Multiple sequence alignment - TraesCS1D01G258500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G258500 chr1D 100.000 2192 0 0 1 2192 351037674 351039865 0.000000e+00 4048
1 TraesCS1D01G258500 chr1D 97.002 467 5 3 1 462 351030647 351031109 0.000000e+00 776
2 TraesCS1D01G258500 chr2B 97.679 1637 36 2 463 2097 234540698 234539062 0.000000e+00 2811
3 TraesCS1D01G258500 chr2B 97.251 1637 43 2 463 2097 234501999 234500363 0.000000e+00 2772
4 TraesCS1D01G258500 chr2B 97.980 99 2 0 2094 2192 357490332 357490234 2.890000e-39 172
5 TraesCS1D01G258500 chr2B 97.980 99 2 0 2094 2192 449215286 449215188 2.890000e-39 172
6 TraesCS1D01G258500 chr2B 97.959 98 2 0 2094 2191 234537110 234537013 1.040000e-38 171
7 TraesCS1D01G258500 chr3A 97.618 1637 37 2 463 2097 495104298 495102662 0.000000e+00 2806
8 TraesCS1D01G258500 chr3A 97.980 99 2 0 2094 2192 495100712 495100614 2.890000e-39 172
9 TraesCS1D01G258500 chr7D 97.618 1637 36 3 463 2097 307146161 307144526 0.000000e+00 2804
10 TraesCS1D01G258500 chr7D 96.186 472 10 4 1 466 226596184 226595715 0.000000e+00 765
11 TraesCS1D01G258500 chr7D 96.368 468 11 3 1 462 383367851 383367384 0.000000e+00 765
12 TraesCS1D01G258500 chr7D 96.360 467 12 2 1 462 117842987 117843453 0.000000e+00 763
13 TraesCS1D01G258500 chr3B 97.448 1646 35 5 463 2104 92296272 92294630 0.000000e+00 2800
14 TraesCS1D01G258500 chr4D 97.383 1643 35 2 463 2097 123448524 123446882 0.000000e+00 2789
15 TraesCS1D01G258500 chr4D 97.198 464 10 3 1 462 344182087 344182549 0.000000e+00 782
16 TraesCS1D01G258500 chr1A 97.312 1637 41 3 463 2097 278521656 278523291 0.000000e+00 2776
17 TraesCS1D01G258500 chr1A 97.980 99 2 0 2094 2192 278525240 278525338 2.890000e-39 172
18 TraesCS1D01G258500 chrUn 97.251 1637 42 3 463 2097 217908130 217909765 0.000000e+00 2771
19 TraesCS1D01G258500 chrUn 97.980 99 2 0 2094 2192 413354526 413354624 2.890000e-39 172
20 TraesCS1D01G258500 chr1B 97.251 1637 42 3 463 2097 619194869 619193234 0.000000e+00 2771
21 TraesCS1D01G258500 chr3D 97.624 463 10 1 1 462 445856944 445857406 0.000000e+00 793
22 TraesCS1D01G258500 chr3D 97.959 98 2 0 2094 2191 501834333 501834236 1.040000e-38 171
23 TraesCS1D01G258500 chr5D 96.042 480 11 3 1 472 439756976 439757455 0.000000e+00 774
24 TraesCS1D01G258500 chr5D 96.375 469 9 6 1 462 52762616 52763083 0.000000e+00 765
25 TraesCS1D01G258500 chr6D 96.588 469 8 5 1 465 109262633 109262169 0.000000e+00 771
26 TraesCS1D01G258500 chr7A 97.980 99 2 0 2094 2192 563518050 563517952 2.890000e-39 172
27 TraesCS1D01G258500 chr4A 97.980 99 2 0 2094 2192 537552278 537552376 2.890000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G258500 chr1D 351037674 351039865 2191 False 4048 4048 100.000 1 2192 1 chr1D.!!$F2 2191
1 TraesCS1D01G258500 chr2B 234500363 234501999 1636 True 2772 2772 97.251 463 2097 1 chr2B.!!$R1 1634
2 TraesCS1D01G258500 chr2B 234537013 234540698 3685 True 1491 2811 97.819 463 2191 2 chr2B.!!$R4 1728
3 TraesCS1D01G258500 chr3A 495100614 495104298 3684 True 1489 2806 97.799 463 2192 2 chr3A.!!$R1 1729
4 TraesCS1D01G258500 chr7D 307144526 307146161 1635 True 2804 2804 97.618 463 2097 1 chr7D.!!$R2 1634
5 TraesCS1D01G258500 chr3B 92294630 92296272 1642 True 2800 2800 97.448 463 2104 1 chr3B.!!$R1 1641
6 TraesCS1D01G258500 chr4D 123446882 123448524 1642 True 2789 2789 97.383 463 2097 1 chr4D.!!$R1 1634
7 TraesCS1D01G258500 chr1A 278521656 278525338 3682 False 1474 2776 97.646 463 2192 2 chr1A.!!$F1 1729
8 TraesCS1D01G258500 chrUn 217908130 217909765 1635 False 2771 2771 97.251 463 2097 1 chrUn.!!$F1 1634
9 TraesCS1D01G258500 chr1B 619193234 619194869 1635 True 2771 2771 97.251 463 2097 1 chr1B.!!$R1 1634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.027979 CTCTCTCTCGCAGAAGCTCG 59.972 60.0 0.0 0.0 39.1 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1722 0.314935 CAACAAGATGCGCCAACCTT 59.685 50.0 4.18 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.123982 CCATCTCTTGGGGCTGGC 60.124 66.667 0.00 0.00 42.33 4.85
22 23 2.515523 CATCTCTTGGGGCTGGCG 60.516 66.667 0.00 0.00 0.00 5.69
23 24 4.496336 ATCTCTTGGGGCTGGCGC 62.496 66.667 11.46 11.46 0.00 6.53
47 48 1.923148 CCCCAGGGGCCTATATAAAGG 59.077 57.143 13.35 0.00 35.35 3.11
48 49 1.923148 CCCAGGGGCCTATATAAAGGG 59.077 57.143 0.84 0.00 37.11 3.95
49 50 1.923148 CCAGGGGCCTATATAAAGGGG 59.077 57.143 0.84 0.00 37.11 4.79
50 51 1.923148 CAGGGGCCTATATAAAGGGGG 59.077 57.143 0.84 0.00 37.11 5.40
65 66 3.897122 GGGGGAGGGCACAACACA 61.897 66.667 0.00 0.00 0.00 3.72
66 67 2.197324 GGGGAGGGCACAACACAA 59.803 61.111 0.00 0.00 0.00 3.33
67 68 2.200337 GGGGAGGGCACAACACAAC 61.200 63.158 0.00 0.00 0.00 3.32
68 69 1.454847 GGGAGGGCACAACACAACA 60.455 57.895 0.00 0.00 0.00 3.33
69 70 1.455383 GGGAGGGCACAACACAACAG 61.455 60.000 0.00 0.00 0.00 3.16
70 71 1.360192 GAGGGCACAACACAACAGC 59.640 57.895 0.00 0.00 0.00 4.40
71 72 2.075426 GAGGGCACAACACAACAGCC 62.075 60.000 0.00 0.00 44.48 4.85
72 73 2.127232 GGGCACAACACAACAGCCT 61.127 57.895 0.00 0.00 44.60 4.58
73 74 1.675720 GGGCACAACACAACAGCCTT 61.676 55.000 0.00 0.00 44.60 4.35
74 75 0.528249 GGCACAACACAACAGCCTTG 60.528 55.000 0.00 0.00 42.01 3.61
75 76 0.528249 GCACAACACAACAGCCTTGG 60.528 55.000 0.00 0.00 0.00 3.61
76 77 0.102844 CACAACACAACAGCCTTGGG 59.897 55.000 0.00 0.00 0.00 4.12
96 97 4.421554 CCTCCCTCCTCCCCTGCA 62.422 72.222 0.00 0.00 0.00 4.41
97 98 2.285668 CTCCCTCCTCCCCTGCAA 60.286 66.667 0.00 0.00 0.00 4.08
98 99 2.610859 TCCCTCCTCCCCTGCAAC 60.611 66.667 0.00 0.00 0.00 4.17
99 100 2.935481 CCCTCCTCCCCTGCAACA 60.935 66.667 0.00 0.00 0.00 3.33
100 101 2.352805 CCTCCTCCCCTGCAACAC 59.647 66.667 0.00 0.00 0.00 3.32
101 102 2.352805 CTCCTCCCCTGCAACACC 59.647 66.667 0.00 0.00 0.00 4.16
102 103 2.121963 TCCTCCCCTGCAACACCT 60.122 61.111 0.00 0.00 0.00 4.00
