Multiple sequence alignment - TraesCS1D01G258400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G258400 chr1D 100.000 2465 0 0 1 2465 351027849 351030313 0 4553
1 TraesCS1D01G258400 chr1D 99.023 921 9 0 1545 2465 351036420 351037340 0 1652
2 TraesCS1D01G258400 chr1D 97.561 492 10 2 1 490 212432189 212431698 0 841
3 TraesCS1D01G258400 chr6D 98.092 1048 18 2 499 1544 108484627 108485674 0 1823
4 TraesCS1D01G258400 chr6D 98.914 921 10 0 1545 2465 288497280 288498200 0 1646
5 TraesCS1D01G258400 chr4D 98.092 1048 18 2 499 1544 123449567 123448520 0 1823
6 TraesCS1D01G258400 chr4D 98.919 925 10 0 1541 2465 412991003 412990079 0 1653
7 TraesCS1D01G258400 chr4D 99.023 921 9 0 1545 2465 412983964 412983044 0 1652
8 TraesCS1D01G258400 chr4D 98.914 921 10 0 1545 2465 8639182 8638262 0 1646
9 TraesCS1D01G258400 chr4D 97.363 493 10 3 1 490 123692283 123691791 0 835
10 TraesCS1D01G258400 chr1B 98.092 1048 18 2 499 1544 461439540 461440587 0 1823
11 TraesCS1D01G258400 chr1B 97.764 492 9 2 1 490 583553624 583553133 0 846
12 TraesCS1D01G258400 chrUn 97.996 1048 19 2 499 1544 217907087 217908134 0 1818
13 TraesCS1D01G258400 chrUn 97.769 493 8 2 1 490 233521952 233522444 0 846
14 TraesCS1D01G258400 chr3B 97.996 1048 19 2 499 1544 6011347 6010300 0 1818
15 TraesCS1D01G258400 chr3B 97.992 1046 17 3 501 1544 92297311 92296268 0 1812
16 TraesCS1D01G258400 chr2B 97.996 1048 19 2 499 1544 234541741 234540694 0 1818
17 TraesCS1D01G258400 chr7A 97.901 1048 20 2 499 1544 708281327 708280280 0 1812
18 TraesCS1D01G258400 chr3A 97.901 1048 20 2 499 1544 495105341 495104294 0 1812
19 TraesCS1D01G258400 chr7D 99.241 922 7 0 1544 2465 264864509 264865430 0 1664
20 TraesCS1D01G258400 chr7D 98.914 921 10 0 1545 2465 384923246 384924166 0 1646
21 TraesCS1D01G258400 chr7D 97.566 493 9 2 1 490 578994067 578993575 0 841
22 TraesCS1D01G258400 chr2D 99.133 923 8 0 1543 2465 80778590 80779512 0 1661
23 TraesCS1D01G258400 chr5D 98.915 922 10 0 1544 2465 97060921 97061842 0 1648
24 TraesCS1D01G258400 chr7B 97.967 492 8 2 1 490 716792523 716793014 0 852
25 TraesCS1D01G258400 chr7B 97.769 493 8 2 1 490 698123618 698124110 0 846
26 TraesCS1D01G258400 chr5A 97.764 492 9 2 1 490 238815591 238816082 0 846
27 TraesCS1D01G258400 chr4B 97.358 492 11 2 1 490 495534460 495534951 0 835


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G258400 chr1D 351027849 351030313 2464 False 4553 4553 100.000 1 2465 1 chr1D.!!$F1 2464
1 TraesCS1D01G258400 chr1D 351036420 351037340 920 False 1652 1652 99.023 1545 2465 1 chr1D.!!$F2 920
2 TraesCS1D01G258400 chr6D 108484627 108485674 1047 False 1823 1823 98.092 499 1544 1 chr6D.!!$F1 1045
3 TraesCS1D01G258400 chr6D 288497280 288498200 920 False 1646 1646 98.914 1545 2465 1 chr6D.!!$F2 920
4 TraesCS1D01G258400 chr4D 123448520 123449567 1047 True 1823 1823 98.092 499 1544 1 chr4D.!!$R2 1045
5 TraesCS1D01G258400 chr4D 412990079 412991003 924 True 1653 1653 98.919 1541 2465 1 chr4D.!!$R5 924
6 TraesCS1D01G258400 chr4D 412983044 412983964 920 True 1652 1652 99.023 1545 2465 1 chr4D.!!$R4 920
7 TraesCS1D01G258400 chr4D 8638262 8639182 920 True 1646 1646 98.914 1545 2465 1 chr4D.!!$R1 920
8 TraesCS1D01G258400 chr1B 461439540 461440587 1047 False 1823 1823 98.092 499 1544 1 chr1B.!!$F1 1045
9 TraesCS1D01G258400 chrUn 217907087 217908134 1047 False 1818 1818 97.996 499 1544 1 chrUn.!!$F1 1045
10 TraesCS1D01G258400 chr3B 6010300 6011347 1047 True 1818 1818 97.996 499 1544 1 chr3B.!!$R1 1045
11 TraesCS1D01G258400 chr3B 92296268 92297311 1043 True 1812 1812 97.992 501 1544 1 chr3B.!!$R2 1043
12 TraesCS1D01G258400 chr2B 234540694 234541741 1047 True 1818 1818 97.996 499 1544 1 chr2B.!!$R1 1045
13 TraesCS1D01G258400 chr7A 708280280 708281327 1047 True 1812 1812 97.901 499 1544 1 chr7A.!!$R1 1045
14 TraesCS1D01G258400 chr3A 495104294 495105341 1047 True 1812 1812 97.901 499 1544 1 chr3A.!!$R1 1045
15 TraesCS1D01G258400 chr7D 264864509 264865430 921 False 1664 1664 99.241 1544 2465 1 chr7D.!!$F1 921
16 TraesCS1D01G258400 chr7D 384923246 384924166 920 False 1646 1646 98.914 1545 2465 1 chr7D.!!$F2 920
17 TraesCS1D01G258400 chr2D 80778590 80779512 922 False 1661 1661 99.133 1543 2465 1 chr2D.!!$F1 922
18 TraesCS1D01G258400 chr5D 97060921 97061842 921 False 1648 1648 98.915 1544 2465 1 chr5D.!!$F1 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.0293 CACACGTGCAAGTTTCCCTG 59.971 55.0 17.22 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2346 1.517257 GACATGACCGAGACGCCTG 60.517 63.158 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.757836 TTGCTTTACCCAACTCCCC 57.242 52.632 0.00 0.00 0.00 4.81
19 20 1.154430 TTGCTTTACCCAACTCCCCT 58.846 50.000 0.00 0.00 0.00 4.79
20 21 1.154430 TGCTTTACCCAACTCCCCTT 58.846 50.000 0.00 0.00 0.00 3.95
21 22 1.501604 TGCTTTACCCAACTCCCCTTT 59.498 47.619 0.00 0.00 0.00 3.11
22 23 2.090999 TGCTTTACCCAACTCCCCTTTT 60.091 45.455 0.00 0.00 0.00 2.27
23 24 2.969950 GCTTTACCCAACTCCCCTTTTT 59.030 45.455 0.00 0.00 0.00 1.94
24 25 3.244078 GCTTTACCCAACTCCCCTTTTTG 60.244 47.826 0.00 0.00 0.00 2.44
25 26 3.975479 TTACCCAACTCCCCTTTTTGA 57.025 42.857 0.00 0.00 0.00 2.69
26 27 4.479156 TTACCCAACTCCCCTTTTTGAT 57.521 40.909 0.00 0.00 0.00 2.57
27 28 5.602291 TTACCCAACTCCCCTTTTTGATA 57.398 39.130 0.00 0.00 0.00 2.15
28 29 4.479156 ACCCAACTCCCCTTTTTGATAA 57.521 40.909 0.00 0.00 0.00 1.75
29 30 4.157246 ACCCAACTCCCCTTTTTGATAAC 58.843 43.478 0.00 0.00 0.00 1.89
30 31 4.156477 CCCAACTCCCCTTTTTGATAACA 58.844 43.478 0.00 0.00 0.00 2.41
31 32 4.591072 CCCAACTCCCCTTTTTGATAACAA 59.409 41.667 0.00 0.00 0.00 2.83
32 33 5.279456 CCCAACTCCCCTTTTTGATAACAAG 60.279 44.000 0.00 0.00 37.32 3.16
33 34 5.279456 CCAACTCCCCTTTTTGATAACAAGG 60.279 44.000 0.00 0.00 37.32 3.61
34 35 3.832490 ACTCCCCTTTTTGATAACAAGGC 59.168 43.478 1.83 0.00 37.32 4.35
35 36 3.831911 CTCCCCTTTTTGATAACAAGGCA 59.168 43.478 1.83 0.00 37.32 4.75
36 37 4.227197 TCCCCTTTTTGATAACAAGGCAA 58.773 39.130 1.83 0.00 37.32 4.52
37 38 4.656112 TCCCCTTTTTGATAACAAGGCAAA 59.344 37.500 1.83 0.00 37.32 3.68
38 39 5.131142 TCCCCTTTTTGATAACAAGGCAAAA 59.869 36.000 0.00 0.00 39.08 2.44
39 40 5.825151 CCCCTTTTTGATAACAAGGCAAAAA 59.175 36.000 0.00 0.00 44.47 1.94
40 41 6.238621 CCCCTTTTTGATAACAAGGCAAAAAC 60.239 38.462 0.00 0.00 42.89 2.43
41 42 6.238621 CCCTTTTTGATAACAAGGCAAAAACC 60.239 38.462 0.00 0.00 42.89 3.27
42 43 6.542005 CCTTTTTGATAACAAGGCAAAAACCT 59.458 34.615 0.00 0.00 42.89 3.50
43 44 7.254761 CCTTTTTGATAACAAGGCAAAAACCTC 60.255 37.037 0.00 0.00 42.89 3.85
44 45 4.864704 TGATAACAAGGCAAAAACCTCC 57.135 40.909 0.00 0.00 39.93 4.30
45 46 3.254657 TGATAACAAGGCAAAAACCTCCG 59.745 43.478 0.00 0.00 39.93 4.63
