Multiple sequence alignment - TraesCS1D01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G258800 chr1D 100.000 4329 0 0 1 4329 351244582 351248910 0.000000e+00 7995.0
1 TraesCS1D01G258800 chr1D 87.801 664 78 1 2653 3313 405111105 405110442 0.000000e+00 774.0
2 TraesCS1D01G258800 chr1B 92.895 2097 87 29 458 2510 473821759 473823837 0.000000e+00 2990.0
3 TraesCS1D01G258800 chr1B 96.405 1196 37 4 2549 3740 473823998 473825191 0.000000e+00 1965.0
4 TraesCS1D01G258800 chr1B 88.571 665 71 3 2653 3313 544997391 544996728 0.000000e+00 802.0
5 TraesCS1D01G258800 chr1B 100.000 41 0 0 2507 2547 473823939 473823979 4.640000e-10 76.8
6 TraesCS1D01G258800 chr1A 93.228 1772 83 16 1829 3569 452019372 452021137 0.000000e+00 2573.0
7 TraesCS1D01G258800 chr1A 91.149 1593 76 28 230 1794 452017815 452019370 0.000000e+00 2100.0
8 TraesCS1D01G258800 chr1A 88.102 664 76 1 2653 3313 500563591 500562928 0.000000e+00 785.0
9 TraesCS1D01G258800 chr1A 88.226 603 32 8 3755 4329 452028595 452029186 0.000000e+00 684.0
10 TraesCS1D01G258800 chr2A 85.160 1031 93 30 1206 2199 689380729 689381736 0.000000e+00 1002.0
11 TraesCS1D01G258800 chr6B 92.321 586 41 2 1206 1791 270875132 270875713 0.000000e+00 830.0
12 TraesCS1D01G258800 chr6B 78.759 419 32 31 1817 2199 270875787 270876184 1.210000e-55 228.0
13 TraesCS1D01G258800 chr3A 88.351 661 73 4 2645 3304 578874851 578875508 0.000000e+00 791.0
14 TraesCS1D01G258800 chr3D 87.706 667 78 4 2645 3310 438943405 438944068 0.000000e+00 774.0
15 TraesCS1D01G258800 chr3B 87.706 667 78 4 2645 3310 575257461 575258124 0.000000e+00 774.0
16 TraesCS1D01G258800 chr5A 89.274 634 41 10 1189 1822 623555802 623555196 0.000000e+00 769.0
17 TraesCS1D01G258800 chr5A 87.368 665 78 4 2652 3313 691670172 691669511 0.000000e+00 758.0
18 TraesCS1D01G258800 chr5A 91.190 420 35 2 993 1412 691671086 691670669 1.750000e-158 569.0
19 TraesCS1D01G258800 chr5A 91.667 408 32 2 991 1397 605152984 605153390 8.130000e-157 564.0
20 TraesCS1D01G258800 chr5A 91.398 279 24 0 1485 1763 691670551 691670273 2.440000e-102 383.0
21 TraesCS1D01G258800 chr5B 89.848 591 47 5 1211 1801 127703138 127702561 0.000000e+00 747.0
22 TraesCS1D01G258800 chr5B 91.872 406 30 3 993 1397 594873409 594873812 8.130000e-157 564.0
23 TraesCS1D01G258800 chr5B 84.772 394 38 17 1817 2199 127702507 127702125 4.090000e-100 375.0
24 TraesCS1D01G258800 chrUn 93.627 408 25 1 989 1396 126673955 126674361 3.700000e-170 608.0
25 TraesCS1D01G258800 chrUn 91.367 278 24 0 1485 1762 126674496 126674773 8.780000e-102 381.0
26 TraesCS1D01G258800 chr4B 93.467 398 26 0 999 1396 654037734 654037337 3.730000e-165 592.0
27 TraesCS1D01G258800 chr4B 91.459 281 24 0 1485 1765 654037207 654036927 1.890000e-103 387.0
28 TraesCS1D01G258800 chr7A 92.231 399 29 2 1001 1398 663529035 663529432 8.130000e-157 564.0
29 TraesCS1D01G258800 chr6A 92.424 396 28 2 1003 1397 115944849 115945243 8.130000e-157 564.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G258800 chr1D 351244582 351248910 4328 False 7995.000000 7995 100.000000 1 4329 1 chr1D.!!$F1 4328
1 TraesCS1D01G258800 chr1D 405110442 405111105 663 True 774.000000 774 87.801000 2653 3313 1 chr1D.!!$R1 660
2 TraesCS1D01G258800 chr1B 473821759 473825191 3432 False 1677.266667 2990 96.433333 458 3740 3 chr1B.!!$F1 3282
3 TraesCS1D01G258800 chr1B 544996728 544997391 663 True 802.000000 802 88.571000 2653 3313 1 chr1B.!!$R1 660
4 TraesCS1D01G258800 chr1A 452017815 452021137 3322 False 2336.500000 2573 92.188500 230 3569 2 chr1A.!!$F2 3339
5 TraesCS1D01G258800 chr1A 500562928 500563591 663 True 785.000000 785 88.102000 2653 3313 1 chr1A.!!$R1 660
6 TraesCS1D01G258800 chr1A 452028595 452029186 591 False 684.000000 684 88.226000 3755 4329 1 chr1A.!!$F1 574
7 TraesCS1D01G258800 chr2A 689380729 689381736 1007 False 1002.000000 1002 85.160000 1206 2199 1 chr2A.!!$F1 993
8 TraesCS1D01G258800 chr6B 270875132 270876184 1052 False 529.000000 830 85.540000 1206 2199 2 chr6B.!!$F1 993
9 TraesCS1D01G258800 chr3A 578874851 578875508 657 False 791.000000 791 88.351000 2645 3304 1 chr3A.!!$F1 659
10 TraesCS1D01G258800 chr3D 438943405 438944068 663 False 774.000000 774 87.706000 2645 3310 1 chr3D.!!$F1 665
11 TraesCS1D01G258800 chr3B 575257461 575258124 663 False 774.000000 774 87.706000 2645 3310 1 chr3B.!!$F1 665
12 TraesCS1D01G258800 chr5A 623555196 623555802 606 True 769.000000 769 89.274000 1189 1822 1 chr5A.!!$R1 633
13 TraesCS1D01G258800 chr5A 691669511 691671086 1575 True 570.000000 758 89.985333 993 3313 3 chr5A.!!$R2 2320
14 TraesCS1D01G258800 chr5B 127702125 127703138 1013 True 561.000000 747 87.310000 1211 2199 2 chr5B.!!$R1 988
15 TraesCS1D01G258800 chrUn 126673955 126674773 818 False 494.500000 608 92.497000 989 1762 2 chrUn.!!$F1 773
16 TraesCS1D01G258800 chr4B 654036927 654037734 807 True 489.500000 592 92.463000 999 1765 2 chr4B.!!$R1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.031994 TCGGGCTTTTGCTTCTTTGC 59.968 50.0 0.00 0.0 46.54 3.68 F
205 206 0.038159 AACCGAGCAACTCTCTTCCG 60.038 55.0 0.00 0.0 39.70 4.30 F
854 880 0.107459 GAATCCTCGCTTTGCTCCCT 60.107 55.0 0.00 0.0 0.00 4.20 F
2146 2366 0.108520 CCAACTGGTTGATGCCATGC 60.109 55.0 14.17 0.0 42.93 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 1916 1.852895 CGCAAGTACGAGCAGGTAATC 59.147 52.381 12.06 0.0 34.06 1.75 R
1859 2048 1.859080 ACTGACAACGAGTTTCTTCGC 59.141 47.619 0.00 0.0 44.15 4.70 R
2621 2965 1.329906 GCCAAGATTCACAGATCAGCG 59.670 52.381 0.00 0.0 0.00 5.18 R
4088 4438 0.038343 GCACGTGTAACCCGAACCTA 60.038 55.000 18.38 0.0 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.377346 CCATCGATGGGAGTACTTCTG 57.623 52.381 32.99 6.05 44.31 3.02
23 24 2.546795 CCATCGATGGGAGTACTTCTGC 60.547 54.545 32.99 0.00 44.31 4.26
24 25 0.738975 TCGATGGGAGTACTTCTGCG 59.261 55.000 0.01 3.08 35.27 5.18
25 26 0.738975 CGATGGGAGTACTTCTGCGA 59.261 55.000 0.01 0.00 35.27 5.10
26 27 1.338337 CGATGGGAGTACTTCTGCGAT 59.662 52.381 0.01 0.00 35.90 4.58
27 28 2.748605 GATGGGAGTACTTCTGCGATG 58.251 52.381 0.01 0.00 33.72 3.84
28 29 1.847328 TGGGAGTACTTCTGCGATGA 58.153 50.000 0.01 0.00 35.27 2.92
