AutoCloner

Multiple sequence alignment - TraesCS1D01G259700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G259700	chr1D	100.000	4840	0	0	1	4840	352540007	352544846	0.000000e+00	8938.0
1	TraesCS1D01G259700	chr1B	92.994	3497	174	30	478	3924	474837739	474834264	0.000000e+00	5035.0
2	TraesCS1D01G259700	chr1B	90.409	636	48	8	3927	4556	474829589	474828961	0.000000e+00	824.0
3	TraesCS1D01G259700	chr1B	94.118	289	16	1	4552	4840	474761416	474761129	5.750000e-119	438.0
4	TraesCS1D01G259700	chr1A	96.025	2868	96	5	796	3645	453072274	453075141	0.000000e+00	4649.0
5	TraesCS1D01G259700	chr1A	92.308	273	16	1	4568	4840	453092021	453092288	2.730000e-102	383.0
6	TraesCS1D01G259700	chr1A	95.133	226	11	0	4270	4495	453091794	453092019	1.660000e-94	357.0
7	TraesCS1D01G259700	chr1A	87.726	277	26	6	3786	4056	453088340	453088614	2.810000e-82	316.0
8	TraesCS1D01G259700	chr1A	93.532	201	12	1	543	743	453072070	453072269	1.020000e-76	298.0
9	TraesCS1D01G259700	chr1A	93.496	123	8	0	3661	3783	453075094	453075216	2.980000e-42	183.0
10	TraesCS1D01G259700	chr1A	100.000	28	0	0	3	30	453066142	453066169	9.000000e-03	52.8
11	TraesCS1D01G259700	chr2B	86.667	450	56	2	39	485	727311369	727310921	3.360000e-136	496.0
12	TraesCS1D01G259700	chr2B	84.464	457	65	3	33	484	396417628	396418083	3.440000e-121	446.0
13	TraesCS1D01G259700	chr2B	91.860	172	14	0	4059	4230	378686942	378686771	1.740000e-59	241.0
14	TraesCS1D01G259700	chr3D	80.488	656	103	17	2679	3314	511535509	511536159	3.390000e-131	479.0
15	TraesCS1D01G259700	chr3D	92.727	165	11	1	4067	4231	612268448	612268611	2.250000e-58	237.0
16	TraesCS1D01G259700	chr6D	85.345	464	60	5	33	491	327725063	327725523	1.580000e-129	473.0
17	TraesCS1D01G259700	chr6D	84.816	461	62	5	33	486	97771298	97770839	1.590000e-124	457.0
18	TraesCS1D01G259700	chr5A	85.281	462	55	11	33	485	654559212	654558755	9.490000e-127	464.0
19	TraesCS1D01G259700	chr2A	84.816	461	58	10	33	485	749525754	749525298	2.050000e-123	453.0
20	TraesCS1D01G259700	chr2A	84.314	459	65	5	33	485	532077590	532077133	4.450000e-120	442.0
21	TraesCS1D01G259700	chr3B	84.130	460	65	7	33	485	694178257	694178715	5.750000e-119	438.0
22	TraesCS1D01G259700	chr4A	86.534	401	47	4	33	427	631809007	631808608	7.440000e-118	435.0
23	TraesCS1D01G259700	chr7A	93.865	163	9	1	4068	4230	691723808	691723647	1.350000e-60	244.0
24	TraesCS1D01G259700	chr7A	84.211	95	15	0	3017	3111	563875406	563875312	5.160000e-15	93.5
25	TraesCS1D01G259700	chr7A	84.043	94	15	0	3017	3110	564241738	564241645	1.860000e-14	91.6
26	TraesCS1D01G259700	chrUn	93.293	164	10	1	4068	4231	141680907	141680745	1.740000e-59	241.0
27	TraesCS1D01G259700	chrUn	88.288	111	13	0	2747	2857	30252804	30252694	3.040000e-27	134.0
28	TraesCS1D01G259700	chr5B	92.814	167	11	1	4065	4231	490757576	490757411	1.740000e-59	241.0
29	TraesCS1D01G259700	chr4D	92.771	166	11	1	4066	4231	437295763	437295927	6.260000e-59	239.0
30	TraesCS1D01G259700	chr4D	91.011	178	13	3	4053	4230	136489515	136489689	2.250000e-58	237.0
31	TraesCS1D01G259700	chr7B	90.909	176	13	3	4056	4230	394828659	394828486	2.910000e-57	233.0
32	TraesCS1D01G259700	chr7D	83.158	95	16	0	3017	3111	498476121	498476027	2.400000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G259700	chr1D	352540007	352544846	4839	False	8938	8938	100.000000	1	4840	1	chr1D.!!$F1	4839
1	TraesCS1D01G259700	chr1B	474834264	474837739	3475	True	5035	5035	92.994000	478	3924	1	chr1B.!!$R3	3446
2	TraesCS1D01G259700	chr1B	474828961	474829589	628	True	824	824	90.409000	3927	4556	1	chr1B.!!$R2	629
3	TraesCS1D01G259700	chr1A	453072070	453075216	3146	False	1710	4649	94.351000	543	3783	3	chr1A.!!$F2	3240
4	TraesCS1D01G259700	chr1A	453088340	453092288	3948	False	352	383	91.722333	3786	4840	3	chr1A.!!$F3	1054
5	TraesCS1D01G259700	chr3D	511535509	511536159	650	False	479	479	80.488000	2679	3314	1	chr3D.!!$F1	635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
762	812	0.032615	TTCAACTTGGCCACCAACCT	60.033	50.0	3.88	0.00	38.75	3.50	F
1070	1153	0.034337	GGGCACAGGTTGTAGACGAA	59.966	55.0	0.00	0.00	0.00	3.85	F
2160	2243	0.250553	ATTCAACCCGCAAAGTCCGA	60.251	50.0	0.00	0.00	0.00	4.55	F
2451	2534	0.317603	ACAGAACGGTGTTCTCGACG	60.318	55.0	9.14	1.91	0.00	5.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2669	2752	1.883926	TCGCTGTACTTGTAGCTCACA	59.116	47.619	0.00	0.00	37.78	3.58	R
2699	2782	2.036387	TCGGTGAAGTTCTTGGTCAGA	58.964	47.619	4.17	0.00	0.00	3.27	R
3605	3721	1.105759	GTACCGGCCGTCCTATGAGT	61.106	60.000	26.12	14.43	0.00	3.41	R
4234	4369	1.008538	GCGTCAGTTGGTTGCTTGG	60.009	57.895	0.00	0.00	0.00	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	7.466805	GGAAATTCAGGCAAATGAAAAATAGC	58.533	34.615	0.00	0.00	42.21	2.97
26	27	7.119553	GGAAATTCAGGCAAATGAAAAATAGCA	59.880	33.333	0.00	0.00	42.21	3.49
27	28	7.982761	AATTCAGGCAAATGAAAAATAGCAA	57.017	28.000	2.84	0.00	42.21	3.91
28	29	7.982761	ATTCAGGCAAATGAAAAATAGCAAA	57.017	28.000	2.84	0.00	42.21	3.68
29	30	6.783892	TCAGGCAAATGAAAAATAGCAAAC	57.216	33.333	0.00	0.00	0.00	2.93
30	31	5.404968	TCAGGCAAATGAAAAATAGCAAACG	59.595	36.000	0.00	0.00	0.00	3.60
31	32	4.152223	AGGCAAATGAAAAATAGCAAACGC	59.848	37.500	0.00	0.00	0.00	4.84
32	33	4.152223	GGCAAATGAAAAATAGCAAACGCT	59.848	37.500	0.00	0.00	43.83	5.07
33	34	5.347364	GGCAAATGAAAAATAGCAAACGCTA	59.653	36.000	0.00	0.00	45.78	4.26
43	44	3.559238	AGCAAACGCTATCTTTGTTGG	57.441	42.857	0.00	0.00	38.21	3.77
44	45	2.228822	AGCAAACGCTATCTTTGTTGGG	59.771	45.455	0.00	0.00	38.21	4.12
45	46	2.227865	GCAAACGCTATCTTTGTTGGGA	59.772	45.455	0.00	0.00	32.18	4.37
46	47	3.670627	GCAAACGCTATCTTTGTTGGGAG	60.671	47.826	0.00	0.00	32.18	4.30
47	48	1.739067	ACGCTATCTTTGTTGGGAGC	58.261	50.000	0.00	0.00	0.00	4.70
48	49	1.279271	ACGCTATCTTTGTTGGGAGCT	59.721	47.619	0.00	0.00	0.00	4.09
49	50	2.290323	ACGCTATCTTTGTTGGGAGCTT	60.290	45.455	0.00	0.00	0.00	3.74
50	51	2.749621	CGCTATCTTTGTTGGGAGCTTT	59.250	45.455	0.00	0.00	0.00	3.51
51	52	3.426695	CGCTATCTTTGTTGGGAGCTTTG	60.427	47.826	0.00	0.00	0.00	2.77
52	53	3.507622	GCTATCTTTGTTGGGAGCTTTGT	59.492	43.478	0.00	0.00	0.00	2.83
53	54	4.616835	GCTATCTTTGTTGGGAGCTTTGTG	60.617	45.833	0.00	0.00	0.00	3.33
54	55	2.733956	TCTTTGTTGGGAGCTTTGTGT	58.266	42.857	0.00	0.00	0.00	3.72
55	56	2.426738	TCTTTGTTGGGAGCTTTGTGTG	59.573	45.455	0.00	0.00	0.00	3.82
56	57	1.846007	TTGTTGGGAGCTTTGTGTGT	58.154	45.000	0.00	0.00	0.00	3.72
57	58	1.102154	TGTTGGGAGCTTTGTGTGTG	58.898	50.000	0.00	0.00	0.00	3.82
58	59	0.385390	GTTGGGAGCTTTGTGTGTGG	59.615	55.000	0.00	0.00	0.00	4.17
59	60	0.257328	TTGGGAGCTTTGTGTGTGGA	59.743	50.000	0.00	0.00	0.00	4.02
60	61	0.179020	TGGGAGCTTTGTGTGTGGAG	60.179	55.000	0.00	0.00	0.00	3.86
61	62	0.108585	GGGAGCTTTGTGTGTGGAGA	59.891	55.000	0.00	0.00	0.00	3.71
62	63	1.230324	GGAGCTTTGTGTGTGGAGAC	58.770	55.000	0.00	0.00	0.00	3.36
63	64	1.475034	GGAGCTTTGTGTGTGGAGACA	60.475	52.381	0.00	0.00	38.70	3.41
64	65	2.498167	GAGCTTTGTGTGTGGAGACAT	58.502	47.619	0.00	0.00	46.14	3.06
65	66	2.224606	AGCTTTGTGTGTGGAGACATG	58.775	47.619	0.00	0.00	46.14	3.21
66	67	1.267806	GCTTTGTGTGTGGAGACATGG	59.732	52.381	0.00	0.00	46.14	3.66
67	68	1.267806	CTTTGTGTGTGGAGACATGGC	59.732	52.381	0.00	0.00	46.14	4.40
68	69	0.473755	TTGTGTGTGGAGACATGGCT	59.526	50.000	0.00	0.00	46.14	4.75
69	70	0.250424	TGTGTGTGGAGACATGGCTG	60.250	55.000	5.31	0.00	46.14	4.85
70	71	0.957395	GTGTGTGGAGACATGGCTGG	60.957	60.000	5.31	0.00	46.14	4.85
71	72	1.377725	GTGTGGAGACATGGCTGGG	60.378	63.158	5.31	0.00	46.14	4.45
72	73	1.847506	TGTGGAGACATGGCTGGGT	60.848	57.895	5.31	0.00	46.14	4.51
73	74	1.078143	GTGGAGACATGGCTGGGTC	60.078	63.158	5.31	0.00	46.14	4.46
74	75	2.300967	TGGAGACATGGCTGGGTCC	61.301	63.158	5.31	0.45	34.58	4.46
75	76	1.997874	GGAGACATGGCTGGGTCCT	60.998	63.158	5.31	0.00	34.58	3.85
76	77	1.566298	GGAGACATGGCTGGGTCCTT	61.566	60.000	5.31	0.00	34.58	3.36
77	78	0.107459	GAGACATGGCTGGGTCCTTC	60.107	60.000	5.31	0.00	34.58	3.46
78	79	0.548682	AGACATGGCTGGGTCCTTCT	60.549	55.000	0.00	0.00	34.58	2.85
79	80	0.329596	GACATGGCTGGGTCCTTCTT	59.670	55.000	0.00	0.00	0.00	2.52
80	81	0.038744	ACATGGCTGGGTCCTTCTTG	59.961	55.000	0.00	0.00	0.00	3.02
81	82	1.000396	ATGGCTGGGTCCTTCTTGC	60.000	57.895	0.00	0.00	0.00	4.01
82	83	1.504275	ATGGCTGGGTCCTTCTTGCT	61.504	55.000	0.00	0.00	0.00	3.91
83	84	1.377856	GGCTGGGTCCTTCTTGCTC	60.378	63.158	0.00	0.00	0.00	4.26
84	85	1.682257	GCTGGGTCCTTCTTGCTCT	59.318	57.895	0.00	0.00	0.00	4.09
85	86	0.392327	GCTGGGTCCTTCTTGCTCTC	60.392	60.000	0.00	0.00	0.00	3.20
86	87	0.251634	CTGGGTCCTTCTTGCTCTCC	59.748	60.000	0.00	0.00	0.00	3.71
87	88	0.178891	TGGGTCCTTCTTGCTCTCCT	60.179	55.000	0.00	0.00	0.00	3.69
88	89	0.539518	GGGTCCTTCTTGCTCTCCTC	59.460	60.000	0.00	0.00	0.00	3.71
89	90	0.539518	GGTCCTTCTTGCTCTCCTCC	59.460	60.000	0.00	0.00	0.00	4.30
90	91	0.174617	GTCCTTCTTGCTCTCCTCCG	59.825	60.000	0.00	0.00	0.00	4.63
