Multiple sequence alignment - TraesCS1D01G259600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G259600 chr1D 100.000 6646 0 0 1 6646 352410937 352417582 0.000000e+00 12273.0
1 TraesCS1D01G259600 chr1D 86.640 494 54 10 6158 6646 352562199 352561713 2.730000e-148 536.0
2 TraesCS1D01G259600 chr1D 99.074 108 1 0 2357 2464 352413185 352413292 1.890000e-45 195.0
3 TraesCS1D01G259600 chr1D 99.074 108 1 0 2249 2356 352413293 352413400 1.890000e-45 195.0
4 TraesCS1D01G259600 chr1D 95.050 101 5 0 2944 3044 354519018 354518918 6.900000e-35 159.0
5 TraesCS1D01G259600 chr1A 94.250 2087 78 12 3040 5111 452862148 452864207 0.000000e+00 3151.0
6 TraesCS1D01G259600 chr1A 88.407 2329 131 62 92 2356 452859406 452861659 0.000000e+00 2676.0
7 TraesCS1D01G259600 chr1A 91.846 883 51 13 5410 6286 452864908 452865775 0.000000e+00 1212.0
8 TraesCS1D01G259600 chr1A 92.206 603 33 8 2357 2948 452861552 452862151 0.000000e+00 841.0
9 TraesCS1D01G259600 chr1A 85.326 368 33 11 6277 6640 452868201 452868551 1.760000e-95 361.0
10 TraesCS1D01G259600 chr1A 93.182 44 3 0 2555 2598 8164392 8164349 1.550000e-06 65.8
11 TraesCS1D01G259600 chr1B 91.261 1785 100 37 15 1778 474681277 474683026 0.000000e+00 2381.0
12 TraesCS1D01G259600 chr1B 90.317 1229 73 24 3968 5178 474685160 474686360 0.000000e+00 1568.0
13 TraesCS1D01G259600 chr1B 87.111 931 76 17 3041 3945 474684177 474685089 0.000000e+00 1014.0
14 TraesCS1D01G259600 chr1B 87.920 803 75 14 5848 6639 474754360 474755151 0.000000e+00 926.0
15 TraesCS1D01G259600 chr1B 89.899 594 48 9 2357 2942 474683584 474684173 0.000000e+00 754.0
16 TraesCS1D01G259600 chr1B 90.038 532 39 6 1775 2297 474683106 474683632 0.000000e+00 676.0
17 TraesCS1D01G259600 chr1B 91.772 474 33 4 5276 5747 474686766 474687235 0.000000e+00 654.0
18 TraesCS1D01G259600 chr1B 78.983 295 46 10 2556 2838 269213820 269214110 3.160000e-43 187.0
19 TraesCS1D01G259600 chr1B 82.609 207 22 11 1606 1807 269213540 269213737 3.190000e-38 171.0
20 TraesCS1D01G259600 chr7B 84.122 655 77 19 1027 1678 89670416 89671046 5.700000e-170 608.0
21 TraesCS1D01G259600 chr7B 90.090 111 10 1 2945 3055 267168065 267167956 6.950000e-30 143.0
22 TraesCS1D01G259600 chrUn 81.051 723 93 27 1605 2313 385968413 385969105 2.730000e-148 536.0
23 TraesCS1D01G259600 chrUn 79.592 294 45 10 2556 2838 6227421 6227132 5.260000e-46 196.0
24 TraesCS1D01G259600 chrUn 82.927 205 23 9 1606 1807 6227699 6227504 2.460000e-39 174.0
25 TraesCS1D01G259600 chr2B 81.051 723 93 27 1605 2313 294275468 294276160 2.730000e-148 536.0
26 TraesCS1D01G259600 chr2B 81.051 723 93 27 1605 2313 294321621 294322313 2.730000e-148 536.0
27 TraesCS1D01G259600 chr2B 81.051 723 93 27 1605 2313 294365377 294366069 2.730000e-148 536.0
28 TraesCS1D01G259600 chr2B 82.609 322 42 10 2555 2865 294276380 294276698 8.490000e-69 272.0
29 TraesCS1D01G259600 chr2B 82.500 320 44 8 2555 2865 294366289 294366605 3.050000e-68 270.0
30 TraesCS1D01G259600 chr2B 82.540 315 44 7 2560 2865 294322536 294322848 3.950000e-67 267.0
31 TraesCS1D01G259600 chr3D 87.112 419 46 4 1899 2311 31431160 31430744 1.010000e-127 468.0
32 TraesCS1D01G259600 chr3D 82.197 264 45 2 4718 4980 511345635 511345897 6.710000e-55 226.0
33 TraesCS1D01G259600 chr3D 89.362 94 8 2 3542 3634 511344022 511344114 4.210000e-22 117.0
34 TraesCS1D01G259600 chr3A 87.160 405 48 3 1899 2301 51774896 51775298 2.180000e-124 457.0
35 TraesCS1D01G259600 chr3A 82.197 264 45 2 4718 4980 647477983 647478245 6.710000e-55 226.0
36 TraesCS1D01G259600 chr5B 87.658 316 34 4 1364 1678 84731750 84731439 4.900000e-96 363.0
37 TraesCS1D01G259600 chr5B 90.090 111 10 1 2945 3055 261395999 261395890 6.950000e-30 143.0
38 TraesCS1D01G259600 chr3B 82.197 264 45 2 4718 4980 672869081 672869343 6.710000e-55 226.0
39 TraesCS1D01G259600 chr3B 85.000 200 29 1 1049 1248 14236174 14235976 1.130000e-47 202.0
40 TraesCS1D01G259600 chr3B 79.322 295 45 10 2556 2838 48662342 48662052 6.800000e-45 193.0
41 TraesCS1D01G259600 chr3B 90.991 111 9 1 2945 3055 324816933 324817042 1.490000e-31 148.0
42 TraesCS1D01G259600 chr3B 90.426 94 7 2 3542 3634 672867450 672867542 9.050000e-24 122.0
43 TraesCS1D01G259600 chr2A 79.514 288 48 9 1698 1981 438727707 438727987 1.890000e-45 195.0
44 TraesCS1D01G259600 chr5D 90.991 111 9 1 2945 3055 373063879 373063770 1.490000e-31 148.0
45 TraesCS1D01G259600 chr5D 90.991 111 9 1 2945 3055 500289847 500289738 1.490000e-31 148.0
46 TraesCS1D01G259600 chr4D 91.589 107 9 0 2945 3051 335044964 335044858 1.490000e-31 148.0
47 TraesCS1D01G259600 chr6B 90.090 111 10 1 2945 3055 441220589 441220480 6.950000e-30 143.0
48 TraesCS1D01G259600 chr4B 90.090 111 10 1 2945 3055 201915040 201915149 6.950000e-30 143.0
49 TraesCS1D01G259600 chr4B 97.297 37 0 1 6573 6608 387787915 387787879 2.000000e-05 62.1
50 TraesCS1D01G259600 chr6D 98.039 51 1 0 533 583 5802504 5802554 9.180000e-14 89.8
51 TraesCS1D01G259600 chr4A 87.719 57 7 0 1111 1167 644453820 644453876 4.300000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G259600 chr1D 352410937 352417582 6645 False 12273.0 12273 100.000000 1 6646 1 chr1D.!!$F1 6645
1 TraesCS1D01G259600 chr1A 452859406 452868551 9145 False 1648.2 3151 90.407000 92 6640 5 chr1A.!!$F1 6548
2 TraesCS1D01G259600 chr1B 474681277 474687235 5958 False 1174.5 2381 90.066333 15 5747 6 chr1B.!!$F3 5732
3 TraesCS1D01G259600 chr1B 474754360 474755151 791 False 926.0 926 87.920000 5848 6639 1 chr1B.!!$F1 791
4 TraesCS1D01G259600 chr7B 89670416 89671046 630 False 608.0 608 84.122000 1027 1678 1 chr7B.!!$F1 651
5 TraesCS1D01G259600 chrUn 385968413 385969105 692 False 536.0 536 81.051000 1605 2313 1 chrUn.!!$F1 708
6 TraesCS1D01G259600 chr2B 294275468 294276698 1230 False 404.0 536 81.830000 1605 2865 2 chr2B.!!$F1 1260
7 TraesCS1D01G259600 chr2B 294365377 294366605 1228 False 403.0 536 81.775500 1605 2865 2 chr2B.!!$F3 1260
8 TraesCS1D01G259600 chr2B 294321621 294322848 1227 False 401.5 536 81.795500 1605 2865 2 chr2B.!!$F2 1260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 1022 0.167908 CACACACACACACACACACC 59.832 55.000 0.0 0.0 0.00 4.16 F
952 1027 0.249676 ACACACACACACACCCGTAA 59.750 50.000 0.0 0.0 0.00 3.18 F
1905 2089 0.319555 TGTCTGAAGAAGGTTCGGCG 60.320 55.000 0.0 0.0 0.00 6.46 F
3468 3801 0.396435 TTTCCCTGAGAAAGCTGCGA 59.604 50.000 0.0 0.0 39.60 5.10 F
3475 3808 1.399440 TGAGAAAGCTGCGATTGATGC 59.601 47.619 0.0 0.0 0.00 3.91 F
5120 5564 1.062002 CCACGACACAAGTCACACAAC 59.938 52.381 0.0 0.0 45.23 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2942 3271 1.262640 TTTGGGACGGAGGGAGTAGC 61.263 60.0 0.00 0.00 0.00 3.58 R