46 47 1.770294 AACAAGGCAAAAACCTCCGA 58.230 45.000 0.00 0.00 39.93 4.55
47 48 1.029681 ACAAGGCAAAAACCTCCGAC 58.970 50.000 0.00 0.00 39.93 4.79
48 49 0.313987 CAAGGCAAAAACCTCCGACC 59.686 55.000 0.00 0.00 39.93 4.79
49 50 0.826256 AAGGCAAAAACCTCCGACCC 60.826 55.000 0.00 0.00 39.93 4.46
50 51 2.622962 GGCAAAAACCTCCGACCCG 61.623 63.158 0.00 0.00 0.00 5.28
51 52 1.598685 GCAAAAACCTCCGACCCGA 60.599 57.895 0.00 0.00 0.00 5.14
52 53 1.848932 GCAAAAACCTCCGACCCGAC 61.849 60.000 0.00 0.00 0.00 4.79
53 54 0.533308 CAAAAACCTCCGACCCGACA 60.533 55.000 0.00 0.00 0.00 4.35
54 55 0.399075 AAAAACCTCCGACCCGACAT 59.601 50.000 0.00 0.00 0.00 3.06
55 56 0.399075 AAAACCTCCGACCCGACATT 59.601 50.000 0.00 0.00 0.00 2.71
56 57 0.036671 AAACCTCCGACCCGACATTC 60.037 55.000 0.00 0.00 0.00 2.67
57 58 1.189524 AACCTCCGACCCGACATTCA 61.190 55.000 0.00 0.00 0.00 2.57
58 59 0.976073 ACCTCCGACCCGACATTCAT 60.976 55.000 0.00 0.00 0.00 2.57
59 60 0.530650 CCTCCGACCCGACATTCATG 60.531 60.000 0.00 0.00 0.00 3.07
60 61 0.459899 CTCCGACCCGACATTCATGA 59.540 55.000 0.00 0.00 0.00 3.07
61 62 0.459899 TCCGACCCGACATTCATGAG 59.540 55.000 0.00 0.00 0.00 2.90
62 63 0.175760 CCGACCCGACATTCATGAGT 59.824 55.000 0.00 0.00 0.00 3.41
63 64 1.405526 CCGACCCGACATTCATGAGTT 60.406 52.381 0.00 0.00 0.00 3.01
64 65 2.346803 CGACCCGACATTCATGAGTTT 58.653 47.619 0.00 0.00 0.00 2.66
65 66 2.348666 CGACCCGACATTCATGAGTTTC 59.651 50.000 0.00 0.00 0.00 2.78
66 67 2.346803 ACCCGACATTCATGAGTTTCG 58.653 47.619 17.06 17.06 0.00 3.46
67 68 2.028476 ACCCGACATTCATGAGTTTCGA 60.028 45.455 23.40 0.00 0.00 3.71
68 69 3.000041 CCCGACATTCATGAGTTTCGAA 59.000 45.455 23.40 0.00 0.00 3.71
69 70 3.623060 CCCGACATTCATGAGTTTCGAAT 59.377 43.478 23.40 0.00 0.00 3.34
71 72 4.329801 CCGACATTCATGAGTTTCGAATGA 59.670 41.667 23.40 0.00 45.73 2.57
72 73 5.163864 CCGACATTCATGAGTTTCGAATGAA 60.164 40.000 23.40 12.18 45.73 2.57
73 74 5.956070 CGACATTCATGAGTTTCGAATGAAG 59.044 40.000 18.66 10.02 45.73 3.02
74 75 6.183360 CGACATTCATGAGTTTCGAATGAAGA 60.183 38.462 18.66 0.77 45.73 2.87
75 76 7.439157 ACATTCATGAGTTTCGAATGAAGAA 57.561 32.000 16.00 8.36 45.73 2.52
76 77 8.048534 ACATTCATGAGTTTCGAATGAAGAAT 57.951 30.769 16.00 9.87 45.73 2.40
77 78 7.966753 ACATTCATGAGTTTCGAATGAAGAATG 59.033 33.333 22.67 22.67 45.73 2.67
78 79 7.671495 TTCATGAGTTTCGAATGAAGAATGA 57.329 32.000 0.00 1.98 35.84 2.57
79 80 7.671495 TCATGAGTTTCGAATGAAGAATGAA 57.329 32.000 0.00 0.00 35.06 2.57
80 81 7.745972 TCATGAGTTTCGAATGAAGAATGAAG 58.254 34.615 0.00 0.00 35.06 3.02
81 82 7.603784 TCATGAGTTTCGAATGAAGAATGAAGA 59.396 33.333 0.00 0.00 35.06 2.87
82 83 7.356641 TGAGTTTCGAATGAAGAATGAAGAG 57.643 36.000 0.00 0.00 35.06 2.85
83 84 6.931281 TGAGTTTCGAATGAAGAATGAAGAGT 59.069 34.615 0.00 0.00 35.06 3.24
84 85 7.095481 TGAGTTTCGAATGAAGAATGAAGAGTG 60.095 37.037 0.00 0.00 35.06 3.51
85 86 5.536554 TTCGAATGAAGAATGAAGAGTGC 57.463 39.130 0.00 0.00 0.00 4.40
86 87 3.935203 TCGAATGAAGAATGAAGAGTGCC 59.065 43.478 0.00 0.00 0.00 5.01
87 88 3.064545 CGAATGAAGAATGAAGAGTGCCC 59.935 47.826 0.00 0.00 0.00 5.36
88 89 4.268359 GAATGAAGAATGAAGAGTGCCCT 58.732 43.478 0.00 0.00 0.00 5.19
89 90 3.063510 TGAAGAATGAAGAGTGCCCTG 57.936 47.619 0.00 0.00 0.00 4.45
90 91 1.742268 GAAGAATGAAGAGTGCCCTGC 59.258 52.381 0.00 0.00 0.00 4.85
91 92 0.034670 AGAATGAAGAGTGCCCTGCC 60.035 55.000 0.00 0.00 0.00 4.85
92 93 1.000396 AATGAAGAGTGCCCTGCCC 60.000 57.895 0.00 0.00 0.00 5.36
93 94 2.505364 AATGAAGAGTGCCCTGCCCC 62.505 60.000 0.00 0.00 0.00 5.80
94 95 3.334054 GAAGAGTGCCCTGCCCCT 61.334 66.667 0.00 0.00 0.00 4.79
95 96 3.334054 AAGAGTGCCCTGCCCCTC 61.334 66.667 0.00 0.00 0.00 4.30
96 97 3.880033 AAGAGTGCCCTGCCCCTCT 62.880 63.158 0.00 0.00 37.43 3.69
97 98 3.334054 GAGTGCCCTGCCCCTCTT 61.334 66.667 0.00 0.00 0.00 2.85
98 99 2.860971 AGTGCCCTGCCCCTCTTT 60.861 61.111 0.00 0.00 0.00 2.52
99 100 2.118294 GTGCCCTGCCCCTCTTTT 59.882 61.111 0.00 0.00 0.00 2.27
100 101 1.533994 GTGCCCTGCCCCTCTTTTT 60.534 57.895 0.00 0.00 0.00 1.94
121 122 7.847711 TTTTTCCATAAATCTTGGACTTGGA 57.152 32.000 0.00 0.00 42.88 3.53
122 123 7.847711 TTTTCCATAAATCTTGGACTTGGAA 57.152 32.000 0.00 0.00 42.88 3.53
123 124 7.466746 TTTCCATAAATCTTGGACTTGGAAG 57.533 36.000 0.00 0.00 42.88 3.46
124 125 6.139679 TCCATAAATCTTGGACTTGGAAGT 57.860 37.500 0.00 0.00 43.16 3.01
125 126 6.552008 TCCATAAATCTTGGACTTGGAAGTT 58.448 36.000 0.00 0.00 39.88 2.66
126 127 6.434028 TCCATAAATCTTGGACTTGGAAGTTG 59.566 38.462 0.00 0.00 39.88 3.16
127 128 6.350445 CCATAAATCTTGGACTTGGAAGTTGG 60.350 42.308 0.00 0.00 39.88 3.77
128 129 3.884037 ATCTTGGACTTGGAAGTTGGT 57.116 42.857 0.00 0.00 39.88 3.67
129 130 4.993705 ATCTTGGACTTGGAAGTTGGTA 57.006 40.909 0.00 0.00 39.88 3.25
130 131 4.781775 TCTTGGACTTGGAAGTTGGTAA 57.218 40.909 0.00 0.00 39.88 2.85
131 132 5.118729 TCTTGGACTTGGAAGTTGGTAAA 57.881 39.130 0.00 0.00 39.88 2.01
132 133 5.130350 TCTTGGACTTGGAAGTTGGTAAAG 58.870 41.667 0.00 0.00 39.88 1.85
133 134 4.781775 TGGACTTGGAAGTTGGTAAAGA 57.218 40.909 0.00 0.00 39.88 2.52
134 135 4.457466 TGGACTTGGAAGTTGGTAAAGAC 58.543 43.478 0.00 0.00 39.88 3.01
135 136 3.819337 GGACTTGGAAGTTGGTAAAGACC 59.181 47.826 0.00 0.00 42.21 3.85
136 137 3.819337 GACTTGGAAGTTGGTAAAGACCC 59.181 47.826 0.00 0.00 41.59 4.46
137 138 3.203487 ACTTGGAAGTTGGTAAAGACCCA 59.797 43.478 0.00 0.00 46.32 4.51
138 139 3.217681 TGGAAGTTGGTAAAGACCCAC 57.782 47.619 0.00 0.00 46.32 4.61
139 140 2.158579 TGGAAGTTGGTAAAGACCCACC 60.159 50.000 0.00 0.00 46.32 4.61
140 141 2.511659 GAAGTTGGTAAAGACCCACCC 58.488 52.381 0.00 0.00 46.32 4.61
141 142 0.775542 AGTTGGTAAAGACCCACCCC 59.224 55.000 0.00 0.00 46.32 4.95
142 143 0.775542 GTTGGTAAAGACCCACCCCT 59.224 55.000 0.00 0.00 46.32 4.79
143 144 1.146359 GTTGGTAAAGACCCACCCCTT 59.854 52.381 0.00 0.00 46.32 3.95
144 145 0.774908 TGGTAAAGACCCACCCCTTG 59.225 55.000 0.00 0.00 46.32 3.61
145 146 0.775542 GGTAAAGACCCACCCCTTGT 59.224 55.000 0.00 0.00 40.23 3.16
146 147 1.146359 GGTAAAGACCCACCCCTTGTT 59.854 52.381 0.00 0.00 40.23 2.83
147 148 2.425247 GGTAAAGACCCACCCCTTGTTT 60.425 50.000 0.00 0.00 40.23 2.83
148 149 3.181430 GGTAAAGACCCACCCCTTGTTTA 60.181 47.826 0.00 0.00 40.23 2.01
149 150 3.691698 AAAGACCCACCCCTTGTTTAA 57.308 42.857 0.00 0.00 0.00 1.52
150 151 2.971901 AGACCCACCCCTTGTTTAAG 57.028 50.000 0.00 0.00 0.00 1.85
151 152 2.141067 AGACCCACCCCTTGTTTAAGT 58.859 47.619 0.00 0.00 31.80 2.24
152 153 2.107726 AGACCCACCCCTTGTTTAAGTC 59.892 50.000 0.00 0.00 31.80 3.01
153 154 1.854280 ACCCACCCCTTGTTTAAGTCA 59.146 47.619 0.00 0.00 31.80 3.41
154 155 2.158519 ACCCACCCCTTGTTTAAGTCAG 60.159 50.000 0.00 0.00 31.80 3.51
155 156 2.107552 CCCACCCCTTGTTTAAGTCAGA 59.892 50.000 0.00 0.00 31.80 3.27
156 157 3.435890 CCCACCCCTTGTTTAAGTCAGAA 60.436 47.826 0.00 0.00 31.80 3.02