91	92	0.972983	TCCTTCTTGCTCTCCTCCGG	60.973	60.000	0.00	0.00	0.00	5.14
92	93	1.261238	CCTTCTTGCTCTCCTCCGGT	61.261	60.000	0.00	0.00	0.00	5.28
93	94	0.108424	CTTCTTGCTCTCCTCCGGTG	60.108	60.000	0.00	0.00	0.00	4.94
94	95	0.832135	TTCTTGCTCTCCTCCGGTGT	60.832	55.000	0.00	0.00	0.00	4.16
95	96	0.832135	TCTTGCTCTCCTCCGGTGTT	60.832	55.000	0.00	0.00	0.00	3.32
96	97	0.390472	CTTGCTCTCCTCCGGTGTTC	60.390	60.000	0.00	0.00	0.00	3.18
97	98	1.118965	TTGCTCTCCTCCGGTGTTCA	61.119	55.000	0.00	0.00	0.00	3.18
98	99	0.904865	TGCTCTCCTCCGGTGTTCAT	60.905	55.000	0.00	0.00	0.00	2.57
99	100	0.179097	GCTCTCCTCCGGTGTTCATC	60.179	60.000	0.00	0.00	0.00	2.92
100	101	0.101399	CTCTCCTCCGGTGTTCATCG	59.899	60.000	0.00	0.00	0.00	3.84
101	102	0.611062	TCTCCTCCGGTGTTCATCGT	60.611	55.000	0.00	0.00	0.00	3.73
102	103	0.246635	CTCCTCCGGTGTTCATCGTT	59.753	55.000	0.00	0.00	0.00	3.85
103	104	0.037697	TCCTCCGGTGTTCATCGTTG	60.038	55.000	0.00	0.00	0.00	4.10
104	105	0.320421	CCTCCGGTGTTCATCGTTGT	60.320	55.000	0.00	0.00	0.00	3.32
105	106	1.068474	CTCCGGTGTTCATCGTTGTC	58.932	55.000	0.00	0.00	0.00	3.18
106	107	0.320073	TCCGGTGTTCATCGTTGTCC	60.320	55.000	0.00	0.00	0.00	4.02
107	108	0.320421	CCGGTGTTCATCGTTGTCCT	60.320	55.000	4.81	0.00	0.00	3.85
108	109	1.508632	CGGTGTTCATCGTTGTCCTT	58.491	50.000	0.00	0.00	0.00	3.36
109	110	1.871039	CGGTGTTCATCGTTGTCCTTT	59.129	47.619	0.00	0.00	0.00	3.11
110	111	2.349438	CGGTGTTCATCGTTGTCCTTTG	60.349	50.000	0.00	0.00	0.00	2.77
111	112	2.616842	GGTGTTCATCGTTGTCCTTTGT	59.383	45.455	0.00	0.00	0.00	2.83
112	113	3.066203	GGTGTTCATCGTTGTCCTTTGTT	59.934	43.478	0.00	0.00	0.00	2.83
113	114	4.035017	GTGTTCATCGTTGTCCTTTGTTG	58.965	43.478	0.00	0.00	0.00	3.33
114	115	3.066064	TGTTCATCGTTGTCCTTTGTTGG	59.934	43.478	0.00	0.00	0.00	3.77
115	116	2.925724	TCATCGTTGTCCTTTGTTGGT	58.074	42.857	0.00	0.00	0.00	3.67
116	117	2.875933	TCATCGTTGTCCTTTGTTGGTC	59.124	45.455	0.00	0.00	0.00	4.02
117	118	1.670791	TCGTTGTCCTTTGTTGGTCC	58.329	50.000	0.00	0.00	0.00	4.46
118	119	1.210967	TCGTTGTCCTTTGTTGGTCCT	59.789	47.619	0.00	0.00	0.00	3.85
119	120	2.435069	TCGTTGTCCTTTGTTGGTCCTA	59.565	45.455	0.00	0.00	0.00	2.94
120	121	3.071892	TCGTTGTCCTTTGTTGGTCCTAT	59.928	43.478	0.00	0.00	0.00	2.57
121	122	3.188460	CGTTGTCCTTTGTTGGTCCTATG	59.812	47.826	0.00	0.00	0.00	2.23
122	123	2.790433	TGTCCTTTGTTGGTCCTATGC	58.210	47.619	0.00	0.00	0.00	3.14
123	124	1.737793	GTCCTTTGTTGGTCCTATGCG	59.262	52.381	0.00	0.00	0.00	4.73
124	125	1.094785	CCTTTGTTGGTCCTATGCGG	58.905	55.000	0.00	0.00	0.00	5.69
125	126	0.451783	CTTTGTTGGTCCTATGCGGC	59.548	55.000	0.00	0.00	0.00	6.53
126	127	1.302383	TTTGTTGGTCCTATGCGGCG	61.302	55.000	0.51	0.51	0.00	6.46
127	128	3.573491	GTTGGTCCTATGCGGCGC	61.573	66.667	27.44	27.44	0.00	6.53
128	129	3.781307	TTGGTCCTATGCGGCGCT	61.781	61.111	33.26	20.09	0.00	5.92
129	130	2.428085	TTGGTCCTATGCGGCGCTA	61.428	57.895	33.26	19.43	0.00	4.26
130	131	1.754380	TTGGTCCTATGCGGCGCTAT	61.754	55.000	33.26	24.47	0.00	2.97
131	132	1.738099	GGTCCTATGCGGCGCTATG	60.738	63.158	33.26	20.51	0.00	2.23
132	133	1.006102	GTCCTATGCGGCGCTATGT	60.006	57.895	33.26	17.80	0.00	2.29
133	134	0.242825	GTCCTATGCGGCGCTATGTA	59.757	55.000	33.26	17.97	0.00	2.29
134	135	0.242825	TCCTATGCGGCGCTATGTAC	59.757	55.000	33.26	1.94	0.00	2.90
135	136	1.071019	CCTATGCGGCGCTATGTACG	61.071	60.000	33.26	13.24	0.00	3.67
142	143	3.798029	CGCTATGTACGCTCGTCG	58.202	61.111	0.00	0.00	45.38	5.12
151	152	2.050351	CGCTCGTCGTTGGTGTCT	60.050	61.111	0.00	0.00	0.00	3.41
152	153	2.081212	CGCTCGTCGTTGGTGTCTC	61.081	63.158	0.00	0.00	0.00	3.36
153	154	1.733399	GCTCGTCGTTGGTGTCTCC	60.733	63.158	0.00	0.00	0.00	3.71
154	155	1.658114	CTCGTCGTTGGTGTCTCCA	59.342	57.895	0.00	0.00	45.60	3.86
166	167	3.228499	GTCTCCAAGACGGGGTTTC	57.772	57.895	0.00	0.00	35.28	2.78
167	168	0.321387	GTCTCCAAGACGGGGTTTCC	60.321	60.000	0.00	0.00	35.28	3.13
180	181	3.109044	GGGTTTCCCTTAGATCGTAGC	57.891	52.381	0.00	0.00	41.34	3.58
181	182	2.433239	GGGTTTCCCTTAGATCGTAGCA	59.567	50.000	0.00	0.00	41.34	3.49
182	183	3.118519	GGGTTTCCCTTAGATCGTAGCAA	60.119	47.826	0.00	0.00	41.34	3.91
183	184	4.120589	GGTTTCCCTTAGATCGTAGCAAG	58.879	47.826	0.00	0.00	0.00	4.01
184	185	4.382793	GGTTTCCCTTAGATCGTAGCAAGT	60.383	45.833	0.00	0.00	0.00	3.16
185	186	4.650754	TTCCCTTAGATCGTAGCAAGTC	57.349	45.455	0.00	0.00	0.00	3.01
186	187	2.957006	TCCCTTAGATCGTAGCAAGTCC	59.043	50.000	0.00	0.00	0.00	3.85
187	188	2.959707	CCCTTAGATCGTAGCAAGTCCT	59.040	50.000	0.00	0.00	0.00	3.85
188	189	3.243569	CCCTTAGATCGTAGCAAGTCCTG	60.244	52.174	0.00	0.00	0.00	3.86
196	197	3.673599	GCAAGTCCTGCCTTCCAC	58.326	61.111	0.00	0.00	46.13	4.02
197	198	1.073897	GCAAGTCCTGCCTTCCACT	59.926	57.895	0.00	0.00	46.13	4.00
198	199	0.538287	GCAAGTCCTGCCTTCCACTT	60.538	55.000	0.00	0.00	46.13	3.16
199	200	1.242076	CAAGTCCTGCCTTCCACTTG	58.758	55.000	0.00	0.00	39.74	3.16
200	201	0.538287	AAGTCCTGCCTTCCACTTGC	60.538	55.000	0.00	0.00	0.00	4.01
201	202	1.973812	GTCCTGCCTTCCACTTGCC	60.974	63.158	0.00	0.00	0.00	4.52
202	203	2.115910	CCTGCCTTCCACTTGCCA	59.884	61.111	0.00	0.00	0.00	4.92
203	204	2.270986	CCTGCCTTCCACTTGCCAC	61.271	63.158	0.00	0.00	0.00	5.01
204	205	1.228367	CTGCCTTCCACTTGCCACT	60.228	57.895	0.00	0.00	0.00	4.00
205	206	0.825010	CTGCCTTCCACTTGCCACTT	60.825	55.000	0.00	0.00	0.00	3.16
206	207	0.823356	TGCCTTCCACTTGCCACTTC	60.823	55.000	0.00	0.00	0.00	3.01
207	208	1.527433	GCCTTCCACTTGCCACTTCC	61.527	60.000	0.00	0.00	0.00	3.46
208	209	0.111253	CCTTCCACTTGCCACTTCCT	59.889	55.000	0.00	0.00	0.00	3.36
209	210	1.528129	CTTCCACTTGCCACTTCCTC	58.472	55.000	0.00	0.00	0.00	3.71
210	211	0.110486	TTCCACTTGCCACTTCCTCC	59.890	55.000	0.00	0.00	0.00	4.30
211	212	0.768221	TCCACTTGCCACTTCCTCCT	60.768	55.000	0.00	0.00	0.00	3.69
212	213	0.984230	CCACTTGCCACTTCCTCCTA	59.016	55.000	0.00	0.00	0.00	2.94
213	214	1.065854	CCACTTGCCACTTCCTCCTAG	60.066	57.143	0.00	0.00	0.00	3.02
214	215	1.065854	CACTTGCCACTTCCTCCTAGG	60.066	57.143	0.82	0.82	36.46	3.02
215	216	0.107459	CTTGCCACTTCCTCCTAGGC	60.107	60.000	2.96	0.00	45.41	3.93
216	217	3.727387	GCCACTTCCTCCTAGGCA	58.273	61.111	2.96	0.00	44.59	4.75
217	218	1.222113	GCCACTTCCTCCTAGGCAC	59.778	63.158	2.96	0.00	44.59	5.01
218	219	1.268283	GCCACTTCCTCCTAGGCACT	61.268	60.000	2.96	0.00	44.59	4.40
219	220	0.827368	CCACTTCCTCCTAGGCACTC	59.173	60.000	2.96	0.00	41.75	3.51
220	221	1.561643	CACTTCCTCCTAGGCACTCA	58.438	55.000	2.96	0.00	41.75	3.41
221	222	1.480137	CACTTCCTCCTAGGCACTCAG	59.520	57.143	2.96	0.00	41.75	3.35
222	223	1.359474	ACTTCCTCCTAGGCACTCAGA	59.641	52.381	2.96	0.00	41.75	3.27
223	224	2.031120	CTTCCTCCTAGGCACTCAGAG	58.969	57.143	2.96	0.00	41.75	3.35
224	225	1.003646	TCCTCCTAGGCACTCAGAGT	58.996	55.000	2.96	0.00	41.75	3.24
226	227	1.110442	CTCCTAGGCACTCAGAGTGG	58.890	60.000	28.35	14.03	46.01	4.00
227	228	0.704664	TCCTAGGCACTCAGAGTGGA	59.295	55.000	28.35	16.01	46.01	4.02
228	229	1.289231	TCCTAGGCACTCAGAGTGGAT	59.711	52.381	28.35	7.69	46.01	3.41
229	230	1.411977	CCTAGGCACTCAGAGTGGATG	59.588	57.143	28.35	7.02	46.01	3.51
230	231	1.411977	CTAGGCACTCAGAGTGGATGG	59.588	57.143	28.35	6.59	46.01	3.51
231	232	0.546267	AGGCACTCAGAGTGGATGGT	60.546	55.000	28.35	0.00	46.01	3.55
232	233	0.392193	GGCACTCAGAGTGGATGGTG	60.392	60.000	28.35	6.07	46.01	4.17
233	234	1.023513	GCACTCAGAGTGGATGGTGC	61.024	60.000	28.35	12.10	46.01	5.01
234	235	0.738762	CACTCAGAGTGGATGGTGCG	60.739	60.000	21.46	0.00	42.35	5.34
235	236	1.812922	CTCAGAGTGGATGGTGCGC	60.813	63.158	0.00	0.00	0.00	6.09
236	237	2.821366	CAGAGTGGATGGTGCGCC	60.821	66.667	10.11	10.11	0.00	6.53
237	238	4.457496	AGAGTGGATGGTGCGCCG	62.457	66.667	12.58	0.00	37.67	6.46
238	239	4.760047	GAGTGGATGGTGCGCCGT	62.760	66.667	11.77	11.77	37.67	5.68
254	255	3.980238	GCCGTCAAGCGATATTCTATG	57.020	47.619	0.00	0.00	44.77	2.23
255	256	2.668457	GCCGTCAAGCGATATTCTATGG	59.332	50.000	0.00	0.00	44.77	2.74
256	257	3.614150	GCCGTCAAGCGATATTCTATGGA	60.614	47.826	0.00	0.00	44.77	3.41
257	258	4.556233	CCGTCAAGCGATATTCTATGGAA	58.444	43.478	0.00	0.00	44.77	3.53
258	259	4.623167	CCGTCAAGCGATATTCTATGGAAG	59.377	45.833	0.00	0.00	44.77	3.46
259	260	5.461526	CGTCAAGCGATATTCTATGGAAGA	58.538	41.667	0.00	0.00	44.77	2.87
260	261	6.096036	CGTCAAGCGATATTCTATGGAAGAT	58.904	40.000	0.00	0.00	44.77	2.40
261	262	6.034363	CGTCAAGCGATATTCTATGGAAGATG	59.966	42.308	3.43	0.00	44.77	2.90
262	263	6.312426	GTCAAGCGATATTCTATGGAAGATGG	59.688	42.308	3.43	3.99	34.07	3.51
263	264	6.014242	TCAAGCGATATTCTATGGAAGATGGT	60.014	38.462	3.43	0.26	34.07	3.55
264	265	5.971763	AGCGATATTCTATGGAAGATGGTC	58.028	41.667	3.43	0.38	34.07	4.02
265	266	5.719085	AGCGATATTCTATGGAAGATGGTCT	59.281	40.000	3.43	2.47	34.07	3.85
266	267	6.212388	AGCGATATTCTATGGAAGATGGTCTT	59.788	38.462	3.43	0.00	39.87	3.01
273	274	3.371087	GAAGATGGTCTTCGGAGGC	57.629	57.895	4.16	0.00	42.78	4.70