2944 3273 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.0 0.00 0.00 0.00 2.59 R
3815 4171 0.467290 TCCAACACCCCTGAAGCAAC 60.467 55.0 0.00 0.00 0.00 4.17 R
5056 5477 0.326618 ACTGCTACCCTGGTAGGCAT 60.327 55.0 21.71 9.63 45.87 4.40 R
5261 5936 0.659417 ATGTACGTTATCGGCGCTCG 60.659 55.0 7.64 9.90 41.85 5.03 R
6124 7049 0.830648 CCCGGTCCTGCTGAAATCTA 59.169 55.0 0.00 0.00 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.478837 CGGTAGATACTGGAGCAGGGA 60.479 57.143 0.00 0.00 35.51 4.20
31 32 2.158445 GGTAGATACTGGAGCAGGGAGA 60.158 54.545 0.00 0.00 35.51 3.71
42 43 1.021920 GCAGGGAGAAAAGGACGAGC 61.022 60.000 0.00 0.00 0.00 5.03
55 56 2.433145 CGAGCACATGTGAGCGGT 60.433 61.111 29.80 7.74 36.73 5.68
79 81 1.237533 CCCAAACCAAGGCAAATTGC 58.762 50.000 9.87 9.87 44.08 3.56
80 82 1.202794 CCCAAACCAAGGCAAATTGCT 60.203 47.619 18.04 0.99 44.28 3.91
82 84 2.145536 CAAACCAAGGCAAATTGCTCC 58.854 47.619 18.04 1.85 44.28 4.70
83 85 1.720781 AACCAAGGCAAATTGCTCCT 58.279 45.000 18.04 4.39 44.28 3.69
84 86 0.971386 ACCAAGGCAAATTGCTCCTG 59.029 50.000 18.04 11.74 44.28 3.86
230 242 2.745884 CCGCACGGCCAAGAATCA 60.746 61.111 2.24 0.00 0.00 2.57
253 265 6.978659 TCATATGATACGTCAGAGTTTTGGTC 59.021 38.462 0.00 0.00 37.87 4.02
271 283 2.500504 GGTCGATCTTATACCATCCCCC 59.499 54.545 0.00 0.00 33.28 5.40
323 341 1.340889 GCAAGGCAACACAGATTCCAA 59.659 47.619 0.00 0.00 41.41 3.53
406 430 1.302285 CAGCATCCTGTTCTGCCCT 59.698 57.895 0.00 0.00 39.22 5.19
528 558 2.959220 AAACTGCCTTTGTGCGCTGC 62.959 55.000 9.73 1.68 0.00 5.25
577 607 0.750911 CCGTTCGCCCTACTCCTACT 60.751 60.000 0.00 0.00 0.00 2.57
591 622 2.299297 CTCCTACTACCCCATAAAGGCG 59.701 54.545 0.00 0.00 35.39 5.52
600 631 1.526887 CATAAAGGCGGGCAGAGGA 59.473 57.895 3.78 0.00 0.00 3.71
606 637 0.540830 AGGCGGGCAGAGGATAGTAG 60.541 60.000 3.78 0.00 0.00 2.57
618 649 6.249192 CAGAGGATAGTAGTATCATCACCCA 58.751 44.000 26.08 0.00 45.20 4.51
624 655 3.898123 AGTAGTATCATCACCCATCGCTT 59.102 43.478 0.00 0.00 0.00 4.68
659 690 2.431683 GGCAGTGAAGTGGAGCCA 59.568 61.111 0.00 0.00 44.59 4.75
661 692 0.610232 GGCAGTGAAGTGGAGCCAAT 60.610 55.000 0.00 0.00 44.59 3.16
678 712 6.369065 GGAGCCAATCCTTTATCATTACTACG 59.631 42.308 0.00 0.00 45.64 3.51
718 777 3.552699 TGGTACGCGCATTATTGTTAGTC 59.447 43.478 5.73 0.00 0.00 2.59
721 780 2.534349 ACGCGCATTATTGTTAGTCTCG 59.466 45.455 5.73 0.00 0.00 4.04
822 887 1.741770 CTTGCGTCAGGTAGGTGCC 60.742 63.158 0.00 0.00 0.00 5.01
865 936 0.745486 TCCGCAACTCCATCTGCATG 60.745 55.000 0.00 0.00 38.52 4.06
867 938 1.650314 CGCAACTCCATCTGCATGCA 61.650 55.000 21.29 21.29 38.52 3.96
868 939 0.744874 GCAACTCCATCTGCATGCAT 59.255 50.000 22.97 3.95 38.48 3.96
932 1007 1.720805 TGACTGACACACACACACAC 58.279 50.000 0.00 0.00 0.00 3.82
933 1008 1.001406 TGACTGACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
934 1009 1.393539 GACTGACACACACACACACAC 59.606 52.381 0.00 0.00 0.00 3.82
939 1014 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
941 1016 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
942 1017 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
943 1018 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
945 1020 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
947 1022 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
948 1023 0.958382 ACACACACACACACACACCC 60.958 55.000 0.00 0.00 0.00 4.61
949 1024 1.743623 ACACACACACACACACCCG 60.744 57.895 0.00 0.00 0.00 5.28
950 1025 1.743623 CACACACACACACACCCGT 60.744 57.895 0.00 0.00 0.00 5.28
951 1026 0.460459 CACACACACACACACCCGTA 60.460 55.000 0.00 0.00 0.00 4.02
952 1027 0.249676 ACACACACACACACCCGTAA 59.750 50.000 0.00 0.00 0.00 3.18
953 1028 1.134340 ACACACACACACACCCGTAAT 60.134 47.619 0.00 0.00 0.00 1.89
954 1029 1.529438 CACACACACACACCCGTAATC 59.471 52.381 0.00 0.00 0.00 1.75
955 1030 1.153353 CACACACACACCCGTAATCC 58.847 55.000 0.00 0.00 0.00 3.01
956 1031 0.320073 ACACACACACCCGTAATCCG 60.320 55.000 0.00 0.00 0.00 4.18
1148 1230 4.135153 CGTCGCCAGGGACCTCAG 62.135 72.222 9.03 0.00 33.30 3.35
1331 1413 4.288531 GACGAGGTATGTGTACTATGTGC 58.711 47.826 0.00 0.00 0.00 4.57
1340 1422 5.666969 TGTGTACTATGTGCTGTTTGTTC 57.333 39.130 0.00 0.00 0.00 3.18
1438 1520 1.671379 GCTCAAGTTCGGGGTGGAC 60.671 63.158 0.00 0.00 0.00 4.02
1531 1613 2.099141 TGTGCTCAATCACTGCCTAC 57.901 50.000 0.00 0.00 37.81 3.18
1546 1628 3.476552 TGCCTACCAACTCTTTTGACTG 58.523 45.455 0.00 0.00 0.00 3.51
1557 1641 5.858381 ACTCTTTTGACTGCAGATGTTCTA 58.142 37.500 23.35 0.93 0.00 2.10
1558 1642 5.698545 ACTCTTTTGACTGCAGATGTTCTAC 59.301 40.000 23.35 1.83 0.00 2.59
1559 1643 5.858381 TCTTTTGACTGCAGATGTTCTACT 58.142 37.500 23.35 0.00 0.00 2.57
1576 1661 7.140705 TGTTCTACTTTTGTGAATGCATGAAG 58.859 34.615 0.00 1.18 0.00 3.02
1722 1811 1.609072 GTTTTGCTGAACCTGGACTCC 59.391 52.381 0.00 0.00 0.00 3.85
1776 1949 9.436957 AGATGGATCCGTCATATACAAAATTAC 57.563 33.333 31.14 3.68 34.59 1.89
1836 2011 5.524281 TCTTGTGTTTCATACAACAGCGTAA 59.476 36.000 0.00 0.00 38.80 3.18
1905 2089 0.319555 TGTCTGAAGAAGGTTCGGCG 60.320 55.000 0.00 0.00 0.00 6.46
1959 2146 0.823460 CAGGCCACCACAAAACACTT 59.177 50.000 5.01 0.00 0.00 3.16
1990 2177 3.119673 ACAAATTGTGACACGCAGTTCAA 60.120 39.130 0.00 0.00 41.61 2.69
1992 2179 3.988379 ATTGTGACACGCAGTTCAAAT 57.012 38.095 0.22 0.00 41.61 2.32
2184 2371 7.513190 TTGTGTTACTTCGATTTTGTTTTGG 57.487 32.000 0.00 0.00 0.00 3.28
2307 2494 9.778741 ACTATCATTTTAGAAACAGTGTCTTCA 57.221 29.630 0.00 0.00 0.00 3.02
2319 2506 5.431765 ACAGTGTCTTCACAATTCAGACTT 58.568 37.500 0.00 0.00 46.01 3.01
2320 2507 5.295292 ACAGTGTCTTCACAATTCAGACTTG 59.705 40.000 0.00 0.00 46.01 3.16
2321 2508 5.295292 CAGTGTCTTCACAATTCAGACTTGT 59.705 40.000 0.29 0.29 46.01 3.16
2322 2509 5.882557 AGTGTCTTCACAATTCAGACTTGTT 59.117 36.000 3.43 0.00 46.01 2.83
2323 2510 5.967674 GTGTCTTCACAATTCAGACTTGTTG 59.032 40.000 3.43 1.29 43.37 3.33
2324 2511 5.879777 TGTCTTCACAATTCAGACTTGTTGA 59.120 36.000 3.43 3.36 38.24 3.18
2325 2512 6.037500 TGTCTTCACAATTCAGACTTGTTGAG 59.962 38.462 3.43 5.38 38.24 3.02
2326 2513 6.037610 GTCTTCACAATTCAGACTTGTTGAGT 59.962 38.462 3.43 0.00 42.70 3.41
2327 2514 7.224753 GTCTTCACAATTCAGACTTGTTGAGTA 59.775 37.037 3.43 0.00 39.19 2.59
2328 2515 7.768582 TCTTCACAATTCAGACTTGTTGAGTAA 59.231 33.333 3.43 0.00 39.19 2.24
2329 2516 7.246674 TCACAATTCAGACTTGTTGAGTAAC 57.753 36.000 3.43 0.00 39.19 2.50
2330 2517 6.821160 TCACAATTCAGACTTGTTGAGTAACA 59.179 34.615 3.43 0.00 44.66 2.41