103 104 2.190488 CTCCTCCCCTGCAACACCTC 62.190 65.000 0.00 0.00 0.00 3.85
104 105 2.227036 CCTCCCCTGCAACACCTCT 61.227 63.158 0.00 0.00 0.00 3.69
105 106 1.298014 CTCCCCTGCAACACCTCTC 59.702 63.158 0.00 0.00 0.00 3.20
106 107 1.152030 TCCCCTGCAACACCTCTCT 60.152 57.895 0.00 0.00 0.00 3.10
107 108 1.194781 TCCCCTGCAACACCTCTCTC 61.195 60.000 0.00 0.00 0.00 3.20
108 109 1.197430 CCCCTGCAACACCTCTCTCT 61.197 60.000 0.00 0.00 0.00 3.10
109 110 0.248843 CCCTGCAACACCTCTCTCTC 59.751 60.000 0.00 0.00 0.00 3.20
110 111 1.265236 CCTGCAACACCTCTCTCTCT 58.735 55.000 0.00 0.00 0.00 3.10
111 112 1.204467 CCTGCAACACCTCTCTCTCTC 59.796 57.143 0.00 0.00 0.00 3.20
112 113 2.170166 CTGCAACACCTCTCTCTCTCT 58.830 52.381 0.00 0.00 0.00 3.10
113 114 2.164219 CTGCAACACCTCTCTCTCTCTC 59.836 54.545 0.00 0.00 0.00 3.20
114 115 2.224992 TGCAACACCTCTCTCTCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
115 116 2.423538 GCAACACCTCTCTCTCTCTCTC 59.576 54.545 0.00 0.00 0.00 3.20
116 117 3.873801 GCAACACCTCTCTCTCTCTCTCT 60.874 52.174 0.00 0.00 0.00 3.10
117 118 3.914426 ACACCTCTCTCTCTCTCTCTC 57.086 52.381 0.00 0.00 0.00 3.20
118 119 2.168521 ACACCTCTCTCTCTCTCTCTCG 59.831 54.545 0.00 0.00 0.00 4.04
119 120 1.139058 ACCTCTCTCTCTCTCTCTCGC 59.861 57.143 0.00 0.00 0.00 5.03
120 121 1.138859 CCTCTCTCTCTCTCTCTCGCA 59.861 57.143 0.00 0.00 0.00 5.10
121 122 2.477825 CTCTCTCTCTCTCTCTCGCAG 58.522 57.143 0.00 0.00 0.00 5.18
122 123 2.101415 CTCTCTCTCTCTCTCTCGCAGA 59.899 54.545 0.00 0.00 0.00 4.26
123 124 2.499693 TCTCTCTCTCTCTCTCGCAGAA 59.500 50.000 0.00 0.00 34.09 3.02
124 125 2.868583 CTCTCTCTCTCTCTCGCAGAAG 59.131 54.545 0.00 0.00 34.09 2.85
125 126 1.331756 CTCTCTCTCTCTCGCAGAAGC 59.668 57.143 0.00 0.00 34.09 3.86
126 127 1.065491 TCTCTCTCTCTCGCAGAAGCT 60.065 52.381 0.00 0.00 39.10 3.74
127 128 1.331756 CTCTCTCTCTCGCAGAAGCTC 59.668 57.143 0.00 0.00 39.10 4.09
128 129 0.027979 CTCTCTCTCGCAGAAGCTCG 59.972 60.000 0.00 0.00 39.10 5.03
129 130 1.063972 CTCTCTCGCAGAAGCTCGG 59.936 63.158 0.00 0.00 39.10 4.63
130 131 2.581953 CTCTCGCAGAAGCTCGGC 60.582 66.667 0.00 0.00 39.10 5.54
147 148 4.208686 CGTAGCCCTGCGGAGACC 62.209 72.222 5.10 0.00 35.07 3.85
148 149 3.851128 GTAGCCCTGCGGAGACCC 61.851 72.222 5.10 0.00 0.00 4.46
158 159 3.950232 GGAGACCCGCTACATCCA 58.050 61.111 0.00 0.00 0.00 3.41
159 160 1.442148 GGAGACCCGCTACATCCAC 59.558 63.158 0.00 0.00 0.00 4.02
160 161 1.442148 GAGACCCGCTACATCCACC 59.558 63.158 0.00 0.00 0.00 4.61
161 162 1.305802 AGACCCGCTACATCCACCA 60.306 57.895 0.00 0.00 0.00 4.17
162 163 1.153429 GACCCGCTACATCCACCAC 60.153 63.158 0.00 0.00 0.00 4.16
163 164 2.189521 CCCGCTACATCCACCACC 59.810 66.667 0.00 0.00 0.00 4.61
164 165 2.665089 CCCGCTACATCCACCACCA 61.665 63.158 0.00 0.00 0.00 4.17
165 166 1.449601 CCGCTACATCCACCACCAC 60.450 63.158 0.00 0.00 0.00 4.16
166 167 1.809619 CGCTACATCCACCACCACG 60.810 63.158 0.00 0.00 0.00 4.94
167 168 2.106683 GCTACATCCACCACCACGC 61.107 63.158 0.00 0.00 0.00 5.34
168 169 1.449601 CTACATCCACCACCACGCC 60.450 63.158 0.00 0.00 0.00 5.68
169 170 3.303761 TACATCCACCACCACGCCG 62.304 63.158 0.00 0.00 0.00 6.46
170 171 4.697756 CATCCACCACCACGCCGT 62.698 66.667 0.00 0.00 0.00 5.68
171 172 4.388499 ATCCACCACCACGCCGTC 62.388 66.667 0.00 0.00 0.00 4.79
184 185 2.887568 CCGTCGTGCTGCTGGATC 60.888 66.667 0.00 0.00 0.00 3.36
185 186 2.182791 CGTCGTGCTGCTGGATCT 59.817 61.111 0.00 0.00 0.00 2.75
186 187 1.875813 CGTCGTGCTGCTGGATCTC 60.876 63.158 0.00 0.00 0.00 2.75
187 188 1.520342 GTCGTGCTGCTGGATCTCC 60.520 63.158 0.00 0.00 0.00 3.71
188 189 1.984026 TCGTGCTGCTGGATCTCCA 60.984 57.895 0.00 0.00 45.30 3.86
189 190 1.145598 CGTGCTGCTGGATCTCCAT 59.854 57.895 0.00 0.00 46.46 3.41
190 191 0.879400 CGTGCTGCTGGATCTCCATC 60.879 60.000 0.00 0.00 46.46 3.51
191 192 0.179702 GTGCTGCTGGATCTCCATCA 59.820 55.000 0.00 0.85 46.46 3.07
192 193 0.913924 TGCTGCTGGATCTCCATCAA 59.086 50.000 0.00 0.00 46.46 2.57
193 194 1.307097 GCTGCTGGATCTCCATCAAC 58.693 55.000 0.00 0.00 46.46 3.18
194 195 1.964552 CTGCTGGATCTCCATCAACC 58.035 55.000 0.00 0.00 46.46 3.77
195 196 1.489649 CTGCTGGATCTCCATCAACCT 59.510 52.381 0.00 0.00 46.46 3.50
196 197 1.487976 TGCTGGATCTCCATCAACCTC 59.512 52.381 0.00 0.00 46.46 3.85
197 198 1.767681 GCTGGATCTCCATCAACCTCT 59.232 52.381 0.00 0.00 46.46 3.69
198 199 2.224257 GCTGGATCTCCATCAACCTCTC 60.224 54.545 0.00 0.00 46.46 3.20
199 200 2.368221 CTGGATCTCCATCAACCTCTCC 59.632 54.545 0.00 0.00 46.46 3.71
200 201 2.022625 TGGATCTCCATCAACCTCTCCT 60.023 50.000 0.00 0.00 42.01 3.69
201 202 3.044894 GGATCTCCATCAACCTCTCCTT 58.955 50.000 0.00 0.00 35.64 3.36
202 203 3.457749 GGATCTCCATCAACCTCTCCTTT 59.542 47.826 0.00 0.00 35.64 3.11
203 204 4.444164 GGATCTCCATCAACCTCTCCTTTC 60.444 50.000 0.00 0.00 35.64 2.62
204 205 2.840651 TCTCCATCAACCTCTCCTTTCC 59.159 50.000 0.00 0.00 0.00 3.13
205 206 1.916181 TCCATCAACCTCTCCTTTCCC 59.084 52.381 0.00 0.00 0.00 3.97
206 207 1.064389 CCATCAACCTCTCCTTTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
207 208 1.918957 CATCAACCTCTCCTTTCCCCT 59.081 52.381 0.00 0.00 0.00 4.79
208 209 2.133858 TCAACCTCTCCTTTCCCCTT 57.866 50.000 0.00 0.00 0.00 3.95
209 210 1.705186 TCAACCTCTCCTTTCCCCTTG 59.295 52.381 0.00 0.00 0.00 3.61
210 211 0.405973 AACCTCTCCTTTCCCCTTGC 59.594 55.000 0.00 0.00 0.00 4.01
211 212 0.476611 ACCTCTCCTTTCCCCTTGCT 60.477 55.000 0.00 0.00 0.00 3.91
212 213 0.034670 CCTCTCCTTTCCCCTTGCTG 60.035 60.000 0.00 0.00 0.00 4.41
213 214 0.034670 CTCTCCTTTCCCCTTGCTGG 60.035 60.000 0.00 0.00 0.00 4.85
214 215 0.475632 TCTCCTTTCCCCTTGCTGGA 60.476 55.000 0.00 0.00 38.35 3.86
215 216 0.627986 CTCCTTTCCCCTTGCTGGAT 59.372 55.000 0.00 0.00 38.35 3.41
216 217 0.625849 TCCTTTCCCCTTGCTGGATC 59.374 55.000 0.00 0.00 38.35 3.36
217 218 0.332632 CCTTTCCCCTTGCTGGATCA 59.667 55.000 0.00 0.00 38.35 2.92
218 219 1.272648 CCTTTCCCCTTGCTGGATCAA 60.273 52.381 0.00 0.00 38.35 2.57