274	275	0.528684	GAAGATGGTCTTCGGAGGCG	60.529	60.000	4.16	0.00	42.78	5.52
275	276	1.258445	AAGATGGTCTTCGGAGGCGT	61.258	55.000	0.00	0.00	28.99	5.68
276	277	1.227002	GATGGTCTTCGGAGGCGTC	60.227	63.158	0.00	0.00	0.00	5.19
277	278	2.630592	GATGGTCTTCGGAGGCGTCC	62.631	65.000	15.66	15.66	39.88	4.79
303	304	2.951458	TCGAGACGCGATGTGTGT	59.049	55.556	15.93	0.00	45.59	3.72
308	309	4.750460	ACGCGATGTGTGTCAGTT	57.250	50.000	15.93	0.00	36.26	3.16
309	310	2.225348	ACGCGATGTGTGTCAGTTG	58.775	52.632	15.93	0.00	36.26	3.16
310	311	0.529773	ACGCGATGTGTGTCAGTTGT	60.530	50.000	15.93	0.00	36.26	3.32
311	312	0.111134	CGCGATGTGTGTCAGTTGTG	60.111	55.000	0.00	0.00	0.00	3.33
312	313	1.217001	GCGATGTGTGTCAGTTGTGA	58.783	50.000	0.00	0.00	0.00	3.58
313	314	1.597195	GCGATGTGTGTCAGTTGTGAA	59.403	47.619	0.00	0.00	33.27	3.18
314	315	2.224079	GCGATGTGTGTCAGTTGTGAAT	59.776	45.455	0.00	0.00	33.27	2.57
315	316	3.431912	GCGATGTGTGTCAGTTGTGAATA	59.568	43.478	0.00	0.00	33.27	1.75
316	317	4.093408	GCGATGTGTGTCAGTTGTGAATAT	59.907	41.667	0.00	0.00	33.27	1.28
317	318	5.553721	CGATGTGTGTCAGTTGTGAATATG	58.446	41.667	0.00	0.00	33.27	1.78
318	319	4.747540	TGTGTGTCAGTTGTGAATATGC	57.252	40.909	0.00	0.00	33.27	3.14
319	320	4.388485	TGTGTGTCAGTTGTGAATATGCT	58.612	39.130	0.00	0.00	33.27	3.79
320	321	4.452114	TGTGTGTCAGTTGTGAATATGCTC	59.548	41.667	0.00	0.00	33.27	4.26
321	322	4.692625	GTGTGTCAGTTGTGAATATGCTCT	59.307	41.667	0.00	0.00	33.27	4.09
322	323	5.180117	GTGTGTCAGTTGTGAATATGCTCTT	59.820	40.000	0.00	0.00	33.27	2.85
323	324	5.409520	TGTGTCAGTTGTGAATATGCTCTTC	59.590	40.000	0.00	0.00	33.27	2.87
324	325	5.641209	GTGTCAGTTGTGAATATGCTCTTCT	59.359	40.000	0.00	0.00	33.27	2.85
325	326	5.640783	TGTCAGTTGTGAATATGCTCTTCTG	59.359	40.000	0.00	0.00	33.27	3.02
326	327	5.641209	GTCAGTTGTGAATATGCTCTTCTGT	59.359	40.000	0.00	0.00	33.27	3.41
327	328	5.640783	TCAGTTGTGAATATGCTCTTCTGTG	59.359	40.000	0.00	0.00	0.00	3.66
328	329	5.410746	CAGTTGTGAATATGCTCTTCTGTGT	59.589	40.000	0.00	0.00	0.00	3.72
329	330	6.000219	AGTTGTGAATATGCTCTTCTGTGTT	59.000	36.000	0.00	0.00	0.00	3.32
330	331	5.868043	TGTGAATATGCTCTTCTGTGTTG	57.132	39.130	0.00	0.00	0.00	3.33
331	332	5.308014	TGTGAATATGCTCTTCTGTGTTGT	58.692	37.500	0.00	0.00	0.00	3.32
332	333	6.463360	TGTGAATATGCTCTTCTGTGTTGTA	58.537	36.000	0.00	0.00	0.00	2.41
333	334	6.591448	TGTGAATATGCTCTTCTGTGTTGTAG	59.409	38.462	0.00	0.00	0.00	2.74
334	335	5.582269	TGAATATGCTCTTCTGTGTTGTAGC	59.418	40.000	0.00	0.00	0.00	3.58
335	336	3.692257	ATGCTCTTCTGTGTTGTAGCT	57.308	42.857	0.00	0.00	0.00	3.32
336	337	3.475566	TGCTCTTCTGTGTTGTAGCTT	57.524	42.857	0.00	0.00	0.00	3.74
337	338	3.133691	TGCTCTTCTGTGTTGTAGCTTG	58.866	45.455	0.00	0.00	0.00	4.01
338	339	2.096019	GCTCTTCTGTGTTGTAGCTTGC	60.096	50.000	0.00	0.00	0.00	4.01
339	340	3.397482	CTCTTCTGTGTTGTAGCTTGCT	58.603	45.455	0.00	0.00	0.00	3.91
340	341	3.808728	TCTTCTGTGTTGTAGCTTGCTT	58.191	40.909	0.00	0.00	0.00	3.91
341	342	4.199310	TCTTCTGTGTTGTAGCTTGCTTT	58.801	39.130	0.00	0.00	0.00	3.51
342	343	5.364778	TCTTCTGTGTTGTAGCTTGCTTTA	58.635	37.500	0.00	0.00	0.00	1.85
343	344	5.236478	TCTTCTGTGTTGTAGCTTGCTTTAC	59.764	40.000	0.00	0.00	0.00	2.01
344	345	3.493129	TCTGTGTTGTAGCTTGCTTTACG	59.507	43.478	0.00	0.00	0.00	3.18
345	346	2.546368	TGTGTTGTAGCTTGCTTTACGG	59.454	45.455	0.00	0.00	0.00	4.02
346	347	2.546789	GTGTTGTAGCTTGCTTTACGGT	59.453	45.455	0.00	0.00	0.00	4.83
347	348	2.546368	TGTTGTAGCTTGCTTTACGGTG	59.454	45.455	0.00	0.00	0.00	4.94
348	349	2.536761	TGTAGCTTGCTTTACGGTGT	57.463	45.000	0.00	0.00	0.00	4.16
349	350	2.841215	TGTAGCTTGCTTTACGGTGTT	58.159	42.857	0.00	0.00	0.00	3.32
350	351	2.546368	TGTAGCTTGCTTTACGGTGTTG	59.454	45.455	0.00	0.00	0.00	3.33
351	352	1.675552	AGCTTGCTTTACGGTGTTGT	58.324	45.000	0.00	0.00	0.00	3.32
352	353	1.602377	AGCTTGCTTTACGGTGTTGTC	59.398	47.619	0.00	0.00	0.00	3.18
353	354	1.334689	GCTTGCTTTACGGTGTTGTCC	60.335	52.381	0.00	0.00	0.00	4.02
362	363	2.357327	CGGTGTTGTCCGTCTATGAA	57.643	50.000	0.00	0.00	44.77	2.57
363	364	1.990563	CGGTGTTGTCCGTCTATGAAC	59.009	52.381	0.00	0.00	44.77	3.18
364	365	2.352421	CGGTGTTGTCCGTCTATGAACT	60.352	50.000	0.00	0.00	44.77	3.01
365	366	3.660865	GGTGTTGTCCGTCTATGAACTT	58.339	45.455	0.00	0.00	0.00	2.66
366	367	4.616604	CGGTGTTGTCCGTCTATGAACTTA	60.617	45.833	0.00	0.00	44.77	2.24
367	368	4.863131	GGTGTTGTCCGTCTATGAACTTAG	59.137	45.833	0.00	0.00	0.00	2.18
368	369	5.467705	GTGTTGTCCGTCTATGAACTTAGT	58.532	41.667	0.00	0.00	0.00	2.24
369	370	5.924825	GTGTTGTCCGTCTATGAACTTAGTT	59.075	40.000	0.00	0.00	0.00	2.24
370	371	7.086376	GTGTTGTCCGTCTATGAACTTAGTTA	58.914	38.462	0.00	0.00	0.00	2.24
371	372	7.758528	GTGTTGTCCGTCTATGAACTTAGTTAT	59.241	37.037	0.00	0.00	0.00	1.89
372	373	7.758076	TGTTGTCCGTCTATGAACTTAGTTATG	59.242	37.037	0.00	0.00	0.00	1.90
373	374	7.634671	TGTCCGTCTATGAACTTAGTTATGA	57.365	36.000	0.00	0.00	0.00	2.15
374	375	7.704271	TGTCCGTCTATGAACTTAGTTATGAG	58.296	38.462	0.00	0.00	0.00	2.90
375	376	7.338703	TGTCCGTCTATGAACTTAGTTATGAGT	59.661	37.037	0.00	0.00	0.00	3.41
376	377	7.644551	GTCCGTCTATGAACTTAGTTATGAGTG	59.355	40.741	0.00	0.00	0.00	3.51
377	378	6.918569	CCGTCTATGAACTTAGTTATGAGTGG	59.081	42.308	0.00	0.00	0.00	4.00
378	379	7.416438	CCGTCTATGAACTTAGTTATGAGTGGT	60.416	40.741	0.00	0.00	0.00	4.16
379	380	7.432545	CGTCTATGAACTTAGTTATGAGTGGTG	59.567	40.741	0.00	0.00	0.00	4.17
380	381	7.707035	GTCTATGAACTTAGTTATGAGTGGTGG	59.293	40.741	0.00	0.00	0.00	4.61
381	382	5.160607	TGAACTTAGTTATGAGTGGTGGG	57.839	43.478	0.00	0.00	0.00	4.61
382	383	4.019681	TGAACTTAGTTATGAGTGGTGGGG	60.020	45.833	0.00	0.00	0.00	4.96
383	384	3.527937	ACTTAGTTATGAGTGGTGGGGT	58.472	45.455	0.00	0.00	0.00	4.95
384	385	3.263425	ACTTAGTTATGAGTGGTGGGGTG	59.737	47.826	0.00	0.00	0.00	4.61
385	386	1.742308	AGTTATGAGTGGTGGGGTGT	58.258	50.000	0.00	0.00	0.00	4.16
386	387	1.351017	AGTTATGAGTGGTGGGGTGTG	59.649	52.381	0.00	0.00	0.00	3.82
387	388	1.073284	GTTATGAGTGGTGGGGTGTGT	59.927	52.381	0.00	0.00	0.00	3.72
388	389	0.690192	TATGAGTGGTGGGGTGTGTG	59.310	55.000	0.00	0.00	0.00	3.82
389	390	2.594592	GAGTGGTGGGGTGTGTGC	60.595	66.667	0.00	0.00	0.00	4.57
390	391	3.096495	AGTGGTGGGGTGTGTGCT	61.096	61.111	0.00	0.00	0.00	4.40
391	392	1.764571	GAGTGGTGGGGTGTGTGCTA	61.765	60.000	0.00	0.00	0.00	3.49
392	393	1.133809	AGTGGTGGGGTGTGTGCTAT	61.134	55.000	0.00	0.00	0.00	2.97
393	394	0.960364	GTGGTGGGGTGTGTGCTATG	60.960	60.000	0.00	0.00	0.00	2.23
394	395	2.046285	GGTGGGGTGTGTGCTATGC	61.046	63.158	0.00	0.00	0.00	3.14
395	396	1.002134	GTGGGGTGTGTGCTATGCT	60.002	57.895	0.00	0.00	0.00	3.79
396	397	1.026718	GTGGGGTGTGTGCTATGCTC	61.027	60.000	0.00	0.00	0.00	4.26
397	398	1.299648	GGGGTGTGTGCTATGCTCA	59.700	57.895	0.00	0.00	0.00	4.26
398	399	0.107017	GGGGTGTGTGCTATGCTCAT	60.107	55.000	0.00	0.00	34.62	2.90
399	400	1.683011	GGGGTGTGTGCTATGCTCATT	60.683	52.381	0.00	0.00	34.62	2.57
400	401	1.402968	GGGTGTGTGCTATGCTCATTG	59.597	52.381	0.00	0.00	34.62	2.82
401	402	2.086869	GGTGTGTGCTATGCTCATTGT	58.913	47.619	0.00	0.00	34.62	2.71
402	403	2.489329	GGTGTGTGCTATGCTCATTGTT	59.511	45.455	0.00	0.00	34.62	2.83
403	404	3.426695	GGTGTGTGCTATGCTCATTGTTC	60.427	47.826	0.00	0.00	34.62	3.18
404	405	2.416202	TGTGTGCTATGCTCATTGTTCG	59.584	45.455	0.00	0.00	34.62	3.95
405	406	1.398041	TGTGCTATGCTCATTGTTCGC	59.602	47.619	0.00	0.00	0.00	4.70
406	407	1.398041	GTGCTATGCTCATTGTTCGCA	59.602	47.619	0.00	0.00	38.14	5.10
407	408	1.667212	TGCTATGCTCATTGTTCGCAG	59.333	47.619	0.00	0.00	37.06	5.18
408	409	1.596464	GCTATGCTCATTGTTCGCAGC	60.596	52.381	0.00	0.00	37.06	5.25
409	410	0.652071	TATGCTCATTGTTCGCAGCG	59.348	50.000	9.06	9.06	37.06	5.18
410	411	1.020861	ATGCTCATTGTTCGCAGCGA	61.021	50.000	15.11	15.11	37.06	4.93
411	412	1.059994	GCTCATTGTTCGCAGCGAG	59.940	57.895	18.62	6.10	37.14	5.03
412	413	1.630244	GCTCATTGTTCGCAGCGAGT	61.630	55.000	18.62	2.94	37.14	4.18
413	414	0.094216	CTCATTGTTCGCAGCGAGTG	59.906	55.000	18.62	14.93	37.14	3.51
414	415	0.319469	TCATTGTTCGCAGCGAGTGA	60.319	50.000	18.62	16.84	37.14	3.41
415	416	0.723414	CATTGTTCGCAGCGAGTGAT	59.277	50.000	18.62	10.02	37.14	3.06
416	417	1.926510	CATTGTTCGCAGCGAGTGATA	59.073	47.619	18.62	0.00	37.14	2.15
417	418	1.629013	TTGTTCGCAGCGAGTGATAG	58.371	50.000	18.62	0.00	37.14	2.08
418	419	0.179137	TGTTCGCAGCGAGTGATAGG	60.179	55.000	18.62	0.00	37.14	2.57
419	420	0.179134	GTTCGCAGCGAGTGATAGGT	60.179	55.000	18.62	0.00	37.14	3.08
420	421	0.530744	TTCGCAGCGAGTGATAGGTT	59.469	50.000	18.62	0.00	37.14	3.50
421	422	0.100682	TCGCAGCGAGTGATAGGTTC	59.899	55.000	15.11	0.00	0.00	3.62
422	423	0.101399	CGCAGCGAGTGATAGGTTCT	59.899	55.000	9.98	0.00	0.00	3.01
423	424	1.469940	CGCAGCGAGTGATAGGTTCTT	60.470	52.381	9.98	0.00	0.00	2.52
424	425	2.223502	CGCAGCGAGTGATAGGTTCTTA	60.224	50.000	9.98	0.00	0.00	2.10
425	426	3.551046	CGCAGCGAGTGATAGGTTCTTAT	60.551	47.826	9.98	0.00	0.00	1.73