2331 2518 6.907212 CACAATTCAGACTTGTTGAGTAACAC 59.093 38.462 3.43 0.00 45.91 3.32
2332 2519 6.597672 ACAATTCAGACTTGTTGAGTAACACA 59.402 34.615 0.29 0.00 45.91 3.72
2333 2520 6.851222 ATTCAGACTTGTTGAGTAACACAG 57.149 37.500 0.00 0.00 45.91 3.66
2334 2521 4.119862 TCAGACTTGTTGAGTAACACAGC 58.880 43.478 0.00 0.00 45.91 4.40
2335 2522 4.122776 CAGACTTGTTGAGTAACACAGCT 58.877 43.478 0.00 0.00 45.91 4.24
2336 2523 4.572389 CAGACTTGTTGAGTAACACAGCTT 59.428 41.667 0.00 0.00 45.91 3.74
2337 2524 5.753438 CAGACTTGTTGAGTAACACAGCTTA 59.247 40.000 0.00 0.00 45.91 3.09
2338 2525 6.425114 CAGACTTGTTGAGTAACACAGCTTAT 59.575 38.462 0.00 0.00 45.91 1.73
2339 2526 7.598869 CAGACTTGTTGAGTAACACAGCTTATA 59.401 37.037 0.00 0.00 45.91 0.98
2340 2527 8.148351 AGACTTGTTGAGTAACACAGCTTATAA 58.852 33.333 0.00 0.00 45.91 0.98
2341 2528 8.671384 ACTTGTTGAGTAACACAGCTTATAAA 57.329 30.769 0.00 0.00 45.91 1.40
2342 2529 9.284968 ACTTGTTGAGTAACACAGCTTATAAAT 57.715 29.630 0.00 0.00 45.91 1.40
2350 2537 9.517609 AGTAACACAGCTTATAAATTAGACTCG 57.482 33.333 0.00 0.00 0.00 4.18
2351 2538 9.298774 GTAACACAGCTTATAAATTAGACTCGT 57.701 33.333 0.00 0.00 0.00 4.18
2352 2539 7.988904 ACACAGCTTATAAATTAGACTCGTC 57.011 36.000 0.00 0.00 0.00 4.20
2353 2540 7.544622 ACACAGCTTATAAATTAGACTCGTCA 58.455 34.615 0.00 0.00 0.00 4.35
2354 2541 8.033038 ACACAGCTTATAAATTAGACTCGTCAA 58.967 33.333 0.00 0.00 0.00 3.18
2355 2542 9.035607 CACAGCTTATAAATTAGACTCGTCAAT 57.964 33.333 0.00 0.00 0.00 2.57
2356 2543 9.035607 ACAGCTTATAAATTAGACTCGTCAATG 57.964 33.333 0.00 0.00 0.00 2.82
2357 2544 8.491152 CAGCTTATAAATTAGACTCGTCAATGG 58.509 37.037 0.00 0.00 0.00 3.16
2358 2545 7.171678 AGCTTATAAATTAGACTCGTCAATGGC 59.828 37.037 0.00 0.00 0.00 4.40
2359 2546 7.171678 GCTTATAAATTAGACTCGTCAATGGCT 59.828 37.037 0.00 0.00 0.00 4.75
2360 2547 8.958119 TTATAAATTAGACTCGTCAATGGCTT 57.042 30.769 0.00 0.00 0.00 4.35
2361 2548 5.803020 AAATTAGACTCGTCAATGGCTTC 57.197 39.130 0.00 0.00 0.00 3.86
2362 2549 4.744795 ATTAGACTCGTCAATGGCTTCT 57.255 40.909 0.00 0.00 0.00 2.85
2363 2550 4.537135 TTAGACTCGTCAATGGCTTCTT 57.463 40.909 0.00 0.00 0.00 2.52
2364 2551 5.654603 TTAGACTCGTCAATGGCTTCTTA 57.345 39.130 0.00 0.00 0.00 2.10
2365 2552 4.744795 AGACTCGTCAATGGCTTCTTAT 57.255 40.909 0.00 0.00 0.00 1.73
2366 2553 5.091261 AGACTCGTCAATGGCTTCTTATT 57.909 39.130 0.00 0.00 0.00 1.40
2367 2554 4.872691 AGACTCGTCAATGGCTTCTTATTG 59.127 41.667 0.00 0.00 36.00 1.90
2368 2555 3.941483 ACTCGTCAATGGCTTCTTATTGG 59.059 43.478 0.00 0.00 35.52 3.16
2369 2556 3.941483 CTCGTCAATGGCTTCTTATTGGT 59.059 43.478 0.00 0.00 35.52 3.67
2370 2557 5.092554 TCGTCAATGGCTTCTTATTGGTA 57.907 39.130 0.00 0.00 35.52 3.25
2371 2558 5.492895 TCGTCAATGGCTTCTTATTGGTAA 58.507 37.500 0.00 0.00 35.52 2.85
2372 2559 5.584649 TCGTCAATGGCTTCTTATTGGTAAG 59.415 40.000 0.00 0.00 38.93 2.34
2373 2560 5.584649 CGTCAATGGCTTCTTATTGGTAAGA 59.415 40.000 0.00 0.00 43.43 2.10
2374 2561 6.260936 CGTCAATGGCTTCTTATTGGTAAGAT 59.739 38.462 0.00 0.00 44.24 2.40
2375 2562 7.420800 GTCAATGGCTTCTTATTGGTAAGATG 58.579 38.462 0.00 3.51 44.24 2.90
2376 2563 7.067494 GTCAATGGCTTCTTATTGGTAAGATGT 59.933 37.037 10.72 0.00 44.24 3.06
2377 2564 8.271458 TCAATGGCTTCTTATTGGTAAGATGTA 58.729 33.333 10.72 4.22 44.24 2.29
2378 2565 8.902806 CAATGGCTTCTTATTGGTAAGATGTAA 58.097 33.333 10.72 3.45 44.24 2.41
2379 2566 9.646522 AATGGCTTCTTATTGGTAAGATGTAAT 57.353 29.630 10.72 0.00 44.24 1.89
2380 2567 8.677148 TGGCTTCTTATTGGTAAGATGTAATC 57.323 34.615 10.72 0.00 44.24 1.75
2423 2610 6.857777 AGAAAGAGTGTCTTCACAATTCAG 57.142 37.500 1.36 0.00 46.01 3.02
2424 2611 6.586344 AGAAAGAGTGTCTTCACAATTCAGA 58.414 36.000 1.36 0.00 46.01 3.27
2425 2612 6.481644 AGAAAGAGTGTCTTCACAATTCAGAC 59.518 38.462 1.36 0.00 46.01 3.51
2426 2613 5.543507 AGAGTGTCTTCACAATTCAGACT 57.456 39.130 0.00 0.00 46.01 3.24
2427 2614 5.923204 AGAGTGTCTTCACAATTCAGACTT 58.077 37.500 0.00 0.00 46.01 3.01
2428 2615 5.757320 AGAGTGTCTTCACAATTCAGACTTG 59.243 40.000 0.00 0.00 46.01 3.16
2429 2616 5.431765 AGTGTCTTCACAATTCAGACTTGT 58.568 37.500 0.29 0.29 46.01 3.16
2430 2617 5.882557 AGTGTCTTCACAATTCAGACTTGTT 59.117 36.000 3.43 0.00 46.01 2.83
2606 2922 4.488126 TCTATTTCTGCTTGTGCACAAC 57.512 40.909 27.96 22.67 45.31 3.32
2693 3013 6.029607 GCACATGTGTTACACTTCCAATATG 58.970 40.000 26.01 11.66 35.11 1.78
2695 3015 7.148323 GCACATGTGTTACACTTCCAATATGTA 60.148 37.037 26.01 0.00 35.11 2.29
2728 3048 9.502091 TCCATAGATGCATATTACAAGTAAACC 57.498 33.333 0.00 0.00 0.00 3.27
2729 3049 9.507329 CCATAGATGCATATTACAAGTAAACCT 57.493 33.333 0.00 0.00 0.00 3.50
2813 3141 7.168219 AGAGTTCTGGATATTTACTTGTGCAA 58.832 34.615 0.00 0.00 0.00 4.08
2884 3212 7.304735 TCAAAAGTGTAATCGATTCAATGGTG 58.695 34.615 15.25 12.31 0.00 4.17
2911 3239 6.831868 ACAGTAAGTTGGTATGTTTGACCTTT 59.168 34.615 0.00 0.00 37.88 3.11
2914 3242 6.391227 AAGTTGGTATGTTTGACCTTTCTG 57.609 37.500 0.00 0.00 37.88 3.02
2925 3253 3.843999 TGACCTTTCTGCACAAAAACAC 58.156 40.909 0.00 0.00 0.00 3.32
2928 3257 4.494484 ACCTTTCTGCACAAAAACACTTC 58.506 39.130 0.00 0.00 0.00 3.01
2929 3258 4.220602 ACCTTTCTGCACAAAAACACTTCT 59.779 37.500 0.00 0.00 0.00 2.85
2932 3261 6.811170 CCTTTCTGCACAAAAACACTTCTTTA 59.189 34.615 0.00 0.00 0.00 1.85
2944 3273 8.465273 AAAACACTTCTTTAATCCTAACTGCT 57.535 30.769 0.00 0.00 0.00 4.24
2945 3274 9.569122 AAAACACTTCTTTAATCCTAACTGCTA 57.431 29.630 0.00 0.00 0.00 3.49
2946 3275 8.549338 AACACTTCTTTAATCCTAACTGCTAC 57.451 34.615 0.00 0.00 0.00 3.58
2947 3276 7.908453 ACACTTCTTTAATCCTAACTGCTACT 58.092 34.615 0.00 0.00 0.00 2.57
2948 3277 8.035984 ACACTTCTTTAATCCTAACTGCTACTC 58.964 37.037 0.00 0.00 0.00 2.59
2949 3278 7.492994 CACTTCTTTAATCCTAACTGCTACTCC 59.507 40.741 0.00 0.00 0.00 3.85
2950 3279 6.481434 TCTTTAATCCTAACTGCTACTCCC 57.519 41.667 0.00 0.00 0.00 4.30
2951 3280 6.203072 TCTTTAATCCTAACTGCTACTCCCT 58.797 40.000 0.00 0.00 0.00 4.20
2952 3281 6.324254 TCTTTAATCCTAACTGCTACTCCCTC 59.676 42.308 0.00 0.00 0.00 4.30
2953 3282 2.456073 TCCTAACTGCTACTCCCTCC 57.544 55.000 0.00 0.00 0.00 4.30
2954 3283 1.033574 CCTAACTGCTACTCCCTCCG 58.966 60.000 0.00 0.00 0.00 4.63
2955 3284 1.685491 CCTAACTGCTACTCCCTCCGT 60.685 57.143 0.00 0.00 0.00 4.69
2956 3285 1.677052 CTAACTGCTACTCCCTCCGTC 59.323 57.143 0.00 0.00 0.00 4.79
2957 3286 0.971447 AACTGCTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
2958 3287 2.043248 TGCTACTCCCTCCGTCCC 60.043 66.667 0.00 0.00 0.00 4.46
2959 3288 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
2960 3289 1.684734 GCTACTCCCTCCGTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