219 220 2.097825 CTTTCCCCTTGCTGGATCAAG 58.902 52.381 0.00 0.00 42.23 3.02
220 221 1.371467 TTCCCCTTGCTGGATCAAGA 58.629 50.000 0.00 0.00 44.61 3.02
221 222 1.371467 TCCCCTTGCTGGATCAAGAA 58.629 50.000 0.00 0.00 44.61 2.52
222 223 1.283029 TCCCCTTGCTGGATCAAGAAG 59.717 52.381 0.00 2.15 44.61 2.85
223 224 1.684248 CCCCTTGCTGGATCAAGAAGG 60.684 57.143 16.02 16.02 44.61 3.46
224 225 1.283029 CCCTTGCTGGATCAAGAAGGA 59.717 52.381 21.16 3.00 44.61 3.36
225 226 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
226 227 2.641305 CTTGCTGGATCAAGAAGGAGG 58.359 52.381 0.00 0.00 44.61 4.30
227 228 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
228 229 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
229 230 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
230 231 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
231 232 2.100584 CTGGATCAAGAAGGAGGAGACG 59.899 54.545 0.00 0.00 0.00 4.18
232 233 2.104170 GGATCAAGAAGGAGGAGACGT 58.896 52.381 0.00 0.00 0.00 4.34
233 234 2.100087 GGATCAAGAAGGAGGAGACGTC 59.900 54.545 7.70 7.70 0.00 4.34
234 235 1.166129 TCAAGAAGGAGGAGACGTCG 58.834 55.000 10.46 0.00 0.00 5.12
235 236 0.456995 CAAGAAGGAGGAGACGTCGC 60.457 60.000 11.19 11.19 0.00 5.19
236 237 0.609681 AAGAAGGAGGAGACGTCGCT 60.610 55.000 18.88 5.17 0.00 4.93
237 238 1.137825 GAAGGAGGAGACGTCGCTG 59.862 63.158 18.88 0.00 0.00 5.18
238 239 2.875684 GAAGGAGGAGACGTCGCTGC 62.876 65.000 18.88 10.73 0.00 5.25
239 240 3.749064 GGAGGAGACGTCGCTGCA 61.749 66.667 18.88 0.00 0.00 4.41
240 241 2.505118 GAGGAGACGTCGCTGCAC 60.505 66.667 18.88 2.25 0.00 4.57
241 242 3.973267 GAGGAGACGTCGCTGCACC 62.973 68.421 18.88 11.82 0.00 5.01
243 244 4.702081 GAGACGTCGCTGCACCGT 62.702 66.667 12.41 12.51 37.56 4.83
244 245 3.318539 GAGACGTCGCTGCACCGTA 62.319 63.158 12.41 0.00 34.51 4.02
245 246 3.170585 GACGTCGCTGCACCGTAC 61.171 66.667 12.61 4.76 34.51 3.67
248 249 3.467119 GTCGCTGCACCGTACGTG 61.467 66.667 15.21 13.20 46.03 4.49
249 250 3.968568 TCGCTGCACCGTACGTGT 61.969 61.111 15.21 8.99 44.97 4.49
250 251 3.762992 CGCTGCACCGTACGTGTG 61.763 66.667 23.91 23.91 44.97 3.82
251 252 2.660552 GCTGCACCGTACGTGTGT 60.661 61.111 26.59 12.66 44.97 3.72
252 253 2.241880 GCTGCACCGTACGTGTGTT 61.242 57.895 26.59 2.71 44.97 3.32
253 254 1.562691 CTGCACCGTACGTGTGTTG 59.437 57.895 26.59 19.19 44.97 3.33
254 255 0.872451 CTGCACCGTACGTGTGTTGA 60.872 55.000 26.59 15.87 44.97 3.18
255 256 0.459759 TGCACCGTACGTGTGTTGAA 60.460 50.000 26.59 14.33 44.97 2.69
256 257 0.042794 GCACCGTACGTGTGTTGAAC 60.043 55.000 26.59 13.49 44.97 3.18
257 258 0.227735 CACCGTACGTGTGTTGAACG 59.772 55.000 21.45 0.00 46.32 3.95
263 264 1.931551 CGTGTGTTGAACGTGGAGG 59.068 57.895 0.00 0.00 36.31 4.30
264 265 0.808453 CGTGTGTTGAACGTGGAGGT 60.808 55.000 0.00 0.00 36.31 3.85
265 266 0.655733 GTGTGTTGAACGTGGAGGTG 59.344 55.000 0.00 0.00 0.00 4.00
266 267 1.092921 TGTGTTGAACGTGGAGGTGC 61.093 55.000 0.00 0.00 0.00 5.01
267 268 1.525077 TGTTGAACGTGGAGGTGCC 60.525 57.895 0.00 0.00 37.10 5.01
268 269 2.280524 TTGAACGTGGAGGTGCCG 60.281 61.111 0.00 0.00 40.66 5.69
269 270 3.096633 TTGAACGTGGAGGTGCCGT 62.097 57.895 0.00 0.00 40.66 5.68
270 271 2.280592 GAACGTGGAGGTGCCGTT 60.281 61.111 0.00 0.00 46.38 4.44
271 272 2.280592 AACGTGGAGGTGCCGTTC 60.281 61.111 0.00 0.00 40.46 3.95
272 273 4.657824 ACGTGGAGGTGCCGTTCG 62.658 66.667 0.00 0.00 40.66 3.95
273 274 4.657824 CGTGGAGGTGCCGTTCGT 62.658 66.667 0.00 0.00 40.66 3.85
274 275 2.280592 GTGGAGGTGCCGTTCGTT 60.281 61.111 0.00 0.00 40.66 3.85
275 276 2.029964 TGGAGGTGCCGTTCGTTC 59.970 61.111 0.00 0.00 40.66 3.95
276 277 3.110178 GGAGGTGCCGTTCGTTCG 61.110 66.667 0.00 0.00 0.00 3.95
283 284 3.467119 CCGTTCGTTCGGCACTCG 61.467 66.667 7.89 0.00 43.96 4.18
284 285 3.467119 CGTTCGTTCGGCACTCGG 61.467 66.667 0.00 0.00 39.77 4.63
285 286 2.355481 GTTCGTTCGGCACTCGGT 60.355 61.111 0.00 0.00 39.77 4.69
286 287 2.049802 TTCGTTCGGCACTCGGTC 60.050 61.111 0.00 0.00 39.77 4.79
287 288 2.847754 TTCGTTCGGCACTCGGTCA 61.848 57.895 0.00 0.00 39.77 4.02
288 289 2.126071 CGTTCGGCACTCGGTCAT 60.126 61.111 0.00 0.00 39.77 3.06
289 290 2.158959 CGTTCGGCACTCGGTCATC 61.159 63.158 0.00 0.00 39.77 2.92
290 291 2.158959 GTTCGGCACTCGGTCATCG 61.159 63.158 0.00 0.00 39.77 3.84
291 292 3.350909 TTCGGCACTCGGTCATCGG 62.351 63.158 0.00 0.00 39.77 4.18
292 293 4.129737 CGGCACTCGGTCATCGGT 62.130 66.667 0.00 0.00 39.77 4.69
293 294 2.509336 GGCACTCGGTCATCGGTG 60.509 66.667 0.00 0.00 40.48 4.94
294 295 2.571757 GCACTCGGTCATCGGTGA 59.428 61.111 0.00 0.00 40.18 4.02
295 296 1.141881 GCACTCGGTCATCGGTGAT 59.858 57.895 0.00 0.00 40.18 3.06
296 297 0.460284 GCACTCGGTCATCGGTGATT 60.460 55.000 0.00 0.00 40.18 2.57
297 298 2.007049 GCACTCGGTCATCGGTGATTT 61.007 52.381 0.00 0.00 40.18 2.17
298 299 1.660607 CACTCGGTCATCGGTGATTTG 59.339 52.381 0.00 0.00 40.18 2.32
299 300 1.290203 CTCGGTCATCGGTGATTTGG 58.710 55.000 0.00 0.00 39.77 3.28
300 301 0.899019 TCGGTCATCGGTGATTTGGA 59.101 50.000 0.00 0.00 39.77 3.53
301 302 1.484653 TCGGTCATCGGTGATTTGGAT 59.515 47.619 0.00 0.00 39.77 3.41
302 303 1.867233 CGGTCATCGGTGATTTGGATC 59.133 52.381 0.00 0.00 36.60 3.36
303 304 2.741553 CGGTCATCGGTGATTTGGATCA 60.742 50.000 0.00 0.00 36.60 2.92
310 311 3.064079 TGATTTGGATCACGGCGAG 57.936 52.632 16.62 5.72 37.37 5.03
311 312 0.249120 TGATTTGGATCACGGCGAGT 59.751 50.000 16.62 0.00 37.37 4.18
312 313 1.478916 TGATTTGGATCACGGCGAGTA 59.521 47.619 16.62 0.00 37.37 2.59
313 314 1.859080 GATTTGGATCACGGCGAGTAC 59.141 52.381 16.62 4.40 32.33 2.73
314 315 0.457166 TTTGGATCACGGCGAGTACG 60.457 55.000 16.62 0.00 42.93 3.67
315 316 1.307355 TTGGATCACGGCGAGTACGA 61.307 55.000 16.62 1.74 42.66 3.43
316 317 1.298190 GGATCACGGCGAGTACGAC 60.298 63.158 16.62 0.00 45.02 4.34
317 318 1.712977 GGATCACGGCGAGTACGACT 61.713 60.000 16.62 0.00 46.46 4.18