157 158 4.407365 CCACCCCTTGTTTAAGTCAGAAT 58.593 43.478 0.00 0.00 31.80 2.40
158 159 4.218417 CCACCCCTTGTTTAAGTCAGAATG 59.782 45.833 0.00 0.00 37.54 2.67
171 172 3.073274 TCAGAATGAGTCCTCGAGACA 57.927 47.619 15.71 8.87 42.56 3.41
172 173 3.625853 TCAGAATGAGTCCTCGAGACAT 58.374 45.455 15.71 10.76 42.56 3.06
173 174 4.019858 TCAGAATGAGTCCTCGAGACATT 58.980 43.478 15.71 17.84 42.56 2.71
174 175 4.142293 TCAGAATGAGTCCTCGAGACATTG 60.142 45.833 15.71 9.73 42.56 2.82
175 176 7.124225 TCAGAATGAGTCCTCGAGACATTGG 62.124 48.000 15.71 12.79 42.56 3.16
178 179 3.842869 GTCCTCGAGACATTGGCTT 57.157 52.632 15.71 0.00 45.55 4.35
179 180 2.100605 GTCCTCGAGACATTGGCTTT 57.899 50.000 15.71 0.00 45.55 3.51
180 181 2.003301 GTCCTCGAGACATTGGCTTTC 58.997 52.381 15.71 0.00 45.55 2.62
181 182 1.002366 CCTCGAGACATTGGCTTTCG 58.998 55.000 15.71 0.00 0.00 3.46
182 183 0.371645 CTCGAGACATTGGCTTTCGC 59.628 55.000 6.58 0.00 0.00 4.70
193 194 3.164028 GCTTTCGCCAACAGTGAAC 57.836 52.632 0.00 0.00 44.55 3.18
194 195 0.663153 GCTTTCGCCAACAGTGAACT 59.337 50.000 0.00 0.00 44.55 3.01
195 196 1.871039 GCTTTCGCCAACAGTGAACTA 59.129 47.619 0.00 0.00 44.55 2.24
196 197 2.484264 GCTTTCGCCAACAGTGAACTAT 59.516 45.455 0.00 0.00 44.55 2.12
197 198 3.058224 GCTTTCGCCAACAGTGAACTATT 60.058 43.478 0.00 0.00 44.55 1.73
198 199 4.153475 GCTTTCGCCAACAGTGAACTATTA 59.847 41.667 0.00 0.00 44.55 0.98
199 200 5.334569 GCTTTCGCCAACAGTGAACTATTAA 60.335 40.000 0.00 0.00 44.55 1.40
200 201 5.856126 TTCGCCAACAGTGAACTATTAAG 57.144 39.130 0.00 0.00 40.06 1.85
201 202 4.250464 TCGCCAACAGTGAACTATTAAGG 58.750 43.478 0.00 0.00 30.08 2.69
202 203 4.020928 TCGCCAACAGTGAACTATTAAGGA 60.021 41.667 0.00 0.00 30.08 3.36
203 204 4.876107 CGCCAACAGTGAACTATTAAGGAT 59.124 41.667 0.00 0.00 0.00 3.24
204 205 5.006746 CGCCAACAGTGAACTATTAAGGATC 59.993 44.000 0.00 0.00 0.00 3.36
205 206 5.006746 GCCAACAGTGAACTATTAAGGATCG 59.993 44.000 0.00 0.00 0.00 3.69
206 207 5.006746 CCAACAGTGAACTATTAAGGATCGC 59.993 44.000 0.00 0.00 0.00 4.58
207 208 5.339008 ACAGTGAACTATTAAGGATCGCA 57.661 39.130 0.00 0.00 0.00 5.10
208 209 5.918608 ACAGTGAACTATTAAGGATCGCAT 58.081 37.500 0.00 0.00 0.00 4.73
209 210 5.986135 ACAGTGAACTATTAAGGATCGCATC 59.014 40.000 0.00 0.00 0.00 3.91
222 223 3.972227 GCATCCCGCGCATATTCT 58.028 55.556 8.75 0.00 0.00 2.40
223 224 3.137484 GCATCCCGCGCATATTCTA 57.863 52.632 8.75 0.00 0.00 2.10
224 225 0.721718 GCATCCCGCGCATATTCTAC 59.278 55.000 8.75 0.00 0.00 2.59
225 226 1.939381 GCATCCCGCGCATATTCTACA 60.939 52.381 8.75 0.00 0.00 2.74
226 227 2.621338 CATCCCGCGCATATTCTACAT 58.379 47.619 8.75 0.00 0.00 2.29
227 228 2.831685 TCCCGCGCATATTCTACATT 57.168 45.000 8.75 0.00 0.00 2.71
228 229 3.945981 TCCCGCGCATATTCTACATTA 57.054 42.857 8.75 0.00 0.00 1.90
229 230 4.465632 TCCCGCGCATATTCTACATTAT 57.534 40.909 8.75 0.00 0.00 1.28
230 231 5.585820 TCCCGCGCATATTCTACATTATA 57.414 39.130 8.75 0.00 0.00 0.98
231 232 5.588240 TCCCGCGCATATTCTACATTATAG 58.412 41.667 8.75 0.00 0.00 1.31
232 233 4.209288 CCCGCGCATATTCTACATTATAGC 59.791 45.833 8.75 0.00 0.00 2.97
233 234 4.209288 CCGCGCATATTCTACATTATAGCC 59.791 45.833 8.75 0.00 0.00 3.93
234 235 5.043903 CGCGCATATTCTACATTATAGCCT 58.956 41.667 8.75 0.00 0.00 4.58
235 236 5.051441 CGCGCATATTCTACATTATAGCCTG 60.051 44.000 8.75 0.00 0.00 4.85
236 237 5.277058 GCGCATATTCTACATTATAGCCTGC 60.277 44.000 0.30 0.00 0.00 4.85
237 238 5.812127 CGCATATTCTACATTATAGCCTGCA 59.188 40.000 0.00 0.00 0.00 4.41
238 239 6.313658 CGCATATTCTACATTATAGCCTGCAA 59.686 38.462 0.00 0.00 0.00 4.08
239 240 7.467623 GCATATTCTACATTATAGCCTGCAAC 58.532 38.462 0.00 0.00 0.00 4.17
240 241 7.335422 GCATATTCTACATTATAGCCTGCAACT 59.665 37.037 0.00 0.00 0.00 3.16
241 242 9.875691 CATATTCTACATTATAGCCTGCAACTA 57.124 33.333 0.00 0.00 0.00 2.24
244 245 9.799106 ATTCTACATTATAGCCTGCAACTAATT 57.201 29.630 0.58 0.00 0.00 1.40
245 246 8.833231 TCTACATTATAGCCTGCAACTAATTC 57.167 34.615 0.58 0.00 0.00 2.17
246 247 8.428852 TCTACATTATAGCCTGCAACTAATTCA 58.571 33.333 0.58 0.00 0.00 2.57
247 248 7.502120 ACATTATAGCCTGCAACTAATTCAG 57.498 36.000 0.58 0.00 0.00 3.02
248 249 6.016777 ACATTATAGCCTGCAACTAATTCAGC 60.017 38.462 0.58 0.00 0.00 4.26
249 250 2.503895 AGCCTGCAACTAATTCAGCT 57.496 45.000 0.00 0.00 0.00 4.24
250 251 2.800250 AGCCTGCAACTAATTCAGCTT 58.200 42.857 0.00 0.00 0.00 3.74
251 252 2.751806 AGCCTGCAACTAATTCAGCTTC 59.248 45.455 0.00 0.00 0.00 3.86
252 253 2.159324 GCCTGCAACTAATTCAGCTTCC 60.159 50.000 0.00 0.00 0.00 3.46
253 254 2.096496 CCTGCAACTAATTCAGCTTCCG 59.904 50.000 0.00 0.00 0.00 4.30
254 255 1.468520 TGCAACTAATTCAGCTTCCGC 59.531 47.619 0.00 0.00 0.00 5.54
256 257 2.162408 GCAACTAATTCAGCTTCCGCTT 59.838 45.455 0.00 0.00 46.47 4.68
257 258 3.729163 GCAACTAATTCAGCTTCCGCTTC 60.729 47.826 0.00 0.00 46.47 3.86
258 259 3.618690 ACTAATTCAGCTTCCGCTTCT 57.381 42.857 0.00 0.00 46.47 2.85
259 260 3.265791 ACTAATTCAGCTTCCGCTTCTG 58.734 45.455 0.00 0.00 46.47 3.02
260 261 1.457346 AATTCAGCTTCCGCTTCTGG 58.543 50.000 0.00 0.00 46.47 3.86
261 262 0.393537 ATTCAGCTTCCGCTTCTGGG 60.394 55.000 0.00 0.00 46.47 4.45
262 263 1.480212 TTCAGCTTCCGCTTCTGGGA 61.480 55.000 0.00 0.00 46.47 4.37
263 264 1.449246 CAGCTTCCGCTTCTGGGAG 60.449 63.158 0.00 0.00 46.47 4.30
264 265 1.610673 AGCTTCCGCTTCTGGGAGA 60.611 57.895 0.00 0.00 46.47 3.71
265 266 0.980231 AGCTTCCGCTTCTGGGAGAT 60.980 55.000 0.00 0.00 46.47 2.75
266 267 0.531753 GCTTCCGCTTCTGGGAGATC 60.532 60.000 0.00 0.00 36.66 2.75
267 268 0.826715 CTTCCGCTTCTGGGAGATCA 59.173 55.000 0.00 0.00 36.66 2.92
268 269 0.826715 TTCCGCTTCTGGGAGATCAG 59.173 55.000 0.00 0.00 34.45 2.90
269 270 0.033109 TCCGCTTCTGGGAGATCAGA 60.033 55.000 0.00 0.00 41.51 3.27
270 271 0.103937 CCGCTTCTGGGAGATCAGAC 59.896 60.000 0.00 0.00 42.74 3.51
271 272 0.248825 CGCTTCTGGGAGATCAGACG 60.249 60.000 0.00 0.00 42.74 4.18
272 273 0.103937 GCTTCTGGGAGATCAGACGG 59.896 60.000 0.00 0.00 42.74 4.79
273 274 1.769026 CTTCTGGGAGATCAGACGGA 58.231 55.000 0.00 0.00 42.74 4.69
274 275 1.680735 CTTCTGGGAGATCAGACGGAG 59.319 57.143 0.00 0.00 42.74 4.63
275 276 0.753479 TCTGGGAGATCAGACGGAGC 60.753 60.000 0.00 0.00 38.70 4.70
279 280 4.966123 AGATCAGACGGAGCTCGA 57.034 55.556 7.83 0.00 37.91 4.04
280 281 3.412722 AGATCAGACGGAGCTCGAT 57.587 52.632 7.83 4.11 37.91 3.59
281 282 1.686355 AGATCAGACGGAGCTCGATT 58.314 50.000 7.83 0.00 37.91 3.34
282 283 2.852449 AGATCAGACGGAGCTCGATTA 58.148 47.619 7.83 0.00 37.91 1.75
283 284 2.811431 AGATCAGACGGAGCTCGATTAG 59.189 50.000 7.83 0.00 37.91 1.73
284 285 2.039818 TCAGACGGAGCTCGATTAGT 57.960 50.000 7.83 2.43 42.43 2.24
285 286 2.366533 TCAGACGGAGCTCGATTAGTT 58.633 47.619 7.83 0.00 42.43 2.24
286 287 2.753452 TCAGACGGAGCTCGATTAGTTT 59.247 45.455 7.83 0.00 42.43 2.66