2961 3290 1.262640 GCTACTCCCTCCGTCCCAAA 61.263 60.000 0.00 0.00 0.00 3.28
2962 3291 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2963 3292 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
2964 3293 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2965 3294 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2966 3295 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2967 3296 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2968 3297 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2969 3298 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2970 3299 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2971 3300 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2972 3301 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2973 3302 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2974 3303 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2975 3304 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
2976 3305 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
2977 3306 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
2978 3307 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2979 3308 7.589954 CGTCCCAAAATAAGTGTCTTAACTTTG 59.410 37.037 14.00 14.00 40.77 2.77
2980 3309 8.410912 GTCCCAAAATAAGTGTCTTAACTTTGT 58.589 33.333 16.72 0.00 40.77 2.83
2981 3310 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
2982 3311 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
3017 3346 7.744087 ACAAATTTGTGCTATAGTTGAGACA 57.256 32.000 22.71 0.00 40.49 3.41
3018 3347 7.584987 ACAAATTTGTGCTATAGTTGAGACAC 58.415 34.615 22.71 0.63 40.49 3.67
3019 3348 7.445402 ACAAATTTGTGCTATAGTTGAGACACT 59.555 33.333 22.71 0.00 40.49 3.55
3020 3349 7.986085 AATTTGTGCTATAGTTGAGACACTT 57.014 32.000 0.84 0.00 0.00 3.16
3021 3350 9.502091 AAATTTGTGCTATAGTTGAGACACTTA 57.498 29.630 0.84 0.00 0.00 2.24
3022 3351 9.672673 AATTTGTGCTATAGTTGAGACACTTAT 57.327 29.630 0.84 0.00 0.00 1.73
3023 3352 9.672673 ATTTGTGCTATAGTTGAGACACTTATT 57.327 29.630 0.84 0.00 0.00 1.40
3024 3353 9.502091 TTTGTGCTATAGTTGAGACACTTATTT 57.498 29.630 0.84 0.00 0.00 1.40
3025 3354 9.502091 TTGTGCTATAGTTGAGACACTTATTTT 57.498 29.630 0.84 0.00 0.00 1.82
3026 3355 8.935844 TGTGCTATAGTTGAGACACTTATTTTG 58.064 33.333 0.84 0.00 0.00 2.44
3027 3356 8.391106 GTGCTATAGTTGAGACACTTATTTTGG 58.609 37.037 0.84 0.00 0.00 3.28
3028 3357 7.552687 TGCTATAGTTGAGACACTTATTTTGGG 59.447 37.037 0.84 0.00 0.00 4.12
3029 3358 7.769044 GCTATAGTTGAGACACTTATTTTGGGA 59.231 37.037 0.84 0.00 0.00 4.37
3030 3359 7.923414 ATAGTTGAGACACTTATTTTGGGAC 57.077 36.000 0.00 0.00 0.00 4.46
3031 3360 5.690865 AGTTGAGACACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
3032 3361 5.765182 AGTTGAGACACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
3033 3362 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
3034 3363 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
3035 3364 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
3036 3365 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
3037 3366 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
3038 3367 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
3051 3380 4.090819 ACAGAGGGAGTACTTCTTTCCTC 58.909 47.826 15.90 15.90 42.11 3.71
3057 3386 4.410555 GGGAGTACTTCTTTCCTCCATCAT 59.589 45.833 0.01 0.00 44.34 2.45
3116 3448 9.783081 AGTTGCATCATATGATATGTTTACTCA 57.217 29.630 17.77 0.00 32.63 3.41
3149 3481 5.475719 CAGAATGTTCTTCATTGGCACATT 58.524 37.500 0.00 0.00 45.49 2.71
3200 3532 9.893305 GAAATACCTTCATACCCAAAATTATCG 57.107 33.333 0.00 0.00 33.86 2.92
3249 3581 9.630098 AAAAATATACAATCAATGATGCGATCC 57.370 29.630 0.00 0.00 0.00 3.36
3257 3589 3.065648 TCAATGATGCGATCCACATTGTG 59.934 43.478 21.38 9.92 45.23 3.33
3269 3601 3.066621 TCCACATTGTGCAGTGAGTTTTC 59.933 43.478 11.41 0.00 37.97 2.29
3281 3613 5.220931 GCAGTGAGTTTTCTCTTGTGTCATT 60.221 40.000 0.00 0.00 46.30 2.57
3468 3801 0.396435 TTTCCCTGAGAAAGCTGCGA 59.604 50.000 0.00 0.00 39.60 5.10
3475 3808 1.399440 TGAGAAAGCTGCGATTGATGC 59.601 47.619 0.00 0.00 0.00 3.91
3498 3831 4.822350 CGGTCCAGAGTAGATATCACTTCA 59.178 45.833 5.32 0.00 0.00 3.02
3519 3852 4.162888 TCACTATGCTGTCTGACATTCCAT 59.837 41.667 11.45 15.13 0.00 3.41
3674 4007 1.438651 GCAACTGTAATGCTCCGTGA 58.561 50.000 0.00 0.00 40.64 4.35
3685 4018 1.414919 TGCTCCGTGACCTACAAGTTT 59.585 47.619 0.00 0.00 0.00 2.66
3731 4064 6.413783 TCTTGTTGTACTGGATACTCACAA 57.586 37.500 0.00 0.00 36.28 3.33
3928 4284 2.683968 TCGACGGAATTCTTTCAGGTG 58.316 47.619 5.23 0.00 32.09 4.00
4218 4622 5.734498 GCGCAGAAAATCTACATGTGTTAAG 59.266 40.000 9.11 0.00 0.00 1.85
4332 4736 9.936759 TTTTTGGAAAATAAGATGTGATAACCC 57.063 29.630 0.00 0.00 0.00 4.11
4339 4743 9.762381 AAAATAAGATGTGATAACCCTTGGTAA 57.238 29.630 0.00 0.00 33.12 2.85
4478 4882 4.511454 GCAATTTCACATGGCTACGAGATA 59.489 41.667 0.00 0.00 0.00 1.98
4481 4885 7.095229 GCAATTTCACATGGCTACGAGATAATA 60.095 37.037 0.00 0.00 0.00 0.98
4544 4948 5.188555 TCAGATCTTTCTACTGGCTGTTGAT 59.811 40.000 9.17 3.79 31.12 2.57
4548 4952 7.550906 AGATCTTTCTACTGGCTGTTGATAAAC 59.449 37.037 9.17 0.00 31.12 2.01
4549 4953 6.530120 TCTTTCTACTGGCTGTTGATAAACA 58.470 36.000 9.17 0.00 31.12 2.83
4550 4954 6.426937 TCTTTCTACTGGCTGTTGATAAACAC 59.573 38.462 9.17 0.00 31.12 3.32
4551 4955 5.483685 TCTACTGGCTGTTGATAAACACT 57.516 39.130 1.31 0.00 0.00 3.55
4552 4956 5.865085 TCTACTGGCTGTTGATAAACACTT 58.135 37.500 1.31 0.00 0.00 3.16
4634 5050 6.120220 GGTGCATAACTGGTATTTCCTAACT 58.880 40.000 0.00 0.00 37.07 2.24
4638 5054 4.650972 AACTGGTATTTCCTAACTGCCA 57.349 40.909 0.00 0.00 37.07 4.92
4681 5097 3.942130 AAATTAAGAGGCACAACCAGC 57.058 42.857 0.00 0.00 43.14 4.85
4780 5201 1.400846 GCTGGTCTGAGATGCATTGTG 59.599 52.381 0.00 0.00 0.00 3.33
4846 5267 8.327271 ACATGGGAAGGATTCTATATGAATGAG 58.673 37.037 0.00 0.00 46.56 2.90
4989 5410 3.755378 GCAGCTGCAGGTATAATAAGCAT 59.245 43.478 33.36 0.00 41.59 3.79
5056 5477 4.074259 AGCAGACATTTGACATGCAGTTA 58.926 39.130 0.00 0.00 39.34 2.24
5071 5493 3.753294 CAGTTATGCCTACCAGGGTAG 57.247 52.381 16.90 16.90 45.50 3.18
5072 5494 2.047830 AGTTATGCCTACCAGGGTAGC 58.952 52.381 18.16 14.07 44.80 3.58
5081 5503 3.262405 CCTACCAGGGTAGCAGTTACAAA 59.738 47.826 18.16 0.00 44.80 2.83
5083 5505 4.173290 ACCAGGGTAGCAGTTACAAAAA 57.827 40.909 0.00 0.00 33.73 1.94
5111 5533 4.209911 CACATCTATATGCCACGACACAAG 59.790 45.833 0.00 0.00 36.50 3.16
5112 5534 4.141937 ACATCTATATGCCACGACACAAGT 60.142 41.667 0.00 0.00 36.50 3.16
5120 5564 1.062002 CCACGACACAAGTCACACAAC 59.938 52.381 0.00 0.00 45.23 3.32