426	427	4.320275	CGCAGCGAGTGATAGGTTCTTATA	60.320	45.833	9.98	0.00	0.00	0.98
427	428	5.529791	GCAGCGAGTGATAGGTTCTTATAA	58.470	41.667	0.00	0.00	0.00	0.98
428	429	6.159988	GCAGCGAGTGATAGGTTCTTATAAT	58.840	40.000	0.00	0.00	0.00	1.28
429	430	6.647067	GCAGCGAGTGATAGGTTCTTATAATT	59.353	38.462	0.00	0.00	0.00	1.40
430	431	7.171678	GCAGCGAGTGATAGGTTCTTATAATTT	59.828	37.037	0.00	0.00	0.00	1.82
431	432	8.491152	CAGCGAGTGATAGGTTCTTATAATTTG	58.509	37.037	0.00	0.00	0.00	2.32
432	433	8.421784	AGCGAGTGATAGGTTCTTATAATTTGA	58.578	33.333	0.00	0.00	0.00	2.69
433	434	9.042008	GCGAGTGATAGGTTCTTATAATTTGAA	57.958	33.333	0.00	0.00	0.00	2.69
472	473	8.517062	AAAGTTATGGTACGTCTAGACATACT	57.483	34.615	23.96	11.38	31.38	2.12
473	474	7.727331	AGTTATGGTACGTCTAGACATACTC	57.273	40.000	23.96	16.17	31.38	2.59
474	475	7.507829	AGTTATGGTACGTCTAGACATACTCT	58.492	38.462	23.96	15.57	31.38	3.24
475	476	7.441760	AGTTATGGTACGTCTAGACATACTCTG	59.558	40.741	23.96	9.12	31.38	3.35
476	477	5.349061	TGGTACGTCTAGACATACTCTGA	57.651	43.478	23.96	7.53	31.38	3.27
477	478	5.737860	TGGTACGTCTAGACATACTCTGAA	58.262	41.667	23.96	6.89	31.38	3.02
478	479	6.175471	TGGTACGTCTAGACATACTCTGAAA	58.825	40.000	23.96	5.46	31.38	2.69
479	480	6.656270	TGGTACGTCTAGACATACTCTGAAAA	59.344	38.462	23.96	4.06	31.38	2.29
480	481	7.148289	TGGTACGTCTAGACATACTCTGAAAAG	60.148	40.741	23.96	6.56	31.38	2.27
481	482	7.065563	GGTACGTCTAGACATACTCTGAAAAGA	59.934	40.741	23.96	0.00	31.38	2.52
482	483	7.450124	ACGTCTAGACATACTCTGAAAAGAA	57.550	36.000	22.37	0.00	0.00	2.52
483	484	7.883217	ACGTCTAGACATACTCTGAAAAGAAA	58.117	34.615	22.37	0.00	0.00	2.52
484	485	8.358148	ACGTCTAGACATACTCTGAAAAGAAAA	58.642	33.333	22.37	0.00	0.00	2.29
485	486	8.855279	CGTCTAGACATACTCTGAAAAGAAAAG	58.145	37.037	22.37	0.00	0.00	2.27
486	487	8.652463	GTCTAGACATACTCTGAAAAGAAAAGC	58.348	37.037	18.20	0.00	0.00	3.51
487	488	8.367911	TCTAGACATACTCTGAAAAGAAAAGCA	58.632	33.333	0.00	0.00	0.00	3.91
590	591	7.224362	CAGCTGTCTACCTTTGATCAAGAATAG	59.776	40.741	8.41	10.94	33.80	1.73
611	612	0.036388	CACATAGCCCCTGTCAACGT	60.036	55.000	0.00	0.00	0.00	3.99
686	687	2.927553	AAGCGCTGGAATGTTCATTC	57.072	45.000	12.58	14.81	0.00	2.67
687	688	1.825090	AGCGCTGGAATGTTCATTCA	58.175	45.000	10.39	10.74	32.39	2.57
688	689	2.372264	AGCGCTGGAATGTTCATTCAT	58.628	42.857	10.39	3.57	32.39	2.57
689	690	2.357009	AGCGCTGGAATGTTCATTCATC	59.643	45.455	10.39	10.02	32.39	2.92
690	691	2.852143	GCGCTGGAATGTTCATTCATCG	60.852	50.000	21.74	20.02	32.39	3.84
743	793	1.494721	ACACATCCACCCACAGAAGTT	59.505	47.619	0.00	0.00	0.00	2.66
744	794	2.091885	ACACATCCACCCACAGAAGTTT	60.092	45.455	0.00	0.00	0.00	2.66
745	795	2.554032	CACATCCACCCACAGAAGTTTC	59.446	50.000	0.00	0.00	0.00	2.78
746	796	2.174639	ACATCCACCCACAGAAGTTTCA	59.825	45.455	0.00	0.00	0.00	2.69
747	797	3.221771	CATCCACCCACAGAAGTTTCAA	58.778	45.455	0.00	0.00	0.00	2.69
748	798	2.650322	TCCACCCACAGAAGTTTCAAC	58.350	47.619	0.00	0.00	0.00	3.18
749	799	2.241176	TCCACCCACAGAAGTTTCAACT	59.759	45.455	0.00	0.00	42.04	3.16
758	808	1.859302	AAGTTTCAACTTGGCCACCA	58.141	45.000	3.88	0.00	46.80	4.17
759	809	1.859302	AGTTTCAACTTGGCCACCAA	58.141	45.000	3.88	0.00	41.69	3.67
760	810	1.480545	AGTTTCAACTTGGCCACCAAC	59.519	47.619	3.88	2.21	38.75	3.77
761	811	0.827368	TTTCAACTTGGCCACCAACC	59.173	50.000	3.88	0.00	38.75	3.77
762	812	0.032615	TTCAACTTGGCCACCAACCT	60.033	50.000	3.88	0.00	38.75	3.50
763	813	0.467290	TCAACTTGGCCACCAACCTC	60.467	55.000	3.88	0.00	38.75	3.85
764	814	1.152546	AACTTGGCCACCAACCTCC	60.153	57.895	3.88	0.00	38.75	4.30
765	815	2.672996	CTTGGCCACCAACCTCCG	60.673	66.667	3.88	0.00	38.75	4.63
766	816	3.491598	CTTGGCCACCAACCTCCGT	62.492	63.158	3.88	0.00	38.75	4.69
767	817	3.783362	TTGGCCACCAACCTCCGTG	62.783	63.158	3.88	0.00	38.75	4.94
769	819	4.947147	GCCACCAACCTCCGTGCA	62.947	66.667	0.00	0.00	0.00	4.57
770	820	2.034066	CCACCAACCTCCGTGCAT	59.966	61.111	0.00	0.00	0.00	3.96
771	821	2.334946	CCACCAACCTCCGTGCATG	61.335	63.158	0.00	0.00	0.00	4.06
772	822	2.672996	ACCAACCTCCGTGCATGC	60.673	61.111	11.82	11.82	0.00	4.06
773	823	3.443045	CCAACCTCCGTGCATGCC	61.443	66.667	16.68	5.63	0.00	4.40
774	824	2.360350	CAACCTCCGTGCATGCCT	60.360	61.111	16.68	0.00	0.00	4.75
775	825	2.045926	AACCTCCGTGCATGCCTC	60.046	61.111	16.68	7.58	0.00	4.70
776	826	3.628646	AACCTCCGTGCATGCCTCC	62.629	63.158	16.68	1.87	0.00	4.30
777	827	3.790437	CCTCCGTGCATGCCTCCT	61.790	66.667	16.68	0.00	0.00	3.69
778	828	2.270205	CTCCGTGCATGCCTCCTT	59.730	61.111	16.68	0.00	0.00	3.36
779	829	1.817099	CTCCGTGCATGCCTCCTTC	60.817	63.158	16.68	0.00	0.00	3.46
780	830	3.197790	CCGTGCATGCCTCCTTCG	61.198	66.667	16.68	9.89	0.00	3.79
781	831	3.869272	CGTGCATGCCTCCTTCGC	61.869	66.667	16.68	0.00	0.00	4.70
782	832	3.869272	GTGCATGCCTCCTTCGCG	61.869	66.667	16.68	0.00	0.00	5.87
792	842	4.735132	CCTTCGCGCCGTCCTGAA	62.735	66.667	0.00	0.00	0.00	3.02
793	843	2.509336	CTTCGCGCCGTCCTGAAT	60.509	61.111	0.00	0.00	0.00	2.57
794	844	2.047655	TTCGCGCCGTCCTGAATT	60.048	55.556	0.00	0.00	0.00	2.17
873	923	3.433598	CCTCCAGAAACAACAGAACCTGA	60.434	47.826	0.45	0.00	35.18	3.86
965	1018	2.887568	GTGGCTGCGGTCGATCAG	60.888	66.667	0.00	2.26	0.00	2.90
1019	1076	0.808453	TGCGAGTACAAATAGCCGGC	60.808	55.000	21.89	21.89	0.00	6.13
1070	1153	0.034337	GGGCACAGGTTGTAGACGAA	59.966	55.000	0.00	0.00	0.00	3.85
1373	1456	4.814294	GGCAGCTGGTACGTCGGG	62.814	72.222	17.12	0.00	0.00	5.14
1761	1844	2.064581	GGGATGTACGCCCTCCAGT	61.065	63.158	14.65	0.00	42.56	4.00
1956	2039	2.095059	ACGTATAACTTCGCCGTGAACT	60.095	45.455	0.00	0.00	31.87	3.01
2045	2128	2.897823	AGGGATGGAACCTGGTCTAT	57.102	50.000	0.00	0.00	36.85	1.98
2160	2243	0.250553	ATTCAACCCGCAAAGTCCGA	60.251	50.000	0.00	0.00	0.00	4.55
2364	2447	3.367743	AACGCGCGTGTCTAGGGA	61.368	61.111	38.44	0.00	0.00	4.20
2444	2527	4.255301	TGTTCAACTTACAGAACGGTGTT	58.745	39.130	0.00	0.00	45.34	3.32
2451	2534	0.317603	ACAGAACGGTGTTCTCGACG	60.318	55.000	9.14	1.91	0.00	5.12
2544	2627	2.668632	GGGACATCAAGGTCGCCA	59.331	61.111	0.91	0.00	42.87	5.69
2598	2681	0.798776	CGCAGCCATTCTTCTCGTTT	59.201	50.000	0.00	0.00	0.00	3.60
2822	2911	2.047274	CTCCGGCAAGGCGAGAAA	60.047	61.111	17.95	0.00	40.77	2.52
2873	2962	1.300971	CCATCCAGCACGTCAACCTG	61.301	60.000	0.00	0.00	0.00	4.00
2897	2986	1.153409	CATGCTCGGCTTCTGCTCT	60.153	57.895	0.00	0.00	39.59	4.09
2930	3019	0.461961	GGAAGCTGCTGGTCTACGAT	59.538	55.000	1.35	0.00	0.00	3.73
3095	3196	1.153823	CGACGTGAAGCCCGAGAAT	60.154	57.895	0.00	0.00	0.00	2.40
3167	3268	4.065281	CTCGTCGGCCGGGACTTT	62.065	66.667	27.83	0.00	40.44	2.66
3605	3721	2.565834	GGTGCCTCAGTACCTTGAAGTA	59.434	50.000	0.00	0.00	44.81	2.24
3747	3871	4.862902	TCGTAGTACTAGAGCGTATCCT	57.137	45.455	1.87	0.00	0.00	3.24
3751	3875	5.572511	CGTAGTACTAGAGCGTATCCTGTAG	59.427	48.000	1.87	0.00	35.47	2.74
3766	3890	2.758327	TAGTCCGCGCCATGGAGT	60.758	61.111	18.40	13.67	41.93	3.85
3783	3907	4.338379	GGAGTATTCCGGCTGAAACTAT	57.662	45.455	0.00	0.00	36.33	2.12
3784	3908	4.308265	GGAGTATTCCGGCTGAAACTATC	58.692	47.826	0.00	0.00	36.33	2.08
3921	4050	7.599630	AAACATCATGCATAACATTTGAACC	57.400	32.000	0.00	0.00	36.64	3.62
3924	4053	6.814644	ACATCATGCATAACATTTGAACCAAG	59.185	34.615	0.00	0.00	36.64	3.61
3929	4058	4.567959	GCATAACATTTGAACCAAGATGCC	59.432	41.667	0.00	0.00	0.00	4.40
3937	4066	4.589216	TGAACCAAGATGCCTTTCAAAG	57.411	40.909	0.00	0.00	0.00	2.77
3944	4073	4.326504	AGATGCCTTTCAAAGTGGTTTG	57.673	40.909	0.00	0.00	43.96	2.93
3979	4108	7.169476	TGAACAAACATGCATAACATCAACAAG	59.831	33.333	0.00	0.00	36.64	3.16
4017	4147	1.400142	CCAACATCAACACACACACGT	59.600	47.619	0.00	0.00	0.00	4.49
4079	4212	4.445452	TTTATGAACTACTCGCTCCGTT	57.555	40.909	0.00	0.00	0.00	4.44
4080	4213	4.445452	TTATGAACTACTCGCTCCGTTT	57.555	40.909	0.00	0.00	0.00	3.60
4082	4215	1.884579	TGAACTACTCGCTCCGTTTCT	59.115	47.619	0.00	0.00	0.00	2.52
4093	4226	7.263496	ACTCGCTCCGTTTCTAAATATAAGTT	58.737	34.615	0.00	0.00	0.00	2.66
4126	4259	7.925043	AGATTCTACTATGGACTACATACGG	57.075	40.000	0.00	0.00	41.03	4.02
4137	4270	4.508124	GGACTACATACGGAGCAAAATGAG	59.492	45.833	0.00	0.00	0.00	2.90
4145	4278	4.832248	ACGGAGCAAAATGAGTGAATCTA	58.168	39.130	0.00	0.00	0.00	1.98
4147	4280	4.872691	CGGAGCAAAATGAGTGAATCTACT	59.127	41.667	0.00	0.00	0.00	2.57
4148	4281	5.006165	CGGAGCAAAATGAGTGAATCTACTC	59.994	44.000	0.00	0.00	45.71	2.59
4229	4364	6.958192	ACTTACATTTAGGAACTGAGGGAGTA	59.042	38.462	0.00	0.00	41.52	2.59
4233	4368	5.541258	TTTAGGAACTGAGGGAGTAGGTA	57.459	43.478	0.00	0.00	41.52	3.08
4234	4369	3.385314	AGGAACTGAGGGAGTAGGTAC	57.615	52.381	0.00	0.00	37.18	3.34
4235	4370	2.024177	AGGAACTGAGGGAGTAGGTACC	60.024	54.545	2.73	2.73	37.18	3.34
4236	4371	2.292061	GGAACTGAGGGAGTAGGTACCA	60.292	54.545	15.94	0.00	33.09	3.25
4238	4373	3.103080	ACTGAGGGAGTAGGTACCAAG	57.897	52.381	15.94	0.00	30.86	3.61