29 30 2.388735 TGGGAGTACTTCTGCGATGAT 58.611 47.619 0.01 0.00 35.27 2.45
30 31 2.101415 TGGGAGTACTTCTGCGATGATG 59.899 50.000 0.01 0.00 35.27 3.07
31 32 2.131183 GGAGTACTTCTGCGATGATGC 58.869 52.381 0.00 0.00 0.00 3.91
32 33 2.481969 GGAGTACTTCTGCGATGATGCA 60.482 50.000 0.00 0.00 43.95 3.96
41 42 3.678915 TGCGATGATGCAGTTAATGTG 57.321 42.857 0.00 0.00 40.62 3.21
42 43 3.009026 TGCGATGATGCAGTTAATGTGT 58.991 40.909 0.00 0.00 40.62 3.72
43 44 3.063861 TGCGATGATGCAGTTAATGTGTC 59.936 43.478 0.00 0.00 40.62 3.67
44 45 3.546815 GCGATGATGCAGTTAATGTGTCC 60.547 47.826 0.00 0.00 34.15 4.02
45 46 3.622612 CGATGATGCAGTTAATGTGTCCA 59.377 43.478 0.00 0.00 0.00 4.02
46 47 4.274214 CGATGATGCAGTTAATGTGTCCAT 59.726 41.667 0.00 0.00 0.00 3.41
47 48 4.968812 TGATGCAGTTAATGTGTCCATG 57.031 40.909 0.00 0.00 0.00 3.66
48 49 4.587891 TGATGCAGTTAATGTGTCCATGA 58.412 39.130 0.00 0.00 0.00 3.07
49 50 5.195185 TGATGCAGTTAATGTGTCCATGAT 58.805 37.500 0.00 0.00 0.00 2.45
50 51 5.653330 TGATGCAGTTAATGTGTCCATGATT 59.347 36.000 0.00 0.00 0.00 2.57
51 52 5.981088 TGCAGTTAATGTGTCCATGATTT 57.019 34.783 0.00 0.00 0.00 2.17
52 53 5.712004 TGCAGTTAATGTGTCCATGATTTG 58.288 37.500 0.00 0.00 0.00 2.32
53 54 4.563976 GCAGTTAATGTGTCCATGATTTGC 59.436 41.667 0.00 0.00 0.00 3.68
54 55 5.104374 CAGTTAATGTGTCCATGATTTGCC 58.896 41.667 0.00 0.00 0.00 4.52
55 56 2.945447 AATGTGTCCATGATTTGCCG 57.055 45.000 0.00 0.00 0.00 5.69
56 57 2.127271 ATGTGTCCATGATTTGCCGA 57.873 45.000 0.00 0.00 0.00 5.54
57 58 2.127271 TGTGTCCATGATTTGCCGAT 57.873 45.000 0.00 0.00 0.00 4.18
58 59 2.445427 TGTGTCCATGATTTGCCGATT 58.555 42.857 0.00 0.00 0.00 3.34
59 60 3.615155 TGTGTCCATGATTTGCCGATTA 58.385 40.909 0.00 0.00 0.00 1.75
60 61 4.013050 TGTGTCCATGATTTGCCGATTAA 58.987 39.130 0.00 0.00 0.00 1.40
61 62 4.142491 TGTGTCCATGATTTGCCGATTAAC 60.142 41.667 0.00 0.00 0.00 2.01
62 63 3.064682 TGTCCATGATTTGCCGATTAACG 59.935 43.478 0.00 0.00 42.18 3.18
63 64 2.032799 TCCATGATTTGCCGATTAACGC 59.967 45.455 0.00 0.00 41.07 4.84
64 65 2.036217 CATGATTTGCCGATTAACGCG 58.964 47.619 3.53 3.53 41.07 6.01
65 66 1.080298 TGATTTGCCGATTAACGCGT 58.920 45.000 5.58 5.58 41.07 6.01
66 67 1.061421 TGATTTGCCGATTAACGCGTC 59.939 47.619 14.44 0.00 41.07 5.19
67 68 1.061421 GATTTGCCGATTAACGCGTCA 59.939 47.619 14.44 1.97 41.07 4.35
68 69 0.440758 TTTGCCGATTAACGCGTCAG 59.559 50.000 14.44 2.04 41.07 3.51
69 70 0.388778 TTGCCGATTAACGCGTCAGA 60.389 50.000 14.44 1.10 41.07 3.27
70 71 0.800683 TGCCGATTAACGCGTCAGAG 60.801 55.000 14.44 3.26 41.07 3.35
71 72 1.480219 GCCGATTAACGCGTCAGAGG 61.480 60.000 14.44 14.06 41.07 3.69
72 73 1.480219 CCGATTAACGCGTCAGAGGC 61.480 60.000 14.44 4.93 41.07 4.70
88 89 3.127533 GCGTTGGCCGATCTGCTT 61.128 61.111 9.11 0.00 39.56 3.91
89 90 2.690778 GCGTTGGCCGATCTGCTTT 61.691 57.895 9.11 0.00 39.56 3.51
90 91 1.875963 CGTTGGCCGATCTGCTTTT 59.124 52.632 9.11 0.00 39.56 2.27
91 92 0.454957 CGTTGGCCGATCTGCTTTTG 60.455 55.000 9.11 0.00 39.56 2.44
92 93 0.598065 GTTGGCCGATCTGCTTTTGT 59.402 50.000 9.11 0.00 0.00 2.83
93 94 1.000274 GTTGGCCGATCTGCTTTTGTT 60.000 47.619 9.11 0.00 0.00 2.83
94 95 1.327303 TGGCCGATCTGCTTTTGTTT 58.673 45.000 9.11 0.00 0.00 2.83
95 96 1.686052 TGGCCGATCTGCTTTTGTTTT 59.314 42.857 9.11 0.00 0.00 2.43
96 97 2.288152 TGGCCGATCTGCTTTTGTTTTC 60.288 45.455 9.11 0.00 0.00 2.29
97 98 2.288152 GGCCGATCTGCTTTTGTTTTCA 60.288 45.455 9.11 0.00 0.00 2.69
98 99 3.578688 GCCGATCTGCTTTTGTTTTCAT 58.421 40.909 1.31 0.00 0.00 2.57
99 100 3.365820 GCCGATCTGCTTTTGTTTTCATG 59.634 43.478 1.31 0.00 0.00 3.07
100 101 4.797471 CCGATCTGCTTTTGTTTTCATGA 58.203 39.130 0.00 0.00 0.00 3.07
101 102 5.221880 CCGATCTGCTTTTGTTTTCATGAA 58.778 37.500 3.38 3.38 0.00 2.57
102 103 5.344128 CCGATCTGCTTTTGTTTTCATGAAG 59.656 40.000 8.41 0.00 0.00 3.02
103 104 6.144854 CGATCTGCTTTTGTTTTCATGAAGA 58.855 36.000 8.41 0.65 0.00 2.87
104 105 6.304922 CGATCTGCTTTTGTTTTCATGAAGAG 59.695 38.462 8.41 3.13 0.00 2.85
105 106 6.455360 TCTGCTTTTGTTTTCATGAAGAGT 57.545 33.333 8.41 0.00 0.00 3.24
106 107 7.566760 TCTGCTTTTGTTTTCATGAAGAGTA 57.433 32.000 8.41 0.00 0.00 2.59
107 108 7.642669 TCTGCTTTTGTTTTCATGAAGAGTAG 58.357 34.615 8.41 9.53 0.00 2.57
108 109 6.208644 TGCTTTTGTTTTCATGAAGAGTAGC 58.791 36.000 8.41 13.37 0.00 3.58
109 110 6.183360 TGCTTTTGTTTTCATGAAGAGTAGCA 60.183 34.615 19.22 19.22 0.00 3.49
110 111 6.142958 GCTTTTGTTTTCATGAAGAGTAGCAC 59.857 38.462 8.41 0.00 0.00 4.40
111 112 4.990543 TGTTTTCATGAAGAGTAGCACG 57.009 40.909 8.41 0.00 0.00 5.34
112 113 3.186409 TGTTTTCATGAAGAGTAGCACGC 59.814 43.478 8.41 0.00 0.00 5.34
113 114 2.741759 TTCATGAAGAGTAGCACGCA 57.258 45.000 3.38 0.00 0.00 5.24
114 115 2.967599 TCATGAAGAGTAGCACGCAT 57.032 45.000 0.00 0.00 0.00 4.73
115 116 2.543641 TCATGAAGAGTAGCACGCATG 58.456 47.619 0.00 0.00 35.63 4.06
133 134 2.978010 CCGTGTCGGGCTTTTGCT 60.978 61.111 0.00 0.00 44.15 3.91
134 135 2.551912 CCGTGTCGGGCTTTTGCTT 61.552 57.895 0.00 0.00 44.15 3.91
135 136 1.082104 CGTGTCGGGCTTTTGCTTC 60.082 57.895 0.00 0.00 46.54 3.86
136 137 1.507141 CGTGTCGGGCTTTTGCTTCT 61.507 55.000 0.00 0.00 46.54 2.85
137 138 0.668535 GTGTCGGGCTTTTGCTTCTT 59.331 50.000 0.00 0.00 46.54 2.52
138 139 1.067060 GTGTCGGGCTTTTGCTTCTTT 59.933 47.619 0.00 0.00 46.54 2.52
139 140 1.066908 TGTCGGGCTTTTGCTTCTTTG 59.933 47.619 0.00 0.00 46.54 2.77
140 141 0.031994 TCGGGCTTTTGCTTCTTTGC 59.968 50.000 0.00 0.00 46.54 3.68
141 142 0.945743 CGGGCTTTTGCTTCTTTGCC 60.946 55.000 0.00 0.00 46.54 4.52
142 143 0.394192 GGGCTTTTGCTTCTTTGCCT 59.606 50.000 0.00 0.00 46.54 4.75
143 144 1.606480 GGGCTTTTGCTTCTTTGCCTC 60.606 52.381 0.00 0.00 46.54 4.70
144 145 1.342496 GGCTTTTGCTTCTTTGCCTCT 59.658 47.619 0.00 0.00 46.54 3.69
145 146 2.608998 GGCTTTTGCTTCTTTGCCTCTC 60.609 50.000 0.00 0.00 46.54 3.20
146 147 2.035066 GCTTTTGCTTCTTTGCCTCTCA 59.965 45.455 0.00 0.00 43.35 3.27
147 148 3.305881 GCTTTTGCTTCTTTGCCTCTCAT 60.306 43.478 0.00 0.00 43.35 2.90
148 149 4.082571 GCTTTTGCTTCTTTGCCTCTCATA 60.083 41.667 0.00 0.00 43.35 2.15
149 150 5.565439 GCTTTTGCTTCTTTGCCTCTCATAA 60.565 40.000 0.00 0.00 43.35 1.90
150 151 6.403866 TTTTGCTTCTTTGCCTCTCATAAA 57.596 33.333 0.00 0.00 0.00 1.40