318 319 0.316032 GATCACGGCGAGTACGACTC 60.316 60.000 16.62 0.00 46.46 3.36
319 320 1.712977 ATCACGGCGAGTACGACTCC 61.713 60.000 16.62 0.00 46.46 3.85
320 321 3.494336 ACGGCGAGTACGACTCCG 61.494 66.667 16.62 17.85 46.46 4.63
340 341 3.998522 CGTAATCCACGTTCATTGGAAC 58.001 45.455 0.00 0.00 46.37 3.62
353 354 3.479269 GGAACGCTTCCGCTCGTG 61.479 66.667 1.80 0.00 40.59 4.35
354 355 2.430244 GAACGCTTCCGCTCGTGA 60.430 61.111 0.00 0.00 39.06 4.35
355 356 1.805945 GAACGCTTCCGCTCGTGAT 60.806 57.895 0.00 0.00 39.06 3.06
356 357 1.743855 GAACGCTTCCGCTCGTGATC 61.744 60.000 0.00 0.00 39.06 2.92
357 358 2.103143 CGCTTCCGCTCGTGATCT 59.897 61.111 0.00 0.00 0.00 2.75
358 359 1.355563 CGCTTCCGCTCGTGATCTA 59.644 57.895 0.00 0.00 0.00 1.98
359 360 0.930742 CGCTTCCGCTCGTGATCTAC 60.931 60.000 0.00 0.00 0.00 2.59
360 361 0.100682 GCTTCCGCTCGTGATCTACA 59.899 55.000 0.00 0.00 0.00 2.74
361 362 1.469251 GCTTCCGCTCGTGATCTACAA 60.469 52.381 0.00 0.00 0.00 2.41
362 363 2.455032 CTTCCGCTCGTGATCTACAAG 58.545 52.381 0.00 0.00 0.00 3.16
363 364 0.738975 TCCGCTCGTGATCTACAAGG 59.261 55.000 0.00 0.00 0.00 3.61
364 365 0.249073 CCGCTCGTGATCTACAAGGG 60.249 60.000 0.00 0.00 0.00 3.95
365 366 0.456221 CGCTCGTGATCTACAAGGGT 59.544 55.000 0.00 0.00 31.32 4.34
366 367 1.674441 CGCTCGTGATCTACAAGGGTA 59.326 52.381 0.00 0.00 31.32 3.69
367 368 2.293677 CGCTCGTGATCTACAAGGGTAT 59.706 50.000 0.00 0.00 31.32 2.73
368 369 3.643763 GCTCGTGATCTACAAGGGTATG 58.356 50.000 0.00 0.00 31.32 2.39
369 370 3.068307 GCTCGTGATCTACAAGGGTATGT 59.932 47.826 0.00 0.00 37.32 2.29
370 371 4.277672 GCTCGTGATCTACAAGGGTATGTA 59.722 45.833 0.00 0.00 34.75 2.29
379 380 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
380 381 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
381 382 2.330216 AGGGTATGTAGATGCACTCCC 58.670 52.381 0.00 0.00 35.94 4.30
382 383 2.090494 AGGGTATGTAGATGCACTCCCT 60.090 50.000 8.29 8.29 38.89 4.20
383 384 2.706190 GGGTATGTAGATGCACTCCCTT 59.294 50.000 0.00 0.00 34.22 3.95
384 385 3.244249 GGGTATGTAGATGCACTCCCTTC 60.244 52.174 0.00 0.00 34.22 3.46
385 386 3.244249 GGTATGTAGATGCACTCCCTTCC 60.244 52.174 0.00 0.00 0.00 3.46
386 387 1.204146 TGTAGATGCACTCCCTTCCC 58.796 55.000 0.00 0.00 0.00 3.97
387 388 0.470341 GTAGATGCACTCCCTTCCCC 59.530 60.000 0.00 0.00 0.00 4.81
388 389 0.343372 TAGATGCACTCCCTTCCCCT 59.657 55.000 0.00 0.00 0.00 4.79
389 390 0.985490 AGATGCACTCCCTTCCCCTC 60.985 60.000 0.00 0.00 0.00 4.30
390 391 2.317149 GATGCACTCCCTTCCCCTCG 62.317 65.000 0.00 0.00 0.00 4.63
391 392 3.003763 GCACTCCCTTCCCCTCGT 61.004 66.667 0.00 0.00 0.00 4.18
392 393 2.593956 GCACTCCCTTCCCCTCGTT 61.594 63.158 0.00 0.00 0.00 3.85
393 394 1.296715 CACTCCCTTCCCCTCGTTG 59.703 63.158 0.00 0.00 0.00 4.10
394 395 2.269241 CTCCCTTCCCCTCGTTGC 59.731 66.667 0.00 0.00 0.00 4.17
395 396 2.203938 TCCCTTCCCCTCGTTGCT 60.204 61.111 0.00 0.00 0.00 3.91
396 397 0.976073 CTCCCTTCCCCTCGTTGCTA 60.976 60.000 0.00 0.00 0.00 3.49
397 398 0.976073 TCCCTTCCCCTCGTTGCTAG 60.976 60.000 0.00 0.00 0.00 3.42
398 399 1.265454 CCCTTCCCCTCGTTGCTAGT 61.265 60.000 0.00 0.00 0.00 2.57
399 400 1.481871 CCTTCCCCTCGTTGCTAGTA 58.518 55.000 0.00 0.00 0.00 1.82
400 401 1.409427 CCTTCCCCTCGTTGCTAGTAG 59.591 57.143 0.00 0.00 0.00 2.57
401 402 2.376109 CTTCCCCTCGTTGCTAGTAGA 58.624 52.381 0.00 0.00 0.00 2.59
402 403 1.760192 TCCCCTCGTTGCTAGTAGAC 58.240 55.000 0.00 0.00 0.00 2.59
403 404 1.284198 TCCCCTCGTTGCTAGTAGACT 59.716 52.381 0.00 0.00 0.00 3.24
404 405 1.677052 CCCCTCGTTGCTAGTAGACTC 59.323 57.143 0.00 0.00 0.00 3.36
405 406 1.677052 CCCTCGTTGCTAGTAGACTCC 59.323 57.143 0.00 0.00 0.00 3.85
406 407 2.366533 CCTCGTTGCTAGTAGACTCCA 58.633 52.381 0.00 0.00 0.00 3.86
407 408 2.952978 CCTCGTTGCTAGTAGACTCCAT 59.047 50.000 0.00 0.00 0.00 3.41
408 409 4.135306 CCTCGTTGCTAGTAGACTCCATA 58.865 47.826 0.00 0.00 0.00 2.74
409 410 4.214545 CCTCGTTGCTAGTAGACTCCATAG 59.785 50.000 0.00 0.00 0.00 2.23
410 411 5.032327 TCGTTGCTAGTAGACTCCATAGA 57.968 43.478 0.00 0.00 0.00 1.98
411 412 5.622180 TCGTTGCTAGTAGACTCCATAGAT 58.378 41.667 0.00 0.00 0.00 1.98
412 413 5.470437 TCGTTGCTAGTAGACTCCATAGATG 59.530 44.000 0.00 0.00 0.00 2.90
413 414 5.465935 GTTGCTAGTAGACTCCATAGATGC 58.534 45.833 0.00 0.00 0.00 3.91
414 415 4.729868 TGCTAGTAGACTCCATAGATGCA 58.270 43.478 0.00 0.00 0.00 3.96
415 416 5.328565 TGCTAGTAGACTCCATAGATGCAT 58.671 41.667 0.00 0.00 0.00 3.96
416 417 5.417266 TGCTAGTAGACTCCATAGATGCATC 59.583 44.000 19.37 19.37 0.00 3.91
417 418 5.652014 GCTAGTAGACTCCATAGATGCATCT 59.348 44.000 30.85 30.85 40.86 2.90
418 419 6.152661 GCTAGTAGACTCCATAGATGCATCTT 59.847 42.308 32.94 18.09 38.32 2.40
419 420 6.343716 AGTAGACTCCATAGATGCATCTTG 57.656 41.667 32.94 26.28 38.32 3.02
420 421 4.620589 AGACTCCATAGATGCATCTTGG 57.379 45.455 32.94 32.05 38.32 3.61
421 422 3.972638 AGACTCCATAGATGCATCTTGGT 59.027 43.478 33.33 24.71 38.32 3.67
422 423 4.063689 GACTCCATAGATGCATCTTGGTG 58.936 47.826 33.33 32.47 38.32 4.17
423 424 3.713248 ACTCCATAGATGCATCTTGGTGA 59.287 43.478 35.34 26.11 38.32 4.02
424 425 4.164796 ACTCCATAGATGCATCTTGGTGAA 59.835 41.667 35.34 24.93 38.32 3.18
425 426 4.454678 TCCATAGATGCATCTTGGTGAAC 58.545 43.478 33.33 11.29 38.32 3.18
426 427 3.249320 CCATAGATGCATCTTGGTGAACG 59.751 47.826 32.94 7.74 38.32 3.95
427 428 2.479566 AGATGCATCTTGGTGAACGT 57.520 45.000 23.75 0.00 31.97 3.99
428 429 3.610040 AGATGCATCTTGGTGAACGTA 57.390 42.857 23.75 0.00 31.97 3.57
429 430 3.525537 AGATGCATCTTGGTGAACGTAG 58.474 45.455 23.75 0.00 31.97 3.51
430 431 2.093306 TGCATCTTGGTGAACGTAGG 57.907 50.000 0.00 0.00 0.00 3.18
431 432 1.621317 TGCATCTTGGTGAACGTAGGA 59.379 47.619 0.00 0.00 0.00 2.94
432 433 2.037902 TGCATCTTGGTGAACGTAGGAA 59.962 45.455 0.00 0.00 0.00 3.36
433 434 3.071479 GCATCTTGGTGAACGTAGGAAA 58.929 45.455 0.00 0.00 0.00 3.13
434 435 3.500680 GCATCTTGGTGAACGTAGGAAAA 59.499 43.478 0.00 0.00 0.00 2.29