4242	4377	1.907255	AGGGAGTAGGTACCAAGCAAC	59.093	52.381	15.94	4.07	0.00	4.17
4266	7543	6.127140	ACCAACTGACGCCTCTTATAACTTAT	60.127	38.462	0.00	0.00	0.00	1.73
4268	7545	5.759963	ACTGACGCCTCTTATAACTTATCG	58.240	41.667	0.00	0.00	0.00	2.92
4426	7703	0.112995	AAGCATGCCTTCCACCAGAA	59.887	50.000	15.66	0.00	0.00	3.02
4456	7733	3.257624	TGTAAGAGAACTTTCCTCCGACC	59.742	47.826	0.00	0.00	37.53	4.79
4503	7781	2.225394	ACCGCTCTGGATCATATACCCT	60.225	50.000	0.00	0.00	42.00	4.34
4556	7834	7.014711	TGTTGTTGAATATTTTAGGGCTCACAA	59.985	33.333	0.00	0.00	0.00	3.33
4557	7835	7.156876	TGTTGAATATTTTAGGGCTCACAAG	57.843	36.000	0.00	0.00	0.00	3.16
4558	7836	6.719370	TGTTGAATATTTTAGGGCTCACAAGT	59.281	34.615	0.00	0.00	0.00	3.16
4559	7837	6.757897	TGAATATTTTAGGGCTCACAAGTG	57.242	37.500	0.00	0.00	0.00	3.16
4560	7838	6.245408	TGAATATTTTAGGGCTCACAAGTGT	58.755	36.000	0.00	0.00	0.00	3.55
4561	7839	6.150976	TGAATATTTTAGGGCTCACAAGTGTG	59.849	38.462	5.02	5.02	46.91	3.82
4562	7840	3.290948	TTTTAGGGCTCACAAGTGTGT	57.709	42.857	11.06	0.00	45.76	3.72
4596	7874	7.564660	TGGGATGTTATATTCATTGCCTTCTTT	59.435	33.333	0.00	0.00	0.00	2.52
4606	7884	2.561478	TGCCTTCTTTAGTCCACACC	57.439	50.000	0.00	0.00	0.00	4.16
4678	7956	0.375106	GTAGCGCCTCTTTGATGCAC	59.625	55.000	2.29	0.00	0.00	4.57
4699	7977	1.004044	CCATGCAGGGTATCCATCTCC	59.996	57.143	9.85	0.00	34.83	3.71
4728	8006	1.453762	CCGTAGTCGATCTGGTCCCC	61.454	65.000	0.00	0.00	39.71	4.81
4765	8043	1.731720	GCTTTTGCTCCTCGATGACT	58.268	50.000	0.00	0.00	43.35	3.41
4768	8046	0.737367	TTTGCTCCTCGATGACTGCG	60.737	55.000	0.00	0.00	0.00	5.18
4778	8056	0.671781	GATGACTGCGACCAAGCACT	60.672	55.000	0.00	0.00	42.92	4.40
4779	8057	0.250467	ATGACTGCGACCAAGCACTT	60.250	50.000	0.00	0.00	42.92	3.16
4780	8058	0.463654	TGACTGCGACCAAGCACTTT	60.464	50.000	0.00	0.00	42.92	2.66
4781	8059	1.202592	TGACTGCGACCAAGCACTTTA	60.203	47.619	0.00	0.00	42.92	1.85
4782	8060	2.076863	GACTGCGACCAAGCACTTTAT	58.923	47.619	0.00	0.00	42.92	1.40
4792	8070	5.316167	ACCAAGCACTTTATGTCATTGAGA	58.684	37.500	0.00	0.00	0.00	3.27
4801	8079	7.335422	CACTTTATGTCATTGAGAAGGTAAGCT	59.665	37.037	0.00	0.00	0.00	3.74
4804	8082	3.840666	TGTCATTGAGAAGGTAAGCTCCT	59.159	43.478	0.00	0.00	39.84	3.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.119553	TGCTATTTTTCATTTGCCTGAATTTCC	59.880	33.333	0.00	0.00	35.20	3.13
1	2	8.031848	TGCTATTTTTCATTTGCCTGAATTTC	57.968	30.769	0.00	0.00	35.20	2.17
6	7	5.404968	CGTTTGCTATTTTTCATTTGCCTGA	59.595	36.000	0.00	0.00	0.00	3.86
7	8	5.610975	CGTTTGCTATTTTTCATTTGCCTG	58.389	37.500	0.00	0.00	0.00	4.85
8	9	4.152223	GCGTTTGCTATTTTTCATTTGCCT	59.848	37.500	0.00	0.00	38.39	4.75
24	25	2.227865	TCCCAACAAAGATAGCGTTTGC	59.772	45.455	0.00	0.00	38.27	3.68
25	26	3.670627	GCTCCCAACAAAGATAGCGTTTG	60.671	47.826	0.00	0.00	40.18	2.93
26	27	2.488153	GCTCCCAACAAAGATAGCGTTT	59.512	45.455	0.00	0.00	0.00	3.60
27	28	2.084546	GCTCCCAACAAAGATAGCGTT	58.915	47.619	0.00	0.00	0.00	4.84
28	29	1.279271	AGCTCCCAACAAAGATAGCGT	59.721	47.619	0.00	0.00	35.17	5.07
29	30	2.029838	AGCTCCCAACAAAGATAGCG	57.970	50.000	0.00	0.00	35.17	4.26
30	31	3.507622	ACAAAGCTCCCAACAAAGATAGC	59.492	43.478	0.00	0.00	0.00	2.97
31	32	4.520492	ACACAAAGCTCCCAACAAAGATAG	59.480	41.667	0.00	0.00	0.00	2.08
32	33	4.278170	CACACAAAGCTCCCAACAAAGATA	59.722	41.667	0.00	0.00	0.00	1.98
33	34	3.068590	CACACAAAGCTCCCAACAAAGAT	59.931	43.478	0.00	0.00	0.00	2.40
34	35	2.426738	CACACAAAGCTCCCAACAAAGA	59.573	45.455	0.00	0.00	0.00	2.52
35	36	2.166254	ACACACAAAGCTCCCAACAAAG	59.834	45.455	0.00	0.00	0.00	2.77
36	37	2.094286	CACACACAAAGCTCCCAACAAA	60.094	45.455	0.00	0.00	0.00	2.83
37	38	1.476085	CACACACAAAGCTCCCAACAA	59.524	47.619	0.00	0.00	0.00	2.83
38	39	1.102154	CACACACAAAGCTCCCAACA	58.898	50.000	0.00	0.00	0.00	3.33
39	40	0.385390	CCACACACAAAGCTCCCAAC	59.615	55.000	0.00	0.00	0.00	3.77
40	41	0.257328	TCCACACACAAAGCTCCCAA	59.743	50.000	0.00	0.00	0.00	4.12
41	42	0.179020	CTCCACACACAAAGCTCCCA	60.179	55.000	0.00	0.00	0.00	4.37
42	43	0.108585	TCTCCACACACAAAGCTCCC	59.891	55.000	0.00	0.00	0.00	4.30
43	44	1.230324	GTCTCCACACACAAAGCTCC	58.770	55.000	0.00	0.00	0.00	4.70
44	45	1.953559	TGTCTCCACACACAAAGCTC	58.046	50.000	0.00	0.00	0.00	4.09
45	46	2.224606	CATGTCTCCACACACAAAGCT	58.775	47.619	0.00	0.00	34.48	3.74
46	47	1.267806	CCATGTCTCCACACACAAAGC	59.732	52.381	0.00	0.00	34.48	3.51
47	48	1.267806	GCCATGTCTCCACACACAAAG	59.732	52.381	0.00	0.00	34.48	2.77
48	49	1.133823	AGCCATGTCTCCACACACAAA	60.134	47.619	0.00	0.00	34.48	2.83
49	50	0.473755	AGCCATGTCTCCACACACAA	59.526	50.000	0.00	0.00	34.48	3.33
50	51	0.250424	CAGCCATGTCTCCACACACA	60.250	55.000	0.00	0.00	34.48	3.72
51	52	0.957395	CCAGCCATGTCTCCACACAC	60.957	60.000	0.00	0.00	34.48	3.82
52	53	1.376086	CCAGCCATGTCTCCACACA	59.624	57.895	0.00	0.00	34.48	3.72
53	54	1.377725	CCCAGCCATGTCTCCACAC	60.378	63.158	0.00	0.00	34.48	3.82
54	55	1.841302	GACCCAGCCATGTCTCCACA	61.841	60.000	0.00	0.00	36.78	4.17
55	56	1.078143	GACCCAGCCATGTCTCCAC	60.078	63.158	0.00	0.00	0.00	4.02
56	57	2.300967	GGACCCAGCCATGTCTCCA	61.301	63.158	0.00	0.00	0.00	3.86
57	58	1.566298	AAGGACCCAGCCATGTCTCC	61.566	60.000	0.00	0.00	0.00	3.71
58	59	0.107459	GAAGGACCCAGCCATGTCTC	60.107	60.000	0.00	0.00	0.00	3.36
59	60	0.548682	AGAAGGACCCAGCCATGTCT	60.549	55.000	0.00	0.00	0.00	3.41
60	61	0.329596	AAGAAGGACCCAGCCATGTC	59.670	55.000	0.00	0.00	0.00	3.06
61	62	0.038744	CAAGAAGGACCCAGCCATGT	59.961	55.000	0.00	0.00	0.00	3.21
62	63	1.318158	GCAAGAAGGACCCAGCCATG	61.318	60.000	0.00	0.00	0.00	3.66
63	64	1.000396	GCAAGAAGGACCCAGCCAT	60.000	57.895	0.00	0.00	0.00	4.40
64	65	2.129555	GAGCAAGAAGGACCCAGCCA	62.130	60.000	0.00	0.00	0.00	4.75
65	66	1.377856	GAGCAAGAAGGACCCAGCC	60.378	63.158	0.00	0.00	0.00	4.85
66	67	0.392327	GAGAGCAAGAAGGACCCAGC	60.392	60.000	0.00	0.00	0.00	4.85
67	68	0.251634	GGAGAGCAAGAAGGACCCAG	59.748	60.000	0.00	0.00	0.00	4.45
68	69	0.178891	AGGAGAGCAAGAAGGACCCA	60.179	55.000	0.00	0.00	0.00	4.51
69	70	0.539518	GAGGAGAGCAAGAAGGACCC	59.460	60.000	0.00	0.00	0.00	4.46
70	71	0.539518	GGAGGAGAGCAAGAAGGACC	59.460	60.000	0.00	0.00	0.00	4.46
71	72	0.174617	CGGAGGAGAGCAAGAAGGAC	59.825	60.000	0.00	0.00	0.00	3.85
72	73	2.584673	CGGAGGAGAGCAAGAAGGA	58.415	57.895	0.00	0.00	0.00	3.36
86	87	1.068474	GACAACGATGAACACCGGAG	58.932	55.000	9.46	1.26	0.00	4.63
87	88	0.320073	GGACAACGATGAACACCGGA	60.320	55.000	9.46	0.00	0.00	5.14
88	89	0.320421	AGGACAACGATGAACACCGG	60.320	55.000	0.00	0.00	0.00	5.28
89	90	1.508632	AAGGACAACGATGAACACCG	58.491	50.000	0.00	0.00	0.00	4.94
90	91	2.616842	ACAAAGGACAACGATGAACACC	59.383	45.455	0.00	0.00	0.00	4.16
91	92	3.963383	ACAAAGGACAACGATGAACAC	57.037	42.857	0.00	0.00	0.00	3.32
92	93	3.066064	CCAACAAAGGACAACGATGAACA	59.934	43.478	0.00	0.00	0.00	3.18
93	94	3.066203	ACCAACAAAGGACAACGATGAAC	59.934	43.478	0.00	0.00	0.00	3.18
94	95	3.283751	ACCAACAAAGGACAACGATGAA	58.716	40.909	0.00	0.00	0.00	2.57
95	96	2.875933	GACCAACAAAGGACAACGATGA	59.124	45.455	0.00	0.00	0.00	2.92
96	97	2.031157	GGACCAACAAAGGACAACGATG	60.031	50.000	0.00	0.00	0.00	3.84
97	98	2.158667	AGGACCAACAAAGGACAACGAT	60.159	45.455	0.00	0.00	0.00	3.73
98	99	1.210967	AGGACCAACAAAGGACAACGA	59.789	47.619	0.00	0.00	0.00	3.85
99	100	1.675552	AGGACCAACAAAGGACAACG	58.324	50.000	0.00	0.00	0.00	4.10
100	101	3.057526	GCATAGGACCAACAAAGGACAAC	60.058	47.826	0.00	0.00	0.00	3.32
101	102	3.153919	GCATAGGACCAACAAAGGACAA	58.846	45.455	0.00	0.00	0.00	3.18
102	103	2.790433	GCATAGGACCAACAAAGGACA	58.210	47.619	0.00	0.00	0.00	4.02
103	104	1.737793	CGCATAGGACCAACAAAGGAC	59.262	52.381	0.00	0.00	0.00	3.85
104	105	1.339631	CCGCATAGGACCAACAAAGGA	60.340	52.381	0.00	0.00	45.00	3.36
105	106	1.094785	CCGCATAGGACCAACAAAGG	58.905	55.000	0.00	0.00	45.00	3.11
106	107	0.451783	GCCGCATAGGACCAACAAAG	59.548	55.000	0.00	0.00	45.00	2.77
107	108	1.302383	CGCCGCATAGGACCAACAAA	61.302	55.000	0.00	0.00	45.00	2.83
108	109	1.743623	CGCCGCATAGGACCAACAA	60.744	57.895	0.00	0.00	45.00	2.83
109	110	2.125310	CGCCGCATAGGACCAACA	60.125	61.111	0.00	0.00	45.00	3.33
110	111	2.638330	TAGCGCCGCATAGGACCAAC	62.638	60.000	13.36	0.00	45.00	3.77
111	112	1.754380	ATAGCGCCGCATAGGACCAA	61.754	55.000	13.36	0.00	45.00	3.67
112	113	2.207229	ATAGCGCCGCATAGGACCA	61.207	57.895	13.36	0.00	45.00	4.02
113	114	1.738099	CATAGCGCCGCATAGGACC	60.738	63.158	13.36	0.00	45.00	4.46
114	115	0.242825	TACATAGCGCCGCATAGGAC	59.757	55.000	13.36	0.00	45.00	3.85
115	116	0.242825	GTACATAGCGCCGCATAGGA	59.757	55.000	13.36	0.00	45.00	2.94
116	117	1.071019	CGTACATAGCGCCGCATAGG	61.071	60.000	13.36	5.27	44.97	2.57
117	118	2.349843	CGTACATAGCGCCGCATAG	58.650	57.895	13.36	1.99	0.00	2.23
118	119	4.544762	CGTACATAGCGCCGCATA	57.455	55.556	13.36	0.75	0.00	3.14
125	126	3.798029	CGACGAGCGTACATAGCG	58.202	61.111	0.00	0.00	40.04	4.26
135	136	1.733399	GGAGACACCAACGACGAGC	60.733	63.158	0.00	0.00	38.79	5.03