287 288 3.109619 CAGACGGAGCTCGATTAGTTTC 58.890 50.000 7.83 0.00 42.43 2.78
288 289 3.018149 AGACGGAGCTCGATTAGTTTCT 58.982 45.455 7.83 0.00 42.43 2.52
289 290 3.109619 GACGGAGCTCGATTAGTTTCTG 58.890 50.000 7.83 0.00 42.43 3.02
290 291 1.855360 CGGAGCTCGATTAGTTTCTGC 59.145 52.381 7.83 0.00 42.43 4.26
291 292 2.480416 CGGAGCTCGATTAGTTTCTGCT 60.480 50.000 7.83 0.00 42.43 4.24
292 293 3.243101 CGGAGCTCGATTAGTTTCTGCTA 60.243 47.826 7.83 0.00 42.43 3.49
293 294 4.295051 GGAGCTCGATTAGTTTCTGCTAG 58.705 47.826 7.83 0.00 0.00 3.42
294 295 4.036971 GGAGCTCGATTAGTTTCTGCTAGA 59.963 45.833 7.83 0.00 0.00 2.43
295 296 4.927422 AGCTCGATTAGTTTCTGCTAGAC 58.073 43.478 0.00 0.00 0.00 2.59
296 297 3.726730 GCTCGATTAGTTTCTGCTAGACG 59.273 47.826 0.00 0.00 0.00 4.18
297 298 4.496010 GCTCGATTAGTTTCTGCTAGACGA 60.496 45.833 0.00 0.00 33.38 4.20
298 299 5.158101 TCGATTAGTTTCTGCTAGACGAG 57.842 43.478 0.00 0.00 32.02 4.18
299 300 4.035324 TCGATTAGTTTCTGCTAGACGAGG 59.965 45.833 0.00 0.00 32.02 4.63
300 301 4.035324 CGATTAGTTTCTGCTAGACGAGGA 59.965 45.833 0.00 0.00 0.00 3.71
301 302 5.448768 CGATTAGTTTCTGCTAGACGAGGAA 60.449 44.000 0.00 0.00 0.00 3.36
302 303 5.916661 TTAGTTTCTGCTAGACGAGGAAT 57.083 39.130 0.00 0.00 0.00 3.01
303 304 7.520131 CGATTAGTTTCTGCTAGACGAGGAATA 60.520 40.741 0.00 0.00 0.00 1.75
304 305 5.916661 AGTTTCTGCTAGACGAGGAATAA 57.083 39.130 0.00 0.00 0.00 1.40
305 306 5.897050 AGTTTCTGCTAGACGAGGAATAAG 58.103 41.667 0.00 0.00 0.00 1.73
306 307 4.920640 TTCTGCTAGACGAGGAATAAGG 57.079 45.455 0.00 0.00 0.00 2.69
307 308 4.166246 TCTGCTAGACGAGGAATAAGGA 57.834 45.455 0.00 0.00 0.00 3.36
308 309 4.533815 TCTGCTAGACGAGGAATAAGGAA 58.466 43.478 0.00 0.00 0.00 3.36
309 310 4.338682 TCTGCTAGACGAGGAATAAGGAAC 59.661 45.833 0.00 0.00 0.00 3.62
310 311 4.021229 TGCTAGACGAGGAATAAGGAACA 58.979 43.478 0.00 0.00 0.00 3.18
311 312 4.649674 TGCTAGACGAGGAATAAGGAACAT 59.350 41.667 0.00 0.00 0.00 2.71
312 313 5.831525 TGCTAGACGAGGAATAAGGAACATA 59.168 40.000 0.00 0.00 0.00 2.29
313 314 6.322969 TGCTAGACGAGGAATAAGGAACATAA 59.677 38.462 0.00 0.00 0.00 1.90
314 315 6.641723 GCTAGACGAGGAATAAGGAACATAAC 59.358 42.308 0.00 0.00 0.00 1.89
315 316 5.915175 AGACGAGGAATAAGGAACATAACC 58.085 41.667 0.00 0.00 0.00 2.85
316 317 5.424252 AGACGAGGAATAAGGAACATAACCA 59.576 40.000 0.00 0.00 0.00 3.67
317 318 6.057321 ACGAGGAATAAGGAACATAACCAA 57.943 37.500 0.00 0.00 0.00 3.67
318 319 6.659824 ACGAGGAATAAGGAACATAACCAAT 58.340 36.000 0.00 0.00 0.00 3.16
319 320 7.798071 ACGAGGAATAAGGAACATAACCAATA 58.202 34.615 0.00 0.00 0.00 1.90
320 321 7.713942 ACGAGGAATAAGGAACATAACCAATAC 59.286 37.037 0.00 0.00 0.00 1.89
321 322 7.713507 CGAGGAATAAGGAACATAACCAATACA 59.286 37.037 0.00 0.00 0.00 2.29
322 323 8.980481 AGGAATAAGGAACATAACCAATACAG 57.020 34.615 0.00 0.00 0.00 2.74
323 324 7.998964 AGGAATAAGGAACATAACCAATACAGG 59.001 37.037 0.00 0.00 0.00 4.00
324 325 7.230712 GGAATAAGGAACATAACCAATACAGGG 59.769 40.741 0.00 0.00 0.00 4.45
325 326 5.789574 AAGGAACATAACCAATACAGGGA 57.210 39.130 0.00 0.00 0.00 4.20
326 327 5.789574 AGGAACATAACCAATACAGGGAA 57.210 39.130 0.00 0.00 0.00 3.97
327 328 5.506708 AGGAACATAACCAATACAGGGAAC 58.493 41.667 0.00 0.00 0.00 3.62
328 329 5.014755 AGGAACATAACCAATACAGGGAACA 59.985 40.000 0.00 0.00 0.00 3.18
329 330 5.712917 GGAACATAACCAATACAGGGAACAA 59.287 40.000 0.00 0.00 0.00 2.83
330 331 6.127730 GGAACATAACCAATACAGGGAACAAG 60.128 42.308 0.00 0.00 0.00 3.16
331 332 5.261216 ACATAACCAATACAGGGAACAAGG 58.739 41.667 0.00 0.00 0.00 3.61
332 333 2.899303 ACCAATACAGGGAACAAGGG 57.101 50.000 0.00 0.00 0.00 3.95
333 334 2.354328 ACCAATACAGGGAACAAGGGA 58.646 47.619 0.00 0.00 0.00 4.20
334 335 2.719705 ACCAATACAGGGAACAAGGGAA 59.280 45.455 0.00 0.00 0.00 3.97
335 336 3.336694 ACCAATACAGGGAACAAGGGAAT 59.663 43.478 0.00 0.00 0.00 3.01
336 337 4.542525 ACCAATACAGGGAACAAGGGAATA 59.457 41.667 0.00 0.00 0.00 1.75
337 338 4.887655 CCAATACAGGGAACAAGGGAATAC 59.112 45.833 0.00 0.00 0.00 1.89
338 339 4.790718 ATACAGGGAACAAGGGAATACC 57.209 45.455 0.00 0.00 40.67 2.73
339 340 1.280998 ACAGGGAACAAGGGAATACCG 59.719 52.381 0.00 0.00 46.96 4.02
340 341 0.916809 AGGGAACAAGGGAATACCGG 59.083 55.000 0.00 0.00 46.96 5.28
341 342 0.913924 GGGAACAAGGGAATACCGGA 59.086 55.000 9.46 0.00 46.96 5.14
342 343 1.407851 GGGAACAAGGGAATACCGGAC 60.408 57.143 9.46 0.00 46.96 4.79
343 344 1.407851 GGAACAAGGGAATACCGGACC 60.408 57.143 9.46 5.79 46.96 4.46
344 345 1.279846 GAACAAGGGAATACCGGACCA 59.720 52.381 9.46 0.00 46.96 4.02
345 346 1.591768 ACAAGGGAATACCGGACCAT 58.408 50.000 9.46 0.12 46.96 3.55
346 347 2.766736 ACAAGGGAATACCGGACCATA 58.233 47.619 9.46 0.00 46.96 2.74
347 348 3.323775 ACAAGGGAATACCGGACCATAT 58.676 45.455 9.46 0.00 46.96 1.78
348 349 3.326880 ACAAGGGAATACCGGACCATATC 59.673 47.826 9.46 0.00 46.96 1.63
349 350 3.562108 AGGGAATACCGGACCATATCT 57.438 47.619 9.46 0.00 46.96 1.98
350 351 3.173965 AGGGAATACCGGACCATATCTG 58.826 50.000 9.46 0.00 46.96 2.90
351 352 2.354805 GGGAATACCGGACCATATCTGC 60.355 54.545 9.46 0.00 36.97 4.26
352 353 2.567615 GGAATACCGGACCATATCTGCT 59.432 50.000 9.46 0.00 31.52 4.24
353 354 3.008049 GGAATACCGGACCATATCTGCTT 59.992 47.826 9.46 0.00 31.52 3.91
354 355 4.505039 GGAATACCGGACCATATCTGCTTT 60.505 45.833 9.46 0.00 31.52 3.51
355 356 4.706842 ATACCGGACCATATCTGCTTTT 57.293 40.909 9.46 0.00 31.52 2.27
356 357 2.643551 ACCGGACCATATCTGCTTTTG 58.356 47.619 9.46 0.00 31.52 2.44
367 368 4.651585 GCTTTTGCGCCATGACAA 57.348 50.000 4.18 0.00 34.86 3.18
368 369 3.126729 GCTTTTGCGCCATGACAAT 57.873 47.368 4.18 0.00 34.86 2.71
369 370 0.994263 GCTTTTGCGCCATGACAATC 59.006 50.000 4.18 0.00 34.86 2.67
370 371 1.403249 GCTTTTGCGCCATGACAATCT 60.403 47.619 4.18 0.00 34.86 2.40
371 372 2.523015 CTTTTGCGCCATGACAATCTC 58.477 47.619 4.18 0.00 0.00 2.75
372 373 1.532523 TTTGCGCCATGACAATCTCA 58.467 45.000 4.18 0.00 0.00 3.27
373 374 0.804364 TTGCGCCATGACAATCTCAC 59.196 50.000 4.18 0.00 0.00 3.51
374 375 0.036105 TGCGCCATGACAATCTCACT 60.036 50.000 4.18 0.00 0.00 3.41
375 376 0.654683 GCGCCATGACAATCTCACTC 59.345 55.000 0.00 0.00 0.00 3.51
376 377 0.926155 CGCCATGACAATCTCACTCG 59.074 55.000 0.00 0.00 0.00 4.18
377 378 1.469767 CGCCATGACAATCTCACTCGA 60.470 52.381 0.00 0.00 0.00 4.04
378 379 2.621338 GCCATGACAATCTCACTCGAA 58.379 47.619 0.00 0.00 0.00 3.71
379 380 3.002791 GCCATGACAATCTCACTCGAAA 58.997 45.455 0.00 0.00 0.00 3.46
380 381 3.624861 GCCATGACAATCTCACTCGAAAT 59.375 43.478 0.00 0.00 0.00 2.17
381 382 4.811024 GCCATGACAATCTCACTCGAAATA 59.189 41.667 0.00 0.00 0.00 1.40
382 383 5.277058 GCCATGACAATCTCACTCGAAATAC 60.277 44.000 0.00 0.00 0.00 1.89
383 384 5.812127 CCATGACAATCTCACTCGAAATACA 59.188 40.000 0.00 0.00 0.00 2.29
