 57.110 57.895 3.99 3.99 42.75 3.69
4150 8021 0.319727 CATCTCTCCGATGCAGAGGC 60.320 60.000 5.43 0.00 42.75 4.70
4151 8022 1.470996 ATCTCTCCGATGCAGAGGCC 61.471 60.000 0.00 0.00 38.39 5.19
4152 8023 3.496875 CTCTCCGATGCAGAGGCCG 62.497 68.421 0.00 0.42 40.13 6.13
4153 8024 4.598894 CTCCGATGCAGAGGCCGG 62.599 72.222 0.00 0.00 43.53 6.13
4160 8031 4.129148 GCAGAGGCCGGGGGAAAT 62.129 66.667 2.18 0.00 0.00 2.17
4161 8032 2.193248 CAGAGGCCGGGGGAAATC 59.807 66.667 2.18 0.00 0.00 2.17
4162 8033 3.097162 AGAGGCCGGGGGAAATCC 61.097 66.667 2.18 0.00 0.00 3.01
4163 8034 3.097162 GAGGCCGGGGGAAATCCT 61.097 66.667 2.18 0.00 35.95 3.24
4164 8035 3.097162 AGGCCGGGGGAAATCCTC 61.097 66.667 2.18 0.00 35.95 3.71
4165 8036 3.416880 GGCCGGGGGAAATCCTCA 61.417 66.667 2.18 0.00 38.61 3.86
4166 8037 2.768022 GGCCGGGGGAAATCCTCAT 61.768 63.158 2.18 0.00 38.61 2.90
4167 8038 1.230212 GCCGGGGGAAATCCTCATT 59.770 57.895 2.18 0.00 38.61 2.57
4168 8039 0.397114 GCCGGGGGAAATCCTCATTT 60.397 55.000 2.18 0.00 38.61 2.32
4169 8040 1.964830 GCCGGGGGAAATCCTCATTTT 60.965 52.381 2.18 0.00 38.61 1.82
4170 8041 2.031870 CCGGGGGAAATCCTCATTTTC 58.968 52.381 0.99 0.00 38.61 2.29
4171 8042 2.622977 CCGGGGGAAATCCTCATTTTCA 60.623 50.000 0.99 0.00 38.61 2.69
4172 8043 3.096092 CGGGGGAAATCCTCATTTTCAA 58.904 45.455 0.99 0.00 38.61 2.69
4173 8044 3.513515 CGGGGGAAATCCTCATTTTCAAA 59.486 43.478 0.99 0.00 38.61 2.69
4174 8045 4.020662 CGGGGGAAATCCTCATTTTCAAAA 60.021 41.667 0.99 0.00 38.61 2.44
4175 8046 5.512232 CGGGGGAAATCCTCATTTTCAAAAA 60.512 40.000 0.99 0.00 38.61 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 162 5.458015 GGATAAAACCAAACTGTGCTACAC 58.542 41.667 0.00 0.00 34.56 2.90
139 165 4.730966 TGGGATAAAACCAAACTGTGCTA 58.269 39.130 0.00 0.00 34.44 3.49
183 209 5.649782 ACAAGGCAAAATTCATAGTGGAG 57.350 39.130 0.00 0.00 0.00 3.86
184 210 6.222389 CAAACAAGGCAAAATTCATAGTGGA 58.778 36.000 0.00 0.00 0.00 4.02
185 211 5.409214 CCAAACAAGGCAAAATTCATAGTGG 59.591 40.000 0.00 0.00 0.00 4.00
186 212 6.470557 CCAAACAAGGCAAAATTCATAGTG 57.529 37.500 0.00 0.00 0.00 2.74
200 226 3.432933 CGGATGAATTTTGCCAAACAAGG 59.567 43.478 0.00 0.00 40.06 3.61
201 227 4.305769 TCGGATGAATTTTGCCAAACAAG 58.694 39.130 0.00 0.00 40.06 3.16
436 731 1.887854 TGATGTGATGTGTGCCTTTGG 59.112 47.619 0.00 0.00 0.00 3.28
473 768 4.290942 AGGAGAATACAAGGGACTAGGTG 58.709 47.826 0.00 0.00 38.49 4.00
598 893 4.210328 TGAACGCACACACATTAACTGTAG 59.790 41.667 0.00 0.00 35.91 2.74
599 894 4.120589 TGAACGCACACACATTAACTGTA 58.879 39.130 0.00 0.00 35.91 2.74