136	137	1.658114	TGGAGACACCAACGACGAG	59.342	57.895	0.00	0.00	46.75	4.18
137	138	3.844741	TGGAGACACCAACGACGA	58.155	55.556	0.00	0.00	46.75	4.20
144	145	2.214216	CCCCGTCTTGGAGACACCA	61.214	63.158	8.62	0.00	45.30	4.17
145	146	1.765597	AACCCCGTCTTGGAGACACC	61.766	60.000	8.62	0.00	45.30	4.16
146	147	0.108019	AAACCCCGTCTTGGAGACAC	59.892	55.000	8.62	0.00	45.30	3.67
147	148	0.395312	GAAACCCCGTCTTGGAGACA	59.605	55.000	8.62	0.00	45.30	3.41
148	149	0.321387	GGAAACCCCGTCTTGGAGAC	60.321	60.000	0.00	0.00	42.00	3.36
149	150	2.063774	GGAAACCCCGTCTTGGAGA	58.936	57.895	0.00	0.00	42.00	3.71
150	151	4.716003	GGAAACCCCGTCTTGGAG	57.284	61.111	0.00	0.00	42.00	3.86
162	163	4.756502	ACTTGCTACGATCTAAGGGAAAC	58.243	43.478	0.00	0.00	0.00	2.78
163	164	4.142004	GGACTTGCTACGATCTAAGGGAAA	60.142	45.833	0.00	0.00	0.00	3.13
164	165	3.383825	GGACTTGCTACGATCTAAGGGAA	59.616	47.826	0.00	0.00	0.00	3.97
165	166	2.957006	GGACTTGCTACGATCTAAGGGA	59.043	50.000	0.00	0.00	0.00	4.20
166	167	2.959707	AGGACTTGCTACGATCTAAGGG	59.040	50.000	0.00	0.00	0.00	3.95
167	168	3.971150	CAGGACTTGCTACGATCTAAGG	58.029	50.000	0.00	0.00	0.00	2.69
180	181	1.242076	CAAGTGGAAGGCAGGACTTG	58.758	55.000	0.00	0.00	39.39	3.16
181	182	0.538287	GCAAGTGGAAGGCAGGACTT	60.538	55.000	0.00	0.00	0.00	3.01
182	183	1.073897	GCAAGTGGAAGGCAGGACT	59.926	57.895	0.00	0.00	0.00	3.85
183	184	1.973812	GGCAAGTGGAAGGCAGGAC	60.974	63.158	0.00	0.00	0.00	3.85
184	185	2.436109	GGCAAGTGGAAGGCAGGA	59.564	61.111	0.00	0.00	0.00	3.86
185	186	2.115910	TGGCAAGTGGAAGGCAGG	59.884	61.111	0.00	0.00	35.21	4.85
186	187	0.825010	AAGTGGCAAGTGGAAGGCAG	60.825	55.000	0.00	0.00	41.21	4.85
187	188	0.823356	GAAGTGGCAAGTGGAAGGCA	60.823	55.000	0.00	0.00	38.03	4.75
188	189	1.527433	GGAAGTGGCAAGTGGAAGGC	61.527	60.000	0.00	0.00	0.00	4.35
189	190	0.111253	AGGAAGTGGCAAGTGGAAGG	59.889	55.000	0.00	0.00	0.00	3.46
190	191	1.528129	GAGGAAGTGGCAAGTGGAAG	58.472	55.000	0.00	0.00	0.00	3.46
191	192	0.110486	GGAGGAAGTGGCAAGTGGAA	59.890	55.000	0.00	0.00	0.00	3.53
192	193	0.768221	AGGAGGAAGTGGCAAGTGGA	60.768	55.000	0.00	0.00	0.00	4.02
193	194	0.984230	TAGGAGGAAGTGGCAAGTGG	59.016	55.000	0.00	0.00	0.00	4.00
194	195	1.065854	CCTAGGAGGAAGTGGCAAGTG	60.066	57.143	1.05	0.00	37.67	3.16
195	196	1.280457	CCTAGGAGGAAGTGGCAAGT	58.720	55.000	1.05	0.00	37.67	3.16
196	197	0.107459	GCCTAGGAGGAAGTGGCAAG	60.107	60.000	14.75	0.00	42.79	4.01
197	198	1.991230	GCCTAGGAGGAAGTGGCAA	59.009	57.895	14.75	0.00	42.79	4.52
198	199	3.727387	GCCTAGGAGGAAGTGGCA	58.273	61.111	14.75	0.00	42.79	4.92
199	200	1.222113	GTGCCTAGGAGGAAGTGGC	59.778	63.158	14.75	0.00	37.67	5.01
200	201	0.827368	GAGTGCCTAGGAGGAAGTGG	59.173	60.000	14.75	0.00	37.67	4.00
201	202	1.480137	CTGAGTGCCTAGGAGGAAGTG	59.520	57.143	14.75	0.00	37.67	3.16
202	203	1.359474	TCTGAGTGCCTAGGAGGAAGT	59.641	52.381	14.75	0.00	37.67	3.01
203	204	2.031120	CTCTGAGTGCCTAGGAGGAAG	58.969	57.143	14.75	2.72	37.67	3.46
204	205	1.359474	ACTCTGAGTGCCTAGGAGGAA	59.641	52.381	14.75	0.00	37.67	3.36
205	206	1.003646	ACTCTGAGTGCCTAGGAGGA	58.996	55.000	14.75	0.00	37.67	3.71
206	207	1.110442	CACTCTGAGTGCCTAGGAGG	58.890	60.000	23.43	0.00	39.62	4.30
207	208	1.110442	CCACTCTGAGTGCCTAGGAG	58.890	60.000	28.14	11.92	44.63	3.69
208	209	0.704664	TCCACTCTGAGTGCCTAGGA	59.295	55.000	28.14	18.48	44.63	2.94
209	210	1.411977	CATCCACTCTGAGTGCCTAGG	59.588	57.143	28.14	16.62	44.63	3.02
210	211	1.411977	CCATCCACTCTGAGTGCCTAG	59.588	57.143	28.14	16.57	44.63	3.02
211	212	1.273267	ACCATCCACTCTGAGTGCCTA	60.273	52.381	28.14	17.31	44.63	3.93
212	213	0.546267	ACCATCCACTCTGAGTGCCT	60.546	55.000	28.14	16.18	44.63	4.75
213	214	0.392193	CACCATCCACTCTGAGTGCC	60.392	60.000	28.14	0.00	44.63	5.01
214	215	1.023513	GCACCATCCACTCTGAGTGC	61.024	60.000	28.14	14.79	44.63	4.40
215	216	0.738762	CGCACCATCCACTCTGAGTG	60.739	60.000	26.94	26.94	45.53	3.51
216	217	1.593787	CGCACCATCCACTCTGAGT	59.406	57.895	4.06	4.06	0.00	3.41
217	218	1.812922	GCGCACCATCCACTCTGAG	60.813	63.158	0.30	2.45	0.00	3.35
218	219	2.265739	GCGCACCATCCACTCTGA	59.734	61.111	0.30	0.00	0.00	3.27
219	220	2.821366	GGCGCACCATCCACTCTG	60.821	66.667	10.83	0.00	35.26	3.35
220	221	4.457496	CGGCGCACCATCCACTCT	62.457	66.667	10.83	0.00	34.57	3.24
221	222	4.760047	ACGGCGCACCATCCACTC	62.760	66.667	10.83	0.00	34.57	3.51
222	223	4.760047	GACGGCGCACCATCCACT	62.760	66.667	10.83	0.00	34.57	4.00
224	225	4.321966	TTGACGGCGCACCATCCA	62.322	61.111	10.83	0.00	34.57	3.41
225	226	3.499737	CTTGACGGCGCACCATCC	61.500	66.667	10.83	0.00	34.57	3.51
226	227	4.166011	GCTTGACGGCGCACCATC	62.166	66.667	10.83	0.55	34.57	3.51
234	235	2.668457	CCATAGAATATCGCTTGACGGC	59.332	50.000	0.00	0.00	43.89	5.68
235	236	4.174411	TCCATAGAATATCGCTTGACGG	57.826	45.455	0.00	0.00	43.89	4.79
236	237	5.461526	TCTTCCATAGAATATCGCTTGACG	58.538	41.667	0.00	0.00	45.62	4.35
237	238	6.312426	CCATCTTCCATAGAATATCGCTTGAC	59.688	42.308	0.00	0.00	36.22	3.18
238	239	6.014242	ACCATCTTCCATAGAATATCGCTTGA	60.014	38.462	0.00	0.00	36.22	3.02
239	240	6.169094	ACCATCTTCCATAGAATATCGCTTG	58.831	40.000	0.00	0.00	36.22	4.01
240	241	6.212388	AGACCATCTTCCATAGAATATCGCTT	59.788	38.462	0.00	0.00	36.22	4.68
241	242	5.719085	AGACCATCTTCCATAGAATATCGCT	59.281	40.000	0.00	0.00	36.22	4.93
242	243	5.971763	AGACCATCTTCCATAGAATATCGC	58.028	41.667	0.00	0.00	36.22	4.58
256	257	1.258445	ACGCCTCCGAAGACCATCTT	61.258	55.000	0.00	0.00	39.87	2.40
257	258	1.668101	GACGCCTCCGAAGACCATCT	61.668	60.000	0.00	0.00	38.29	2.90
258	259	1.227002	GACGCCTCCGAAGACCATC	60.227	63.158	0.00	0.00	38.29	3.51
259	260	2.722201	GGACGCCTCCGAAGACCAT	61.722	63.158	0.00	0.00	38.29	3.55
260	261	3.379445	GGACGCCTCCGAAGACCA	61.379	66.667	0.00	0.00	38.29	4.02
287	288	1.398762	CTGACACACATCGCGTCTCG	61.399	60.000	5.77	0.00	40.15	4.04
288	289	0.387367	ACTGACACACATCGCGTCTC	60.387	55.000	5.77	0.00	0.00	3.36
289	290	0.032130	AACTGACACACATCGCGTCT	59.968	50.000	5.77	0.00	0.00	4.18
290	291	0.161658	CAACTGACACACATCGCGTC	59.838	55.000	5.77	0.00	0.00	5.19
291	292	0.529773	ACAACTGACACACATCGCGT	60.530	50.000	5.77	0.00	0.00	6.01
292	293	0.111134	CACAACTGACACACATCGCG	60.111	55.000	0.00	0.00	0.00	5.87
293	294	1.217001	TCACAACTGACACACATCGC	58.783	50.000	0.00	0.00	0.00	4.58
294	295	5.553721	CATATTCACAACTGACACACATCG	58.446	41.667	0.00	0.00	0.00	3.84
295	296	5.122869	AGCATATTCACAACTGACACACATC	59.877	40.000	0.00	0.00	0.00	3.06
296	297	5.005740	AGCATATTCACAACTGACACACAT	58.994	37.500	0.00	0.00	0.00	3.21
297	298	4.388485	AGCATATTCACAACTGACACACA	58.612	39.130	0.00	0.00	0.00	3.72
298	299	4.692625	AGAGCATATTCACAACTGACACAC	59.307	41.667	0.00	0.00	0.00	3.82
299	300	4.898320	AGAGCATATTCACAACTGACACA	58.102	39.130	0.00	0.00	0.00	3.72
300	301	5.641209	AGAAGAGCATATTCACAACTGACAC	59.359	40.000	0.00	0.00	0.00	3.67
301	302	5.640783	CAGAAGAGCATATTCACAACTGACA	59.359	40.000	0.00	0.00	0.00	3.58
302	303	5.641209	ACAGAAGAGCATATTCACAACTGAC	59.359	40.000	0.00	0.00	0.00	3.51
303	304	5.640783	CACAGAAGAGCATATTCACAACTGA	59.359	40.000	0.00	0.00	0.00	3.41
304	305	5.410746	ACACAGAAGAGCATATTCACAACTG	59.589	40.000	0.00	0.00	0.00	3.16
305	306	5.555017	ACACAGAAGAGCATATTCACAACT	58.445	37.500	0.00	0.00	0.00	3.16
306	307	5.869753	ACACAGAAGAGCATATTCACAAC	57.130	39.130	0.00	0.00	0.00	3.32
307	308	5.764686	ACAACACAGAAGAGCATATTCACAA	59.235	36.000	0.00	0.00	0.00	3.33
308	309	5.308014	ACAACACAGAAGAGCATATTCACA	58.692	37.500	0.00	0.00	0.00	3.58
309	310	5.869753	ACAACACAGAAGAGCATATTCAC	57.130	39.130	0.00	0.00	0.00	3.18
310	311	5.582269	GCTACAACACAGAAGAGCATATTCA	59.418	40.000	0.00	0.00	0.00	2.57
311	312	5.814705	AGCTACAACACAGAAGAGCATATTC	59.185	40.000	0.00	0.00	32.28	1.75
312	313	5.738909	AGCTACAACACAGAAGAGCATATT	58.261	37.500	0.00	0.00	32.28	1.28
313	314	5.350504	AGCTACAACACAGAAGAGCATAT	57.649	39.130	0.00	0.00	32.28	1.78
314	315	4.808414	AGCTACAACACAGAAGAGCATA	57.192	40.909	0.00	0.00	32.28	3.14
315	316	3.692257	AGCTACAACACAGAAGAGCAT	57.308	42.857	0.00	0.00	32.28	3.79
316	317	3.133691	CAAGCTACAACACAGAAGAGCA	58.866	45.455	0.00	0.00	32.28	4.26
317	318	2.096019	GCAAGCTACAACACAGAAGAGC	60.096	50.000	0.00	0.00	0.00	4.09
318	319	3.397482	AGCAAGCTACAACACAGAAGAG	58.603	45.455	0.00	0.00	0.00	2.85
319	320	3.475566	AGCAAGCTACAACACAGAAGA	57.524	42.857	0.00	0.00	0.00	2.87
320	321	4.558538	AAAGCAAGCTACAACACAGAAG	57.441	40.909	0.00	0.00	0.00	2.85
321	322	4.025229	CGTAAAGCAAGCTACAACACAGAA	60.025	41.667	0.00	0.00	0.00	3.02
322	323	3.493129	CGTAAAGCAAGCTACAACACAGA	59.507	43.478	0.00	0.00	0.00	3.41
323	324	3.363970	CCGTAAAGCAAGCTACAACACAG	60.364	47.826	0.00	0.00	0.00	3.66
324	325	2.546368	CCGTAAAGCAAGCTACAACACA	59.454	45.455	0.00	0.00	0.00	3.72
325	326	2.546789	ACCGTAAAGCAAGCTACAACAC	59.453	45.455	0.00	0.00	0.00	3.32
326	327	2.546368	CACCGTAAAGCAAGCTACAACA	59.454	45.455	0.00	0.00	0.00	3.33
327	328	2.546789	ACACCGTAAAGCAAGCTACAAC	59.453	45.455	0.00	0.00	0.00	3.32