384 385 6.019237 CCATGACAATCTCACTCGAAATACAG 60.019 42.308 0.00 0.00 0.00 2.74
385 386 5.410924 TGACAATCTCACTCGAAATACAGG 58.589 41.667 0.00 0.00 0.00 4.00
386 387 4.759782 ACAATCTCACTCGAAATACAGGG 58.240 43.478 0.00 0.00 0.00 4.45
387 388 4.466370 ACAATCTCACTCGAAATACAGGGA 59.534 41.667 0.00 0.00 0.00 4.20
388 389 4.657436 ATCTCACTCGAAATACAGGGAC 57.343 45.455 0.00 0.00 0.00 4.46
389 390 2.758979 TCTCACTCGAAATACAGGGACC 59.241 50.000 0.00 0.00 0.00 4.46
390 391 1.475280 TCACTCGAAATACAGGGACCG 59.525 52.381 0.00 0.00 0.00 4.79
391 392 1.475280 CACTCGAAATACAGGGACCGA 59.525 52.381 0.00 0.00 0.00 4.69
392 393 1.475682 ACTCGAAATACAGGGACCGAC 59.524 52.381 0.00 0.00 0.00 4.79
393 394 1.475280 CTCGAAATACAGGGACCGACA 59.525 52.381 0.00 0.00 0.00 4.35
394 395 1.203052 TCGAAATACAGGGACCGACAC 59.797 52.381 0.00 0.00 0.00 3.67
395 396 1.067425 CGAAATACAGGGACCGACACA 60.067 52.381 0.00 0.00 0.00 3.72
396 397 2.418197 CGAAATACAGGGACCGACACAT 60.418 50.000 0.00 0.00 0.00 3.21
397 398 3.181484 CGAAATACAGGGACCGACACATA 60.181 47.826 0.00 0.00 0.00 2.29
398 399 4.500887 CGAAATACAGGGACCGACACATAT 60.501 45.833 0.00 0.00 0.00 1.78
399 400 5.365619 GAAATACAGGGACCGACACATATT 58.634 41.667 0.00 0.00 0.00 1.28
400 401 6.488769 AAATACAGGGACCGACACATATTA 57.511 37.500 0.00 0.00 0.00 0.98
401 402 5.723672 ATACAGGGACCGACACATATTAG 57.276 43.478 0.00 0.00 0.00 1.73
402 403 3.371965 ACAGGGACCGACACATATTAGT 58.628 45.455 0.00 0.00 0.00 2.24
403 404 4.539726 ACAGGGACCGACACATATTAGTA 58.460 43.478 0.00 0.00 0.00 1.82
404 405 4.340381 ACAGGGACCGACACATATTAGTAC 59.660 45.833 0.00 0.00 0.00 2.73
405 406 4.340097 CAGGGACCGACACATATTAGTACA 59.660 45.833 0.00 0.00 0.00 2.90
406 407 4.583489 AGGGACCGACACATATTAGTACAG 59.417 45.833 0.00 0.00 0.00 2.74
407 408 4.340381 GGGACCGACACATATTAGTACAGT 59.660 45.833 0.00 0.00 0.00 3.55
408 409 5.532406 GGGACCGACACATATTAGTACAGTA 59.468 44.000 0.00 0.00 0.00 2.74
409 410 6.208204 GGGACCGACACATATTAGTACAGTAT 59.792 42.308 0.00 0.00 0.00 2.12
410 411 7.391554 GGGACCGACACATATTAGTACAGTATA 59.608 40.741 0.00 0.00 0.00 1.47
411 412 8.233190 GGACCGACACATATTAGTACAGTATAC 58.767 40.741 0.00 0.00 0.00 1.47
412 413 8.103948 ACCGACACATATTAGTACAGTATACC 57.896 38.462 0.00 0.00 0.00 2.73
413 414 7.095060 ACCGACACATATTAGTACAGTATACCG 60.095 40.741 0.00 0.00 0.00 4.02
414 415 7.239271 CGACACATATTAGTACAGTATACCGG 58.761 42.308 0.00 0.00 0.00 5.28
415 416 7.458409 ACACATATTAGTACAGTATACCGGG 57.542 40.000 6.32 0.00 0.00 5.73
416 417 6.435277 ACACATATTAGTACAGTATACCGGGG 59.565 42.308 6.32 0.00 0.00 5.73
417 418 6.435277 CACATATTAGTACAGTATACCGGGGT 59.565 42.308 6.32 0.00 0.00 4.95
418 419 6.660949 ACATATTAGTACAGTATACCGGGGTC 59.339 42.308 6.32 0.00 0.00 4.46
419 420 2.371658 AGTACAGTATACCGGGGTCC 57.628 55.000 6.32 0.00 0.00 4.46
420 421 1.133356 AGTACAGTATACCGGGGTCCC 60.133 57.143 6.32 0.00 0.00 4.46
421 422 1.133356 GTACAGTATACCGGGGTCCCT 60.133 57.143 6.32 0.00 0.00 4.20
422 423 0.398098 ACAGTATACCGGGGTCCCTG 60.398 60.000 10.19 10.19 0.00 4.45
423 424 1.458967 AGTATACCGGGGTCCCTGC 60.459 63.158 11.85 0.00 0.00 4.85
424 425 2.122725 TATACCGGGGTCCCTGCC 60.123 66.667 11.85 0.00 0.00 4.85
425 426 3.024337 TATACCGGGGTCCCTGCCA 62.024 63.158 11.85 0.81 0.00 4.92
426 427 2.957902 TATACCGGGGTCCCTGCCAG 62.958 65.000 11.85 0.22 0.00 4.85
429 430 4.410400 CGGGGTCCCTGCCAGAAC 62.410 72.222 8.15 0.00 0.00 3.01
430 431 4.048470 GGGGTCCCTGCCAGAACC 62.048 72.222 8.15 7.49 40.67 3.62
431 432 3.256960 GGGTCCCTGCCAGAACCA 61.257 66.667 15.37 0.00 41.10 3.67
432 433 2.034221 GGTCCCTGCCAGAACCAC 59.966 66.667 10.34 0.00 0.00 4.16
433 434 2.829384 GGTCCCTGCCAGAACCACA 61.829 63.158 10.34 0.00 0.00 4.17
434 435 1.600916 GTCCCTGCCAGAACCACAC 60.601 63.158 0.00 0.00 0.00 3.82
435 436 2.669569 CCCTGCCAGAACCACACG 60.670 66.667 0.00 0.00 0.00 4.49
436 437 2.111043 CCTGCCAGAACCACACGT 59.889 61.111 0.00 0.00 0.00 4.49
437 438 2.253758 CCTGCCAGAACCACACGTG 61.254 63.158 15.48 15.48 0.00 4.49
438 439 2.896801 CTGCCAGAACCACACGTGC 61.897 63.158 17.22 0.00 0.00 5.34
439 440 2.899838 GCCAGAACCACACGTGCA 60.900 61.111 17.22 0.00 0.00 4.57
440 441 2.477176 GCCAGAACCACACGTGCAA 61.477 57.895 17.22 0.00 0.00 4.08
441 442 1.648720 CCAGAACCACACGTGCAAG 59.351 57.895 17.22 7.01 0.00 4.01
442 443 1.095228 CCAGAACCACACGTGCAAGT 61.095 55.000 17.22 7.74 0.00 3.16
443 444 0.732571 CAGAACCACACGTGCAAGTT 59.267 50.000 17.22 16.31 0.00 2.66
444 445 1.132262 CAGAACCACACGTGCAAGTTT 59.868 47.619 17.22 0.05 0.00 2.66
445 446 1.400494 AGAACCACACGTGCAAGTTTC 59.600 47.619 17.22 10.16 0.00 2.78
446 447 0.454196 AACCACACGTGCAAGTTTCC 59.546 50.000 17.22 0.00 0.00 3.13
447 448 1.358759 CCACACGTGCAAGTTTCCC 59.641 57.895 17.22 0.00 0.00 3.97
448 449 1.101049 CCACACGTGCAAGTTTCCCT 61.101 55.000 17.22 0.00 0.00 4.20
449 450 0.029300 CACACGTGCAAGTTTCCCTG 59.971 55.000 17.22 0.00 0.00 4.45
450 451 1.008538 CACGTGCAAGTTTCCCTGC 60.009 57.895 0.82 0.00 0.00 4.85
451 452 1.453015 ACGTGCAAGTTTCCCTGCA 60.453 52.632 0.00 0.00 34.67 4.41
452 453 0.823356 ACGTGCAAGTTTCCCTGCAT 60.823 50.000 0.00 0.00 39.57 3.96
453 454 0.387622 CGTGCAAGTTTCCCTGCATG 60.388 55.000 0.00 0.92 39.57 4.06
454 455 0.675633 GTGCAAGTTTCCCTGCATGT 59.324 50.000 0.00 0.00 39.57 3.21
455 456 0.675083 TGCAAGTTTCCCTGCATGTG 59.325 50.000 0.00 0.00 31.84 3.21
456 457 0.037975 GCAAGTTTCCCTGCATGTGG 60.038 55.000 0.00 0.00 0.00 4.17
457 458 0.037975 CAAGTTTCCCTGCATGTGGC 60.038 55.000 0.00 0.00 45.13 5.01
458 459 0.178953 AAGTTTCCCTGCATGTGGCT 60.179 50.000 0.00 0.00 45.15 4.75
459 460 0.610232 AGTTTCCCTGCATGTGGCTC 60.610 55.000 0.00 0.00 45.15 4.70
460 461 1.675310 TTTCCCTGCATGTGGCTCG 60.675 57.895 0.00 0.00 45.15 5.03
461 462 2.410322 TTTCCCTGCATGTGGCTCGT 62.410 55.000 0.00 0.00 45.15 4.18
462 463 2.803155 TTCCCTGCATGTGGCTCGTC 62.803 60.000 0.00 0.00 45.15 4.20
463 464 2.821366 CCTGCATGTGGCTCGTCC 60.821 66.667 0.00 0.00 45.15 4.79
464 465 3.190849 CTGCATGTGGCTCGTCCG 61.191 66.667 0.00 0.00 45.15 4.79
465 466 3.939837 CTGCATGTGGCTCGTCCGT 62.940 63.158 0.00 0.00 45.15 4.69
466 467 3.490759 GCATGTGGCTCGTCCGTG 61.491 66.667 0.00 0.00 40.25 4.94
467 468 3.490759 CATGTGGCTCGTCCGTGC 61.491 66.667 5.26 5.26 37.80 5.34
468 469 3.695606 ATGTGGCTCGTCCGTGCT 61.696 61.111 12.64 0.00 37.80 4.40
469 470 3.240134 ATGTGGCTCGTCCGTGCTT 62.240 57.895 12.64 0.00 37.80 3.91
470 471 2.665185 GTGGCTCGTCCGTGCTTT 60.665 61.111 12.64 0.00 37.80 3.51
471 472 2.110213 TGGCTCGTCCGTGCTTTT 59.890 55.556 12.64 0.00 37.80 2.27
472 473 0.947180 GTGGCTCGTCCGTGCTTTTA 60.947 55.000 12.64 0.00 37.80 1.52
473 474 0.036765 TGGCTCGTCCGTGCTTTTAT 60.037 50.000 12.64 0.00 37.80 1.40
474 475 0.651031 GGCTCGTCCGTGCTTTTATC 59.349 55.000 12.64 0.00 35.28 1.75