5124 5568 2.351418 CGACACAAGTCACACAACACAT 59.649 45.455 0.00 0.00 45.23 3.21
5131 5575 7.066404 ACACAAGTCACACAACACATTATAACA 59.934 33.333 0.00 0.00 0.00 2.41
5141 5585 9.759259 CACAACACATTATAACATGAAGTAGTG 57.241 33.333 0.00 2.03 0.00 2.74
5142 5586 8.946085 ACAACACATTATAACATGAAGTAGTGG 58.054 33.333 0.00 0.00 0.00 4.00
5144 5588 8.718102 ACACATTATAACATGAAGTAGTGGTC 57.282 34.615 0.00 0.00 0.00 4.02
5178 5622 7.290061 TCATCTAAAACTAGGGCAATAGCATT 58.710 34.615 0.00 0.00 44.61 3.56
5180 5624 7.954666 TCTAAAACTAGGGCAATAGCATTTT 57.045 32.000 0.00 0.00 44.61 1.82
5181 5625 7.771183 TCTAAAACTAGGGCAATAGCATTTTG 58.229 34.615 0.00 0.00 44.61 2.44
5182 5626 6.358974 AAAACTAGGGCAATAGCATTTTGT 57.641 33.333 0.00 0.00 44.61 2.83
5183 5627 7.475137 AAAACTAGGGCAATAGCATTTTGTA 57.525 32.000 0.00 0.00 44.61 2.41
5185 5629 6.699575 ACTAGGGCAATAGCATTTTGTAAG 57.300 37.500 0.00 0.00 44.61 2.34
5187 5631 5.582689 AGGGCAATAGCATTTTGTAAGTC 57.417 39.130 0.00 0.00 44.61 3.01
5188 5632 4.402474 AGGGCAATAGCATTTTGTAAGTCC 59.598 41.667 0.00 0.00 44.61 3.85
5189 5633 4.159506 GGGCAATAGCATTTTGTAAGTCCA 59.840 41.667 0.00 0.00 44.61 4.02
5190 5634 5.163416 GGGCAATAGCATTTTGTAAGTCCAT 60.163 40.000 0.00 0.00 44.61 3.41
5197 5641 7.675962 AGCATTTTGTAAGTCCATAAACGTA 57.324 32.000 0.00 0.00 0.00 3.57
5198 5642 7.524065 AGCATTTTGTAAGTCCATAAACGTAC 58.476 34.615 0.00 0.00 35.49 3.67
5199 5643 7.173562 AGCATTTTGTAAGTCCATAAACGTACA 59.826 33.333 0.00 0.00 40.67 2.90
5200 5644 7.480542 GCATTTTGTAAGTCCATAAACGTACAG 59.519 37.037 0.00 0.00 42.35 2.74
5202 5646 8.436046 TTTTGTAAGTCCATAAACGTACAGTT 57.564 30.769 0.00 0.00 42.35 3.16
5203 5647 9.539825 TTTTGTAAGTCCATAAACGTACAGTTA 57.460 29.630 0.00 0.00 42.35 2.24
5204 5648 9.539825 TTTGTAAGTCCATAAACGTACAGTTAA 57.460 29.630 0.00 0.00 42.35 2.01
5206 5650 6.716898 AAGTCCATAAACGTACAGTTAAGC 57.283 37.500 0.00 0.00 43.37 3.09
5215 5890 4.878439 ACGTACAGTTAAGCATCTCACAA 58.122 39.130 0.00 0.00 0.00 3.33
5268 5943 1.855360 CTATCTTTTGAGTCGAGCGCC 59.145 52.381 2.29 0.00 0.00 6.53
5269 5944 1.078759 ATCTTTTGAGTCGAGCGCCG 61.079 55.000 2.29 8.02 40.25 6.46
5270 5945 1.733041 CTTTTGAGTCGAGCGCCGA 60.733 57.895 15.44 15.44 46.35 5.54
5278 6031 1.010797 TCGAGCGCCGATAACGTAC 60.011 57.895 15.44 0.00 43.23 3.67
5283 6036 0.776451 GCGCCGATAACGTACATGAG 59.224 55.000 0.00 0.00 37.88 2.90
5284 6037 1.405461 CGCCGATAACGTACATGAGG 58.595 55.000 0.00 0.00 37.88 3.86
5307 6060 7.109501 AGGAAATTTTAGTTTTGGTTGCTTGT 58.890 30.769 0.00 0.00 0.00 3.16
5308 6061 7.065683 AGGAAATTTTAGTTTTGGTTGCTTGTG 59.934 33.333 0.00 0.00 0.00 3.33
5340 6152 9.391006 TCGCTTTATAAGTTATCAAAGGAACAT 57.609 29.630 17.33 0.00 0.00 2.71
5426 6344 3.121279 ACATATAGCATAAACGCGCGAAG 59.879 43.478 39.36 20.53 36.85 3.79
5462 6380 3.879998 TGTTGCTTTGACTCACCAGTTA 58.120 40.909 0.00 0.00 30.63 2.24
5495 6413 4.803426 GAGCGGCTGTGGACTCCG 62.803 72.222 7.50 6.67 45.46 4.63
5567 6485 2.275134 TCAGGTGCTTGCTGAATGAA 57.725 45.000 0.00 0.00 0.00 2.57
5648 6566 3.116096 TCCTGTGTAAGGCAGTAGGAT 57.884 47.619 0.00 0.00 46.92 3.24
5704 6624 0.749454 AAACATCAGCCGAGGCATCC 60.749 55.000 17.18 0.00 44.88 3.51
5809 6729 2.568623 ATTGCGTCCCTCTTTCAACT 57.431 45.000 0.00 0.00 0.00 3.16
5857 6777 3.068024 TGCGCTCCTGTTTCAAGAAAATT 59.932 39.130 9.73 0.00 31.33 1.82
5882 6807 4.956075 ACCCAAATAACTGCCTGGATAAAG 59.044 41.667 0.00 0.00 0.00 1.85
6107 7032 1.723220 GCGAGGGTTTCCAGTTAGAC 58.277 55.000 0.00 0.00 34.83 2.59
6135 7060 1.565759 ACAGGGCCATAGATTTCAGCA 59.434 47.619 6.18 0.00 0.00 4.41
6253 7180 1.167781 AAGTACGGGTTGCCGGTTTG 61.168 55.000 1.90 0.00 38.10 2.93
6263 7190 0.390860 TGCCGGTTTGTCCCAATTTG 59.609 50.000 1.90 0.00 0.00 2.32
6267 7194 3.492829 GCCGGTTTGTCCCAATTTGTTAA 60.493 43.478 1.90 0.00 0.00 2.01
6273 7200 7.359933 CGGTTTGTCCCAATTTGTTAATTCATG 60.360 37.037 0.00 0.00 31.63 3.07
6345 9711 4.843220 AAAGGTATGTCGGTCCGTATAG 57.157 45.455 11.88 0.00 0.00 1.31
6483 9851 8.513090 GTTCATTACTTCAAAAATATTCGTCGC 58.487 33.333 0.00 0.00 0.00 5.19
6484 9852 7.744059 TCATTACTTCAAAAATATTCGTCGCA 58.256 30.769 0.00 0.00 0.00 5.10
6529 9897 5.713389 TGAACGACTCCTAACCATTTAGAGA 59.287 40.000 0.00 0.00 37.49 3.10
6535 9903 5.105146 ACTCCTAACCATTTAGAGACTGCAG 60.105 44.000 13.48 13.48 37.49 4.41
6539 9907 6.825721 CCTAACCATTTAGAGACTGCAGAATT 59.174 38.462 23.35 4.76 37.49 2.17
6614 9984 8.604890 GCTCAATCACTTAACACTTTAGGATAC 58.395 37.037 0.00 0.00 0.00 2.24
6616 9986 8.308931 TCAATCACTTAACACTTTAGGATACGT 58.691 33.333 0.00 0.00 46.39 3.57
6617 9987 8.932791 CAATCACTTAACACTTTAGGATACGTT 58.067 33.333 0.00 0.00 46.39 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.885233 GCTCCAGTATCTACCGGGTAC 59.115 57.143 6.32 3.37 0.00 3.34
5 6 1.496001 TGCTCCAGTATCTACCGGGTA 59.504 52.381 6.32 6.73 0.00 3.69
6 7 0.260816 TGCTCCAGTATCTACCGGGT 59.739 55.000 6.32 4.46 0.00 5.28
7 8 0.962489 CTGCTCCAGTATCTACCGGG 59.038 60.000 6.32 0.00 0.00 5.73
8 9 0.962489 CCTGCTCCAGTATCTACCGG 59.038 60.000 0.00 0.00 0.00 5.28
9 10 0.962489 CCCTGCTCCAGTATCTACCG 59.038 60.000 0.00 0.00 0.00 4.02
10 11 2.158445 TCTCCCTGCTCCAGTATCTACC 60.158 54.545 0.00 0.00 0.00 3.18
11 12 3.231207 TCTCCCTGCTCCAGTATCTAC 57.769 52.381 0.00 0.00 0.00 2.59
12 13 3.973472 TTCTCCCTGCTCCAGTATCTA 57.027 47.619 0.00 0.00 0.00 1.98
13 14 2.856760 TTCTCCCTGCTCCAGTATCT 57.143 50.000 0.00 0.00 0.00 1.98
14 15 3.432890 CCTTTTCTCCCTGCTCCAGTATC 60.433 52.174 0.00 0.00 0.00 2.24
15 16 2.507471 CCTTTTCTCCCTGCTCCAGTAT 59.493 50.000 0.00 0.00 0.00 2.12
16 17 1.909302 CCTTTTCTCCCTGCTCCAGTA 59.091 52.381 0.00 0.00 0.00 2.74
23 24 1.021920 GCTCGTCCTTTTCTCCCTGC 61.022 60.000 0.00 0.00 0.00 4.85
29 30 2.146342 CACATGTGCTCGTCCTTTTCT 58.854 47.619 13.94 0.00 0.00 2.52
31 32 2.146342 CTCACATGTGCTCGTCCTTTT 58.854 47.619 21.38 0.00 0.00 2.27
42 43 2.393768 GGCTCACCGCTCACATGTG 61.394 63.158 20.18 20.18 39.13 3.21
55 56 2.203625 GCCTTGGTTTGGGGCTCA 60.204 61.111 0.00 0.00 42.31 4.26
79 81 1.530013 CCAAAAGGGCAGTGCAGGAG 61.530 60.000 18.61 1.02 0.00 3.69
80 82 1.531365 CCAAAAGGGCAGTGCAGGA 60.531 57.895 18.61 0.00 0.00 3.86
182 188 2.954753 CTTTGTCGTGCGTGGAGGC 61.955 63.158 0.00 0.00 0.00 4.70
183 189 1.594293 ACTTTGTCGTGCGTGGAGG 60.594 57.895 0.00 0.00 0.00 4.30
230 242 5.977725 CGACCAAAACTCTGACGTATCATAT 59.022 40.000 0.00 0.00 33.22 1.78
253 265 4.868268 TCTAGGGGGATGGTATAAGATCG 58.132 47.826 0.00 0.00 0.00 3.69
271 283 2.097038 GCACACGCACCTGCTCTAG 61.097 63.158 0.00 0.00 39.32 2.43
311 329 8.370940 ACGATTGATATATCTTGGAATCTGTGT 58.629 33.333 13.79 5.79 0.00 3.72
323 341 3.452627 GCCAGGGGACGATTGATATATCT 59.547 47.826 13.79 0.00 0.00 1.98