328	329	2.841215	ACACCGTAAAGCAAGCTACAA	58.159	42.857	0.00	0.00	0.00	2.41
329	330	2.536761	ACACCGTAAAGCAAGCTACA	57.463	45.000	0.00	0.00	0.00	2.74
330	331	2.546789	ACAACACCGTAAAGCAAGCTAC	59.453	45.455	0.00	0.00	0.00	3.58
331	332	2.803956	GACAACACCGTAAAGCAAGCTA	59.196	45.455	0.00	0.00	0.00	3.32
332	333	1.602377	GACAACACCGTAAAGCAAGCT	59.398	47.619	0.00	0.00	0.00	3.74
333	334	1.334689	GGACAACACCGTAAAGCAAGC	60.335	52.381	0.00	0.00	0.00	4.01
334	335	1.070175	CGGACAACACCGTAAAGCAAG	60.070	52.381	0.00	0.00	46.70	4.01
335	336	0.938713	CGGACAACACCGTAAAGCAA	59.061	50.000	0.00	0.00	46.70	3.91
336	337	2.607457	CGGACAACACCGTAAAGCA	58.393	52.632	0.00	0.00	46.70	3.91
344	345	3.314541	AGTTCATAGACGGACAACACC	57.685	47.619	0.00	0.00	0.00	4.16
345	346	5.467705	ACTAAGTTCATAGACGGACAACAC	58.532	41.667	0.00	0.00	0.00	3.32
346	347	5.717078	ACTAAGTTCATAGACGGACAACA	57.283	39.130	0.00	0.00	0.00	3.33
347	348	7.972277	TCATAACTAAGTTCATAGACGGACAAC	59.028	37.037	0.00	0.00	0.00	3.32
348	349	8.058667	TCATAACTAAGTTCATAGACGGACAA	57.941	34.615	0.00	0.00	0.00	3.18
349	350	7.338703	ACTCATAACTAAGTTCATAGACGGACA	59.661	37.037	0.00	0.00	0.00	4.02
350	351	7.644551	CACTCATAACTAAGTTCATAGACGGAC	59.355	40.741	0.00	0.00	0.00	4.79
351	352	7.201794	CCACTCATAACTAAGTTCATAGACGGA	60.202	40.741	0.00	0.00	0.00	4.69
352	353	6.918569	CCACTCATAACTAAGTTCATAGACGG	59.081	42.308	0.00	0.00	0.00	4.79
353	354	7.432545	CACCACTCATAACTAAGTTCATAGACG	59.567	40.741	0.00	0.00	0.00	4.18
354	355	7.707035	CCACCACTCATAACTAAGTTCATAGAC	59.293	40.741	0.00	0.00	0.00	2.59
355	356	7.147724	CCCACCACTCATAACTAAGTTCATAGA	60.148	40.741	0.00	0.00	0.00	1.98
356	357	6.986817	CCCACCACTCATAACTAAGTTCATAG	59.013	42.308	0.00	0.00	0.00	2.23
357	358	6.126883	CCCCACCACTCATAACTAAGTTCATA	60.127	42.308	0.00	0.00	0.00	2.15
358	359	5.339200	CCCCACCACTCATAACTAAGTTCAT	60.339	44.000	0.00	0.00	0.00	2.57
359	360	4.019681	CCCCACCACTCATAACTAAGTTCA	60.020	45.833	0.00	0.00	0.00	3.18
360	361	4.019591	ACCCCACCACTCATAACTAAGTTC	60.020	45.833	0.00	0.00	0.00	3.01
361	362	3.914435	ACCCCACCACTCATAACTAAGTT	59.086	43.478	0.00	0.00	0.00	2.66
362	363	3.263425	CACCCCACCACTCATAACTAAGT	59.737	47.826	0.00	0.00	0.00	2.24
363	364	3.263425	ACACCCCACCACTCATAACTAAG	59.737	47.826	0.00	0.00	0.00	2.18
364	365	3.008594	CACACCCCACCACTCATAACTAA	59.991	47.826	0.00	0.00	0.00	2.24
365	366	2.569853	CACACCCCACCACTCATAACTA	59.430	50.000	0.00	0.00	0.00	2.24
366	367	1.351017	CACACCCCACCACTCATAACT	59.649	52.381	0.00	0.00	0.00	2.24
367	368	1.073284	ACACACCCCACCACTCATAAC	59.927	52.381	0.00	0.00	0.00	1.89
368	369	1.073125	CACACACCCCACCACTCATAA	59.927	52.381	0.00	0.00	0.00	1.90
369	370	0.690192	CACACACCCCACCACTCATA	59.310	55.000	0.00	0.00	0.00	2.15
370	371	1.455849	CACACACCCCACCACTCAT	59.544	57.895	0.00	0.00	0.00	2.90
371	372	2.915079	CACACACCCCACCACTCA	59.085	61.111	0.00	0.00	0.00	3.41
372	373	1.764571	TAGCACACACCCCACCACTC	61.765	60.000	0.00	0.00	0.00	3.51
373	374	1.133809	ATAGCACACACCCCACCACT	61.134	55.000	0.00	0.00	0.00	4.00
374	375	0.960364	CATAGCACACACCCCACCAC	60.960	60.000	0.00	0.00	0.00	4.16
375	376	1.378378	CATAGCACACACCCCACCA	59.622	57.895	0.00	0.00	0.00	4.17
376	377	2.046285	GCATAGCACACACCCCACC	61.046	63.158	0.00	0.00	0.00	4.61
377	378	1.002134	AGCATAGCACACACCCCAC	60.002	57.895	0.00	0.00	0.00	4.61
378	379	1.299648	GAGCATAGCACACACCCCA	59.700	57.895	0.00	0.00	0.00	4.96
379	380	0.107017	ATGAGCATAGCACACACCCC	60.107	55.000	0.00	0.00	31.30	4.95
380	381	1.402968	CAATGAGCATAGCACACACCC	59.597	52.381	0.00	0.00	31.30	4.61
381	382	2.086869	ACAATGAGCATAGCACACACC	58.913	47.619	0.00	0.00	31.30	4.16
382	383	3.725895	CGAACAATGAGCATAGCACACAC	60.726	47.826	0.00	0.00	31.30	3.82
383	384	2.416202	CGAACAATGAGCATAGCACACA	59.584	45.455	0.00	0.00	31.30	3.72
384	385	2.789092	GCGAACAATGAGCATAGCACAC	60.789	50.000	0.00	0.00	31.30	3.82
385	386	1.398041	GCGAACAATGAGCATAGCACA	59.602	47.619	0.00	0.00	33.26	4.57
386	387	1.398041	TGCGAACAATGAGCATAGCAC	59.602	47.619	0.00	0.00	35.81	4.40
387	388	1.667212	CTGCGAACAATGAGCATAGCA	59.333	47.619	3.85	0.00	40.35	3.49
388	389	1.596464	GCTGCGAACAATGAGCATAGC	60.596	52.381	3.85	0.00	40.35	2.97
389	390	1.332640	CGCTGCGAACAATGAGCATAG	60.333	52.381	18.66	0.00	40.35	2.23
390	391	0.652071	CGCTGCGAACAATGAGCATA	59.348	50.000	18.66	0.00	40.35	3.14
391	392	1.020861	TCGCTGCGAACAATGAGCAT	61.021	50.000	23.88	0.00	40.35	3.79
392	393	1.629345	CTCGCTGCGAACAATGAGCA	61.629	55.000	25.86	0.00	34.74	4.26
393	394	1.059994	CTCGCTGCGAACAATGAGC	59.940	57.895	25.86	0.00	34.74	4.26
394	395	0.094216	CACTCGCTGCGAACAATGAG	59.906	55.000	25.86	14.29	34.74	2.90
395	396	0.319469	TCACTCGCTGCGAACAATGA	60.319	50.000	25.86	21.27	34.74	2.57
396	397	0.723414	ATCACTCGCTGCGAACAATG	59.277	50.000	25.86	19.53	34.74	2.82
397	398	2.196749	CTATCACTCGCTGCGAACAAT	58.803	47.619	25.86	19.07	34.74	2.71
398	399	1.629013	CTATCACTCGCTGCGAACAA	58.371	50.000	25.86	13.59	34.74	2.83
399	400	0.179137	CCTATCACTCGCTGCGAACA	60.179	55.000	25.86	12.51	34.74	3.18
400	401	0.179134	ACCTATCACTCGCTGCGAAC	60.179	55.000	25.86	0.00	34.74	3.95
401	402	0.530744	AACCTATCACTCGCTGCGAA	59.469	50.000	25.86	11.91	34.74	4.70
402	403	0.100682	GAACCTATCACTCGCTGCGA	59.899	55.000	24.43	24.43	0.00	5.10
403	404	0.101399	AGAACCTATCACTCGCTGCG	59.899	55.000	17.25	17.25	0.00	5.18
404	405	2.301577	AAGAACCTATCACTCGCTGC	57.698	50.000	0.00	0.00	0.00	5.25
405	406	8.491152	CAAATTATAAGAACCTATCACTCGCTG	58.509	37.037	0.00	0.00	0.00	5.18
406	407	8.421784	TCAAATTATAAGAACCTATCACTCGCT	58.578	33.333	0.00	0.00	0.00	4.93
407	408	8.589335	TCAAATTATAAGAACCTATCACTCGC	57.411	34.615	0.00	0.00	0.00	5.03
457	458	8.557592	TTCTTTTCAGAGTATGTCTAGACGTA	57.442	34.615	18.92	18.92	32.51	3.57
458	459	7.450124	TTCTTTTCAGAGTATGTCTAGACGT	57.550	36.000	20.98	20.98	32.51	4.34
459	460	8.744008	TTTTCTTTTCAGAGTATGTCTAGACG	57.256	34.615	17.85	2.07	32.51	4.18
460	461	8.652463	GCTTTTCTTTTCAGAGTATGTCTAGAC	58.348	37.037	16.32	16.32	32.51	2.59
461	462	8.367911	TGCTTTTCTTTTCAGAGTATGTCTAGA	58.632	33.333	0.00	0.00	32.51	2.43
462	463	8.539770	TGCTTTTCTTTTCAGAGTATGTCTAG	57.460	34.615	0.00	0.00	32.51	2.43
463	464	8.902540	TTGCTTTTCTTTTCAGAGTATGTCTA	57.097	30.769	0.00	0.00	32.51	2.59
464	465	7.807977	TTGCTTTTCTTTTCAGAGTATGTCT	57.192	32.000	0.00	0.00	35.00	3.41
465	466	7.112148	CGTTTGCTTTTCTTTTCAGAGTATGTC	59.888	37.037	0.00	0.00	0.00	3.06
466	467	6.912591	CGTTTGCTTTTCTTTTCAGAGTATGT	59.087	34.615	0.00	0.00	0.00	2.29
467	468	6.129352	GCGTTTGCTTTTCTTTTCAGAGTATG	60.129	38.462	0.00	0.00	38.39	2.39
468	469	5.915196	GCGTTTGCTTTTCTTTTCAGAGTAT	59.085	36.000	0.00	0.00	38.39	2.12
469	470	5.270853	GCGTTTGCTTTTCTTTTCAGAGTA	58.729	37.500	0.00	0.00	38.39	2.59
470	471	4.105486	GCGTTTGCTTTTCTTTTCAGAGT	58.895	39.130	0.00	0.00	38.39	3.24
471	472	3.178423	CGCGTTTGCTTTTCTTTTCAGAG	59.822	43.478	0.00	0.00	39.65	3.35
472	473	3.105203	CGCGTTTGCTTTTCTTTTCAGA	58.895	40.909	0.00	0.00	39.65	3.27
473	474	2.346649	GCGCGTTTGCTTTTCTTTTCAG	60.347	45.455	8.43	0.00	39.65	3.02
474	475	1.586123	GCGCGTTTGCTTTTCTTTTCA	59.414	42.857	8.43	0.00	39.65	2.69
475	476	1.586123	TGCGCGTTTGCTTTTCTTTTC	59.414	42.857	8.43	0.00	39.65	2.29
476	477	1.634702	TGCGCGTTTGCTTTTCTTTT	58.365	40.000	8.43	0.00	39.65	2.27
477	478	1.851658	ATGCGCGTTTGCTTTTCTTT	58.148	40.000	8.43	0.00	39.65	2.52
478	479	2.697431	TATGCGCGTTTGCTTTTCTT	57.303	40.000	7.78	0.00	39.65	2.52
479	480	2.919666	ATATGCGCGTTTGCTTTTCT	57.080	40.000	7.78	0.00	39.65	2.52
480	481	6.577055	TGATATTATATGCGCGTTTGCTTTTC	59.423	34.615	7.78	0.00	39.65	2.29
481	482	6.359617	GTGATATTATATGCGCGTTTGCTTTT	59.640	34.615	7.78	0.00	39.65	2.27
482	483	5.851177	GTGATATTATATGCGCGTTTGCTTT	59.149	36.000	7.78	0.00	39.65	3.51
483	484	5.179368	AGTGATATTATATGCGCGTTTGCTT	59.821	36.000	7.78	0.00	39.65	3.91
484	485	4.690748	AGTGATATTATATGCGCGTTTGCT	59.309	37.500	7.78	0.00	39.65	3.91
485	486	4.957971	AGTGATATTATATGCGCGTTTGC	58.042	39.130	7.78	0.00	37.91	3.68
486	487	7.278211	ACTAGTGATATTATATGCGCGTTTG	57.722	36.000	7.78	0.00	0.00	2.93
487	488	8.242053	AGTACTAGTGATATTATATGCGCGTTT	58.758	33.333	7.78	1.65	0.00	3.60
590	591	1.739067	GTTGACAGGGGCTATGTGTC	58.261	55.000	0.00	0.00	40.89	3.67
619	620	6.127479	ACTGAGCTCGAGTCAAGAAATCTTAT	60.127	38.462	15.13	0.00	34.28	1.73
622	623	3.509575	ACTGAGCTCGAGTCAAGAAATCT	59.490	43.478	15.13	0.00	0.00	2.40
686	687	1.267261	CGAAGGTAGAGGTAGGCGATG	59.733	57.143	0.00	0.00	0.00	3.84
687	688	1.142465	TCGAAGGTAGAGGTAGGCGAT	59.858	52.381	0.00	0.00	0.00	4.58
688	689	0.543277	TCGAAGGTAGAGGTAGGCGA	59.457	55.000	0.00	0.00	0.00	5.54
689	690	1.334243	CTTCGAAGGTAGAGGTAGGCG	59.666	57.143	17.70	0.00	0.00	5.52
690	691	2.619646	CTCTTCGAAGGTAGAGGTAGGC	59.380	54.545	24.37	0.00	34.62	3.93
743	793	0.032615	AGGTTGGTGGCCAAGTTGAA	60.033	50.000	7.24	0.00	44.82	2.69
744	794	0.467290	GAGGTTGGTGGCCAAGTTGA	60.467	55.000	7.24	0.00	44.82	3.18