151 152 6.403866 TTTGCTTCTTTGCCTCTCATAAAA 57.596 33.333 0.00 0.00 0.00 1.52
152 153 6.403866 TTGCTTCTTTGCCTCTCATAAAAA 57.596 33.333 0.00 0.00 0.00 1.94
181 182 9.875660 GTATAATATTTTCGTTTGTTTTTCGCC 57.124 29.630 0.00 0.00 0.00 5.54
182 183 6.830114 AATATTTTCGTTTGTTTTTCGCCA 57.170 29.167 0.00 0.00 0.00 5.69
183 184 7.414814 AATATTTTCGTTTGTTTTTCGCCAT 57.585 28.000 0.00 0.00 0.00 4.40
184 185 5.726729 ATTTTCGTTTGTTTTTCGCCATT 57.273 30.435 0.00 0.00 0.00 3.16
185 186 5.532025 TTTTCGTTTGTTTTTCGCCATTT 57.468 30.435 0.00 0.00 0.00 2.32
186 187 6.642683 TTTTCGTTTGTTTTTCGCCATTTA 57.357 29.167 0.00 0.00 0.00 1.40
187 188 6.642683 TTTCGTTTGTTTTTCGCCATTTAA 57.357 29.167 0.00 0.00 0.00 1.52
188 189 5.623174 TCGTTTGTTTTTCGCCATTTAAC 57.377 34.783 0.00 0.00 0.00 2.01
189 190 4.503370 TCGTTTGTTTTTCGCCATTTAACC 59.497 37.500 0.00 0.00 0.00 2.85
190 191 4.604261 CGTTTGTTTTTCGCCATTTAACCG 60.604 41.667 0.00 0.00 0.00 4.44
191 192 3.984508 TGTTTTTCGCCATTTAACCGA 57.015 38.095 0.00 0.00 0.00 4.69
192 193 3.891324 TGTTTTTCGCCATTTAACCGAG 58.109 40.909 0.00 0.00 32.14 4.63
193 194 2.622546 TTTTCGCCATTTAACCGAGC 57.377 45.000 0.00 0.00 32.14 5.03
194 195 1.524848 TTTCGCCATTTAACCGAGCA 58.475 45.000 0.00 0.00 32.14 4.26
195 196 1.524848 TTCGCCATTTAACCGAGCAA 58.475 45.000 0.00 0.00 32.14 3.91
196 197 0.800012 TCGCCATTTAACCGAGCAAC 59.200 50.000 0.00 0.00 0.00 4.17
197 198 0.802494 CGCCATTTAACCGAGCAACT 59.198 50.000 0.00 0.00 0.00 3.16
198 199 1.202031 CGCCATTTAACCGAGCAACTC 60.202 52.381 0.00 0.00 0.00 3.01
199 200 2.084546 GCCATTTAACCGAGCAACTCT 58.915 47.619 0.00 0.00 0.00 3.24
200 201 2.096013 GCCATTTAACCGAGCAACTCTC 59.904 50.000 0.00 0.00 38.47 3.20
201 202 3.600388 CCATTTAACCGAGCAACTCTCT 58.400 45.455 0.00 0.00 39.70 3.10
202 203 4.003648 CCATTTAACCGAGCAACTCTCTT 58.996 43.478 0.00 0.00 39.70 2.85
203 204 4.093556 CCATTTAACCGAGCAACTCTCTTC 59.906 45.833 0.00 0.00 39.70 2.87
204 205 3.314541 TTAACCGAGCAACTCTCTTCC 57.685 47.619 0.00 0.00 39.70 3.46
205 206 0.038159 AACCGAGCAACTCTCTTCCG 60.038 55.000 0.00 0.00 39.70 4.30
206 207 1.807573 CCGAGCAACTCTCTTCCGC 60.808 63.158 0.00 0.00 39.70 5.54
207 208 1.214062 CGAGCAACTCTCTTCCGCT 59.786 57.895 0.00 0.00 39.70 5.52
208 209 0.389166 CGAGCAACTCTCTTCCGCTT 60.389 55.000 0.00 0.00 39.70 4.68
209 210 1.135373 CGAGCAACTCTCTTCCGCTTA 60.135 52.381 0.00 0.00 39.70 3.09
210 211 2.263945 GAGCAACTCTCTTCCGCTTAC 58.736 52.381 0.00 0.00 38.78 2.34
211 212 1.618837 AGCAACTCTCTTCCGCTTACA 59.381 47.619 0.00 0.00 0.00 2.41
212 213 2.037251 AGCAACTCTCTTCCGCTTACAA 59.963 45.455 0.00 0.00 0.00 2.41
213 214 2.806244 GCAACTCTCTTCCGCTTACAAA 59.194 45.455 0.00 0.00 0.00 2.83
214 215 3.250040 GCAACTCTCTTCCGCTTACAAAA 59.750 43.478 0.00 0.00 0.00 2.44
215 216 4.611581 GCAACTCTCTTCCGCTTACAAAAG 60.612 45.833 0.00 0.00 35.68 2.27
216 217 4.338379 ACTCTCTTCCGCTTACAAAAGT 57.662 40.909 0.00 0.00 34.99 2.66
217 218 4.704965 ACTCTCTTCCGCTTACAAAAGTT 58.295 39.130 0.00 0.00 34.99 2.66
218 219 5.850614 ACTCTCTTCCGCTTACAAAAGTTA 58.149 37.500 0.00 0.00 34.99 2.24
219 220 6.285990 ACTCTCTTCCGCTTACAAAAGTTAA 58.714 36.000 0.00 0.00 34.99 2.01
220 221 6.764560 ACTCTCTTCCGCTTACAAAAGTTAAA 59.235 34.615 0.00 0.00 34.99 1.52
221 222 7.041984 ACTCTCTTCCGCTTACAAAAGTTAAAG 60.042 37.037 0.00 0.00 34.99 1.85
222 223 6.987992 TCTCTTCCGCTTACAAAAGTTAAAGA 59.012 34.615 0.00 0.00 34.99 2.52
223 224 7.660208 TCTCTTCCGCTTACAAAAGTTAAAGAT 59.340 33.333 0.00 0.00 34.99 2.40
224 225 8.836268 TCTTCCGCTTACAAAAGTTAAAGATA 57.164 30.769 0.00 0.00 34.99 1.98
225 226 9.444600 TCTTCCGCTTACAAAAGTTAAAGATAT 57.555 29.630 0.00 0.00 34.99 1.63
226 227 9.704098 CTTCCGCTTACAAAAGTTAAAGATATC 57.296 33.333 0.00 0.00 34.99 1.63
227 228 9.444600 TTCCGCTTACAAAAGTTAAAGATATCT 57.555 29.630 0.00 0.00 34.99 1.98
228 229 9.444600 TCCGCTTACAAAAGTTAAAGATATCTT 57.555 29.630 12.37 12.37 34.82 2.40
260 261 8.293699 ACCATTAAGGGTTTCAAGATCATAAC 57.706 34.615 5.84 0.00 43.89 1.89
262 263 8.408601 CCATTAAGGGTTTCAAGATCATAACTG 58.591 37.037 0.00 0.00 0.00 3.16
266 267 4.458989 GGGTTTCAAGATCATAACTGTGCA 59.541 41.667 0.00 0.00 0.00 4.57
267 268 5.392380 GGGTTTCAAGATCATAACTGTGCAG 60.392 44.000 0.00 0.00 0.00 4.41
268 269 5.412594 GGTTTCAAGATCATAACTGTGCAGA 59.587 40.000 6.17 0.00 0.00 4.26
269 270 6.402983 GGTTTCAAGATCATAACTGTGCAGAG 60.403 42.308 9.74 9.74 0.00 3.35
270 271 4.763073 TCAAGATCATAACTGTGCAGAGG 58.237 43.478 16.19 0.00 0.00 3.69
287 288 2.508928 GTGGGCGGCTTGGCTATA 59.491 61.111 9.56 0.00 44.11 1.31
288 289 1.073199 GTGGGCGGCTTGGCTATAT 59.927 57.895 9.56 0.00 44.11 0.86
291 292 1.633432 TGGGCGGCTTGGCTATATAAT 59.367 47.619 9.56 0.00 44.11 1.28
292 293 2.841266 TGGGCGGCTTGGCTATATAATA 59.159 45.455 9.56 0.00 44.11 0.98
293 294 3.458118 TGGGCGGCTTGGCTATATAATAT 59.542 43.478 9.56 0.00 44.11 1.28
298 299 6.258160 GCGGCTTGGCTATATAATATTTGTG 58.742 40.000 0.00 0.00 0.00 3.33
299 300 6.258160 CGGCTTGGCTATATAATATTTGTGC 58.742 40.000 0.00 0.00 0.00 4.57
301 302 7.415541 CGGCTTGGCTATATAATATTTGTGCAT 60.416 37.037 0.00 0.00 0.00 3.96
318 319 7.509141 TTGTGCATATATTGACGAAATGGAT 57.491 32.000 0.00 0.00 0.00 3.41
321 322 6.003326 TGCATATATTGACGAAATGGATGGT 58.997 36.000 0.00 0.00 0.00 3.55
335 336 6.575244 AATGGATGGTGTAGAATAGGTCAA 57.425 37.500 0.00 0.00 0.00 3.18
353 354 4.349365 GTCAAGGACCCCCAATTATTTGA 58.651 43.478 0.00 0.00 34.60 2.69
358 359 3.565670 GGACCCCCAATTATTTGAGTGGT 60.566 47.826 0.00 2.90 33.05 4.16
363 364 5.704978 CCCCCAATTATTTGAGTGGTTTTTG 59.295 40.000 0.00 0.00 33.05 2.44
364 365 6.295249 CCCCAATTATTTGAGTGGTTTTTGT 58.705 36.000 0.00 0.00 33.05 2.83
365 366 7.445945 CCCCAATTATTTGAGTGGTTTTTGTA 58.554 34.615 0.00 0.00 33.05 2.41
398 399 2.622942 TGAACCACCTGCAATTCTCAAC 59.377 45.455 0.00 0.00 0.00 3.18
427 428 4.274950 CCCTATCGTATTTCCATTTTGCGT 59.725 41.667 0.00 0.00 0.00 5.24
428 429 5.220970 CCCTATCGTATTTCCATTTTGCGTT 60.221 40.000 0.00 0.00 0.00 4.84
437 438 5.396750 TTCCATTTTGCGTTTTTACTTGC 57.603 34.783 0.00 0.00 0.00 4.01
532 543 3.058293 TCCTTTGCTTAACAATCACGCTG 60.058 43.478 0.00 0.00 38.31 5.18
825 843 2.167487 GCGAACTCTTCAATCCTCTCCT 59.833 50.000 0.00 0.00 0.00 3.69