475 476 0.651031 GCTCGTCCGTGCTTTTATCC 59.349 55.000 6.50 0.00 0.00 2.59
476 477 0.921347 CTCGTCCGTGCTTTTATCCG 59.079 55.000 0.00 0.00 0.00 4.18
477 478 0.527113 TCGTCCGTGCTTTTATCCGA 59.473 50.000 0.00 0.00 0.00 4.55
478 479 0.921347 CGTCCGTGCTTTTATCCGAG 59.079 55.000 0.00 0.00 0.00 4.63
479 480 1.287425 GTCCGTGCTTTTATCCGAGG 58.713 55.000 0.00 0.00 0.00 4.63
480 481 0.461339 TCCGTGCTTTTATCCGAGGC 60.461 55.000 0.00 0.00 0.00 4.70
481 482 1.636340 CGTGCTTTTATCCGAGGCG 59.364 57.895 0.00 0.00 0.00 5.52
482 483 1.352056 GTGCTTTTATCCGAGGCGC 59.648 57.895 0.00 0.00 0.00 6.53
483 484 1.090052 GTGCTTTTATCCGAGGCGCT 61.090 55.000 7.64 0.00 0.00 5.92
484 485 1.089481 TGCTTTTATCCGAGGCGCTG 61.089 55.000 7.64 0.00 0.00 5.18
485 486 1.643832 CTTTTATCCGAGGCGCTGC 59.356 57.895 7.64 0.00 0.00 5.25
497 498 4.227134 CGCTGCCTGCCTCCGTAT 62.227 66.667 0.00 0.00 38.78 3.06
511 512 0.316204 CCGTATACGCCTCGGGAAAT 59.684 55.000 19.86 0.00 40.49 2.17
619 621 0.033894 GGCCCGGAAATAGAACCCAA 60.034 55.000 0.73 0.00 0.00 4.12
623 625 1.375551 CGGAAATAGAACCCAACCCG 58.624 55.000 0.00 0.00 0.00 5.28
630 632 1.061546 AGAACCCAACCCGCTTTCTA 58.938 50.000 0.00 0.00 0.00 2.10
791 794 2.087462 AAAGGCGCCCAGCTTTCAAC 62.087 55.000 26.15 0.00 44.87 3.18
904 908 5.393962 GTGACCTTATTGCATGTTTCAGAC 58.606 41.667 0.00 0.00 0.00 3.51
1368 1372 0.607112 TGTCAACCGGCAACCGTATA 59.393 50.000 0.00 0.00 46.80 1.47
1753 1757 3.378427 GGTTTCCTGACTATGGACATTGC 59.622 47.826 0.00 0.00 32.65 3.56
2054 2058 2.876992 CGTATGACGGAGAGGTATCG 57.123 55.000 0.00 0.00 38.08 2.92
2130 2134 0.394080 TCACGGGATCATGCATTGCA 60.394 50.000 14.72 14.72 44.86 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.154430 AGGGGAGTTGGGTAAAGCAA 58.846 50.000 0.00 0.00 0.00 3.91
1 2 1.154430 AAGGGGAGTTGGGTAAAGCA 58.846 50.000 0.00 0.00 0.00 3.91
2 3 2.304221 AAAGGGGAGTTGGGTAAAGC 57.696 50.000 0.00 0.00 0.00 3.51
3 4 4.219919 TCAAAAAGGGGAGTTGGGTAAAG 58.780 43.478 0.00 0.00 0.00 1.85
4 5 4.267341 TCAAAAAGGGGAGTTGGGTAAA 57.733 40.909 0.00 0.00 0.00 2.01
5 6 3.975479 TCAAAAAGGGGAGTTGGGTAA 57.025 42.857 0.00 0.00 0.00 2.85
6 7 5.162969 TGTTATCAAAAAGGGGAGTTGGGTA 60.163 40.000 0.00 0.00 0.00 3.69
7 8 4.157246 GTTATCAAAAAGGGGAGTTGGGT 58.843 43.478 0.00 0.00 0.00 4.51
8 9 4.156477 TGTTATCAAAAAGGGGAGTTGGG 58.844 43.478 0.00 0.00 0.00 4.12
9 10 5.279456 CCTTGTTATCAAAAAGGGGAGTTGG 60.279 44.000 0.53 0.00 37.42 3.77
10 11 5.783111 CCTTGTTATCAAAAAGGGGAGTTG 58.217 41.667 0.53 0.00 37.42 3.16
11 12 4.283467 GCCTTGTTATCAAAAAGGGGAGTT 59.717 41.667 9.40 0.00 40.74 3.01
12 13 3.832490 GCCTTGTTATCAAAAAGGGGAGT 59.168 43.478 9.40 0.00 40.74 3.85
13 14 3.831911 TGCCTTGTTATCAAAAAGGGGAG 59.168 43.478 9.40 0.00 40.74 4.30
14 15 3.850752 TGCCTTGTTATCAAAAAGGGGA 58.149 40.909 9.40 0.00 40.74 4.81
15 16 4.615588 TTGCCTTGTTATCAAAAAGGGG 57.384 40.909 9.40 0.00 40.74 4.79
16 17 6.238621 GGTTTTTGCCTTGTTATCAAAAAGGG 60.239 38.462 9.40 0.00 44.90 3.95
17 18 6.542005 AGGTTTTTGCCTTGTTATCAAAAAGG 59.458 34.615 11.00 3.82 44.90 3.11
18 19 7.254761 GGAGGTTTTTGCCTTGTTATCAAAAAG 60.255 37.037 11.00 0.00 44.90 2.27
19 20 6.540551 GGAGGTTTTTGCCTTGTTATCAAAAA 59.459 34.615 7.69 7.69 43.27 1.94
20 21 6.052360 GGAGGTTTTTGCCTTGTTATCAAAA 58.948 36.000 0.00 0.00 39.34 2.44
21 22 5.606505 GGAGGTTTTTGCCTTGTTATCAAA 58.393 37.500 0.00 0.00 39.34 2.69
22 23 4.261825 CGGAGGTTTTTGCCTTGTTATCAA 60.262 41.667 0.00 0.00 39.34 2.57
23 24 3.254657 CGGAGGTTTTTGCCTTGTTATCA 59.745 43.478 0.00 0.00 39.34 2.15
24 25 3.504520 TCGGAGGTTTTTGCCTTGTTATC 59.495 43.478 0.00 0.00 39.34 1.75
25 26 3.254903 GTCGGAGGTTTTTGCCTTGTTAT 59.745 43.478 0.00 0.00 39.34 1.89
26 27 2.619646 GTCGGAGGTTTTTGCCTTGTTA 59.380 45.455 0.00 0.00 39.34 2.41
27 28 1.407618 GTCGGAGGTTTTTGCCTTGTT 59.592 47.619 0.00 0.00 39.34 2.83
28 29 1.029681 GTCGGAGGTTTTTGCCTTGT 58.970 50.000 0.00 0.00 39.34 3.16
29 30 0.313987 GGTCGGAGGTTTTTGCCTTG 59.686 55.000 0.00 0.00 39.34 3.61
30 31 0.826256 GGGTCGGAGGTTTTTGCCTT 60.826 55.000 0.00 0.00 39.34 4.35
31 32 1.228459 GGGTCGGAGGTTTTTGCCT 60.228 57.895 0.00 0.00 42.53 4.75
32 33 2.622962 CGGGTCGGAGGTTTTTGCC 61.623 63.158 0.00 0.00 0.00 4.52
33 34 1.598685 TCGGGTCGGAGGTTTTTGC 60.599 57.895 0.00 0.00 0.00 3.68
34 35 0.533308 TGTCGGGTCGGAGGTTTTTG 60.533 55.000 0.00 0.00 0.00 2.44
35 36 0.399075 ATGTCGGGTCGGAGGTTTTT 59.601 50.000 0.00 0.00 0.00 1.94
36 37 0.399075 AATGTCGGGTCGGAGGTTTT 59.601 50.000 0.00 0.00 0.00 2.43
37 38 0.036671 GAATGTCGGGTCGGAGGTTT 60.037 55.000 0.00 0.00 0.00 3.27
38 39 1.189524 TGAATGTCGGGTCGGAGGTT 61.190 55.000 0.00 0.00 0.00 3.50
39 40 0.976073 ATGAATGTCGGGTCGGAGGT 60.976 55.000 0.00 0.00 0.00 3.85
40 41 0.530650 CATGAATGTCGGGTCGGAGG 60.531 60.000 0.00 0.00 0.00 4.30
41 42 0.459899 TCATGAATGTCGGGTCGGAG 59.540 55.000 0.00 0.00 0.00 4.63
42 43 0.459899 CTCATGAATGTCGGGTCGGA 59.540 55.000 0.00 0.00 0.00 4.55
43 44 0.175760 ACTCATGAATGTCGGGTCGG 59.824 55.000 0.00 0.00 0.00 4.79
44 45 2.010145 AACTCATGAATGTCGGGTCG 57.990 50.000 0.00 0.00 0.00 4.79
45 46 2.348666 CGAAACTCATGAATGTCGGGTC 59.651 50.000 8.87 0.00 0.00 4.46
46 47 2.028476 TCGAAACTCATGAATGTCGGGT 60.028 45.455 16.13 0.00 0.00 5.28
47 48 2.616960 TCGAAACTCATGAATGTCGGG 58.383 47.619 16.13 0.00 0.00 5.14
48 49 4.329801 TCATTCGAAACTCATGAATGTCGG 59.670 41.667 16.13 1.43 45.69 4.79
49 50 5.454736 TCATTCGAAACTCATGAATGTCG 57.545 39.130 10.46 10.46 45.69 4.35
50 51 7.065216 TCTTCATTCGAAACTCATGAATGTC 57.935 36.000 10.62 0.00 45.69 3.06
51 52 7.439157 TTCTTCATTCGAAACTCATGAATGT 57.561 32.000 10.62 0.00 45.69 2.71
52 53 8.179615 TCATTCTTCATTCGAAACTCATGAATG 58.820 33.333 21.85 21.85 46.47 2.67
53 54 8.272545 TCATTCTTCATTCGAAACTCATGAAT 57.727 30.769 10.62 9.12 36.55 2.57
54 55 7.671495 TCATTCTTCATTCGAAACTCATGAA 57.329 32.000 0.00 6.45 35.93 2.57
55 56 7.603784 TCTTCATTCTTCATTCGAAACTCATGA 59.396 33.333 0.00 0.00 0.00 3.07
56 57 7.745972 TCTTCATTCTTCATTCGAAACTCATG 58.254 34.615 0.00 0.00 0.00 3.07
57 58 7.605691 ACTCTTCATTCTTCATTCGAAACTCAT 59.394 33.333 0.00 0.00 0.00 2.90
58 59 6.931281 ACTCTTCATTCTTCATTCGAAACTCA 59.069 34.615 0.00 0.00 0.00 3.41
59 60 7.232994 CACTCTTCATTCTTCATTCGAAACTC 58.767 38.462 0.00 0.00 0.00 3.01
60 61 6.348050 GCACTCTTCATTCTTCATTCGAAACT 60.348 38.462 0.00 0.00 0.00 2.66
61 62 5.792468 GCACTCTTCATTCTTCATTCGAAAC 59.208 40.000 0.00 0.00 0.00 2.78
62 63 5.106555 GGCACTCTTCATTCTTCATTCGAAA 60.107 40.000 0.00 0.00 0.00 3.46
63 64 4.393062 GGCACTCTTCATTCTTCATTCGAA 59.607 41.667 0.00 0.00 0.00 3.71
64 65 3.935203 GGCACTCTTCATTCTTCATTCGA 59.065 43.478 0.00 0.00 0.00 3.71
65 66 3.064545 GGGCACTCTTCATTCTTCATTCG 59.935 47.826 0.00 0.00 0.00 3.34
66 67 4.096081 CAGGGCACTCTTCATTCTTCATTC 59.904 45.833 0.00 0.00 0.00 2.67
67 68 4.015084 CAGGGCACTCTTCATTCTTCATT 58.985 43.478 0.00 0.00 0.00 2.57