406 430 2.375014 TGTCTGGTGAGTGGTGACTA 57.625 50.000 0.00 0.00 30.16 2.59
529 559 2.666190 TTGACGAGCAGCACCAGC 60.666 61.111 0.00 0.00 42.56 4.85
530 560 2.320587 GGTTGACGAGCAGCACCAG 61.321 63.158 0.00 0.00 0.00 4.00
531 561 2.280797 GGTTGACGAGCAGCACCA 60.281 61.111 0.00 0.00 0.00 4.17
532 562 2.029844 GAGGTTGACGAGCAGCACC 61.030 63.158 0.00 0.00 0.00 5.01
577 607 1.990160 CTGCCCGCCTTTATGGGGTA 61.990 60.000 0.00 0.00 46.12 3.69
591 622 5.126384 GTGATGATACTACTATCCTCTGCCC 59.874 48.000 0.00 0.00 29.63 5.36
600 631 5.265191 AGCGATGGGTGATGATACTACTAT 58.735 41.667 0.00 0.00 0.00 2.12
606 637 3.393089 AGAAGCGATGGGTGATGATAC 57.607 47.619 0.00 0.00 0.00 2.24
618 649 3.008485 ACTTTTGGAGGAGAAGAAGCGAT 59.992 43.478 0.00 0.00 0.00 4.58
678 712 5.164061 CGTACCAACCACTCGTAATAACAAC 60.164 44.000 0.00 0.00 0.00 3.32
718 777 2.266055 GTTGGGAGTGGAGGCGAG 59.734 66.667 0.00 0.00 0.00 5.03
721 780 3.256960 TGGGTTGGGAGTGGAGGC 61.257 66.667 0.00 0.00 0.00 4.70
812 877 2.446036 GGGATCCGGCACCTACCT 60.446 66.667 5.45 0.00 0.00 3.08
880 951 5.740099 GCAGAACTAGACGAGTAGAATGAAC 59.260 44.000 0.00 0.00 37.44 3.18
929 1004 0.958382 GGGTGTGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
931 1006 1.743623 CGGGTGTGTGTGTGTGTGT 60.744 57.895 0.00 0.00 0.00 3.72
932 1007 0.460459 TACGGGTGTGTGTGTGTGTG 60.460 55.000 0.00 0.00 0.00 3.82
933 1008 0.249676 TTACGGGTGTGTGTGTGTGT 59.750 50.000 0.00 0.00 0.00 3.72
934 1009 1.529438 GATTACGGGTGTGTGTGTGTG 59.471 52.381 0.00 0.00 0.00 3.82
948 1023 1.447838 ACAGCACAGCCGGATTACG 60.448 57.895 5.05 0.00 43.80 3.18
949 1024 1.982073 GCACAGCACAGCCGGATTAC 61.982 60.000 5.05 0.00 0.00 1.89
950 1025 1.745115 GCACAGCACAGCCGGATTA 60.745 57.895 5.05 0.00 0.00 1.75
951 1026 3.058160 GCACAGCACAGCCGGATT 61.058 61.111 5.05 0.00 0.00 3.01
952 1027 4.334118 TGCACAGCACAGCCGGAT 62.334 61.111 5.05 0.00 31.71 4.18
953 1028 4.994471 CTGCACAGCACAGCCGGA 62.994 66.667 5.05 0.00 33.79 5.14
955 1030 3.881952 TACCTGCACAGCACAGCCG 62.882 63.158 0.00 0.00 33.79 5.52
956 1031 2.032528 TACCTGCACAGCACAGCC 59.967 61.111 0.00 0.00 33.79 4.85
964 1039 4.697756 GGTGGCGCTACCTGCACA 62.698 66.667 33.23 5.04 43.06 4.57
1331 1413 1.370900 GCCGCAGCTGAACAAACAG 60.371 57.895 20.43 0.00 40.43 3.16
1438 1520 0.914551 CGGTCAGCTTGTACGATTCG 59.085 55.000 4.14 4.14 0.00 3.34
1531 1613 3.567164 ACATCTGCAGTCAAAAGAGTTGG 59.433 43.478 14.67 0.00 0.00 3.77
1546 1628 5.570589 GCATTCACAAAAGTAGAACATCTGC 59.429 40.000 0.00 0.00 0.00 4.26
1557 1641 5.987347 CCTTTCTTCATGCATTCACAAAAGT 59.013 36.000 0.00 0.00 0.00 2.66
1558 1642 6.218019 TCCTTTCTTCATGCATTCACAAAAG 58.782 36.000 0.00 4.12 0.00 2.27
1559 1643 6.040729 TCTCCTTTCTTCATGCATTCACAAAA 59.959 34.615 0.00 0.00 0.00 2.44
1576 1661 7.851387 AAAATAGGATTTCGTCTCTCCTTTC 57.149 36.000 0.00 0.00 39.99 2.62
1747 1836 6.419484 TTGTATATGACGGATCCATCTGTT 57.581 37.500 13.41 0.00 45.91 3.16
1905 2089 7.907214 ACAAGAATGAGGTACTGTTATTGTC 57.093 36.000 0.00 0.00 39.31 3.18
1959 2146 3.057876 GTGTCACAATTTGTATGGCGGAA 60.058 43.478 0.86 0.00 0.00 4.30
1990 2177 5.928264 GCCTGCAAAATGTAGAAAACTGATT 59.072 36.000 0.00 0.00 31.36 2.57
1992 2179 4.261994 GGCCTGCAAAATGTAGAAAACTGA 60.262 41.667 0.00 0.00 31.36 3.41
2184 2371 3.606687 CCCAATGTAGTCCAGTTACACC 58.393 50.000 0.00 0.00 34.15 4.16
2283 2470 9.554395 TGTGAAGACACTGTTTCTAAAATGATA 57.446 29.630 0.00 0.00 46.07 2.15
2307 2494 6.597672 TGTGTTACTCAACAAGTCTGAATTGT 59.402 34.615 16.84 16.84 45.99 2.71
2308 2495 7.015226 TGTGTTACTCAACAAGTCTGAATTG 57.985 36.000 15.51 15.51 45.99 2.32
2324 2511 9.517609 CGAGTCTAATTTATAAGCTGTGTTACT 57.482 33.333 0.00 0.00 0.00 2.24
2325 2512 9.298774 ACGAGTCTAATTTATAAGCTGTGTTAC 57.701 33.333 0.00 0.00 0.00 2.50
2326 2513 9.512435 GACGAGTCTAATTTATAAGCTGTGTTA 57.488 33.333 0.00 0.00 0.00 2.41
2327 2514 8.033038 TGACGAGTCTAATTTATAAGCTGTGTT 58.967 33.333 4.78 0.00 0.00 3.32
2328 2515 7.544622 TGACGAGTCTAATTTATAAGCTGTGT 58.455 34.615 4.78 0.00 0.00 3.72
2329 2516 7.987268 TGACGAGTCTAATTTATAAGCTGTG 57.013 36.000 4.78 0.00 0.00 3.66
2330 2517 9.035607 CATTGACGAGTCTAATTTATAAGCTGT 57.964 33.333 4.78 0.00 0.00 4.40
2331 2518 8.491152 CCATTGACGAGTCTAATTTATAAGCTG 58.509 37.037 4.78 0.00 0.00 4.24
2332 2519 7.171678 GCCATTGACGAGTCTAATTTATAAGCT 59.828 37.037 4.78 0.00 0.00 3.74
2333 2520 7.171678 AGCCATTGACGAGTCTAATTTATAAGC 59.828 37.037 4.78 0.00 0.00 3.09
2334 2521 8.594881 AGCCATTGACGAGTCTAATTTATAAG 57.405 34.615 4.78 0.00 0.00 1.73
2335 2522 8.958119 AAGCCATTGACGAGTCTAATTTATAA 57.042 30.769 4.78 0.00 0.00 0.98
2336 2523 8.421784 AGAAGCCATTGACGAGTCTAATTTATA 58.578 33.333 4.78 0.00 0.00 0.98
2337 2524 7.275920 AGAAGCCATTGACGAGTCTAATTTAT 58.724 34.615 4.78 0.00 0.00 1.40
2338 2525 6.640518 AGAAGCCATTGACGAGTCTAATTTA 58.359 36.000 4.78 0.00 0.00 1.40
2339 2526 5.491982 AGAAGCCATTGACGAGTCTAATTT 58.508 37.500 4.78 0.00 0.00 1.82
2340 2527 5.091261 AGAAGCCATTGACGAGTCTAATT 57.909 39.130 4.78 0.00 0.00 1.40
2341 2528 4.744795 AGAAGCCATTGACGAGTCTAAT 57.255 40.909 4.78 0.97 0.00 1.73
2342 2529 4.537135 AAGAAGCCATTGACGAGTCTAA 57.463 40.909 4.78 0.00 0.00 2.10
2343 2530 5.854010 ATAAGAAGCCATTGACGAGTCTA 57.146 39.130 4.78 0.00 0.00 2.59
2344 2531 4.744795 ATAAGAAGCCATTGACGAGTCT 57.255 40.909 4.78 0.00 0.00 3.24
2345 2532 4.034510 CCAATAAGAAGCCATTGACGAGTC 59.965 45.833 0.00 0.00 34.69 3.36
2346 2533 3.941483 CCAATAAGAAGCCATTGACGAGT 59.059 43.478 0.00 0.00 34.69 4.18
2347 2534 3.941483 ACCAATAAGAAGCCATTGACGAG 59.059 43.478 0.00 0.00 34.69 4.18
2348 2535 3.950397 ACCAATAAGAAGCCATTGACGA 58.050 40.909 0.00 0.00 34.69 4.20
2349 2536 5.584649 TCTTACCAATAAGAAGCCATTGACG 59.415 40.000 0.00 0.00 43.14 4.35
2391 2578 9.996554 TGTGAAGACACTCTTTCTAAAATGATA 57.003 29.630 0.00 0.00 46.07 2.15
2392 2579 8.908786 TGTGAAGACACTCTTTCTAAAATGAT 57.091 30.769 0.00 0.00 46.07 2.45
2393 2580 8.731275 TTGTGAAGACACTCTTTCTAAAATGA 57.269 30.769 0.00 0.00 46.07 2.57
2394 2581 9.956720 AATTGTGAAGACACTCTTTCTAAAATG 57.043 29.630 0.00 0.00 46.07 2.32
2396 2583 9.173021 TGAATTGTGAAGACACTCTTTCTAAAA 57.827 29.630 0.00 0.00 46.07 1.52
2402 2589 6.352516 AGTCTGAATTGTGAAGACACTCTTT 58.647 36.000 4.99 0.00 46.07 2.52
2405 2592 5.525378 ACAAGTCTGAATTGTGAAGACACTC 59.475 40.000 21.07 0.00 46.07 3.51
2408 2595 5.879777 TCAACAAGTCTGAATTGTGAAGACA 59.120 36.000 22.22 2.81 42.28 3.41
2410 2597 6.115446 ACTCAACAAGTCTGAATTGTGAAGA 58.885 36.000 26.02 20.76 39.91 2.87
2411 2598 6.369059 ACTCAACAAGTCTGAATTGTGAAG 57.631 37.500 22.22 21.68 39.91 3.02
2423 2610 6.787085 ATAAGCTGTGTTACTCAACAAGTC 57.213 37.500 0.00 0.00 45.99 3.01