826 844 3.736740 GCGAACTCTTCAATCCTCTCCTC 60.737 52.174 0.00 0.00 0.00 3.71
846 872 1.134788 CAGGTAACCGAATCCTCGCTT 60.135 52.381 0.00 0.00 44.04 4.68
854 880 0.107459 GAATCCTCGCTTTGCTCCCT 60.107 55.000 0.00 0.00 0.00 4.20
884 925 2.290464 TCGGTGGATTTCGTTGTGTTT 58.710 42.857 0.00 0.00 0.00 2.83
892 933 1.978712 TTCGTTGTGTTTTCCGCGCA 61.979 50.000 8.75 0.00 0.00 6.09
945 986 1.749063 GATTTAAGCTGGGGTTTCCGG 59.251 52.381 0.00 0.00 44.90 5.14
1311 1353 1.457455 CAACAACTGGGCCAAGGGT 60.457 57.895 13.11 6.48 0.00 4.34
1421 1483 1.275291 CCCCTTTCTTCAGTAGTCGCA 59.725 52.381 0.00 0.00 0.00 5.10
1435 1501 1.007336 GTCGCACCAGTTACTCCGTG 61.007 60.000 5.10 5.10 0.00 4.94
1776 1902 3.917988 CTGTAAGCAGATCTGTGACACA 58.082 45.455 23.38 18.82 45.28 3.72
1782 1915 4.202441 AGCAGATCTGTGACACAAAGTTT 58.798 39.130 23.38 0.00 0.00 2.66
1783 1916 4.036027 AGCAGATCTGTGACACAAAGTTTG 59.964 41.667 23.38 14.13 0.00 2.93
1794 1927 5.008613 TGACACAAAGTTTGATTACCTGCTC 59.991 40.000 22.23 9.05 0.00 4.26
1801 1940 4.929808 AGTTTGATTACCTGCTCGTACTTG 59.070 41.667 0.00 0.00 0.00 3.16
1807 1974 1.269166 CCTGCTCGTACTTGCGTTAG 58.731 55.000 0.00 0.00 0.00 2.34
1848 2037 2.872245 CGTGGTGAATTATAGCACTGGG 59.128 50.000 17.28 4.29 42.63 4.45
1859 2048 1.588082 GCACTGGGCAGTCAATTGG 59.412 57.895 5.42 0.00 43.97 3.16
1867 2056 1.269448 GGCAGTCAATTGGCGAAGAAA 59.731 47.619 4.02 0.00 33.76 2.52
1896 2094 7.272515 CGTTGTCAGTTGTCATAGTTTTGTTTT 59.727 33.333 0.00 0.00 0.00 2.43
1915 2113 5.883115 TGTTTTGGTGATACAAACTGACTGA 59.117 36.000 0.00 0.00 39.82 3.41
1925 2123 4.433615 ACAAACTGACTGACTGTAGTGTG 58.566 43.478 0.00 0.00 35.12 3.82
1926 2125 2.802787 ACTGACTGACTGTAGTGTGC 57.197 50.000 0.00 0.00 0.00 4.57
1933 2132 4.199310 ACTGACTGTAGTGTGCAAAATGT 58.801 39.130 0.00 0.00 0.00 2.71
1939 2138 5.105957 ACTGTAGTGTGCAAAATGTTGTCAA 60.106 36.000 0.00 0.00 37.06 3.18
1974 2173 8.893727 GCTAACTGGTTGATGTCATTAGTTAAT 58.106 33.333 0.00 0.00 31.71 1.40
1997 2196 4.796110 ATTATACCACCTGACAGCCATT 57.204 40.909 0.00 0.00 0.00 3.16
2001 2200 3.237268 ACCACCTGACAGCCATTTAAA 57.763 42.857 0.00 0.00 0.00 1.52
2005 2204 4.202050 CCACCTGACAGCCATTTAAATAGC 60.202 45.833 10.22 10.22 0.00 2.97
2011 2210 6.862209 TGACAGCCATTTAAATAGCGATTTT 58.138 32.000 10.16 0.00 36.62 1.82
2012 2211 6.751425 TGACAGCCATTTAAATAGCGATTTTG 59.249 34.615 10.16 7.79 36.62 2.44
2062 2281 6.403866 TTTCAAGTGTCATATTTTGCCAGT 57.596 33.333 0.00 0.00 0.00 4.00
2066 2285 7.946207 TCAAGTGTCATATTTTGCCAGTTTTA 58.054 30.769 0.00 0.00 24.41 1.52
2076 2295 9.791801 ATATTTTGCCAGTTTTAATTTTGGTCT 57.208 25.926 0.00 0.00 33.21 3.85
2146 2366 0.108520 CCAACTGGTTGATGCCATGC 60.109 55.000 14.17 0.00 42.93 4.06
2148 2368 2.093890 CAACTGGTTGATGCCATGCTA 58.906 47.619 7.61 0.00 42.93 3.49
2155 2375 3.470709 GTTGATGCCATGCTAGAAGCTA 58.529 45.455 0.00 0.00 42.97 3.32
2250 2470 1.927895 CGCTGAGGTTGGATGTAGTC 58.072 55.000 0.00 0.00 0.00 2.59
2311 2531 6.428159 CCTACCTGTCATTAAGTATTGATGGC 59.572 42.308 0.00 0.00 45.65 4.40
2356 2576 6.226787 ACTGATAAATGCTGGTAGATGTAGC 58.773 40.000 0.00 0.00 37.93 3.58
2451 2671 4.979815 TGAACCTATACATCATTACGTGCG 59.020 41.667 0.00 0.00 0.00 5.34
2504 2724 9.650539 CCTGATTCCACTTGATAAGACTATATG 57.349 37.037 0.00 0.00 0.00 1.78
2640 2985 2.897436 TCGCTGATCTGTGAATCTTGG 58.103 47.619 12.84 0.00 0.00 3.61
2643 2988 2.613133 GCTGATCTGTGAATCTTGGCTC 59.387 50.000 1.27 0.00 0.00 4.70
2710 3055 2.113986 GGTGTCACCTGCTGCCTT 59.886 61.111 15.22 0.00 34.73 4.35
3004 3349 1.583054 ACGTGCAGAACAAGAACTCC 58.417 50.000 0.00 0.00 0.00 3.85
3480 3828 2.485903 TGGATTTGTACTGCGTTCGTT 58.514 42.857 0.00 0.00 0.00 3.85
3579 3927 9.846248 GATTTGAAATACAGTAGAATGCTTTGT 57.154 29.630 0.00 0.00 0.00 2.83
3590 3938 8.128582 CAGTAGAATGCTTTGTAGTTTGAACAA 58.871 33.333 0.00 0.00 35.12 2.83
3593 3941 7.715657 AGAATGCTTTGTAGTTTGAACAATGA 58.284 30.769 6.15 0.00 36.75 2.57
3594 3942 8.362639 AGAATGCTTTGTAGTTTGAACAATGAT 58.637 29.630 6.15 0.00 36.75 2.45
3622 3970 0.036732 TCTGCATGTTGTCCTGTCCC 59.963 55.000 0.00 0.00 0.00 4.46
3623 3971 0.962356 CTGCATGTTGTCCTGTCCCC 60.962 60.000 0.00 0.00 0.00 4.81
3629 3977 1.766864 TTGTCCTGTCCCCGGTTCA 60.767 57.895 0.00 0.00 0.00 3.18
3630 3978 1.764571 TTGTCCTGTCCCCGGTTCAG 61.765 60.000 0.00 5.76 0.00 3.02
3635 3983 0.602905 CTGTCCCCGGTTCAGTTCAC 60.603 60.000 0.00 0.00 0.00 3.18
3639 3987 1.302511 CCCGGTTCAGTTCACCTGG 60.303 63.158 0.00 0.00 41.83 4.45
3656 4004 5.598005 TCACCTGGATTGAAATTTCAGTGTT 59.402 36.000 23.98 12.49 38.61 3.32
3663 4011 8.999431 TGGATTGAAATTTCAGTGTTACTCTAC 58.001 33.333 19.63 3.39 38.61 2.59
3673 4021 2.161808 GTGTTACTCTACTCGCTGCAGA 59.838 50.000 20.43 0.00 0.00 4.26
3679 4027 1.613925 TCTACTCGCTGCAGAACTTGT 59.386 47.619 20.43 10.37 0.00 3.16
3683 4031 3.403038 ACTCGCTGCAGAACTTGTAAAT 58.597 40.909 20.43 0.00 0.00 1.40
3704 4052 9.280174 GTAAATCCCGGATTTGTGAGAAATATA 57.720 33.333 28.67 7.39 41.55 0.86
3709 4057 6.016276 CCCGGATTTGTGAGAAATATAAAGGG 60.016 42.308 0.73 0.00 0.00 3.95
3710 4058 6.546034 CCGGATTTGTGAGAAATATAAAGGGT 59.454 38.462 0.00 0.00 0.00 4.34
3720 4070 6.478129 AGAAATATAAAGGGTTGTGACGGAA 58.522 36.000 0.00 0.00 0.00 4.30
3725 4075 1.070786 GGGTTGTGACGGAAGCAGA 59.929 57.895 0.00 0.00 0.00 4.26
3734 4084 2.301870 TGACGGAAGCAGATTGTAGGTT 59.698 45.455 0.00 0.00 0.00 3.50
3735 4085 2.930682 GACGGAAGCAGATTGTAGGTTC 59.069 50.000 0.00 0.00 40.49 3.62
3737 4087 3.055094 ACGGAAGCAGATTGTAGGTTCAT 60.055 43.478 0.00 0.00 42.37 2.57
3738 4088 3.557595 CGGAAGCAGATTGTAGGTTCATC 59.442 47.826 0.00 0.00 42.37 2.92
3739 4089 3.557595 GGAAGCAGATTGTAGGTTCATCG 59.442 47.826 0.00 0.00 42.37 3.84
3740 4090 4.433615 GAAGCAGATTGTAGGTTCATCGA 58.566 43.478 0.00 0.00 40.80 3.59
3741 4091 4.679373 AGCAGATTGTAGGTTCATCGAT 57.321 40.909 0.00 0.00 0.00 3.59
3742 4092 5.791336 AGCAGATTGTAGGTTCATCGATA 57.209 39.130 0.00 0.00 0.00 2.92
3743 4093 6.352016 AGCAGATTGTAGGTTCATCGATAT 57.648 37.500 0.00 0.00 0.00 1.63
3744 4094 7.468141 AGCAGATTGTAGGTTCATCGATATA 57.532 36.000 0.00 0.00 0.00 0.86
3745 4095 8.072321 AGCAGATTGTAGGTTCATCGATATAT 57.928 34.615 0.00 0.00 0.00 0.86