68 69 3.618351 CAGGGCACTCTTCATTCTTCAT 58.382 45.455 0.00 0.00 0.00 2.57
69 70 2.877300 GCAGGGCACTCTTCATTCTTCA 60.877 50.000 0.00 0.00 0.00 3.02
70 71 1.742268 GCAGGGCACTCTTCATTCTTC 59.258 52.381 0.00 0.00 0.00 2.87
71 72 1.615384 GGCAGGGCACTCTTCATTCTT 60.615 52.381 0.00 0.00 0.00 2.52
72 73 0.034670 GGCAGGGCACTCTTCATTCT 60.035 55.000 0.00 0.00 0.00 2.40
73 74 1.034292 GGGCAGGGCACTCTTCATTC 61.034 60.000 0.00 0.00 0.00 2.67
74 75 1.000396 GGGCAGGGCACTCTTCATT 60.000 57.895 0.00 0.00 0.00 2.57
75 76 2.679716 GGGCAGGGCACTCTTCAT 59.320 61.111 0.00 0.00 0.00 2.57
76 77 3.650950 GGGGCAGGGCACTCTTCA 61.651 66.667 0.00 0.00 29.71 3.02
77 78 3.334054 AGGGGCAGGGCACTCTTC 61.334 66.667 0.00 0.00 29.71 2.87
78 79 3.334054 GAGGGGCAGGGCACTCTT 61.334 66.667 16.96 0.00 33.48 2.85
79 80 3.880033 AAGAGGGGCAGGGCACTCT 62.880 63.158 20.62 20.62 42.88 3.24
80 81 2.432174 AAAAGAGGGGCAGGGCACTC 62.432 60.000 16.56 16.56 35.41 3.51
81 82 2.023760 AAAAAGAGGGGCAGGGCACT 62.024 55.000 0.00 0.00 29.71 4.40
82 83 1.533994 AAAAAGAGGGGCAGGGCAC 60.534 57.895 0.00 0.00 0.00 5.01
83 84 2.942608 AAAAAGAGGGGCAGGGCA 59.057 55.556 0.00 0.00 0.00 5.36
101 102 6.139679 ACTTCCAAGTCCAAGATTTATGGA 57.860 37.500 0.00 0.00 44.58 3.41
102 103 6.350445 CCAACTTCCAAGTCCAAGATTTATGG 60.350 42.308 0.00 0.00 38.57 2.74
103 104 6.209391 ACCAACTTCCAAGTCCAAGATTTATG 59.791 38.462 0.00 0.00 38.57 1.90
104 105 6.314917 ACCAACTTCCAAGTCCAAGATTTAT 58.685 36.000 0.00 0.00 38.57 1.40
105 106 5.701224 ACCAACTTCCAAGTCCAAGATTTA 58.299 37.500 0.00 0.00 38.57 1.40
106 107 4.546674 ACCAACTTCCAAGTCCAAGATTT 58.453 39.130 0.00 0.00 38.57 2.17
107 108 4.184649 ACCAACTTCCAAGTCCAAGATT 57.815 40.909 0.00 0.00 38.57 2.40
108 109 3.884037 ACCAACTTCCAAGTCCAAGAT 57.116 42.857 0.00 0.00 38.57 2.40
109 110 4.781775 TTACCAACTTCCAAGTCCAAGA 57.218 40.909 0.00 0.00 38.57 3.02
110 111 5.008712 GTCTTTACCAACTTCCAAGTCCAAG 59.991 44.000 0.00 0.00 38.57 3.61
111 112 4.885325 GTCTTTACCAACTTCCAAGTCCAA 59.115 41.667 0.00 0.00 38.57 3.53
112 113 4.457466 GTCTTTACCAACTTCCAAGTCCA 58.543 43.478 0.00 0.00 38.57 4.02
113 114 3.819337 GGTCTTTACCAACTTCCAAGTCC 59.181 47.826 0.00 0.00 45.98 3.85
126 127 0.775542 ACAAGGGGTGGGTCTTTACC 59.224 55.000 0.00 0.00 45.97 2.85
127 128 2.670019 AACAAGGGGTGGGTCTTTAC 57.330 50.000 0.00 0.00 0.00 2.01
128 129 4.168479 ACTTAAACAAGGGGTGGGTCTTTA 59.832 41.667 0.00 0.00 0.00 1.85
129 130 3.052414 ACTTAAACAAGGGGTGGGTCTTT 60.052 43.478 0.00 0.00 0.00 2.52
130 131 2.516702 ACTTAAACAAGGGGTGGGTCTT 59.483 45.455 0.00 0.00 0.00 3.01
131 132 2.107726 GACTTAAACAAGGGGTGGGTCT 59.892 50.000 0.00 0.00 0.00 3.85
132 133 2.158579 TGACTTAAACAAGGGGTGGGTC 60.159 50.000 0.00 0.00 0.00 4.46
133 134 1.854280 TGACTTAAACAAGGGGTGGGT 59.146 47.619 0.00 0.00 0.00 4.51
134 135 2.107552 TCTGACTTAAACAAGGGGTGGG 59.892 50.000 0.00 0.00 0.00 4.61
135 136 3.502123 TCTGACTTAAACAAGGGGTGG 57.498 47.619 0.00 0.00 0.00 4.61
136 137 5.070001 TCATTCTGACTTAAACAAGGGGTG 58.930 41.667 0.00 0.00 0.00 4.61
137 138 5.163088 ACTCATTCTGACTTAAACAAGGGGT 60.163 40.000 0.00 0.00 0.00 4.95
138 139 5.316987 ACTCATTCTGACTTAAACAAGGGG 58.683 41.667 0.00 0.00 0.00 4.79
139 140 5.412904 GGACTCATTCTGACTTAAACAAGGG 59.587 44.000 0.00 0.00 0.00 3.95
140 141 6.234177 AGGACTCATTCTGACTTAAACAAGG 58.766 40.000 0.00 0.00 0.00 3.61
141 142 6.090088 CGAGGACTCATTCTGACTTAAACAAG 59.910 42.308 0.00 0.00 0.00 3.16
142 143 5.926542 CGAGGACTCATTCTGACTTAAACAA 59.073 40.000 0.00 0.00 0.00 2.83
143 144 5.243060 TCGAGGACTCATTCTGACTTAAACA 59.757 40.000 0.00 0.00 0.00 2.83
144 145 5.710984 TCGAGGACTCATTCTGACTTAAAC 58.289 41.667 0.00 0.00 0.00 2.01
145 146 5.710567 TCTCGAGGACTCATTCTGACTTAAA 59.289 40.000 13.56 0.00 0.00 1.52
146 147 5.124138 GTCTCGAGGACTCATTCTGACTTAA 59.876 44.000 13.56 0.00 41.46 1.85
147 148 4.636648 GTCTCGAGGACTCATTCTGACTTA 59.363 45.833 13.56 0.00 41.46 2.24
148 149 3.442273 GTCTCGAGGACTCATTCTGACTT 59.558 47.826 13.56 0.00 41.46 3.01
149 150 3.013921 GTCTCGAGGACTCATTCTGACT 58.986 50.000 13.56 0.00 41.46 3.41
150 151 2.750166 TGTCTCGAGGACTCATTCTGAC 59.250 50.000 13.56 0.00 44.74 3.51
151 152 3.073274 TGTCTCGAGGACTCATTCTGA 57.927 47.619 13.56 0.00 44.74 3.27
152 153 4.111198 CAATGTCTCGAGGACTCATTCTG 58.889 47.826 13.56 5.61 44.74 3.02
153 154 3.131933 CCAATGTCTCGAGGACTCATTCT 59.868 47.826 13.56 0.00 44.74 2.40
154 155 3.452474 CCAATGTCTCGAGGACTCATTC 58.548 50.000 13.56 0.00 44.74 2.67
155 156 2.419297 GCCAATGTCTCGAGGACTCATT 60.419 50.000 13.56 14.46 44.74 2.57
156 157 1.137872 GCCAATGTCTCGAGGACTCAT 59.862 52.381 13.56 9.59 44.74 2.90
157 158 0.532573 GCCAATGTCTCGAGGACTCA 59.467 55.000 13.56 7.69 44.74 3.41
158 159 0.820871 AGCCAATGTCTCGAGGACTC 59.179 55.000 13.56 1.98 44.74 3.36
159 160 1.270907 AAGCCAATGTCTCGAGGACT 58.729 50.000 13.56 0.00 44.74 3.85
160 161 2.003301 GAAAGCCAATGTCTCGAGGAC 58.997 52.381 13.56 10.07 44.70 3.85
161 162 1.404181 CGAAAGCCAATGTCTCGAGGA 60.404 52.381 13.56 0.00 0.00 3.71
162 163 1.002366 CGAAAGCCAATGTCTCGAGG 58.998 55.000 13.56 0.00 0.00 4.63
176 177 4.749245 AATAGTTCACTGTTGGCGAAAG 57.251 40.909 0.00 0.00 0.00 2.62
177 178 5.180492 CCTTAATAGTTCACTGTTGGCGAAA 59.820 40.000 0.00 0.00 0.00 3.46
178 179 4.693566 CCTTAATAGTTCACTGTTGGCGAA 59.306 41.667 0.00 0.00 0.00 4.70
179 180 4.020928 TCCTTAATAGTTCACTGTTGGCGA 60.021 41.667 0.00 0.00 0.00 5.54
180 181 4.250464 TCCTTAATAGTTCACTGTTGGCG 58.750 43.478 0.00 0.00 0.00 5.69
181 182 5.006746 CGATCCTTAATAGTTCACTGTTGGC 59.993 44.000 0.00 0.00 0.00 4.52
182 183 5.006746 GCGATCCTTAATAGTTCACTGTTGG 59.993 44.000 0.00 0.00 0.00 3.77
183 184 5.580691 TGCGATCCTTAATAGTTCACTGTTG 59.419 40.000 0.00 0.00 0.00 3.33
184 185 5.730550 TGCGATCCTTAATAGTTCACTGTT 58.269 37.500 0.00 0.00 0.00 3.16
185 186 5.339008 TGCGATCCTTAATAGTTCACTGT 57.661 39.130 0.00 0.00 0.00 3.55
186 187 5.406780 GGATGCGATCCTTAATAGTTCACTG 59.593 44.000 7.65 0.00 46.19 3.66
187 188 5.542779 GGATGCGATCCTTAATAGTTCACT 58.457 41.667 7.65 0.00 46.19 3.41
188 189 5.847670 GGATGCGATCCTTAATAGTTCAC 57.152 43.478 7.65 0.00 46.19 3.18
205 206 0.721718 GTAGAATATGCGCGGGATGC 59.278 55.000 8.83 0.00 41.47 3.91
206 207 2.078849 TGTAGAATATGCGCGGGATG 57.921 50.000 8.83 0.00 0.00 3.51
207 208 3.334583 AATGTAGAATATGCGCGGGAT 57.665 42.857 8.83 0.00 0.00 3.85
208 209 2.831685 AATGTAGAATATGCGCGGGA 57.168 45.000 8.83 0.00 0.00 5.14
209 210 4.209288 GCTATAATGTAGAATATGCGCGGG 59.791 45.833 8.83 0.00 0.00 6.13
210 211 4.209288 GGCTATAATGTAGAATATGCGCGG 59.791 45.833 8.83 0.00 0.00 6.46
211 212 5.043903 AGGCTATAATGTAGAATATGCGCG 58.956 41.667 0.00 0.00 0.00 6.86
212 213 5.277058 GCAGGCTATAATGTAGAATATGCGC 60.277 44.000 0.00 0.00 0.00 6.09
213 214 5.812127 TGCAGGCTATAATGTAGAATATGCG 59.188 40.000 0.00 0.00 0.00 4.73