435 436 4.156008 GCATCTTGGTGAACGTAGGAAAAT 59.844 41.667 0.00 0.00 0.00 1.82
436 437 5.335661 GCATCTTGGTGAACGTAGGAAAATT 60.336 40.000 0.00 0.00 0.00 1.82
437 438 6.677913 CATCTTGGTGAACGTAGGAAAATTT 58.322 36.000 0.00 0.00 0.00 1.82
438 439 6.702716 TCTTGGTGAACGTAGGAAAATTTT 57.297 33.333 2.28 2.28 0.00 1.82
439 440 7.804843 TCTTGGTGAACGTAGGAAAATTTTA 57.195 32.000 2.75 0.00 0.00 1.52
440 441 8.223177 TCTTGGTGAACGTAGGAAAATTTTAA 57.777 30.769 2.75 0.00 0.00 1.52
441 442 8.684520 TCTTGGTGAACGTAGGAAAATTTTAAA 58.315 29.630 2.75 0.00 0.00 1.52
442 443 9.471084 CTTGGTGAACGTAGGAAAATTTTAAAT 57.529 29.630 2.75 0.00 0.00 1.40
443 444 9.819267 TTGGTGAACGTAGGAAAATTTTAAATT 57.181 25.926 2.75 0.00 0.00 1.82
460 461 9.744468 ATTTTAAATTATGCTACGATTCCCAAC 57.256 29.630 0.00 0.00 0.00 3.77
461 462 7.867305 TTAAATTATGCTACGATTCCCAACA 57.133 32.000 0.00 0.00 0.00 3.33
489 490 6.698008 TGTCAGTGAAGATTTTGTGTGAAT 57.302 33.333 0.00 0.00 0.00 2.57
536 537 2.853542 TGAGCTGAGGGGGCACAA 60.854 61.111 0.00 0.00 0.00 3.33
626 627 1.067425 CGAATGGTGTTGGTCCTACGA 60.067 52.381 0.00 0.00 0.00 3.43
811 812 4.658901 TGGGTAGAGGAAGTCTCAAAAAGT 59.341 41.667 0.00 0.00 44.81 2.66
1033 1035 0.744771 GATCTGCCCAAGAACGACCC 60.745 60.000 0.00 0.00 38.79 4.46
1034 1036 1.488705 ATCTGCCCAAGAACGACCCA 61.489 55.000 0.00 0.00 38.79 4.51
1113 1115 6.725364 ACTCCTCAACCATCACAAGATAAAT 58.275 36.000 0.00 0.00 31.88 1.40
1392 1401 0.846015 CTGGGGTATGCTGGGATTCA 59.154 55.000 0.00 0.00 0.00 2.57
1603 1612 4.363138 TCCATCACGATCTCGAATGAAAG 58.637 43.478 6.60 0.00 43.02 2.62
1713 1722 2.508300 GGGTTAGGAGTAAAGCATCCCA 59.492 50.000 0.00 0.00 36.14 4.37
1728 1737 3.685435 CCAAGGTTGGCGCATCTT 58.315 55.556 10.83 0.00 42.21 2.40
1771 1780 3.631250 GGAACCCCAATATCTTTCTGCA 58.369 45.455 0.00 0.00 0.00 4.41
1793 1802 0.237498 GCAGTTTCTTTTCCCGTCCG 59.763 55.000 0.00 0.00 0.00 4.79
1865 1874 5.486775 TGACTTCTCCCTTCTTCATTGATCT 59.513 40.000 0.00 0.00 0.00 2.75
2103 4067 4.439153 CGTCCCATTCTTTAGTGTACGCTA 60.439 45.833 12.13 12.13 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.515523 CGCCAGCCCCAAGAGATG 60.516 66.667 0.00 0.00 0.00 2.90
6 7 4.496336 GCGCCAGCCCCAAGAGAT 62.496 66.667 0.00 0.00 37.42 2.75
28 29 1.923148 CCCTTTATATAGGCCCCTGGG 59.077 57.143 5.50 5.50 33.73 4.45
29 30 1.923148 CCCCTTTATATAGGCCCCTGG 59.077 57.143 0.00 0.00 33.73 4.45
30 31 1.923148 CCCCCTTTATATAGGCCCCTG 59.077 57.143 0.00 0.00 33.73 4.45
31 32 2.378308 CCCCCTTTATATAGGCCCCT 57.622 55.000 0.00 0.00 33.73 4.79
48 49 3.444818 TTGTGTTGTGCCCTCCCCC 62.445 63.158 0.00 0.00 0.00 5.40
49 50 2.197324 TTGTGTTGTGCCCTCCCC 59.803 61.111 0.00 0.00 0.00 4.81
50 51 1.454847 TGTTGTGTTGTGCCCTCCC 60.455 57.895 0.00 0.00 0.00 4.30
51 52 2.032981 CTGTTGTGTTGTGCCCTCC 58.967 57.895 0.00 0.00 0.00 4.30
52 53 1.360192 GCTGTTGTGTTGTGCCCTC 59.640 57.895 0.00 0.00 0.00 4.30
53 54 2.127232 GGCTGTTGTGTTGTGCCCT 61.127 57.895 0.00 0.00 37.81 5.19
54 55 1.675720 AAGGCTGTTGTGTTGTGCCC 61.676 55.000 0.00 0.00 44.19 5.36
55 56 0.528249 CAAGGCTGTTGTGTTGTGCC 60.528 55.000 0.00 0.00 43.52 5.01
56 57 0.528249 CCAAGGCTGTTGTGTTGTGC 60.528 55.000 0.00 0.00 0.00 4.57
57 58 0.102844 CCCAAGGCTGTTGTGTTGTG 59.897 55.000 0.00 0.00 0.00 3.33
58 59 1.675720 GCCCAAGGCTGTTGTGTTGT 61.676 55.000 0.00 0.00 46.69 3.32
59 60 1.067916 GCCCAAGGCTGTTGTGTTG 59.932 57.895 0.00 0.00 46.69 3.33
60 61 3.537388 GCCCAAGGCTGTTGTGTT 58.463 55.556 0.00 0.00 46.69 3.32
79 80 3.950861 TTGCAGGGGAGGAGGGAGG 62.951 68.421 0.00 0.00 0.00 4.30
80 81 2.285668 TTGCAGGGGAGGAGGGAG 60.286 66.667 0.00 0.00 0.00 4.30
81 82 2.610859 GTTGCAGGGGAGGAGGGA 60.611 66.667 0.00 0.00 0.00 4.20
82 83 2.935481 TGTTGCAGGGGAGGAGGG 60.935 66.667 0.00 0.00 0.00 4.30
83 84 2.352805 GTGTTGCAGGGGAGGAGG 59.647 66.667 0.00 0.00 0.00 4.30
84 85 2.190488 GAGGTGTTGCAGGGGAGGAG 62.190 65.000 0.00 0.00 0.00 3.69
85 86 2.121963 AGGTGTTGCAGGGGAGGA 60.122 61.111 0.00 0.00 0.00 3.71
86 87 2.190488 GAGAGGTGTTGCAGGGGAGG 62.190 65.000 0.00 0.00 0.00 4.30
87 88 1.197430 AGAGAGGTGTTGCAGGGGAG 61.197 60.000 0.00 0.00 0.00 4.30
88 89 1.152030 AGAGAGGTGTTGCAGGGGA 60.152 57.895 0.00 0.00 0.00 4.81
89 90 1.197430 AGAGAGAGGTGTTGCAGGGG 61.197 60.000 0.00 0.00 0.00 4.79
90 91 0.248843 GAGAGAGAGGTGTTGCAGGG 59.751 60.000 0.00 0.00 0.00 4.45
91 92 1.204467 GAGAGAGAGAGGTGTTGCAGG 59.796 57.143 0.00 0.00 0.00 4.85
92 93 2.164219 GAGAGAGAGAGAGGTGTTGCAG 59.836 54.545 0.00 0.00 0.00 4.41
93 94 2.166829 GAGAGAGAGAGAGGTGTTGCA 58.833 52.381 0.00 0.00 0.00 4.08
94 95 2.423538 GAGAGAGAGAGAGAGGTGTTGC 59.576 54.545 0.00 0.00 0.00 4.17
95 96 3.941483 GAGAGAGAGAGAGAGAGGTGTTG 59.059 52.174 0.00 0.00 0.00 3.33
96 97 3.369471 CGAGAGAGAGAGAGAGAGGTGTT 60.369 52.174 0.00 0.00 0.00 3.32
97 98 2.168521 CGAGAGAGAGAGAGAGAGGTGT 59.831 54.545 0.00 0.00 0.00 4.16
98 99 2.826428 CGAGAGAGAGAGAGAGAGGTG 58.174 57.143 0.00 0.00 0.00 4.00
99 100 1.139058 GCGAGAGAGAGAGAGAGAGGT 59.861 57.143 0.00 0.00 0.00 3.85
100 101 1.138859 TGCGAGAGAGAGAGAGAGAGG 59.861 57.143 0.00 0.00 0.00 3.69
101 102 2.101415 TCTGCGAGAGAGAGAGAGAGAG 59.899 54.545 0.00 0.00 0.00 3.20
102 103 2.107366 TCTGCGAGAGAGAGAGAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
103 104 2.602257 TCTGCGAGAGAGAGAGAGAG 57.398 55.000 0.00 0.00 0.00 3.20
104 105 2.905075 CTTCTGCGAGAGAGAGAGAGA 58.095 52.381 0.00 0.00 30.18 3.10
105 106 1.331756 GCTTCTGCGAGAGAGAGAGAG 59.668 57.143 0.00 0.00 30.18 3.20
106 107 1.065491 AGCTTCTGCGAGAGAGAGAGA 60.065 52.381 0.00 0.00 45.42 3.10
107 108 1.331756 GAGCTTCTGCGAGAGAGAGAG 59.668 57.143 0.00 0.00 45.42 3.20
108 109 1.378531 GAGCTTCTGCGAGAGAGAGA 58.621 55.000 0.00 0.00 45.42 3.10
109 110 0.027979 CGAGCTTCTGCGAGAGAGAG 59.972 60.000 0.00 0.00 45.42 3.20
110 111 1.372838 CCGAGCTTCTGCGAGAGAGA 61.373 60.000 0.00 0.00 45.42 3.10
111 112 1.063972 CCGAGCTTCTGCGAGAGAG 59.936 63.158 0.00 0.00 45.42 3.20