3746 4096 8.194104 AGCAGATTGTAGGTTCATCGATATATC 58.806 37.037 0.00 2.34 0.00 1.63
3747 4097 8.194104 GCAGATTGTAGGTTCATCGATATATCT 58.806 37.037 10.93 0.00 0.00 1.98
3750 4100 9.862371 GATTGTAGGTTCATCGATATATCTTGT 57.138 33.333 10.93 0.00 0.00 3.16
3753 4103 9.692749 TGTAGGTTCATCGATATATCTTGTTTC 57.307 33.333 10.93 4.45 0.00 2.78
3785 4135 6.707440 TTGGTGATTGCGATTATAAATGGT 57.293 33.333 0.00 0.00 0.00 3.55
3786 4136 6.707440 TGGTGATTGCGATTATAAATGGTT 57.293 33.333 0.00 0.00 0.00 3.67
3787 4137 7.809546 TGGTGATTGCGATTATAAATGGTTA 57.190 32.000 0.00 0.00 0.00 2.85
3788 4138 8.226819 TGGTGATTGCGATTATAAATGGTTAA 57.773 30.769 0.00 0.00 0.00 2.01
3807 4157 3.985553 AACCCCTTTCTTTAACACCCT 57.014 42.857 0.00 0.00 0.00 4.34
3824 4174 1.196104 CCTCACCCCACCCTCGTAAA 61.196 60.000 0.00 0.00 0.00 2.01
3876 4226 3.476552 TCTCACCAAACACAATCCTGTC 58.523 45.455 0.00 0.00 31.64 3.51
3898 4248 0.038709 ATCGCAGCGATTCTAGCTCC 60.039 55.000 24.88 0.00 44.59 4.70
3899 4249 1.103987 TCGCAGCGATTCTAGCTCCT 61.104 55.000 15.11 0.00 44.06 3.69
3924 4274 6.083630 TGCGGTTAGAAATCAAAGAAATTCG 58.916 36.000 0.00 0.00 0.00 3.34
3930 4280 4.795278 AGAAATCAAAGAAATTCGATGCGC 59.205 37.500 0.00 0.00 0.00 6.09
3936 4286 1.394917 AGAAATTCGATGCGCAGTGAC 59.605 47.619 18.32 6.42 0.00 3.67
3939 4289 2.557059 ATTCGATGCGCAGTGACGGA 62.557 55.000 18.32 13.96 37.93 4.69
3972 4322 9.332502 ACTAAATTGACATACAGTACAACAACA 57.667 29.630 0.00 0.00 0.00 3.33
3980 4330 7.581476 ACATACAGTACAACAACAAATACAGC 58.419 34.615 0.00 0.00 0.00 4.40
3986 4336 1.165270 ACAACAAATACAGCCGAGGC 58.835 50.000 5.89 5.89 42.33 4.70
3987 4337 0.451783 CAACAAATACAGCCGAGGCC 59.548 55.000 10.95 0.00 43.17 5.19
4004 4354 3.885521 CGTCCTCCGACTACCCGC 61.886 72.222 0.00 0.00 39.56 6.13
4063 4413 2.793232 CCGCGTGTCTATTTTAGCTACC 59.207 50.000 4.92 0.00 0.00 3.18
4078 4428 1.858091 CTACCATGTGACATCCTCGC 58.142 55.000 0.00 0.00 0.00 5.03
4088 4438 3.057456 GTGACATCCTCGCCTCGTATATT 60.057 47.826 0.00 0.00 0.00 1.28
4095 4445 3.425892 CCTCGCCTCGTATATTAGGTTCG 60.426 52.174 5.50 2.59 35.16 3.95
4131 4497 6.613755 TTTTTACAAGTCCAACTCTAGCAC 57.386 37.500 0.00 0.00 0.00 4.40
4150 4516 3.428725 GCACAACTTTCACCATTGACACA 60.429 43.478 0.00 0.00 0.00 3.72
4152 4518 5.507149 GCACAACTTTCACCATTGACACATA 60.507 40.000 0.00 0.00 0.00 2.29
4181 4547 9.694137 CTACCTAATGTGTCTATTTTAGCTACC 57.306 37.037 0.00 0.00 0.00 3.18
4182 4548 8.086143 ACCTAATGTGTCTATTTTAGCTACCA 57.914 34.615 0.00 0.00 0.00 3.25
4183 4549 8.714906 ACCTAATGTGTCTATTTTAGCTACCAT 58.285 33.333 0.00 0.00 0.00 3.55
4184 4550 8.993121 CCTAATGTGTCTATTTTAGCTACCATG 58.007 37.037 0.00 0.00 0.00 3.66
4217 4583 4.586421 TCACCATTGACCTTGCATTTTACA 59.414 37.500 0.00 0.00 0.00 2.41
4219 4585 4.244862 CCATTGACCTTGCATTTTACACC 58.755 43.478 0.00 0.00 0.00 4.16
4235 4601 2.145536 ACACCGGTTATTTTGTCCGTC 58.854 47.619 2.97 0.00 42.30 4.79
4236 4602 1.465777 CACCGGTTATTTTGTCCGTCC 59.534 52.381 2.97 0.00 42.30 4.79
4239 4605 1.812235 GGTTATTTTGTCCGTCCCGT 58.188 50.000 0.00 0.00 0.00 5.28
4242 4608 2.671130 TATTTTGTCCGTCCCGTACC 57.329 50.000 0.00 0.00 0.00 3.34
4289 4655 1.812235 TGCTATGCAACACACTCAGG 58.188 50.000 0.00 0.00 34.76 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.748605 GCAGAAGTACTCCCATCGATG 58.251 52.381 18.76 18.76 0.00 3.84
5 6 0.738975 CGCAGAAGTACTCCCATCGA 59.261 55.000 0.00 0.00 0.00 3.59
6 7 0.738975 TCGCAGAAGTACTCCCATCG 59.261 55.000 0.00 0.00 0.00 3.84
7 8 2.362397 TCATCGCAGAAGTACTCCCATC 59.638 50.000 0.00 0.00 43.58 3.51
8 9 2.388735 TCATCGCAGAAGTACTCCCAT 58.611 47.619 0.00 0.00 43.58 4.00
9 10 1.847328 TCATCGCAGAAGTACTCCCA 58.153 50.000 0.00 0.00 43.58 4.37
10 11 2.748605 CATCATCGCAGAAGTACTCCC 58.251 52.381 0.00 0.00 43.58 4.30
11 12 2.131183 GCATCATCGCAGAAGTACTCC 58.869 52.381 0.00 0.00 43.58 3.85
12 13 2.814269 TGCATCATCGCAGAAGTACTC 58.186 47.619 0.00 0.00 43.58 2.59
13 14 2.967599 TGCATCATCGCAGAAGTACT 57.032 45.000 0.00 0.00 43.58 2.73
21 22 3.009026 ACACATTAACTGCATCATCGCA 58.991 40.909 0.00 0.00 40.32 5.10
22 23 3.546815 GGACACATTAACTGCATCATCGC 60.547 47.826 0.00 0.00 0.00 4.58
23 24 3.622612 TGGACACATTAACTGCATCATCG 59.377 43.478 0.00 0.00 0.00 3.84
24 25 5.297527 TCATGGACACATTAACTGCATCATC 59.702 40.000 0.00 0.00 34.35 2.92
25 26 5.195185 TCATGGACACATTAACTGCATCAT 58.805 37.500 0.00 0.00 34.35 2.45
26 27 4.587891 TCATGGACACATTAACTGCATCA 58.412 39.130 0.00 0.00 34.35 3.07
27 28 5.762825 ATCATGGACACATTAACTGCATC 57.237 39.130 0.00 0.00 34.35 3.91
28 29 6.334989 CAAATCATGGACACATTAACTGCAT 58.665 36.000 0.00 0.00 34.35 3.96
29 30 5.712004 CAAATCATGGACACATTAACTGCA 58.288 37.500 0.00 0.00 34.35 4.41
30 31 4.563976 GCAAATCATGGACACATTAACTGC 59.436 41.667 0.00 0.00 34.35 4.40
31 32 5.104374 GGCAAATCATGGACACATTAACTG 58.896 41.667 0.00 0.00 34.35 3.16
32 33 4.142403 CGGCAAATCATGGACACATTAACT 60.142 41.667 0.00 0.00 34.35 2.24
33 34 4.104776 CGGCAAATCATGGACACATTAAC 58.895 43.478 0.00 0.00 34.35 2.01
34 35 4.013050 TCGGCAAATCATGGACACATTAA 58.987 39.130 0.00 0.00 34.35 1.40
35 36 3.615155 TCGGCAAATCATGGACACATTA 58.385 40.909 0.00 0.00 34.35 1.90
36 37 2.445427 TCGGCAAATCATGGACACATT 58.555 42.857 0.00 0.00 34.35 2.71
37 38 2.127271 TCGGCAAATCATGGACACAT 57.873 45.000 0.00 0.00 37.99 3.21
38 39 2.127271 ATCGGCAAATCATGGACACA 57.873 45.000 0.00 0.00 0.00 3.72
39 40 4.351192 GTTAATCGGCAAATCATGGACAC 58.649 43.478 0.00 0.00 0.00 3.67
40 41 3.064682 CGTTAATCGGCAAATCATGGACA 59.935 43.478 0.00 0.00 35.71 4.02
41 42 3.617669 CGTTAATCGGCAAATCATGGAC 58.382 45.455 0.00 0.00 35.71 4.02
42 43 2.032799 GCGTTAATCGGCAAATCATGGA 59.967 45.455 0.00 0.00 40.26 3.41
43 44 2.384382 GCGTTAATCGGCAAATCATGG 58.616 47.619 0.00 0.00 40.26 3.66
44 45 2.036217 CGCGTTAATCGGCAAATCATG 58.964 47.619 0.00 0.00 40.26 3.07
45 46 1.668751 ACGCGTTAATCGGCAAATCAT 59.331 42.857 5.58 0.00 40.26 2.45
46 47 1.061421 GACGCGTTAATCGGCAAATCA 59.939 47.619 15.53 0.00 40.26 2.57
47 48 1.061421 TGACGCGTTAATCGGCAAATC 59.939 47.619 15.53 0.00 42.62 2.17
48 49 1.062002 CTGACGCGTTAATCGGCAAAT 59.938 47.619 15.53 0.00 45.12 2.32
49 50 0.440758 CTGACGCGTTAATCGGCAAA 59.559 50.000 15.53 0.00 45.12 3.68