745	795	1.463553	GGAGGTTGGTGGCCAAGTTG	61.464	60.000	7.24	0.00	44.82	3.16
746	796	1.152546	GGAGGTTGGTGGCCAAGTT	60.153	57.895	7.24	0.00	44.82	2.66
747	797	2.520968	GGAGGTTGGTGGCCAAGT	59.479	61.111	7.24	0.00	44.82	3.16
748	798	2.672996	CGGAGGTTGGTGGCCAAG	60.673	66.667	7.24	0.00	44.82	3.61
749	799	3.494254	ACGGAGGTTGGTGGCCAA	61.494	61.111	7.24	0.00	41.69	4.52
750	800	4.263572	CACGGAGGTTGGTGGCCA	62.264	66.667	0.00	0.00	0.00	5.36
752	802	4.947147	TGCACGGAGGTTGGTGGC	62.947	66.667	0.00	0.00	34.76	5.01
753	803	2.034066	ATGCACGGAGGTTGGTGG	59.966	61.111	0.00	0.00	34.76	4.61
754	804	2.981560	GCATGCACGGAGGTTGGTG	61.982	63.158	14.21	0.00	37.22	4.17
755	805	2.672996	GCATGCACGGAGGTTGGT	60.673	61.111	14.21	0.00	0.00	3.67
756	806	3.443045	GGCATGCACGGAGGTTGG	61.443	66.667	21.36	0.00	0.00	3.77
757	807	2.360350	AGGCATGCACGGAGGTTG	60.360	61.111	21.36	0.00	0.00	3.77
758	808	2.045926	GAGGCATGCACGGAGGTT	60.046	61.111	21.36	0.00	0.00	3.50
759	809	4.101448	GGAGGCATGCACGGAGGT	62.101	66.667	21.36	0.00	0.00	3.85
760	810	3.335356	AAGGAGGCATGCACGGAGG	62.335	63.158	21.36	0.00	0.00	4.30
761	811	1.817099	GAAGGAGGCATGCACGGAG	60.817	63.158	21.36	0.00	0.00	4.63
762	812	2.268920	GAAGGAGGCATGCACGGA	59.731	61.111	21.36	0.00	0.00	4.69
763	813	3.197790	CGAAGGAGGCATGCACGG	61.198	66.667	21.36	0.00	0.00	4.94
764	814	3.869272	GCGAAGGAGGCATGCACG	61.869	66.667	21.36	14.61	0.00	5.34
765	815	3.869272	CGCGAAGGAGGCATGCAC	61.869	66.667	21.36	12.64	0.00	4.57
775	825	4.735132	TTCAGGACGGCGCGAAGG	62.735	66.667	12.10	0.00	0.00	3.46
776	826	0.804544	TAATTCAGGACGGCGCGAAG	60.805	55.000	12.10	4.68	0.00	3.79
777	827	0.390078	TTAATTCAGGACGGCGCGAA	60.390	50.000	12.10	5.39	0.00	4.70
778	828	0.179094	ATTAATTCAGGACGGCGCGA	60.179	50.000	12.10	0.00	0.00	5.87
779	829	0.655733	AATTAATTCAGGACGGCGCG	59.344	50.000	6.90	0.00	0.00	6.86
780	830	1.002792	GGAATTAATTCAGGACGGCGC	60.003	52.381	25.55	0.00	38.53	6.53
781	831	2.031683	GTGGAATTAATTCAGGACGGCG	59.968	50.000	25.55	4.80	38.53	6.46
782	832	3.013921	TGTGGAATTAATTCAGGACGGC	58.986	45.455	25.55	10.07	38.53	5.68
783	833	3.627577	CCTGTGGAATTAATTCAGGACGG	59.372	47.826	25.55	21.11	45.76	4.79
784	834	4.261801	ACCTGTGGAATTAATTCAGGACG	58.738	43.478	28.34	16.63	45.76	4.79
785	835	4.332819	CGACCTGTGGAATTAATTCAGGAC	59.667	45.833	28.34	23.29	45.76	3.85
786	836	4.224147	TCGACCTGTGGAATTAATTCAGGA	59.776	41.667	28.34	13.01	45.76	3.86
788	838	4.032900	CGTCGACCTGTGGAATTAATTCAG	59.967	45.833	25.55	16.42	38.53	3.02
789	839	3.930229	CGTCGACCTGTGGAATTAATTCA	59.070	43.478	25.55	11.94	38.53	2.57
790	840	3.242316	GCGTCGACCTGTGGAATTAATTC	60.242	47.826	18.22	18.22	36.08	2.17
791	841	2.676342	GCGTCGACCTGTGGAATTAATT	59.324	45.455	10.58	0.00	0.00	1.40
792	842	2.277084	GCGTCGACCTGTGGAATTAAT	58.723	47.619	10.58	0.00	0.00	1.40
793	843	1.673626	GGCGTCGACCTGTGGAATTAA	60.674	52.381	10.58	0.00	0.00	1.40
794	844	0.108520	GGCGTCGACCTGTGGAATTA	60.109	55.000	10.58	0.00	0.00	1.40
1070	1153	1.959042	CCAGCTGCCATCTCGTATTT	58.041	50.000	8.66	0.00	0.00	1.40
1260	1343	4.505217	GTCGTCAAGCCATGCGCG	62.505	66.667	0.00	0.00	44.76	6.86
1373	1456	3.243569	CCGAGATCTTGTGGTACCAGATC	60.244	52.174	24.96	24.96	36.56	2.75
1433	1516	2.354188	CGCGACGTGTTGGAGACA	60.354	61.111	0.00	0.00	39.83	3.41
1466	1549	3.616721	AGTGCGAGGTTGCCGTCT	61.617	61.111	0.00	0.00	0.00	4.18
2598	2681	6.051074	TCTTCATCGTACCTCTTATCGTACA	58.949	40.000	0.00	0.00	35.59	2.90
2665	2748	3.579709	CTGTACTTGTAGCTCACACAGG	58.420	50.000	0.00	0.00	36.69	4.00
2669	2752	1.883926	TCGCTGTACTTGTAGCTCACA	59.116	47.619	0.00	0.00	37.78	3.58
2698	2781	2.432874	TCGGTGAAGTTCTTGGTCAGAA	59.567	45.455	4.17	0.00	39.39	3.02
2699	2782	2.036387	TCGGTGAAGTTCTTGGTCAGA	58.964	47.619	4.17	0.00	0.00	3.27
2741	2824	2.833227	CCCTTGAACACCGACCCA	59.167	61.111	0.00	0.00	0.00	4.51
2921	3010	2.870411	GTTGGGCATGTAATCGTAGACC	59.130	50.000	0.00	0.00	42.51	3.85
3095	3196	1.228184	GGAGGCGTCGAGGAGGATA	60.228	63.158	9.75	0.00	0.00	2.59
3120	3221	2.359975	GAAGTCCGCCACCTTGGG	60.360	66.667	0.00	0.00	38.19	4.12
3251	3352	1.538047	TCCCGTAGCTAAACACGTCT	58.462	50.000	6.06	0.00	36.44	4.18
3407	3523	2.901042	GTCATCACGTCCCCCTCC	59.099	66.667	0.00	0.00	0.00	4.30
3528	3644	2.438434	CACCACTTCCCCCATCGC	60.438	66.667	0.00	0.00	0.00	4.58
3539	3655	1.548357	CCTCTAGCACCTGCACCACT	61.548	60.000	0.00	0.00	45.16	4.00
3605	3721	1.105759	GTACCGGCCGTCCTATGAGT	61.106	60.000	26.12	14.43	0.00	3.41
3609	3725	2.484062	CGTGTACCGGCCGTCCTAT	61.484	63.158	26.12	6.36	0.00	2.57
3652	3768	4.157958	GCGCTTCAAGCTGCTCCG	62.158	66.667	16.00	2.60	39.60	4.63
3691	3814	5.098178	GCTCTGTGCTATGGTACACTGTTT	61.098	45.833	0.00	0.00	39.42	2.83
3747	3871	3.071837	TCCATGGCGCGGACTACA	61.072	61.111	8.83	0.00	0.00	2.74
3751	3875	1.222115	GAATACTCCATGGCGCGGAC	61.222	60.000	8.83	0.00	0.00	4.79
3766	3890	5.290493	ACATGATAGTTTCAGCCGGAATA	57.710	39.130	5.05	0.00	37.89	1.75
3817	3946	7.787725	AAGGCGTAATAGACTTTTCATTAGG	57.212	36.000	0.00	0.00	35.61	2.69
3921	4050	4.326504	AACCACTTTGAAAGGCATCTTG	57.673	40.909	10.02	0.00	32.75	3.02
3924	4053	2.802247	GCAAACCACTTTGAAAGGCATC	59.198	45.455	10.02	0.00	39.43	3.91
3944	4073	5.859521	TGCATGTTTGTTCAAATAATGGC	57.140	34.783	17.32	13.06	0.00	4.40
3979	4108	4.747810	GTTGGACAACAATTGATCCATCC	58.252	43.478	22.64	16.50	41.95	3.51
4101	4234	8.819845	TCCGTATGTAGTCCATAGTAGAATCTA	58.180	37.037	0.00	0.00	36.71	1.98
4102	4235	7.687388	TCCGTATGTAGTCCATAGTAGAATCT	58.313	38.462	0.00	0.00	36.71	2.40
4103	4236	7.414319	GCTCCGTATGTAGTCCATAGTAGAATC	60.414	44.444	0.00	0.00	36.71	2.52
4104	4237	6.374894	GCTCCGTATGTAGTCCATAGTAGAAT	59.625	42.308	0.00	0.00	36.71	2.40
4106	4239	5.221783	TGCTCCGTATGTAGTCCATAGTAGA	60.222	44.000	0.00	0.00	36.71	2.59
4108	4241	4.976864	TGCTCCGTATGTAGTCCATAGTA	58.023	43.478	0.00	0.00	36.71	1.82
4111	4244	5.601583	TTTTGCTCCGTATGTAGTCCATA	57.398	39.130	0.00	0.00	34.86	2.74
4113	4246	3.965379	TTTTGCTCCGTATGTAGTCCA	57.035	42.857	0.00	0.00	0.00	4.02
4114	4247	4.439057	TCATTTTGCTCCGTATGTAGTCC	58.561	43.478	0.00	0.00	0.00	3.85
4117	4250	5.109210	TCACTCATTTTGCTCCGTATGTAG	58.891	41.667	0.00	0.00	0.00	2.74
4126	4259	7.041107	AGAGAGTAGATTCACTCATTTTGCTC	58.959	38.462	14.52	0.00	46.15	4.26
4220	4355	1.078159	TGCTTGGTACCTACTCCCTCA	59.922	52.381	14.36	0.00	0.00	3.86
4229	4364	1.493022	TCAGTTGGTTGCTTGGTACCT	59.507	47.619	14.36	0.00	35.41	3.08
4233	4368	1.724582	GCGTCAGTTGGTTGCTTGGT	61.725	55.000	0.00	0.00	0.00	3.67
4234	4369	1.008538	GCGTCAGTTGGTTGCTTGG	60.009	57.895	0.00	0.00	0.00	3.61
4235	4370	1.008538	GGCGTCAGTTGGTTGCTTG	60.009	57.895	0.00	0.00	0.00	4.01
4236	4371	1.152963	AGGCGTCAGTTGGTTGCTT	60.153	52.632	0.00	0.00	0.00	3.91
4238	4373	1.166531	AAGAGGCGTCAGTTGGTTGC	61.167	55.000	9.41	0.00	0.00	4.17
4242	4377	4.124851	AGTTATAAGAGGCGTCAGTTGG	57.875	45.455	9.41	0.00	0.00	3.77
4266	7543	4.403734	AGAGCCAAAAGGGAAAATAACGA	58.596	39.130	0.00	0.00	40.01	3.85
4268	7545	5.651530	GCTAGAGCCAAAAGGGAAAATAAC	58.348	41.667	0.00	0.00	40.01	1.89
4426	7703	7.391833	GGAGGAAAGTTCTCTTACACATCATTT	59.608	37.037	0.00	0.00	33.09	2.32
4456	7733	4.517075	GGTTCTCAAAGAAAGGAGGACAAG	59.483	45.833	0.00	0.00	40.71	3.16
4535	7813	6.719370	ACACTTGTGAGCCCTAAAATATTCAA	59.281	34.615	7.83	0.00	0.00	2.69
4565	7843	5.336213	GCAATGAATATAACATCCCAGCAGG	60.336	44.000	0.00	0.00	0.00	4.85
4566	7844	5.336213	GGCAATGAATATAACATCCCAGCAG	60.336	44.000	0.00	0.00	0.00	4.24
4569	7847	6.718454	AGAAGGCAATGAATATAACATCCCAG	59.282	38.462	0.00	0.00	0.00	4.45
4596	7874	0.032952	GCACTTCACGGTGTGGACTA	59.967	55.000	8.17	0.00	39.21	2.59
4606	7884	1.442769	AGGCACATAAGCACTTCACG	58.557	50.000	0.00	0.00	35.83	4.35
4638	7916	0.533308	GTTGCACCCTACGACACCAA	60.533	55.000	0.00	0.00	0.00	3.67
4659	7937	0.375106	GTGCATCAAAGAGGCGCTAC	59.625	55.000	7.64	1.20	44.68	3.58
4699	7977	0.240145	TCGACTACGGTGTCTTGCTG	59.760	55.000	8.11	0.00	40.21	4.41
4728	8006	6.349426	CAAAAGCAAATCATCAAGAAACACG	58.651	36.000	0.00	0.00	0.00	4.49
4758	8036	1.737735	TGCTTGGTCGCAGTCATCG	60.738	57.895	0.00	0.00	34.44	3.84
4761	8039	0.463654	AAAGTGCTTGGTCGCAGTCA	60.464	50.000	0.00	0.00	42.43	3.41
4765	8043	1.804151	GACATAAAGTGCTTGGTCGCA	59.196	47.619	0.00	0.00	37.62	5.10
4768	8046	5.412594	TCTCAATGACATAAAGTGCTTGGTC	59.587	40.000	0.00	0.00	0.00	4.02
4778	8056	6.823689	GGAGCTTACCTTCTCAATGACATAAA	59.176	38.462	0.00	0.00	0.00	1.40
4779	8057	6.156949	AGGAGCTTACCTTCTCAATGACATAA	59.843	38.462	0.00	0.00	36.86	1.90
4780	8058	5.663106	AGGAGCTTACCTTCTCAATGACATA	59.337	40.000	0.00	0.00	36.86	2.29
4781	8059	4.472833	AGGAGCTTACCTTCTCAATGACAT	59.527	41.667	0.00	0.00	36.86	3.06
4782	8060	3.840666	AGGAGCTTACCTTCTCAATGACA	59.159	43.478	0.00	0.00	36.86	3.58
4804	8082	1.699083	TCTCAATCTTGTGCCTGGACA	59.301	47.619	0.00	0.00	0.00	4.02
4815	8093	1.274728	AGCACACGAGCTCTCAATCTT	59.725	47.619	12.85	0.00	42.18	2.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.