600 895 2.939756 TGAACGCACACACATTAACTGT 59.060 40.909 0.00 0.00 39.20 3.55
601 896 3.600717 TGAACGCACACACATTAACTG 57.399 42.857 0.00 0.00 0.00 3.16
602 897 4.391830 CCTATGAACGCACACACATTAACT 59.608 41.667 0.00 0.00 0.00 2.24
603 898 4.436852 CCCTATGAACGCACACACATTAAC 60.437 45.833 0.00 0.00 0.00 2.01
604 899 3.687212 CCCTATGAACGCACACACATTAA 59.313 43.478 0.00 0.00 0.00 1.40
605 900 3.266636 CCCTATGAACGCACACACATTA 58.733 45.455 0.00 0.00 0.00 1.90
606 901 2.083774 CCCTATGAACGCACACACATT 58.916 47.619 0.00 0.00 0.00 2.71
607 902 1.678728 CCCCTATGAACGCACACACAT 60.679 52.381 0.00 0.00 0.00 3.21
608 903 0.321210 CCCCTATGAACGCACACACA 60.321 55.000 0.00 0.00 0.00 3.72
609 904 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
610 905 1.268066 TACCCCTATGAACGCACACA 58.732 50.000 0.00 0.00 0.00 3.72
611 906 2.389962 TTACCCCTATGAACGCACAC 57.610 50.000 0.00 0.00 0.00 3.82
612 907 3.275143 CATTTACCCCTATGAACGCACA 58.725 45.455 0.00 0.00 0.00 4.57
613 908 3.275999 ACATTTACCCCTATGAACGCAC 58.724 45.455 0.00 0.00 0.00 5.34
614 909 3.637911 ACATTTACCCCTATGAACGCA 57.362 42.857 0.00 0.00 0.00 5.24
615 910 4.083484 GCATACATTTACCCCTATGAACGC 60.083 45.833 0.00 0.00 0.00 4.84
616 911 4.151689 CGCATACATTTACCCCTATGAACG 59.848 45.833 0.00 0.00 0.00 3.95
617 912 4.083484 GCGCATACATTTACCCCTATGAAC 60.083 45.833 0.30 0.00 0.00 3.18
618 913 4.069304 GCGCATACATTTACCCCTATGAA 58.931 43.478 0.30 0.00 0.00 2.57
619 914 3.670625 GCGCATACATTTACCCCTATGA 58.329 45.455 0.30 0.00 0.00 2.15
620 915 2.415168 CGCGCATACATTTACCCCTATG 59.585 50.000 8.75 0.00 0.00 2.23
621 916 2.038033 ACGCGCATACATTTACCCCTAT 59.962 45.455 5.73 0.00 0.00 2.57
622 917 1.413445 ACGCGCATACATTTACCCCTA 59.587 47.619 5.73 0.00 0.00 3.53
623 918 0.179468 ACGCGCATACATTTACCCCT 59.821 50.000 5.73 0.00 0.00 4.79
624 919 0.306533 CACGCGCATACATTTACCCC 59.693 55.000 5.73 0.00 0.00 4.95
625 920 1.011333 ACACGCGCATACATTTACCC 58.989 50.000 5.73 0.00 0.00 3.69
626 921 5.346551 TCATATACACGCGCATACATTTACC 59.653 40.000 5.73 0.00 0.00 2.85
627 922 6.384178 TCATATACACGCGCATACATTTAC 57.616 37.500 5.73 0.00 0.00 2.01
628 923 5.061684 GCTCATATACACGCGCATACATTTA 59.938 40.000 5.73 0.00 0.00 1.40
629 924 4.143115 GCTCATATACACGCGCATACATTT 60.143 41.667 5.73 0.00 0.00 2.32
630 925 3.367932 GCTCATATACACGCGCATACATT 59.632 43.478 5.73 0.00 0.00 2.71
631 926 2.923655 GCTCATATACACGCGCATACAT 59.076 45.455 5.73 0.00 0.00 2.29
632 927 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
633 928 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