50 51 0.388778 TCTGACGCGTTAATCGGCAA 60.389 50.000 15.53 0.00 45.12 4.52
51 52 0.800683 CTCTGACGCGTTAATCGGCA 60.801 55.000 15.53 3.39 43.46 5.69
52 53 1.480219 CCTCTGACGCGTTAATCGGC 61.480 60.000 15.53 0.00 40.26 5.54
53 54 1.480219 GCCTCTGACGCGTTAATCGG 61.480 60.000 15.53 12.00 40.26 4.18
54 55 1.798368 CGCCTCTGACGCGTTAATCG 61.798 60.000 15.53 9.13 44.55 3.34
55 56 1.917921 CGCCTCTGACGCGTTAATC 59.082 57.895 15.53 0.00 44.55 1.75
56 57 4.088421 CGCCTCTGACGCGTTAAT 57.912 55.556 15.53 0.00 44.55 1.40
71 72 2.200170 AAAAGCAGATCGGCCAACGC 62.200 55.000 14.56 0.00 43.86 4.84
72 73 0.454957 CAAAAGCAGATCGGCCAACG 60.455 55.000 14.56 0.00 46.11 4.10
73 74 0.598065 ACAAAAGCAGATCGGCCAAC 59.402 50.000 14.56 0.00 0.00 3.77
74 75 1.327303 AACAAAAGCAGATCGGCCAA 58.673 45.000 14.56 0.00 0.00 4.52
75 76 1.327303 AAACAAAAGCAGATCGGCCA 58.673 45.000 14.56 0.00 0.00 5.36
76 77 2.288152 TGAAAACAAAAGCAGATCGGCC 60.288 45.455 14.56 0.00 0.00 6.13
77 78 3.011949 TGAAAACAAAAGCAGATCGGC 57.988 42.857 10.10 10.10 0.00 5.54
78 79 4.797471 TCATGAAAACAAAAGCAGATCGG 58.203 39.130 0.00 0.00 0.00 4.18
79 80 6.144854 TCTTCATGAAAACAAAAGCAGATCG 58.855 36.000 9.88 0.00 0.00 3.69
80 81 7.144000 ACTCTTCATGAAAACAAAAGCAGATC 58.856 34.615 9.88 0.00 0.00 2.75
81 82 7.047460 ACTCTTCATGAAAACAAAAGCAGAT 57.953 32.000 9.88 0.00 0.00 2.90
82 83 6.455360 ACTCTTCATGAAAACAAAAGCAGA 57.545 33.333 9.88 0.00 0.00 4.26
83 84 6.361748 GCTACTCTTCATGAAAACAAAAGCAG 59.638 38.462 9.88 2.54 0.00 4.24
84 85 6.183360 TGCTACTCTTCATGAAAACAAAAGCA 60.183 34.615 18.36 18.36 0.00 3.91
85 86 6.142958 GTGCTACTCTTCATGAAAACAAAAGC 59.857 38.462 9.88 13.19 0.00 3.51
86 87 6.358030 CGTGCTACTCTTCATGAAAACAAAAG 59.642 38.462 9.88 4.10 0.00 2.27
87 88 6.198687 CGTGCTACTCTTCATGAAAACAAAA 58.801 36.000 9.88 0.00 0.00 2.44
88 89 5.747565 CGTGCTACTCTTCATGAAAACAAA 58.252 37.500 9.88 0.00 0.00 2.83
89 90 4.319477 GCGTGCTACTCTTCATGAAAACAA 60.319 41.667 9.88 0.00 0.00 2.83
90 91 3.186409 GCGTGCTACTCTTCATGAAAACA 59.814 43.478 9.88 0.00 0.00 2.83
91 92 3.186409 TGCGTGCTACTCTTCATGAAAAC 59.814 43.478 9.88 0.00 0.00 2.43
92 93 3.398406 TGCGTGCTACTCTTCATGAAAA 58.602 40.909 9.88 0.00 0.00 2.29
93 94 3.038788 TGCGTGCTACTCTTCATGAAA 57.961 42.857 9.88 0.26 0.00 2.69
94 95 2.741759 TGCGTGCTACTCTTCATGAA 57.258 45.000 8.12 8.12 0.00 2.57
95 96 2.543641 CATGCGTGCTACTCTTCATGA 58.456 47.619 0.00 0.00 34.79 3.07
117 118 1.082104 GAAGCAAAAGCCCGACACG 60.082 57.895 0.00 0.00 0.00 4.49
118 119 0.668535 AAGAAGCAAAAGCCCGACAC 59.331 50.000 0.00 0.00 0.00 3.67
119 120 1.066908 CAAAGAAGCAAAAGCCCGACA 59.933 47.619 0.00 0.00 0.00 4.35
120 121 1.770957 CAAAGAAGCAAAAGCCCGAC 58.229 50.000 0.00 0.00 0.00 4.79
121 122 0.031994 GCAAAGAAGCAAAAGCCCGA 59.968 50.000 0.00 0.00 0.00 5.14
122 123 0.945743 GGCAAAGAAGCAAAAGCCCG 60.946 55.000 0.00 0.00 36.17 6.13
123 124 0.394192 AGGCAAAGAAGCAAAAGCCC 59.606 50.000 0.00 0.00 42.97 5.19
124 125 1.342496 AGAGGCAAAGAAGCAAAAGCC 59.658 47.619 0.00 0.00 42.31 4.35
125 126 2.035066 TGAGAGGCAAAGAAGCAAAAGC 59.965 45.455 0.00 0.00 35.83 3.51
126 127 3.996150 TGAGAGGCAAAGAAGCAAAAG 57.004 42.857 0.00 0.00 35.83 2.27
127 128 6.403866 TTTATGAGAGGCAAAGAAGCAAAA 57.596 33.333 0.00 0.00 35.83 2.44
128 129 6.403866 TTTTATGAGAGGCAAAGAAGCAAA 57.596 33.333 0.00 0.00 35.83 3.68
129 130 6.403866 TTTTTATGAGAGGCAAAGAAGCAA 57.596 33.333 0.00 0.00 35.83 3.91
155 156 9.875660 GGCGAAAAACAAACGAAAATATTATAC 57.124 29.630 0.00 0.00 0.00 1.47
156 157 9.622004 TGGCGAAAAACAAACGAAAATATTATA 57.378 25.926 0.00 0.00 0.00 0.98
157 158 8.522178 TGGCGAAAAACAAACGAAAATATTAT 57.478 26.923 0.00 0.00 0.00 1.28
158 159 7.925703 TGGCGAAAAACAAACGAAAATATTA 57.074 28.000 0.00 0.00 0.00 0.98
159 160 6.830114 TGGCGAAAAACAAACGAAAATATT 57.170 29.167 0.00 0.00 0.00 1.28
160 161 7.414814 AATGGCGAAAAACAAACGAAAATAT 57.585 28.000 0.00 0.00 0.00 1.28
161 162 6.830114 AATGGCGAAAAACAAACGAAAATA 57.170 29.167 0.00 0.00 0.00 1.40
162 163 5.726729 AATGGCGAAAAACAAACGAAAAT 57.273 30.435 0.00 0.00 0.00 1.82
163 164 5.532025 AAATGGCGAAAAACAAACGAAAA 57.468 30.435 0.00 0.00 0.00 2.29
164 165 6.455246 GGTTAAATGGCGAAAAACAAACGAAA 60.455 34.615 0.00 0.00 0.00 3.46
165 166 5.005490 GGTTAAATGGCGAAAAACAAACGAA 59.995 36.000 0.00 0.00 0.00 3.85
166 167 4.503370 GGTTAAATGGCGAAAAACAAACGA 59.497 37.500 0.00 0.00 0.00 3.85
167 168 4.604261 CGGTTAAATGGCGAAAAACAAACG 60.604 41.667 0.00 0.00 0.00 3.60
168 169 4.503370 TCGGTTAAATGGCGAAAAACAAAC 59.497 37.500 0.00 0.00 0.00 2.93
169 170 4.679662 TCGGTTAAATGGCGAAAAACAAA 58.320 34.783 0.00 0.00 0.00 2.83
170 171 4.291783 CTCGGTTAAATGGCGAAAAACAA 58.708 39.130 0.00 0.00 0.00 2.83
171 172 3.854045 GCTCGGTTAAATGGCGAAAAACA 60.854 43.478 0.00 0.00 0.00 2.83
172 173 2.659757 GCTCGGTTAAATGGCGAAAAAC 59.340 45.455 0.00 0.00 0.00 2.43
173 174 2.293677 TGCTCGGTTAAATGGCGAAAAA 59.706 40.909 0.00 0.00 0.00 1.94
174 175 1.880675 TGCTCGGTTAAATGGCGAAAA 59.119 42.857 0.00 0.00 0.00 2.29
175 176 1.524848 TGCTCGGTTAAATGGCGAAA 58.475 45.000 0.00 0.00 0.00 3.46
176 177 1.198178 GTTGCTCGGTTAAATGGCGAA 59.802 47.619 0.00 0.00 0.00 4.70
177 178 0.800012 GTTGCTCGGTTAAATGGCGA 59.200 50.000 0.00 0.00 0.00 5.54
178 179 0.802494 AGTTGCTCGGTTAAATGGCG 59.198 50.000 0.00 0.00 0.00 5.69
179 180 2.084546 AGAGTTGCTCGGTTAAATGGC 58.915 47.619 0.00 0.00 35.36 4.40
190 191 2.263945 GTAAGCGGAAGAGAGTTGCTC 58.736 52.381 0.00 0.00 44.29 4.26
191 192 1.618837 TGTAAGCGGAAGAGAGTTGCT 59.381 47.619 0.00 0.00 37.53 3.91
192 193 2.080286 TGTAAGCGGAAGAGAGTTGC 57.920 50.000 0.00 0.00 0.00 4.17
193 194 4.511826 ACTTTTGTAAGCGGAAGAGAGTTG 59.488 41.667 0.00 0.00 34.60 3.16
194 195 4.704965 ACTTTTGTAAGCGGAAGAGAGTT 58.295 39.130 0.00 0.00 34.60 3.01
195 196 4.338379 ACTTTTGTAAGCGGAAGAGAGT 57.662 40.909 0.00 0.00 34.60 3.24
196 197 6.780706 TTAACTTTTGTAAGCGGAAGAGAG 57.219 37.500 0.00 0.00 34.60 3.20
197 198 6.987992 TCTTTAACTTTTGTAAGCGGAAGAGA 59.012 34.615 0.00 0.00 34.60 3.10
198 199 7.186021 TCTTTAACTTTTGTAAGCGGAAGAG 57.814 36.000 0.00 0.00 34.60 2.85
199 200 7.739498 ATCTTTAACTTTTGTAAGCGGAAGA 57.261 32.000 0.00 0.00 34.60 2.87
200 201 9.704098 GATATCTTTAACTTTTGTAAGCGGAAG 57.296 33.333 0.00 0.00 34.60 3.46