112 113 3.057547 GCCGAGCTTCTGCGAGAGA 62.058 63.158 0.00 0.00 45.42 3.10
113 114 2.581953 GCCGAGCTTCTGCGAGAG 60.582 66.667 0.00 0.00 45.42 3.20
118 119 3.258290 GCTACGCCGAGCTTCTGC 61.258 66.667 0.00 0.00 39.50 4.26
119 120 2.583593 GGCTACGCCGAGCTTCTG 60.584 66.667 8.11 0.00 42.43 3.02
141 142 1.442148 GTGGATGTAGCGGGTCTCC 59.558 63.158 0.00 0.00 0.00 3.71
142 143 1.327690 TGGTGGATGTAGCGGGTCTC 61.328 60.000 0.00 0.00 0.00 3.36
143 144 1.305802 TGGTGGATGTAGCGGGTCT 60.306 57.895 0.00 0.00 0.00 3.85
144 145 1.153429 GTGGTGGATGTAGCGGGTC 60.153 63.158 0.00 0.00 0.00 4.46
145 146 2.666098 GGTGGTGGATGTAGCGGGT 61.666 63.158 0.00 0.00 0.00 5.28
146 147 2.189521 GGTGGTGGATGTAGCGGG 59.810 66.667 0.00 0.00 0.00 6.13
147 148 1.449601 GTGGTGGTGGATGTAGCGG 60.450 63.158 0.00 0.00 0.00 5.52
148 149 1.809619 CGTGGTGGTGGATGTAGCG 60.810 63.158 0.00 0.00 0.00 4.26
149 150 2.106683 GCGTGGTGGTGGATGTAGC 61.107 63.158 0.00 0.00 0.00 3.58
150 151 1.449601 GGCGTGGTGGTGGATGTAG 60.450 63.158 0.00 0.00 0.00 2.74
151 152 2.666207 GGCGTGGTGGTGGATGTA 59.334 61.111 0.00 0.00 0.00 2.29
152 153 4.697756 CGGCGTGGTGGTGGATGT 62.698 66.667 0.00 0.00 0.00 3.06
153 154 4.697756 ACGGCGTGGTGGTGGATG 62.698 66.667 13.76 0.00 0.00 3.51
154 155 4.388499 GACGGCGTGGTGGTGGAT 62.388 66.667 21.19 0.00 0.00 3.41
167 168 2.887568 GATCCAGCAGCACGACGG 60.888 66.667 0.00 0.00 0.00 4.79
168 169 1.875813 GAGATCCAGCAGCACGACG 60.876 63.158 0.00 0.00 0.00 5.12
169 170 1.520342 GGAGATCCAGCAGCACGAC 60.520 63.158 0.00 0.00 35.64 4.34
170 171 1.984026 TGGAGATCCAGCAGCACGA 60.984 57.895 0.00 0.00 42.01 4.35
171 172 2.580815 TGGAGATCCAGCAGCACG 59.419 61.111 0.00 0.00 42.01 5.34
180 181 2.688477 AGGAGAGGTTGATGGAGATCC 58.312 52.381 0.00 0.00 0.00 3.36
181 182 4.444164 GGAAAGGAGAGGTTGATGGAGATC 60.444 50.000 0.00 0.00 0.00 2.75
182 183 3.457749 GGAAAGGAGAGGTTGATGGAGAT 59.542 47.826 0.00 0.00 0.00 2.75
183 184 2.840651 GGAAAGGAGAGGTTGATGGAGA 59.159 50.000 0.00 0.00 0.00 3.71
184 185 2.092699 GGGAAAGGAGAGGTTGATGGAG 60.093 54.545 0.00 0.00 0.00 3.86
185 186 1.916181 GGGAAAGGAGAGGTTGATGGA 59.084 52.381 0.00 0.00 0.00 3.41
186 187 1.064389 GGGGAAAGGAGAGGTTGATGG 60.064 57.143 0.00 0.00 0.00 3.51
187 188 1.918957 AGGGGAAAGGAGAGGTTGATG 59.081 52.381 0.00 0.00 0.00 3.07
188 189 2.310052 CAAGGGGAAAGGAGAGGTTGAT 59.690 50.000 0.00 0.00 0.00 2.57
189 190 1.705186 CAAGGGGAAAGGAGAGGTTGA 59.295 52.381 0.00 0.00 0.00 3.18
190 191 1.888391 GCAAGGGGAAAGGAGAGGTTG 60.888 57.143 0.00 0.00 0.00 3.77
191 192 0.405973 GCAAGGGGAAAGGAGAGGTT 59.594 55.000 0.00 0.00 0.00 3.50
192 193 0.476611 AGCAAGGGGAAAGGAGAGGT 60.477 55.000 0.00 0.00 0.00 3.85
193 194 0.034670 CAGCAAGGGGAAAGGAGAGG 60.035 60.000 0.00 0.00 0.00 3.69
194 195 0.034670 CCAGCAAGGGGAAAGGAGAG 60.035 60.000 0.00 0.00 0.00 3.20
195 196 0.475632 TCCAGCAAGGGGAAAGGAGA 60.476 55.000 0.00 0.00 38.24 3.71
196 197 0.627986 ATCCAGCAAGGGGAAAGGAG 59.372 55.000 0.00 0.00 38.09 3.69
197 198 0.625849 GATCCAGCAAGGGGAAAGGA 59.374 55.000 0.00 0.00 38.09 3.36
198 199 0.332632 TGATCCAGCAAGGGGAAAGG 59.667 55.000 0.00 0.00 38.09 3.11
199 200 2.097825 CTTGATCCAGCAAGGGGAAAG 58.902 52.381 0.00 0.00 41.15 2.62
200 201 1.710244 TCTTGATCCAGCAAGGGGAAA 59.290 47.619 4.79 0.00 44.14 3.13
201 202 1.371467 TCTTGATCCAGCAAGGGGAA 58.629 50.000 4.79 0.00 44.14 3.97
202 203 1.283029 CTTCTTGATCCAGCAAGGGGA 59.717 52.381 4.79 0.00 44.14 4.81
203 204 1.684248 CCTTCTTGATCCAGCAAGGGG 60.684 57.143 4.79 4.42 44.14 4.79
204 205 1.283029 TCCTTCTTGATCCAGCAAGGG 59.717 52.381 17.39 0.00 44.14 3.95
205 206 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
206 207 2.238144 TCCTCCTTCTTGATCCAGCAAG 59.762 50.000 0.00 0.00 45.10 4.01
207 208 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
208 209 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
209 210 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
210 211 2.100584 CGTCTCCTCCTTCTTGATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
211 212 2.103373 CGTCTCCTCCTTCTTGATCCA 58.897 52.381 0.00 0.00 0.00 3.41
212 213 2.100087 GACGTCTCCTCCTTCTTGATCC 59.900 54.545 8.70 0.00 0.00 3.36
213 214 2.223386 CGACGTCTCCTCCTTCTTGATC 60.223 54.545 14.70 0.00 0.00 2.92
214 215 1.746220 CGACGTCTCCTCCTTCTTGAT 59.254 52.381 14.70 0.00 0.00 2.57
215 216 1.166129 CGACGTCTCCTCCTTCTTGA 58.834 55.000 14.70 0.00 0.00 3.02
216 217 0.456995 GCGACGTCTCCTCCTTCTTG 60.457 60.000 14.70 0.00 0.00 3.02
217 218 0.609681 AGCGACGTCTCCTCCTTCTT 60.610 55.000 14.70 0.00 0.00 2.52
218 219 1.001887 AGCGACGTCTCCTCCTTCT 60.002 57.895 14.70 0.00 0.00 2.85
219 220 1.137825 CAGCGACGTCTCCTCCTTC 59.862 63.158 14.70 0.00 0.00 3.46
220 221 2.995872 GCAGCGACGTCTCCTCCTT 61.996 63.158 14.70 0.00 0.00 3.36
221 222 3.444805 GCAGCGACGTCTCCTCCT 61.445 66.667 14.70 0.00 0.00 3.69
222 223 3.749064 TGCAGCGACGTCTCCTCC 61.749 66.667 14.70 0.44 0.00 4.30
223 224 2.505118 GTGCAGCGACGTCTCCTC 60.505 66.667 14.70 0.83 0.00 3.71
224 225 4.057428 GGTGCAGCGACGTCTCCT 62.057 66.667 14.70 6.88 0.00 3.69
226 227 3.318539 TACGGTGCAGCGACGTCTC 62.319 63.158 41.29 5.55 41.53 3.36
227 228 3.359523 TACGGTGCAGCGACGTCT 61.360 61.111 41.29 22.82 41.53 4.18
228 229 3.170585 GTACGGTGCAGCGACGTC 61.171 66.667 41.29 23.41 41.53 4.34
231 232 3.467119 CACGTACGGTGCAGCGAC 61.467 66.667 41.29 30.32 40.33 5.19
239 240 2.580661 CGTTCAACACACGTACGGT 58.419 52.632 21.06 11.73 32.80 4.83
245 246 0.808453 ACCTCCACGTTCAACACACG 60.808 55.000 0.00 0.00 43.52 4.49
246 247 0.655733 CACCTCCACGTTCAACACAC 59.344 55.000 0.00 0.00 0.00 3.82
247 248 1.092921 GCACCTCCACGTTCAACACA 61.093 55.000 0.00 0.00 0.00 3.72
248 249 1.647084 GCACCTCCACGTTCAACAC 59.353 57.895 0.00 0.00 0.00 3.32
249 250 1.525077 GGCACCTCCACGTTCAACA 60.525 57.895 0.00 0.00 34.01 3.33
250 251 2.604174 CGGCACCTCCACGTTCAAC 61.604 63.158 0.00 0.00 34.01 3.18
251 252 2.280524 CGGCACCTCCACGTTCAA 60.281 61.111 0.00 0.00 34.01 2.69