634 929 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
635 930 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
636 931 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
640 935 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
641 936 1.209128 ACGCAAGCGCTCATATACAC 58.791 50.000 12.06 0.00 44.19 2.90
642 937 1.934589 AACGCAAGCGCTCATATACA 58.065 45.000 12.06 0.00 44.19 2.29
643 938 2.030457 ACAAACGCAAGCGCTCATATAC 59.970 45.455 12.06 0.00 44.19 1.47
644 939 2.276201 ACAAACGCAAGCGCTCATATA 58.724 42.857 12.06 0.00 44.19 0.86
645 940 1.086696 ACAAACGCAAGCGCTCATAT 58.913 45.000 12.06 0.00 44.19 1.78
646 941 1.392168 GTACAAACGCAAGCGCTCATA 59.608 47.619 12.06 0.00 44.19 2.15
647 942 0.165944 GTACAAACGCAAGCGCTCAT 59.834 50.000 12.06 0.00 44.19 2.90
648 943 0.878523 AGTACAAACGCAAGCGCTCA 60.879 50.000 12.06 0.00 44.19 4.26
649 944 1.065358 TAGTACAAACGCAAGCGCTC 58.935 50.000 12.06 0.00 44.19 5.03
650 945 1.393539 CATAGTACAAACGCAAGCGCT 59.606 47.619 15.09 2.64 44.19 5.92
651 946 1.127951 ACATAGTACAAACGCAAGCGC 59.872 47.619 15.09 0.00 44.19 5.92
652 947 3.449322 AACATAGTACAAACGCAAGCG 57.551 42.857 13.50 13.50 46.03 4.68
653 948 7.588488 TCTTTTAAACATAGTACAAACGCAAGC 59.412 33.333 0.00 0.00 45.62 4.01
655 950 9.440784 CTTCTTTTAAACATAGTACAAACGCAA 57.559 29.630 0.00 0.00 0.00 4.85
656 951 7.588488 GCTTCTTTTAAACATAGTACAAACGCA 59.412 33.333 0.00 0.00 0.00 5.24
657 952 7.801783 AGCTTCTTTTAAACATAGTACAAACGC 59.198 33.333 0.00 0.00 0.00 4.84
662 957 9.991906 ACTGTAGCTTCTTTTAAACATAGTACA 57.008 29.630 0.00 0.00 0.00 2.90
771 1066 8.621532 TTTTGTGATATATGATTCCCTACAGC 57.378 34.615 0.00 0.00 0.00 4.40
774 1069 9.574516 ACCTTTTTGTGATATATGATTCCCTAC 57.425 33.333 0.00 0.00 0.00 3.18
838 1136 6.425114 CACTGGCTAGCCTTAATAATACAGTG 59.575 42.308 33.07 26.57 43.76 3.66
841 1139 5.305585 GCACTGGCTAGCCTTAATAATACA 58.694 41.667 33.07 9.07 36.96 2.29
872 1173 3.552875 TGGCTAGTAGCTACTGTAGTGG 58.447 50.000 32.21 16.77 41.99 4.00
942 1252 2.685388 GGAGTGGAGGCTTTGCTTAATC 59.315 50.000 0.00 0.00 0.00 1.75
1162 1480 0.433871 GAAACGCTTCCTTCGTCGAC 59.566 55.000 5.18 5.18 39.48 4.20
1199 1517 0.980231 CACTTCCCCTCCTCCTCCTG 60.980 65.000 0.00 0.00 0.00 3.86
1200 1518 1.394151 CACTTCCCCTCCTCCTCCT 59.606 63.158 0.00 0.00 0.00 3.69
1201 1519 1.690985 CCACTTCCCCTCCTCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
1269 1587 0.037326 GCATCACCAGGTCGTTCTCA 60.037 55.000 0.00 0.00 0.00 3.27
1429 1747 5.407502 GTGCTGTATGTGTGTGTATGACTA 58.592 41.667 0.00 0.00 0.00 2.59