201 202 9.444600 AGATATCTTTAACTTTTGTAAGCGGAA 57.555 29.630 0.00 0.00 34.60 4.30
202 203 9.444600 AAGATATCTTTAACTTTTGTAAGCGGA 57.555 29.630 12.37 0.00 31.36 5.54
219 220 8.260114 CCCTTAATGGTTTGCAAAAGATATCTT 58.740 33.333 14.67 12.37 37.91 2.40
220 221 7.400052 ACCCTTAATGGTTTGCAAAAGATATCT 59.600 33.333 14.67 0.00 33.91 1.98
221 222 7.555965 ACCCTTAATGGTTTGCAAAAGATATC 58.444 34.615 14.67 0.00 33.91 1.63
222 223 7.494922 ACCCTTAATGGTTTGCAAAAGATAT 57.505 32.000 14.67 3.34 33.91 1.63
223 224 6.926630 ACCCTTAATGGTTTGCAAAAGATA 57.073 33.333 14.67 2.47 33.91 1.98
224 225 5.823861 ACCCTTAATGGTTTGCAAAAGAT 57.176 34.783 14.67 5.91 33.91 2.40
225 226 5.622346 AACCCTTAATGGTTTGCAAAAGA 57.378 34.783 14.67 3.47 46.45 2.52
235 236 8.116026 AGTTATGATCTTGAAACCCTTAATGGT 58.884 33.333 0.00 0.00 41.55 3.55
236 237 8.408601 CAGTTATGATCTTGAAACCCTTAATGG 58.591 37.037 0.00 0.00 0.00 3.16
237 238 8.960591 ACAGTTATGATCTTGAAACCCTTAATG 58.039 33.333 0.00 0.00 0.00 1.90
238 239 8.960591 CACAGTTATGATCTTGAAACCCTTAAT 58.039 33.333 0.00 0.00 0.00 1.40
239 240 7.094377 GCACAGTTATGATCTTGAAACCCTTAA 60.094 37.037 0.00 0.00 0.00 1.85
269 270 2.411765 ATATAGCCAAGCCGCCCACC 62.412 60.000 0.00 0.00 0.00 4.61
270 271 0.323629 TATATAGCCAAGCCGCCCAC 59.676 55.000 0.00 0.00 0.00 4.61
291 292 9.061435 TCCATTTCGTCAATATATGCACAAATA 57.939 29.630 0.00 0.00 0.00 1.40
292 293 7.939782 TCCATTTCGTCAATATATGCACAAAT 58.060 30.769 0.00 0.00 0.00 2.32
293 294 7.326968 TCCATTTCGTCAATATATGCACAAA 57.673 32.000 0.00 0.00 0.00 2.83
298 299 6.072508 ACACCATCCATTTCGTCAATATATGC 60.073 38.462 0.00 0.00 0.00 3.14
299 300 7.439157 ACACCATCCATTTCGTCAATATATG 57.561 36.000 0.00 0.00 0.00 1.78
301 302 7.958088 TCTACACCATCCATTTCGTCAATATA 58.042 34.615 0.00 0.00 0.00 0.86
309 310 5.611374 ACCTATTCTACACCATCCATTTCG 58.389 41.667 0.00 0.00 0.00 3.46
335 336 3.309848 CCACTCAAATAATTGGGGGTCCT 60.310 47.826 0.00 0.00 38.90 3.85
340 341 6.295249 ACAAAAACCACTCAAATAATTGGGG 58.705 36.000 0.00 0.00 41.61 4.96
363 364 8.629158 TGCAGGTGGTTCATTGAAAATATATAC 58.371 33.333 0.00 0.00 0.00 1.47
364 365 8.759481 TGCAGGTGGTTCATTGAAAATATATA 57.241 30.769 0.00 0.00 0.00 0.86
365 366 7.658525 TGCAGGTGGTTCATTGAAAATATAT 57.341 32.000 0.00 0.00 0.00 0.86
367 368 5.999205 TGCAGGTGGTTCATTGAAAATAT 57.001 34.783 0.00 0.00 0.00 1.28
368 369 5.798125 TTGCAGGTGGTTCATTGAAAATA 57.202 34.783 0.00 0.00 0.00 1.40
370 371 4.686191 ATTGCAGGTGGTTCATTGAAAA 57.314 36.364 0.00 0.00 0.00 2.29
371 372 4.344679 AGAATTGCAGGTGGTTCATTGAAA 59.655 37.500 0.00 0.00 0.00 2.69
372 373 3.896888 AGAATTGCAGGTGGTTCATTGAA 59.103 39.130 0.00 0.00 0.00 2.69
373 374 3.499338 AGAATTGCAGGTGGTTCATTGA 58.501 40.909 0.00 0.00 0.00 2.57
374 375 3.256383 TGAGAATTGCAGGTGGTTCATTG 59.744 43.478 0.00 0.00 0.00 2.82
375 376 3.499338 TGAGAATTGCAGGTGGTTCATT 58.501 40.909 0.00 0.00 0.00 2.57
376 377 3.159213 TGAGAATTGCAGGTGGTTCAT 57.841 42.857 0.00 0.00 0.00 2.57
377 378 2.622942 GTTGAGAATTGCAGGTGGTTCA 59.377 45.455 0.00 0.00 0.00 3.18
378 379 2.350772 CGTTGAGAATTGCAGGTGGTTC 60.351 50.000 0.00 0.00 0.00 3.62
379 380 1.608590 CGTTGAGAATTGCAGGTGGTT 59.391 47.619 0.00 0.00 0.00 3.67
380 381 1.238439 CGTTGAGAATTGCAGGTGGT 58.762 50.000 0.00 0.00 0.00 4.16
381 382 0.523072 CCGTTGAGAATTGCAGGTGG 59.477 55.000 0.00 0.00 0.00 4.61
382 383 0.109597 GCCGTTGAGAATTGCAGGTG 60.110 55.000 0.00 0.00 0.00 4.00
383 384 1.577328 CGCCGTTGAGAATTGCAGGT 61.577 55.000 0.00 0.00 0.00 4.00
384 385 1.135315 CGCCGTTGAGAATTGCAGG 59.865 57.895 0.00 0.00 0.00 4.85
385 386 0.179215 GTCGCCGTTGAGAATTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
386 387 1.573829 GGTCGCCGTTGAGAATTGCA 61.574 55.000 0.00 0.00 0.00 4.08
446 447 1.893137 GGACTTGTGGATGGTTTTCCC 59.107 52.381 0.00 0.00 39.73 3.97
447 448 2.296190 GTGGACTTGTGGATGGTTTTCC 59.704 50.000 0.00 0.00 41.14 3.13
448 449 2.955660 TGTGGACTTGTGGATGGTTTTC 59.044 45.455 0.00 0.00 0.00 2.29
450 451 2.091885 AGTGTGGACTTGTGGATGGTTT 60.092 45.455 0.00 0.00 0.00 3.27
451 452 1.494721 AGTGTGGACTTGTGGATGGTT 59.505 47.619 0.00 0.00 0.00 3.67
452 453 1.072331 GAGTGTGGACTTGTGGATGGT 59.928 52.381 0.00 0.00 30.16 3.55
453 454 1.072173 TGAGTGTGGACTTGTGGATGG 59.928 52.381 0.00 0.00 30.16 3.51
456 457 0.104120 CGTGAGTGTGGACTTGTGGA 59.896 55.000 0.00 0.00 30.16 4.02
457 458 0.179084 ACGTGAGTGTGGACTTGTGG 60.179 55.000 0.00 0.00 46.97 4.17
532 543 0.322546 AATGACCGAACTGCCCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
825 843 0.458669 GCGAGGATTCGGTTACCTGA 59.541 55.000 0.00 0.00 46.76 3.86
826 844 2.973420 GCGAGGATTCGGTTACCTG 58.027 57.895 0.00 0.00 46.76 4.00
846 872 1.453155 GAAGCGAAATCAGGGAGCAA 58.547 50.000 0.00 0.00 0.00 3.91
854 880 2.107950 AATCCACCGAAGCGAAATCA 57.892 45.000 0.00 0.00 0.00 2.57
959 1000 0.815615 GCAGAATCGAGCCGGGAATT 60.816 55.000 2.18 0.00 0.00 2.17
961 1002 2.186903 GCAGAATCGAGCCGGGAA 59.813 61.111 2.18 0.00 0.00 3.97
1311 1353 3.755628 GCGCCCTCGGTGTAGTGA 61.756 66.667 0.00 0.00 35.34 3.41
1776 1902 5.548406 AGTACGAGCAGGTAATCAAACTTT 58.452 37.500 0.00 0.00 0.00 2.66
1782 1915 2.734175 CGCAAGTACGAGCAGGTAATCA 60.734 50.000 12.06 0.00 34.06 2.57
1783 1916 1.852895 CGCAAGTACGAGCAGGTAATC 59.147 52.381 12.06 0.00 34.06 1.75
1801 1940 4.377431 GCCAGCATATCACATTACTAACGC 60.377 45.833 0.00 0.00 0.00 4.84
1807 1974 3.312421 ACGTTGCCAGCATATCACATTAC 59.688 43.478 0.00 0.00 0.00 1.89
1848 2037 2.030805 AGTTTCTTCGCCAATTGACTGC 60.031 45.455 7.12 0.64 0.00 4.40
1859 2048 1.859080 ACTGACAACGAGTTTCTTCGC 59.141 47.619 0.00 0.00 44.15 4.70
1867 2056 4.585955 ACTATGACAACTGACAACGAGT 57.414 40.909 0.00 0.00 0.00 4.18
1896 2094 4.100963 ACAGTCAGTCAGTTTGTATCACCA 59.899 41.667 0.00 0.00 0.00 4.17
1915 2113 4.397730 TGACAACATTTTGCACACTACAGT 59.602 37.500 0.00 0.00 36.00 3.55
1933 2132 5.825679 ACCAGTTAGCATAAGTTGTTGACAA 59.174 36.000 0.00 0.00 28.97 3.18
1939 2138 6.003950 ACATCAACCAGTTAGCATAAGTTGT 58.996 36.000 0.00 0.00 36.75 3.32
1948 2147 6.743575 AACTAATGACATCAACCAGTTAGC 57.256 37.500 0.00 0.00 0.00 3.09
1974 2173 5.904984 ATGGCTGTCAGGTGGTATAATAA 57.095 39.130 1.14 0.00 0.00 1.40
1975 2174 5.904984 AATGGCTGTCAGGTGGTATAATA 57.095 39.130 1.14 0.00 0.00 0.98