252 253 3.096633 AACGGCACCTCCACGTTCA 62.097 57.895 0.00 0.00 46.50 3.18
253 254 2.280592 AACGGCACCTCCACGTTC 60.281 61.111 0.00 0.00 46.50 3.95
255 256 4.657824 CGAACGGCACCTCCACGT 62.658 66.667 0.00 0.00 43.43 4.49
256 257 4.657824 ACGAACGGCACCTCCACG 62.658 66.667 0.00 0.00 34.01 4.94
257 258 2.280592 AACGAACGGCACCTCCAC 60.281 61.111 0.00 0.00 34.01 4.02
258 259 2.029964 GAACGAACGGCACCTCCA 59.970 61.111 0.00 0.00 34.01 3.86
259 260 3.110178 CGAACGAACGGCACCTCC 61.110 66.667 0.00 0.00 0.00 4.30
260 261 3.110178 CCGAACGAACGGCACCTC 61.110 66.667 11.22 0.00 46.20 3.85
267 268 3.467119 CCGAGTGCCGAACGAACG 61.467 66.667 0.00 0.00 41.76 3.95
268 269 2.355481 ACCGAGTGCCGAACGAAC 60.355 61.111 0.00 0.00 41.76 3.95
269 270 2.049802 GACCGAGTGCCGAACGAA 60.050 61.111 0.00 0.00 41.76 3.85
270 271 2.537792 GATGACCGAGTGCCGAACGA 62.538 60.000 0.00 0.00 41.76 3.85
271 272 2.126071 ATGACCGAGTGCCGAACG 60.126 61.111 0.00 0.00 41.76 3.95
272 273 2.158959 CGATGACCGAGTGCCGAAC 61.159 63.158 0.00 0.00 41.76 3.95
273 274 2.180769 CGATGACCGAGTGCCGAA 59.819 61.111 0.00 0.00 41.76 4.30
274 275 3.822192 CCGATGACCGAGTGCCGA 61.822 66.667 0.00 0.00 41.76 5.54
275 276 4.129737 ACCGATGACCGAGTGCCG 62.130 66.667 0.00 0.00 41.76 5.69
276 277 2.298158 ATCACCGATGACCGAGTGCC 62.298 60.000 0.00 0.00 41.76 5.01
277 278 0.460284 AATCACCGATGACCGAGTGC 60.460 55.000 0.00 0.00 41.76 4.40
278 279 1.660607 CAAATCACCGATGACCGAGTG 59.339 52.381 0.00 0.00 41.76 3.51
279 280 1.405526 CCAAATCACCGATGACCGAGT 60.406 52.381 0.00 0.00 41.76 4.18
280 281 1.134818 TCCAAATCACCGATGACCGAG 60.135 52.381 0.00 0.00 41.76 4.63
281 282 0.899019 TCCAAATCACCGATGACCGA 59.101 50.000 0.00 0.00 41.76 4.69
282 283 1.867233 GATCCAAATCACCGATGACCG 59.133 52.381 0.00 0.00 37.79 4.79
283 284 2.917933 TGATCCAAATCACCGATGACC 58.082 47.619 0.00 0.00 37.79 4.02
292 293 0.249120 ACTCGCCGTGATCCAAATCA 59.751 50.000 0.00 0.00 39.63 2.57
293 294 1.859080 GTACTCGCCGTGATCCAAATC 59.141 52.381 0.00 0.00 0.00 2.17
294 295 1.801395 CGTACTCGCCGTGATCCAAAT 60.801 52.381 0.00 0.00 0.00 2.32
295 296 0.457166 CGTACTCGCCGTGATCCAAA 60.457 55.000 0.00 0.00 0.00 3.28
296 297 1.138036 CGTACTCGCCGTGATCCAA 59.862 57.895 0.00 0.00 0.00 3.53
297 298 1.746239 TCGTACTCGCCGTGATCCA 60.746 57.895 0.00 0.00 36.96 3.41
298 299 1.298190 GTCGTACTCGCCGTGATCC 60.298 63.158 0.00 0.00 36.96 3.36
299 300 0.316032 GAGTCGTACTCGCCGTGATC 60.316 60.000 0.00 0.00 35.28 2.92
300 301 1.712977 GGAGTCGTACTCGCCGTGAT 61.713 60.000 8.33 0.00 45.96 3.06
301 302 2.393768 GGAGTCGTACTCGCCGTGA 61.394 63.158 8.33 0.00 45.96 4.35
302 303 2.099831 GGAGTCGTACTCGCCGTG 59.900 66.667 8.33 0.00 45.96 4.94
303 304 3.494336 CGGAGTCGTACTCGCCGT 61.494 66.667 16.94 0.00 45.96 5.68
342 343 2.455032 CTTGTAGATCACGAGCGGAAG 58.545 52.381 0.00 0.00 31.77 3.46
343 344 1.134367 CCTTGTAGATCACGAGCGGAA 59.866 52.381 0.00 0.00 37.34 4.30
344 345 0.738975 CCTTGTAGATCACGAGCGGA 59.261 55.000 0.00 0.00 37.34 5.54
345 346 0.249073 CCCTTGTAGATCACGAGCGG 60.249 60.000 0.00 1.66 37.34 5.52
346 347 0.456221 ACCCTTGTAGATCACGAGCG 59.544 55.000 0.00 0.00 37.34 5.03
347 348 3.068307 ACATACCCTTGTAGATCACGAGC 59.932 47.826 0.00 0.00 37.34 5.03
348 349 4.920640 ACATACCCTTGTAGATCACGAG 57.079 45.455 0.00 0.78 38.28 4.18
356 357 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
357 358 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
358 359 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
359 360 3.495100 GGGAGTGCATCTACATACCCTTG 60.495 52.174 0.00 0.00 35.93 3.61
360 361 2.706190 GGGAGTGCATCTACATACCCTT 59.294 50.000 0.00 0.00 35.93 3.95
361 362 2.090494 AGGGAGTGCATCTACATACCCT 60.090 50.000 0.00 0.00 40.68 4.34
362 363 2.330216 AGGGAGTGCATCTACATACCC 58.670 52.381 0.00 0.00 37.75 3.69
363 364 3.244249 GGAAGGGAGTGCATCTACATACC 60.244 52.174 0.00 0.00 0.00 2.73
364 365 3.244249 GGGAAGGGAGTGCATCTACATAC 60.244 52.174 0.00 0.00 0.00 2.39
365 366 2.972713 GGGAAGGGAGTGCATCTACATA 59.027 50.000 0.00 0.00 0.00 2.29
366 367 1.771255 GGGAAGGGAGTGCATCTACAT 59.229 52.381 0.00 0.00 0.00 2.29
367 368 1.204146 GGGAAGGGAGTGCATCTACA 58.796 55.000 0.00 0.00 0.00 2.74
368 369 0.470341 GGGGAAGGGAGTGCATCTAC 59.530 60.000 0.00 0.00 0.00 2.59
369 370 0.343372 AGGGGAAGGGAGTGCATCTA 59.657 55.000 0.00 0.00 0.00 1.98
370 371 0.985490 GAGGGGAAGGGAGTGCATCT 60.985 60.000 0.00 0.00 0.00 2.90
371 372 1.529309 GAGGGGAAGGGAGTGCATC 59.471 63.158 0.00 0.00 0.00 3.91
372 373 2.370445 CGAGGGGAAGGGAGTGCAT 61.370 63.158 0.00 0.00 0.00 3.96
373 374 3.003173 CGAGGGGAAGGGAGTGCA 61.003 66.667 0.00 0.00 0.00 4.57
374 375 2.593956 AACGAGGGGAAGGGAGTGC 61.594 63.158 0.00 0.00 0.00 4.40
375 376 1.296715 CAACGAGGGGAAGGGAGTG 59.703 63.158 0.00 0.00 0.00 3.51
376 377 2.593956 GCAACGAGGGGAAGGGAGT 61.594 63.158 0.00 0.00 0.00 3.85
377 378 0.976073 TAGCAACGAGGGGAAGGGAG 60.976 60.000 0.00 0.00 0.00 4.30
378 379 0.976073 CTAGCAACGAGGGGAAGGGA 60.976 60.000 0.00 0.00 0.00 4.20
379 380 1.265454 ACTAGCAACGAGGGGAAGGG 61.265 60.000 0.00 0.00 0.00 3.95
380 381 1.409427 CTACTAGCAACGAGGGGAAGG 59.591 57.143 0.00 0.00 0.00 3.46
381 382 2.099427 GTCTACTAGCAACGAGGGGAAG 59.901 54.545 0.00 0.00 0.00 3.46
382 383 2.097825 GTCTACTAGCAACGAGGGGAA 58.902 52.381 0.00 0.00 0.00 3.97
383 384 1.284198 AGTCTACTAGCAACGAGGGGA 59.716 52.381 0.00 0.00 0.00 4.81
384 385 1.677052 GAGTCTACTAGCAACGAGGGG 59.323 57.143 0.00 0.00 0.00 4.79
385 386 1.677052 GGAGTCTACTAGCAACGAGGG 59.323 57.143 0.00 0.00 0.00 4.30
386 387 2.366533 TGGAGTCTACTAGCAACGAGG 58.633 52.381 0.00 0.00 0.00 4.63
387 388 5.057819 TCTATGGAGTCTACTAGCAACGAG 58.942 45.833 0.00 0.00 0.00 4.18
388 389 5.032327 TCTATGGAGTCTACTAGCAACGA 57.968 43.478 0.00 0.00 0.00 3.85
389 390 5.694816 CATCTATGGAGTCTACTAGCAACG 58.305 45.833 0.00 0.00 0.00 4.10
390 391 5.010112 TGCATCTATGGAGTCTACTAGCAAC 59.990 44.000 0.00 0.00 0.00 4.17