2424 2611 8.671384 TTTATAAGCTGTGTTACTCAACAAGT 57.329 30.769 0.00 0.00 45.99 3.16
2727 3047 9.323985 TCAAAACCTTAACATGAAAAATCAAGG 57.676 29.630 0.00 3.75 37.63 3.61
2730 3050 9.658799 TGTTCAAAACCTTAACATGAAAAATCA 57.341 25.926 0.00 0.00 32.36 2.57
2813 3141 3.192541 TGCGGTATCTGCAACATACAT 57.807 42.857 14.49 0.00 39.87 2.29
2848 3176 3.782656 ACACTTTTGATTACCGGGACT 57.217 42.857 6.32 0.00 0.00 3.85
2884 3212 6.932960 AGGTCAAACATACCAACTTACTGTAC 59.067 38.462 0.00 0.00 39.64 2.90
2911 3239 6.978080 GGATTAAAGAAGTGTTTTTGTGCAGA 59.022 34.615 0.00 0.00 0.00 4.26
2914 3242 8.752254 GTTAGGATTAAAGAAGTGTTTTTGTGC 58.248 33.333 0.00 0.00 0.00 4.57
2925 3253 6.987404 GGGAGTAGCAGTTAGGATTAAAGAAG 59.013 42.308 0.00 0.00 0.00 2.85
2928 3257 6.463190 GGAGGGAGTAGCAGTTAGGATTAAAG 60.463 46.154 0.00 0.00 0.00 1.85
2929 3258 5.365895 GGAGGGAGTAGCAGTTAGGATTAAA 59.634 44.000 0.00 0.00 0.00 1.52
2932 3261 3.310193 GGAGGGAGTAGCAGTTAGGATT 58.690 50.000 0.00 0.00 0.00 3.01
2942 3271 1.262640 TTTGGGACGGAGGGAGTAGC 61.263 60.000 0.00 0.00 0.00 3.58
2944 3273 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2945 3274 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2946 3275 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2947 3276 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2948 3277 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2949 3278 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2950 3279 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2951 3280 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2952 3281 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
2953 3282 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
2954 3283 8.410912 ACAAAGTTAAGACACTTATTTTGGGAC 58.589 33.333 19.96 6.58 35.87 4.46
2955 3284 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
2956 3285 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
2991 3320 9.448438 TGTCTCAACTATAGCACAAATTTGTAT 57.552 29.630 22.87 15.37 39.91 2.29
2992 3321 8.717821 GTGTCTCAACTATAGCACAAATTTGTA 58.282 33.333 22.87 9.04 39.91 2.41
2993 3322 7.445402 AGTGTCTCAACTATAGCACAAATTTGT 59.555 33.333 18.13 18.13 43.36 2.83
2994 3323 7.810658 AGTGTCTCAACTATAGCACAAATTTG 58.189 34.615 16.67 16.67 0.00 2.32
2995 3324 7.986085 AGTGTCTCAACTATAGCACAAATTT 57.014 32.000 0.00 0.00 0.00 1.82
2996 3325 7.986085 AAGTGTCTCAACTATAGCACAAATT 57.014 32.000 0.00 0.00 0.00 1.82
2997 3326 9.672673 AATAAGTGTCTCAACTATAGCACAAAT 57.327 29.630 0.00 0.00 0.00 2.32
2998 3327 9.502091 AAATAAGTGTCTCAACTATAGCACAAA 57.498 29.630 0.00 0.00 0.00 2.83
2999 3328 9.502091 AAAATAAGTGTCTCAACTATAGCACAA 57.498 29.630 0.00 0.00 0.00 3.33
3000 3329 8.935844 CAAAATAAGTGTCTCAACTATAGCACA 58.064 33.333 0.00 0.00 0.00 4.57
3001 3330 8.391106 CCAAAATAAGTGTCTCAACTATAGCAC 58.609 37.037 0.00 0.00 0.00 4.40
3002 3331 7.552687 CCCAAAATAAGTGTCTCAACTATAGCA 59.447 37.037 0.00 0.00 0.00 3.49
3003 3332 7.769044 TCCCAAAATAAGTGTCTCAACTATAGC 59.231 37.037 0.00 0.00 0.00 2.97
3004 3333 9.099454 GTCCCAAAATAAGTGTCTCAACTATAG 57.901 37.037 0.00 0.00 0.00 1.31
3005 3334 8.598916 TGTCCCAAAATAAGTGTCTCAACTATA 58.401 33.333 0.00 0.00 0.00 1.31
3006 3335 7.458397 TGTCCCAAAATAAGTGTCTCAACTAT 58.542 34.615 0.00 0.00 0.00 2.12
3007 3336 6.833041 TGTCCCAAAATAAGTGTCTCAACTA 58.167 36.000 0.00 0.00 0.00 2.24
3008 3337 5.690865 TGTCCCAAAATAAGTGTCTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
3009 3338 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
3010 3339 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
3011 3340 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
3012 3341 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
3013 3342 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
3014 3343 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
3015 3344 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
3016 3345 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
3017 3346 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
3018 3347 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
3019 3348 5.098663 AGTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
3020 3349 4.695606 AGTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
3021 3350 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
3022 3351 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
3023 3352 2.715763 AGTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
3024 3353 2.111972 AGAAGTACTCCCTCTGTCCCAA 59.888 50.000 0.00 0.00 0.00 4.12
3025 3354 1.717077 AGAAGTACTCCCTCTGTCCCA 59.283 52.381 0.00 0.00 0.00 4.37
3026 3355 2.535836 AGAAGTACTCCCTCTGTCCC 57.464 55.000 0.00 0.00 0.00 4.46
3027 3356 3.196039 GGAAAGAAGTACTCCCTCTGTCC 59.804 52.174 14.06 14.06 0.00 4.02
3028 3357 4.090819 AGGAAAGAAGTACTCCCTCTGTC 58.909 47.826 0.00 0.00 0.00 3.51
3029 3358 4.090819 GAGGAAAGAAGTACTCCCTCTGT 58.909 47.826 15.25 3.98 37.71 3.41
3030 3359 3.449377 GGAGGAAAGAAGTACTCCCTCTG 59.551 52.174 18.90 0.00 42.87 3.35
3031 3360 3.715287 GGAGGAAAGAAGTACTCCCTCT 58.285 50.000 18.90 8.36 42.87 3.69
3036 3365 8.600449 CATTATGATGGAGGAAAGAAGTACTC 57.400 38.462 0.00 0.00 0.00 2.59
3057 3386 7.618019 AAGGAGCATACATAGAAGTCCATTA 57.382 36.000 0.00 0.00 0.00 1.90
3116 3448 4.768448 TGAAGAACATTCTGCATGGTGAAT 59.232 37.500 0.00 0.00 37.93 2.57
3149 3481 2.306805 AGGAAATGACTGCTCATCCACA 59.693 45.455 0.00 0.00 35.96 4.17
3200 3532 7.792374 TTCTGAATAAGAGTATGCACCATTC 57.208 36.000 0.00 0.00 35.91 2.67
3249 3581 4.036027 AGAGAAAACTCACTGCACAATGTG 59.964 41.667 9.36 9.36 36.51 3.21
3257 3589 3.623060 TGACACAAGAGAAAACTCACTGC 59.377 43.478 0.00 0.00 0.00 4.40
3287 3619 9.091220 AGGTAATAACTGAAGAGAAGTACAACT 57.909 33.333 0.00 0.00 0.00 3.16
3322 3654 7.331026 TGGAATACTCTCAGATTTTGGTACTG 58.669 38.462 0.00 0.00 0.00 2.74
3381 3713 9.638239 TGCAATCTTATGTGGAAACTATTTTTC 57.362 29.630 0.00 0.00 0.00 2.29
3468 3801 2.388735 TCTACTCTGGACCGCATCAAT 58.611 47.619 0.00 0.00 0.00 2.57
3475 3808 4.822350 TGAAGTGATATCTACTCTGGACCG 59.178 45.833 3.98 0.00 0.00 4.79
3498 3831 4.449131 CATGGAATGTCAGACAGCATAGT 58.551 43.478 9.64 0.00 40.20 2.12
3519 3852 9.202273 GCAAATTGTTGATAAACCATCTTAACA 57.798 29.630 0.00 0.00 36.83 2.41
3670 4003 5.389516 GCATCAGTAAAACTTGTAGGTCACG 60.390 44.000 0.00 0.00 0.00 4.35
3674 4007 6.952773 TTTGCATCAGTAAAACTTGTAGGT 57.047 33.333 0.00 0.00 0.00 3.08
3685 4018 8.621532 AGAACAACTCTATTTTGCATCAGTAA 57.378 30.769 0.00 0.00 30.22 2.24
3815 4171 0.467290 TCCAACACCCCTGAAGCAAC 60.467 55.000 0.00 0.00 0.00 4.17