1976 2175 4.796110 AATGGCTGTCAGGTGGTATAAT 57.204 40.909 1.14 0.00 0.00 1.28
1982 2181 4.202050 GCTATTTAAATGGCTGTCAGGTGG 60.202 45.833 24.55 0.00 39.49 4.61
2001 2200 8.519526 TCAACATAAAAAGGACAAAATCGCTAT 58.480 29.630 0.00 0.00 0.00 2.97
2005 2204 8.795786 TCTTCAACATAAAAAGGACAAAATCG 57.204 30.769 0.00 0.00 0.00 3.34
2011 2210 8.287439 TGAACTTCTTCAACATAAAAAGGACA 57.713 30.769 0.00 0.00 33.20 4.02
2012 2211 9.750125 AATGAACTTCTTCAACATAAAAAGGAC 57.250 29.630 0.00 0.00 39.90 3.85
2041 2260 6.403866 AAACTGGCAAAATATGACACTTGA 57.596 33.333 0.00 0.00 44.10 3.02
2066 2285 6.265196 TGCAGTCAGTTCATAAGACCAAAATT 59.735 34.615 0.00 0.00 32.82 1.82
2076 2295 2.038952 ACAGGCTGCAGTCAGTTCATAA 59.961 45.455 22.50 0.00 42.29 1.90
2148 2368 8.031277 CCAGCAGATAAAACAAATTTAGCTTCT 58.969 33.333 0.00 0.00 45.48 2.85
2155 2375 9.603921 CATATTCCCAGCAGATAAAACAAATTT 57.396 29.630 0.00 0.00 34.92 1.82
2250 2470 2.549754 ACAGAGCACAAAAATCACTCCG 59.450 45.455 0.00 0.00 0.00 4.63
2356 2576 2.225068 ACAACCACTCTGAAGTCACG 57.775 50.000 0.00 0.00 31.71 4.35
2451 2671 6.715264 TCCCTTTCACTCAGATTAGAAAAACC 59.285 38.462 0.00 0.00 30.49 3.27
2504 2724 7.166970 GCAGCAAACCTAACTAACAAAAGTAAC 59.833 37.037 0.00 0.00 0.00 2.50
2621 2965 1.329906 GCCAAGATTCACAGATCAGCG 59.670 52.381 0.00 0.00 0.00 5.18
2640 2985 2.682856 TCACCAACTGTCAACAAAGAGC 59.317 45.455 0.00 0.00 0.00 4.09
2643 2988 3.016736 AGGTCACCAACTGTCAACAAAG 58.983 45.455 0.00 0.00 0.00 2.77
2710 3055 2.604686 AGCTGTCCTGGGAAGCGA 60.605 61.111 13.51 0.00 41.88 4.93
3125 3470 4.731612 CTGCTCGCTCACACGCCT 62.732 66.667 0.00 0.00 0.00 5.52
3480 3828 3.261580 CATCGAGTGAACATGCCTACAA 58.738 45.455 0.00 0.00 0.00 2.41
3629 3977 5.835280 ACTGAAATTTCAATCCAGGTGAACT 59.165 36.000 20.82 0.00 36.64 3.01
3630 3978 5.922544 CACTGAAATTTCAATCCAGGTGAAC 59.077 40.000 22.15 0.00 36.64 3.18
3635 3983 7.175641 AGAGTAACACTGAAATTTCAATCCAGG 59.824 37.037 20.82 11.07 36.64 4.45
3656 4004 2.712709 AGTTCTGCAGCGAGTAGAGTA 58.287 47.619 9.47 0.00 40.20 2.59
3663 4011 3.181516 GGATTTACAAGTTCTGCAGCGAG 60.182 47.826 9.47 0.00 0.00 5.03
3673 4021 5.074115 TCACAAATCCGGGATTTACAAGTT 58.926 37.500 29.34 8.19 39.82 2.66
3679 4027 9.854668 TTATATTTCTCACAAATCCGGGATTTA 57.145 29.630 29.34 16.49 39.82 1.40
3683 4031 6.770785 CCTTTATATTTCTCACAAATCCGGGA 59.229 38.462 0.00 0.00 0.00 5.14
3704 4052 0.106918 TGCTTCCGTCACAACCCTTT 60.107 50.000 0.00 0.00 0.00 3.11
3709 4057 1.873591 ACAATCTGCTTCCGTCACAAC 59.126 47.619 0.00 0.00 0.00 3.32
3710 4058 2.254546 ACAATCTGCTTCCGTCACAA 57.745 45.000 0.00 0.00 0.00 3.33
3720 4070 4.679373 ATCGATGAACCTACAATCTGCT 57.321 40.909 0.00 0.00 0.00 4.24
3742 4092 9.699410 TCACCAATTCCATTAGAAACAAGATAT 57.301 29.630 0.00 0.00 38.21 1.63
3743 4093 9.699410 ATCACCAATTCCATTAGAAACAAGATA 57.301 29.630 0.00 0.00 38.21 1.98
3744 4094 8.599624 ATCACCAATTCCATTAGAAACAAGAT 57.400 30.769 0.00 0.00 38.21 2.40
3745 4095 8.306038 CAATCACCAATTCCATTAGAAACAAGA 58.694 33.333 0.00 0.00 38.21 3.02
3746 4096 7.063780 GCAATCACCAATTCCATTAGAAACAAG 59.936 37.037 0.00 0.00 38.21 3.16
3747 4097 6.873076 GCAATCACCAATTCCATTAGAAACAA 59.127 34.615 0.00 0.00 38.21 2.83
3748 4098 6.397272 GCAATCACCAATTCCATTAGAAACA 58.603 36.000 0.00 0.00 38.21 2.83
3749 4099 5.516339 CGCAATCACCAATTCCATTAGAAAC 59.484 40.000 0.00 0.00 38.21 2.78
3750 4100 5.417266 TCGCAATCACCAATTCCATTAGAAA 59.583 36.000 0.00 0.00 38.21 2.52
3751 4101 4.946772 TCGCAATCACCAATTCCATTAGAA 59.053 37.500 0.00 0.00 39.32 2.10
3752 4102 4.522114 TCGCAATCACCAATTCCATTAGA 58.478 39.130 0.00 0.00 0.00 2.10
3753 4103 4.898829 TCGCAATCACCAATTCCATTAG 57.101 40.909 0.00 0.00 0.00 1.73
3759 4109 7.867403 ACCATTTATAATCGCAATCACCAATTC 59.133 33.333 0.00 0.00 0.00 2.17
3761 4111 7.288810 ACCATTTATAATCGCAATCACCAAT 57.711 32.000 0.00 0.00 0.00 3.16
3762 4112 6.707440 ACCATTTATAATCGCAATCACCAA 57.293 33.333 0.00 0.00 0.00 3.67
3785 4135 5.103601 TGAGGGTGTTAAAGAAAGGGGTTAA 60.104 40.000 0.00 0.00 0.00 2.01
3786 4136 4.416179 TGAGGGTGTTAAAGAAAGGGGTTA 59.584 41.667 0.00 0.00 0.00 2.85
3787 4137 3.205733 TGAGGGTGTTAAAGAAAGGGGTT 59.794 43.478 0.00 0.00 0.00 4.11
3788 4138 2.787035 TGAGGGTGTTAAAGAAAGGGGT 59.213 45.455 0.00 0.00 0.00 4.95
3807 4157 1.364269 AATTTACGAGGGTGGGGTGA 58.636 50.000 0.00 0.00 0.00 4.02
3824 4174 6.610075 AGCAATTTGTTGGTGAGGATTAAT 57.390 33.333 0.00 0.00 0.00 1.40
3898 4248 7.201266 CGAATTTCTTTGATTTCTAACCGCAAG 60.201 37.037 0.00 0.00 0.00 4.01
3899 4249 6.580791 CGAATTTCTTTGATTTCTAACCGCAA 59.419 34.615 0.00 0.00 0.00 4.85
3905 4255 6.468956 GCGCATCGAATTTCTTTGATTTCTAA 59.531 34.615 0.30 0.00 33.90 2.10
3924 4274 2.887568 CCTCCGTCACTGCGCATC 60.888 66.667 12.24 0.91 0.00 3.91
3930 4280 2.414994 TAGTACTCCCTCCGTCACTG 57.585 55.000 0.00 0.00 0.00 3.66
3936 4286 4.730949 TGTCAATTTAGTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
3939 4289 7.735326 ACTGTATGTCAATTTAGTACTCCCT 57.265 36.000 0.00 0.00 0.00 4.20
3971 4321 3.409856 CGGCCTCGGCTGTATTTG 58.590 61.111 8.62 0.00 42.19 2.32
4038 4388 3.119388 AGCTAAAATAGACACGCGGTACA 60.119 43.478 12.47 0.00 0.00 2.90
4063 4413 0.873312 CGAGGCGAGGATGTCACATG 60.873 60.000 0.00 0.00 0.00 3.21
4078 4428 4.861102 AACCCGAACCTAATATACGAGG 57.139 45.455 0.00 0.95 38.92 4.63
4088 4438 0.038343 GCACGTGTAACCCGAACCTA 60.038 55.000 18.38 0.00 0.00 3.08
4095 4445 3.967203 TGTAAAAAGCACGTGTAACCC 57.033 42.857 18.38 0.00 0.00 4.11
4131 4497 6.151648 AGGATATGTGTCAATGGTGAAAGTTG 59.848 38.462 0.00 0.00 34.87 3.16
4152 4518 9.160412 AGCTAAAATAGACACATTAGGTAGGAT 57.840 33.333 0.00 0.00 35.13 3.24
4181 4547 4.977963 GTCAATGGTGAAAGTTGACACATG 59.022 41.667 11.36 0.00 46.70 3.21
4182 4548 5.186996 GTCAATGGTGAAAGTTGACACAT 57.813 39.130 11.36 5.01 46.70 3.21
4183 4549 4.630894 GTCAATGGTGAAAGTTGACACA 57.369 40.909 11.36 3.40 46.70 3.72
4236 4602 4.959439 GAAAGGGCTTTTCTTCGGTACGG 61.959 52.174 14.17 0.00 46.42 4.02
4239 4605 3.495434 TGAAAGGGCTTTTCTTCGGTA 57.505 42.857 20.75 0.00 44.49 4.02
4242 4608 4.773323 AGATTGAAAGGGCTTTTCTTCG 57.227 40.909 20.75 0.00 44.49 3.79
4289 4655 2.301346 CAAGCAATCTACCACATCCCC 58.699 52.381 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.