391 392 5.140454 TGCATCTATGGAGTCTACTAGCAA 58.860 41.667 0.00 0.00 0.00 3.91
392 393 4.729868 TGCATCTATGGAGTCTACTAGCA 58.270 43.478 0.00 0.00 0.00 3.49
393 394 5.652014 AGATGCATCTATGGAGTCTACTAGC 59.348 44.000 27.73 0.00 34.85 3.42
394 395 7.362834 CCAAGATGCATCTATGGAGTCTACTAG 60.363 44.444 32.66 15.10 37.31 2.57
395 396 6.435591 CCAAGATGCATCTATGGAGTCTACTA 59.564 42.308 32.66 0.00 37.31 1.82
396 397 5.245751 CCAAGATGCATCTATGGAGTCTACT 59.754 44.000 32.66 14.71 37.31 2.57
397 398 5.011533 ACCAAGATGCATCTATGGAGTCTAC 59.988 44.000 37.45 12.81 37.92 2.59
398 399 5.011431 CACCAAGATGCATCTATGGAGTCTA 59.989 44.000 37.45 0.00 37.92 2.59
399 400 3.972638 ACCAAGATGCATCTATGGAGTCT 59.027 43.478 37.45 24.67 37.92 3.24
400 401 4.063689 CACCAAGATGCATCTATGGAGTC 58.936 47.826 37.45 14.82 37.92 3.36
401 402 3.713248 TCACCAAGATGCATCTATGGAGT 59.287 43.478 37.45 25.35 37.92 3.85
402 403 4.347360 TCACCAAGATGCATCTATGGAG 57.653 45.455 37.45 32.98 37.92 3.86
403 404 4.454678 GTTCACCAAGATGCATCTATGGA 58.545 43.478 37.45 26.43 37.92 3.41
404 405 3.249320 CGTTCACCAAGATGCATCTATGG 59.751 47.826 33.40 33.40 39.18 2.74
405 406 3.873361 ACGTTCACCAAGATGCATCTATG 59.127 43.478 28.92 24.39 35.76 2.23
406 407 4.142609 ACGTTCACCAAGATGCATCTAT 57.857 40.909 28.92 16.11 35.76 1.98
407 408 3.610040 ACGTTCACCAAGATGCATCTA 57.390 42.857 28.92 10.85 35.76 1.98
408 409 2.479566 ACGTTCACCAAGATGCATCT 57.520 45.000 23.75 23.75 39.22 2.90
409 410 2.609459 CCTACGTTCACCAAGATGCATC 59.391 50.000 19.37 19.37 0.00 3.91
410 411 2.236146 TCCTACGTTCACCAAGATGCAT 59.764 45.455 0.00 0.00 0.00 3.96
411 412 1.621317 TCCTACGTTCACCAAGATGCA 59.379 47.619 0.00 0.00 0.00 3.96
412 413 2.380084 TCCTACGTTCACCAAGATGC 57.620 50.000 0.00 0.00 0.00 3.91
413 414 5.880054 ATTTTCCTACGTTCACCAAGATG 57.120 39.130 0.00 0.00 0.00 2.90
414 415 6.894339 AAATTTTCCTACGTTCACCAAGAT 57.106 33.333 0.00 0.00 0.00 2.40
415 416 6.702716 AAAATTTTCCTACGTTCACCAAGA 57.297 33.333 0.00 0.00 0.00 3.02
416 417 8.859517 TTTAAAATTTTCCTACGTTCACCAAG 57.140 30.769 6.72 0.00 0.00 3.61
417 418 9.819267 AATTTAAAATTTTCCTACGTTCACCAA 57.181 25.926 6.72 0.00 0.00 3.67
434 435 9.744468 GTTGGGAATCGTAGCATAATTTAAAAT 57.256 29.630 0.00 0.00 0.00 1.82
435 436 8.740906 TGTTGGGAATCGTAGCATAATTTAAAA 58.259 29.630 0.00 0.00 0.00 1.52
436 437 8.282455 TGTTGGGAATCGTAGCATAATTTAAA 57.718 30.769 0.00 0.00 0.00 1.52
437 438 7.867305 TGTTGGGAATCGTAGCATAATTTAA 57.133 32.000 0.00 0.00 0.00 1.52
438 439 7.867305 TTGTTGGGAATCGTAGCATAATTTA 57.133 32.000 0.00 0.00 0.00 1.40
439 440 6.767524 TTGTTGGGAATCGTAGCATAATTT 57.232 33.333 0.00 0.00 0.00 1.82
440 441 6.321181 ACATTGTTGGGAATCGTAGCATAATT 59.679 34.615 0.00 0.00 0.00 1.40
441 442 5.827797 ACATTGTTGGGAATCGTAGCATAAT 59.172 36.000 0.00 0.00 0.00 1.28
442 443 5.189928 ACATTGTTGGGAATCGTAGCATAA 58.810 37.500 0.00 0.00 0.00 1.90
443 444 4.776349 ACATTGTTGGGAATCGTAGCATA 58.224 39.130 0.00 0.00 0.00 3.14
444 445 3.620488 ACATTGTTGGGAATCGTAGCAT 58.380 40.909 0.00 0.00 0.00 3.79
445 446 3.066291 ACATTGTTGGGAATCGTAGCA 57.934 42.857 0.00 0.00 0.00 3.49
446 447 3.190535 ACAACATTGTTGGGAATCGTAGC 59.809 43.478 28.10 0.00 38.47 3.58
447 448 4.454161 TGACAACATTGTTGGGAATCGTAG 59.546 41.667 28.10 4.87 42.43 3.51
448 449 4.390264 TGACAACATTGTTGGGAATCGTA 58.610 39.130 28.10 4.67 42.43 3.43
449 450 3.218453 TGACAACATTGTTGGGAATCGT 58.782 40.909 28.10 9.80 42.43 3.73
450 451 3.253188 ACTGACAACATTGTTGGGAATCG 59.747 43.478 28.10 16.19 42.43 3.34
451 452 4.278170 TCACTGACAACATTGTTGGGAATC 59.722 41.667 28.10 18.53 42.43 2.52
452 453 4.214310 TCACTGACAACATTGTTGGGAAT 58.786 39.130 28.10 11.45 42.43 3.01
453 454 3.625853 TCACTGACAACATTGTTGGGAA 58.374 40.909 28.10 14.89 42.43 3.97
454 455 3.289407 TCACTGACAACATTGTTGGGA 57.711 42.857 28.10 15.68 42.43 4.37
455 456 3.631686 TCTTCACTGACAACATTGTTGGG 59.368 43.478 28.10 20.23 42.43 4.12
456 457 4.898829 TCTTCACTGACAACATTGTTGG 57.101 40.909 28.10 15.88 42.43 3.77
457 458 7.276218 ACAAAATCTTCACTGACAACATTGTTG 59.724 33.333 24.40 24.40 42.43 3.33
458 459 7.276218 CACAAAATCTTCACTGACAACATTGTT 59.724 33.333 0.00 0.00 42.43 2.83
459 460 6.753279 CACAAAATCTTCACTGACAACATTGT 59.247 34.615 0.00 0.00 45.65 2.71
460 461 6.753279 ACACAAAATCTTCACTGACAACATTG 59.247 34.615 0.00 0.00 0.00 2.82
461 462 6.753279 CACACAAAATCTTCACTGACAACATT 59.247 34.615 0.00 0.00 0.00 2.71
489 490 0.962356 GGGTACGTCGTCTCCAAGGA 60.962 60.000 17.32 0.00 0.00 3.36
532 533 2.475111 ACATTCGCTCACTTACGTTGTG 59.525 45.455 13.12 13.12 36.82 3.33
536 537 2.058798 CACACATTCGCTCACTTACGT 58.941 47.619 0.00 0.00 0.00 3.57
811 812 1.605058 GACCTACAGCTCGGCCTTCA 61.605 60.000 0.00 0.00 0.00 3.02
1033 1035 1.024579 GTGCCTTCCGTACCACCATG 61.025 60.000 0.00 0.00 0.00 3.66
1034 1036 1.298667 GTGCCTTCCGTACCACCAT 59.701 57.895 0.00 0.00 0.00 3.55
1113 1115 4.007659 TCAGACACAGAGCGTCATACTTA 58.992 43.478 0.00 0.00 35.77 2.24
1392 1401 0.388649 CGTAAGGTGCTGCTCTTCGT 60.389 55.000 10.93 0.00 0.00 3.85
1573 1582 2.499289 GAGATCGTGATGGAGGGCATAT 59.501 50.000 0.00 0.00 0.00 1.78
1578 1587 1.032794 TTCGAGATCGTGATGGAGGG 58.967 55.000 1.70 0.00 40.80 4.30
1603 1612 0.512952 GCGCACGATTCCATGGATAC 59.487 55.000 17.06 11.66 0.00 2.24
1713 1722 0.314935 CAACAAGATGCGCCAACCTT 59.685 50.000 4.18 0.00 0.00 3.50
1728 1737 2.281484 GCTTCTCCACGCCCAACA 60.281 61.111 0.00 0.00 0.00 3.33
1769 1778 1.068954 CGGGAAAAGAAACTGCTCTGC 60.069 52.381 0.00 0.00 0.00 4.26
1771 1780 2.495084 GACGGGAAAAGAAACTGCTCT 58.505 47.619 0.00 0.00 0.00 4.09
1820 1829 4.347876 TCAGTTGATTCCTCTGAAGAACCA 59.652 41.667 5.73 0.00 35.65 3.67
1865 1874 2.450897 ACGGTTCCCTTTCCCCCA 60.451 61.111 0.00 0.00 0.00 4.96
1960 1969 0.478072 AAGGCACCATCCTGTTGTGA 59.522 50.000 0.00 0.00 36.38 3.58
2103 4067 2.469274 TCGACTCGACTCCTTAGTGT 57.531 50.000 0.00 0.00 35.56 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.