1433 1751 2.348362 CGGTGCTGTATGTGTGTGTATG 59.652 50.000 0.00 0.00 0.00 2.39
1439 1757 1.720805 TAAGCGGTGCTGTATGTGTG 58.279 50.000 0.00 0.00 39.62 3.82
1459 1786 7.797121 AATTAATCAAGACCCCAATTTGAGT 57.203 32.000 0.00 0.00 34.64 3.41
1460 1787 8.534496 AGAAATTAATCAAGACCCCAATTTGAG 58.466 33.333 0.00 0.00 34.64 3.02
1461 1788 8.434589 AGAAATTAATCAAGACCCCAATTTGA 57.565 30.769 0.00 0.00 35.52 2.69
1480 1857 1.761784 TGCTGCCAACACCAAGAAATT 59.238 42.857 0.00 0.00 0.00 1.82
1840 2315 1.771255 AGAGATGAGGAATTTCCGGGG 59.229 52.381 9.77 0.00 42.75 5.73
1886 2361 5.129485 GGCTGATATATAGCTAGCTTCCCAA 59.871 44.000 24.88 4.23 40.92 4.12
2089 2564 6.839124 AATTCTGAATTCAACATGGTAGCA 57.161 33.333 9.88 0.00 0.00 3.49
2194 2669 2.795329 TGAGCAAAGGGGAACTGAATC 58.205 47.619 0.00 0.00 0.00 2.52
2201 2676 5.579047 TCTGAATATTTGAGCAAAGGGGAA 58.421 37.500 1.92 0.00 33.32 3.97
2267 2742 5.416639 TGCATGCTTTTCATATGAAGTGAGT 59.583 36.000 20.33 4.04 35.21 3.41
2325 2800 2.777459 ACTAGCTAGGTGGCATAGGT 57.223 50.000 24.35 5.30 35.31 3.08
2380 3141 7.809806 ACATGTCAAAGCTAAAGAAATTACTGC 59.190 33.333 0.00 0.00 0.00 4.40
2439 3201 3.129638 CACCCTTTGTCGAAAAACCAAGA 59.870 43.478 0.00 0.00 0.00 3.02
2678 3440 2.048597 GTGACATCGGCGTGGACA 60.049 61.111 6.85 4.18 0.00 4.02
2878 3655 1.938657 ATGAGCGAGTACGTGCAGCT 61.939 55.000 21.92 21.92 41.98 4.24
3024 3801 1.995991 CGGAATTTGCGACGACGAT 59.004 52.632 12.29 0.00 42.66 3.73
3047 3824 2.680352 ACACCGGCATCTCTCCGT 60.680 61.111 0.00 0.00 45.09 4.69
3167 3944 1.211703 TGCAACCTCCTGTCAACAAGA 59.788 47.619 0.00 0.00 0.00 3.02
3176 3953 2.545113 GCATATGCAATGCAACCTCCTG 60.545 50.000 22.84 4.98 43.62 3.86
3339 4116 4.803613 TGCTTACAACATCAGTGCTATACG 59.196 41.667 0.00 0.00 0.00 3.06
3340 4117 5.580691 TGTGCTTACAACATCAGTGCTATAC 59.419 40.000 0.00 0.00 0.00 1.47
3473 5736 1.896220 CTAGAAACAACTGCCTGCCA 58.104 50.000 0.00 0.00 0.00 4.92
3493 5756 4.939271 TCATGTGCCATGCAGATTAAATG 58.061 39.130 9.54 0.00 39.52 2.32
3495 5758 5.402997 TTTCATGTGCCATGCAGATTAAA 57.597 34.783 9.54 0.00 39.52 1.52
3606 5880 0.456221 CCTCGCCTTATCTGACACGT 59.544 55.000 0.00 0.00 0.00 4.49
3607 5881 0.738975 TCCTCGCCTTATCTGACACG 59.261 55.000 0.00 0.00 0.00 4.49
3608 5882 3.460857 AATCCTCGCCTTATCTGACAC 57.539 47.619 0.00 0.00 0.00 3.67
3609 5883 4.202223 GGTTAATCCTCGCCTTATCTGACA 60.202 45.833 0.00 0.00 0.00 3.58
3632 5906 0.662619 ATTATTCCATGCACACGCCG 59.337 50.000 0.00 0.00 37.32 6.46
3748 6022 4.615682 CGAACTCTAACCATGCATGCAAAA 60.616 41.667 26.68 0.33 0.00 2.44
3749 6023 3.119884 CGAACTCTAACCATGCATGCAAA 60.120 43.478 26.68 1.26 0.00 3.68