3928 4284 7.367285 TGGTGCAAGTTTAGAATTTGTGTATC 58.633 34.615 0.00 0.00 0.00 2.24
4218 4622 9.780186 ATGGTAAAGAGTGAATAGGCTATTAAC 57.220 33.333 22.34 22.34 30.89 2.01
4310 4714 7.341769 CCAAGGGTTATCACATCTTATTTTCCA 59.658 37.037 0.00 0.00 0.00 3.53
4478 4882 2.093128 CCAGTCGCCCTACCAGTTTATT 60.093 50.000 0.00 0.00 0.00 1.40
4481 4885 1.125711 ACCAGTCGCCCTACCAGTTT 61.126 55.000 0.00 0.00 0.00 2.66
4506 4910 8.211116 AGAAAGATCTGAATATGCAGAAACTG 57.789 34.615 17.59 0.00 46.94 3.16
4544 4948 2.660572 TCCCTGCAAGCAAAGTGTTTA 58.339 42.857 0.00 0.00 0.00 2.01
4548 4952 1.321474 TCTTCCCTGCAAGCAAAGTG 58.679 50.000 0.00 0.00 0.00 3.16
4549 4953 2.071778 TTCTTCCCTGCAAGCAAAGT 57.928 45.000 0.00 0.00 0.00 2.66
4550 4954 2.101249 TGTTTCTTCCCTGCAAGCAAAG 59.899 45.455 0.00 0.00 0.00 2.77
4551 4955 2.106566 TGTTTCTTCCCTGCAAGCAAA 58.893 42.857 0.00 0.00 0.00 3.68
4552 4956 1.774110 TGTTTCTTCCCTGCAAGCAA 58.226 45.000 0.00 0.00 0.00 3.91
4780 5201 2.789409 ACCACTTATCCTGGTTGCTC 57.211 50.000 0.00 0.00 39.07 4.26
4846 5267 5.359576 TGGGTTGTAGATATTTGTCAATGGC 59.640 40.000 0.00 0.00 0.00 4.40
5056 5477 0.326618 ACTGCTACCCTGGTAGGCAT 60.327 55.000 21.71 9.63 45.87 4.40
5081 5503 7.066887 TGTCGTGGCATATAGATGTGAAATTTT 59.933 33.333 0.00 0.00 35.30 1.82
5083 5505 6.017934 GTGTCGTGGCATATAGATGTGAAATT 60.018 38.462 0.00 0.00 35.30 1.82
5084 5506 5.466728 GTGTCGTGGCATATAGATGTGAAAT 59.533 40.000 0.00 0.00 35.30 2.17
5088 5510 3.716601 TGTGTCGTGGCATATAGATGTG 58.283 45.455 0.00 0.00 35.30 3.21
5100 5522 1.062002 GTTGTGTGACTTGTGTCGTGG 59.938 52.381 0.00 0.00 45.70 4.94
5104 5526 4.355543 AATGTGTTGTGTGACTTGTGTC 57.644 40.909 0.00 0.00 43.20 3.67
5111 5533 8.289618 ACTTCATGTTATAATGTGTTGTGTGAC 58.710 33.333 0.00 0.00 0.00 3.67
5112 5534 8.389779 ACTTCATGTTATAATGTGTTGTGTGA 57.610 30.769 0.00 0.00 0.00 3.58
5120 5564 8.716646 TGACCACTACTTCATGTTATAATGTG 57.283 34.615 0.00 0.00 0.00 3.21
5124 5568 7.857456 ACCATGACCACTACTTCATGTTATAA 58.143 34.615 9.96 0.00 45.21 0.98
5131 5575 4.908601 TGAACCATGACCACTACTTCAT 57.091 40.909 0.00 0.00 32.44 2.57
5141 5585 7.227512 CCTAGTTTTAGATGATGAACCATGACC 59.772 40.741 0.00 0.00 0.00 4.02
5142 5586 7.227512 CCCTAGTTTTAGATGATGAACCATGAC 59.772 40.741 0.00 0.00 0.00 3.06
5144 5588 6.016777 GCCCTAGTTTTAGATGATGAACCATG 60.017 42.308 0.00 0.00 0.00 3.66
5151 5595 6.712095 TGCTATTGCCCTAGTTTTAGATGATG 59.288 38.462 0.00 0.00 38.71 3.07
5178 5622 9.539825 TTAACTGTACGTTTATGGACTTACAAA 57.460 29.630 0.00 0.00 34.95 2.83
5180 5624 7.329226 GCTTAACTGTACGTTTATGGACTTACA 59.671 37.037 0.00 0.00 37.05 2.41
5181 5625 7.329226 TGCTTAACTGTACGTTTATGGACTTAC 59.671 37.037 0.00 0.00 37.05 2.34
5182 5626 7.377398 TGCTTAACTGTACGTTTATGGACTTA 58.623 34.615 0.00 0.00 37.05 2.24
5183 5627 6.225318 TGCTTAACTGTACGTTTATGGACTT 58.775 36.000 0.00 0.00 37.05 3.01
5185 5629 6.534079 AGATGCTTAACTGTACGTTTATGGAC 59.466 38.462 0.00 0.00 37.05 4.02
5187 5631 6.533723 TGAGATGCTTAACTGTACGTTTATGG 59.466 38.462 0.00 0.00 37.05 2.74
5188 5632 7.062956 TGTGAGATGCTTAACTGTACGTTTATG 59.937 37.037 0.00 2.78 37.05 1.90
5189 5633 7.094631 TGTGAGATGCTTAACTGTACGTTTAT 58.905 34.615 0.00 1.09 37.05 1.40
5190 5634 6.448852 TGTGAGATGCTTAACTGTACGTTTA 58.551 36.000 0.00 0.00 37.05 2.01
5197 5641 5.051891 GCATTTGTGAGATGCTTAACTGT 57.948 39.130 2.07 0.00 44.92 3.55
5206 5650 5.500645 ACTCATGATGCATTTGTGAGATG 57.499 39.130 28.57 14.02 38.81 2.90
5250 5925 1.078759 CGGCGCTCGACTCAAAAGAT 61.079 55.000 7.64 0.00 42.43 2.40
5251 5926 1.733041 CGGCGCTCGACTCAAAAGA 60.733 57.895 7.64 0.00 42.43 2.52
5261 5936 0.659417 ATGTACGTTATCGGCGCTCG 60.659 55.000 7.64 9.90 41.85 5.03
5262 5937 0.776451 CATGTACGTTATCGGCGCTC 59.224 55.000 7.64 0.00 41.85 5.03
5264 5939 0.776451 CTCATGTACGTTATCGGCGC 59.224 55.000 0.00 0.00 41.85 6.53
5268 5943 8.814235 ACTAAAATTTCCTCATGTACGTTATCG 58.186 33.333 0.00 0.00 43.34 2.92
5278 6031 7.442062 AGCAACCAAAACTAAAATTTCCTCATG 59.558 33.333 0.00 0.00 0.00 3.07
5283 6036 7.186128 CACAAGCAACCAAAACTAAAATTTCC 58.814 34.615 0.00 0.00 0.00 3.13
5284 6037 7.148323 ACCACAAGCAACCAAAACTAAAATTTC 60.148 33.333 0.00 0.00 0.00 2.17
5307 6060 9.602568 TTTGATAACTTATAAAGCGATACACCA 57.397 29.630 0.00 0.00 0.00 4.17
5343 6155 8.078060 TCAGAATTCATAAGATCACACACCTA 57.922 34.615 8.44 0.00 0.00 3.08
5426 6344 2.158842 AGCAACATGATGGAGAGGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
5462 6380 4.702131 AGCCGCTCTTCAAAACAATAAGAT 59.298 37.500 0.00 0.00 0.00 2.40
5495 6413 1.355066 CCTTCGCGAGCTTCTCAACC 61.355 60.000 9.59 0.00 0.00 3.77
5591 6509 2.111878 GTGCGGCCATATCCAGCT 59.888 61.111 2.24 0.00 0.00 4.24
5648 6566 9.762381 GAATGGTATTTACCCCCATTATGAATA 57.238 33.333 4.35 0.00 46.32 1.75
5711 6631 0.893270 TTCATTGCCCAGAACGGTGG 60.893 55.000 0.00 0.00 37.34 4.61
5742 6662 6.070596 TCACAGAACATCCTGAATCAGTACAT 60.071 38.462 9.63 0.00 37.59 2.29
5809 6729 4.720046 TGCAAACAGGATACAGTTACCAA 58.280 39.130 0.00 0.00 46.67 3.67
5844 6764 9.325198 AGTTATTTGGGTGAATTTTCTTGAAAC 57.675 29.630 0.00 0.00 0.00 2.78
5857 6777 1.707989 TCCAGGCAGTTATTTGGGTGA 59.292 47.619 0.00 0.00 0.00 4.02
5900 6825 5.398809 CCAAGGATCCTCCATCTGAAATTCT 60.399 44.000 16.52 0.00 39.61 2.40
6000 6925 1.064296 CGTGCCCGTCTAGCAGTAG 59.936 63.158 0.00 0.00 41.87 2.57
6124 7049 0.830648 CCCGGTCCTGCTGAAATCTA 59.169 55.000 0.00 0.00 0.00 1.98
6125 7050 1.604378 CCCGGTCCTGCTGAAATCT 59.396 57.895 0.00 0.00 0.00 2.40
6179 7104 2.355481 CCTATTCCGCGCCGTACC 60.355 66.667 0.00 0.00 0.00 3.34
6183 7108 4.664677 CCCTCCTATTCCGCGCCG 62.665 72.222 0.00 0.00 0.00 6.46
6191 7116 2.355986 TGCGCGTCACCCTCCTATT 61.356 57.895 8.43 0.00 0.00 1.73
6253 7180 7.614124 AATGCATGAATTAACAAATTGGGAC 57.386 32.000 0.00 0.00 0.00 4.46
6324 9688 4.464008 TCTATACGGACCGACATACCTTT 58.536 43.478 23.38 0.00 0.00 3.11
6327 9691 3.755378 ACATCTATACGGACCGACATACC 59.245 47.826 23.38 0.00 0.00 2.73
6328 9692 5.368256 AACATCTATACGGACCGACATAC 57.632 43.478 23.38 0.00 0.00 2.39
6335 9701 4.142004 ACAGGACAAACATCTATACGGACC 60.142 45.833 0.00 0.00 0.00 4.46
6393 9761 5.163784 TGCACATTTTTCAAACACACAATGG 60.164 36.000 0.00 0.00 0.00 3.16
6397 9765 3.681897 GGTGCACATTTTTCAAACACACA 59.318 39.130 20.43 0.00 0.00 3.72
6468 9836 5.451023 GTGTGGTATGCGACGAATATTTTTG 59.549 40.000 0.00 0.00 0.00 2.44
6479 9847 2.466867 CCAAGGTGTGGTATGCGAC 58.533 57.895 0.00 0.00 43.20 5.19
6529 9897 5.858381 TGTTACTCTTGAGAATTCTGCAGT 58.142 37.500 14.00 10.87 0.00 4.40
6535 9903 7.442666 ACTTGGACTTGTTACTCTTGAGAATTC 59.557 37.037 4.49 0.00 0.00 2.17
6539 9907 5.871396 ACTTGGACTTGTTACTCTTGAGA 57.129 39.130 4.49 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.