3750 6024 2.419673 CGAACTCTAACCATGCATGCAA 59.580 45.455 26.68 6.66 0.00 4.08
3751 6025 2.009051 CGAACTCTAACCATGCATGCA 58.991 47.619 25.04 25.04 0.00 3.96
3752 6026 2.009774 ACGAACTCTAACCATGCATGC 58.990 47.619 21.69 11.82 0.00 4.06
3753 6027 3.308053 CAGACGAACTCTAACCATGCATG 59.692 47.826 20.19 20.19 0.00 4.06
3754 6028 3.055819 ACAGACGAACTCTAACCATGCAT 60.056 43.478 0.00 0.00 0.00 3.96
3755 6029 2.299013 ACAGACGAACTCTAACCATGCA 59.701 45.455 0.00 0.00 0.00 3.96
3756 6030 2.668457 CACAGACGAACTCTAACCATGC 59.332 50.000 0.00 0.00 0.00 4.06
3757 6031 2.668457 GCACAGACGAACTCTAACCATG 59.332 50.000 0.00 0.00 0.00 3.66
3758 6032 2.563179 AGCACAGACGAACTCTAACCAT 59.437 45.455 0.00 0.00 0.00 3.55
3759 6033 1.961394 AGCACAGACGAACTCTAACCA 59.039 47.619 0.00 0.00 0.00 3.67
3760 6034 2.030185 TCAGCACAGACGAACTCTAACC 60.030 50.000 0.00 0.00 0.00 2.85
3891 6166 9.298113 CAACAAAATTACGAACTAGTCTTTACG 57.702 33.333 0.00 0.60 0.00 3.18
3910 6185 7.705752 CCAGCATGCATGTATATAACAACAAAA 59.294 33.333 26.79 0.00 36.68 2.44
4122 7993 2.976903 GGAGAGATGCATGCGGCC 60.977 66.667 14.09 4.40 43.89 6.13
4123 7994 3.344215 CGGAGAGATGCATGCGGC 61.344 66.667 14.09 7.38 45.13 6.53
4124 7995 1.005275 ATCGGAGAGATGCATGCGG 60.005 57.895 14.09 0.00 43.63 5.69
4125 7996 4.669411 ATCGGAGAGATGCATGCG 57.331 55.556 14.09 0.00 43.63 4.73
4132 8003 1.470996 GGCCTCTGCATCGGAGAGAT 61.471 60.000 13.41 0.00 43.63 2.75
4133 8004 2.130426 GGCCTCTGCATCGGAGAGA 61.130 63.158 13.41 0.00 43.63 3.10
4134 8005 2.420890 GGCCTCTGCATCGGAGAG 59.579 66.667 5.61 5.61 43.63 3.20
4135 8006 3.531207 CGGCCTCTGCATCGGAGA 61.531 66.667 0.00 0.00 39.05 3.71
4136 8007 4.598894 CCGGCCTCTGCATCGGAG 62.599 72.222 0.00 0.20 42.71 4.63
4143 8014 4.129148 ATTTCCCCCGGCCTCTGC 62.129 66.667 0.00 0.00 0.00 4.26
4144 8015 2.193248 GATTTCCCCCGGCCTCTG 59.807 66.667 0.00 0.00 0.00 3.35
4145 8016 3.097162 GGATTTCCCCCGGCCTCT 61.097 66.667 0.00 0.00 0.00 3.69
4146 8017 3.097162 AGGATTTCCCCCGGCCTC 61.097 66.667 0.00 0.00 36.42 4.70
4147 8018 3.097162 GAGGATTTCCCCCGGCCT 61.097 66.667 0.00 0.00 36.42 5.19
4148 8019 2.298335 AATGAGGATTTCCCCCGGCC 62.298 60.000 0.00 0.00 36.42 6.13
4149 8020 0.397114 AAATGAGGATTTCCCCCGGC 60.397 55.000 0.00 0.00 36.42 6.13
4150 8021 2.031870 GAAAATGAGGATTTCCCCCGG 58.968 52.381 0.00 0.00 36.42 5.73
4151 8022 2.733956 TGAAAATGAGGATTTCCCCCG 58.266 47.619 0.00 0.00 36.23 5.73
4152 8023 5.497464 TTTTGAAAATGAGGATTTCCCCC 57.503 39.130 0.00 0.00 36.23 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.