214 215 7.335422 AGTTGCAGGCTATAATGTAGAATATGC 59.665 37.037 0.00 0.00 0.00 3.14
215 216 8.783833 AGTTGCAGGCTATAATGTAGAATATG 57.216 34.615 0.00 0.00 0.00 1.78
218 219 9.799106 AATTAGTTGCAGGCTATAATGTAGAAT 57.201 29.630 0.00 0.00 0.00 2.40
219 220 9.273016 GAATTAGTTGCAGGCTATAATGTAGAA 57.727 33.333 0.00 0.00 0.00 2.10
220 221 8.428852 TGAATTAGTTGCAGGCTATAATGTAGA 58.571 33.333 0.00 0.00 0.00 2.59
221 222 8.607441 TGAATTAGTTGCAGGCTATAATGTAG 57.393 34.615 0.00 0.00 0.00 2.74
222 223 7.173218 GCTGAATTAGTTGCAGGCTATAATGTA 59.827 37.037 0.00 0.00 0.00 2.29
223 224 6.016777 GCTGAATTAGTTGCAGGCTATAATGT 60.017 38.462 0.00 0.00 0.00 2.71
224 225 6.206243 AGCTGAATTAGTTGCAGGCTATAATG 59.794 38.462 0.00 0.00 0.00 1.90
225 226 6.302269 AGCTGAATTAGTTGCAGGCTATAAT 58.698 36.000 0.00 0.00 0.00 1.28
226 227 5.684704 AGCTGAATTAGTTGCAGGCTATAA 58.315 37.500 0.00 0.00 0.00 0.98
227 228 5.296151 AGCTGAATTAGTTGCAGGCTATA 57.704 39.130 0.00 0.00 0.00 1.31
228 229 4.162040 AGCTGAATTAGTTGCAGGCTAT 57.838 40.909 0.00 0.00 0.00 2.97
229 230 3.634397 AGCTGAATTAGTTGCAGGCTA 57.366 42.857 0.00 0.00 0.00 3.93
230 231 2.503895 AGCTGAATTAGTTGCAGGCT 57.496 45.000 0.00 0.00 0.00 4.58
231 232 2.159324 GGAAGCTGAATTAGTTGCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
232 233 2.096496 CGGAAGCTGAATTAGTTGCAGG 59.904 50.000 0.00 0.00 0.00 4.85
233 234 3.395858 CGGAAGCTGAATTAGTTGCAG 57.604 47.619 0.00 0.00 0.00 4.41
247 248 4.992687 CTGATCTCCCAGAAGCGGAAGC 62.993 59.091 0.00 0.00 46.93 3.86
248 249 0.826715 TGATCTCCCAGAAGCGGAAG 59.173 55.000 0.00 0.00 0.00 3.46
249 250 0.826715 CTGATCTCCCAGAAGCGGAA 59.173 55.000 0.00 0.00 36.29 4.30
250 251 0.033109 TCTGATCTCCCAGAAGCGGA 60.033 55.000 0.00 0.00 39.96 5.54
251 252 0.103937 GTCTGATCTCCCAGAAGCGG 59.896 60.000 0.00 0.00 43.94 5.52
252 253 0.248825 CGTCTGATCTCCCAGAAGCG 60.249 60.000 0.00 0.00 43.94 4.68
253 254 0.103937 CCGTCTGATCTCCCAGAAGC 59.896 60.000 0.00 0.00 43.94 3.86
254 255 1.680735 CTCCGTCTGATCTCCCAGAAG 59.319 57.143 0.00 0.00 43.94 2.85
255 256 1.769026 CTCCGTCTGATCTCCCAGAA 58.231 55.000 0.00 0.00 43.94 3.02
256 257 0.753479 GCTCCGTCTGATCTCCCAGA 60.753 60.000 0.00 0.00 40.57 3.86
257 258 0.754957 AGCTCCGTCTGATCTCCCAG 60.755 60.000 0.00 0.00 35.55 4.45
258 259 0.753479 GAGCTCCGTCTGATCTCCCA 60.753 60.000 0.87 0.00 31.37 4.37
259 260 1.791103 CGAGCTCCGTCTGATCTCCC 61.791 65.000 8.47 0.00 33.54 4.30
260 261 0.816018 TCGAGCTCCGTCTGATCTCC 60.816 60.000 8.47 0.00 33.54 3.71
261 262 1.234821 ATCGAGCTCCGTCTGATCTC 58.765 55.000 8.47 0.00 39.75 2.75
262 263 1.686355 AATCGAGCTCCGTCTGATCT 58.314 50.000 8.47 0.00 39.75 2.75
263 264 2.550606 ACTAATCGAGCTCCGTCTGATC 59.449 50.000 8.47 0.00 39.75 2.92
264 265 2.577700 ACTAATCGAGCTCCGTCTGAT 58.422 47.619 8.47 1.41 39.75 2.90
265 266 2.039818 ACTAATCGAGCTCCGTCTGA 57.960 50.000 8.47 0.00 39.75 3.27
266 267 2.853731 AACTAATCGAGCTCCGTCTG 57.146 50.000 8.47 0.00 39.75 3.51
267 268 3.018149 AGAAACTAATCGAGCTCCGTCT 58.982 45.455 8.47 0.00 39.75 4.18
268 269 3.109619 CAGAAACTAATCGAGCTCCGTC 58.890 50.000 8.47 0.00 39.75 4.79
269 270 2.735762 GCAGAAACTAATCGAGCTCCGT 60.736 50.000 8.47 0.00 39.75 4.69
270 271 1.855360 GCAGAAACTAATCGAGCTCCG 59.145 52.381 8.47 3.57 40.25 4.63
271 272 3.172229 AGCAGAAACTAATCGAGCTCC 57.828 47.619 8.47 0.00 32.58 4.70
272 273 4.973663 GTCTAGCAGAAACTAATCGAGCTC 59.026 45.833 2.73 2.73 37.03 4.09
273 274 4.496673 CGTCTAGCAGAAACTAATCGAGCT 60.497 45.833 0.00 0.00 38.50 4.09
274 275 3.726730 CGTCTAGCAGAAACTAATCGAGC 59.273 47.826 0.00 0.00 0.00 5.03
275 276 5.158101 TCGTCTAGCAGAAACTAATCGAG 57.842 43.478 0.00 0.00 0.00 4.04
276 277 4.035324 CCTCGTCTAGCAGAAACTAATCGA 59.965 45.833 0.00 0.00 0.00 3.59
277 278 4.035324 TCCTCGTCTAGCAGAAACTAATCG 59.965 45.833 0.00 0.00 0.00 3.34
278 279 5.502153 TCCTCGTCTAGCAGAAACTAATC 57.498 43.478 0.00 0.00 0.00 1.75
279 280 5.916661 TTCCTCGTCTAGCAGAAACTAAT 57.083 39.130 0.00 0.00 0.00 1.73
280 281 5.916661 ATTCCTCGTCTAGCAGAAACTAA 57.083 39.130 0.00 0.00 0.00 2.24
281 282 6.039493 CCTTATTCCTCGTCTAGCAGAAACTA 59.961 42.308 0.00 0.00 0.00 2.24
282 283 5.163499 CCTTATTCCTCGTCTAGCAGAAACT 60.163 44.000 0.00 0.00 0.00 2.66
283 284 5.044558 CCTTATTCCTCGTCTAGCAGAAAC 58.955 45.833 0.00 0.00 0.00 2.78
284 285 4.954202 TCCTTATTCCTCGTCTAGCAGAAA 59.046 41.667 0.00 0.00 0.00 2.52
285 286 4.533815 TCCTTATTCCTCGTCTAGCAGAA 58.466 43.478 0.00 0.00 0.00 3.02
286 287 4.166246 TCCTTATTCCTCGTCTAGCAGA 57.834 45.455 0.00 0.00 0.00 4.26
287 288 4.098044 TGTTCCTTATTCCTCGTCTAGCAG 59.902 45.833 0.00 0.00 0.00 4.24
288 289 4.021229 TGTTCCTTATTCCTCGTCTAGCA 58.979 43.478 0.00 0.00 0.00 3.49
289 290 4.650754 TGTTCCTTATTCCTCGTCTAGC 57.349 45.455 0.00 0.00 0.00 3.42
290 291 7.146648 GGTTATGTTCCTTATTCCTCGTCTAG 58.853 42.308 0.00 0.00 0.00 2.43
291 292 6.608405 TGGTTATGTTCCTTATTCCTCGTCTA 59.392 38.462 0.00 0.00 0.00 2.59
292 293 5.424252 TGGTTATGTTCCTTATTCCTCGTCT 59.576 40.000 0.00 0.00 0.00 4.18
293 294 5.667466 TGGTTATGTTCCTTATTCCTCGTC 58.333 41.667 0.00 0.00 0.00 4.20
294 295 5.687166 TGGTTATGTTCCTTATTCCTCGT 57.313 39.130 0.00 0.00 0.00 4.18
295 296 7.713507 TGTATTGGTTATGTTCCTTATTCCTCG 59.286 37.037 0.00 0.00 0.00 4.63
296 297 8.974060 TGTATTGGTTATGTTCCTTATTCCTC 57.026 34.615 0.00 0.00 0.00 3.71
297 298 7.998964 CCTGTATTGGTTATGTTCCTTATTCCT 59.001 37.037 0.00 0.00 0.00 3.36
298 299 7.230712 CCCTGTATTGGTTATGTTCCTTATTCC 59.769 40.741 0.00 0.00 0.00 3.01
299 300 7.996644 TCCCTGTATTGGTTATGTTCCTTATTC 59.003 37.037 0.00 0.00 0.00 1.75
300 301 7.878495 TCCCTGTATTGGTTATGTTCCTTATT 58.122 34.615 0.00 0.00 0.00 1.40
301 302 7.460214 TCCCTGTATTGGTTATGTTCCTTAT 57.540 36.000 0.00 0.00 0.00 1.73
302 303 6.894735 TCCCTGTATTGGTTATGTTCCTTA 57.105 37.500 0.00 0.00 0.00 2.69
303 304 5.789574 TCCCTGTATTGGTTATGTTCCTT 57.210 39.130 0.00 0.00 0.00 3.36
304 305 5.014755 TGTTCCCTGTATTGGTTATGTTCCT 59.985 40.000 0.00 0.00 0.00 3.36
305 306 5.258051 TGTTCCCTGTATTGGTTATGTTCC 58.742 41.667 0.00 0.00 0.00 3.62
306 307 6.127730 CCTTGTTCCCTGTATTGGTTATGTTC 60.128 42.308 0.00 0.00 0.00 3.18
307 308 5.714806 CCTTGTTCCCTGTATTGGTTATGTT 59.285 40.000 0.00 0.00 0.00 2.71
308 309 5.261216 CCTTGTTCCCTGTATTGGTTATGT 58.739 41.667 0.00 0.00 0.00 2.29
309 310 4.644685 CCCTTGTTCCCTGTATTGGTTATG 59.355 45.833 0.00 0.00 0.00 1.90
310 311 4.542525 TCCCTTGTTCCCTGTATTGGTTAT 59.457 41.667 0.00 0.00 0.00 1.89
311 312 3.917629 TCCCTTGTTCCCTGTATTGGTTA 59.082 43.478 0.00 0.00 0.00 2.85
312 313 2.719705 TCCCTTGTTCCCTGTATTGGTT 59.280 45.455 0.00 0.00 0.00 3.67
313 314 2.354328 TCCCTTGTTCCCTGTATTGGT 58.646 47.619 0.00 0.00 0.00 3.67
314 315 3.449746 TTCCCTTGTTCCCTGTATTGG 57.550 47.619 0.00 0.00 0.00 3.16
315 316 4.887655 GGTATTCCCTTGTTCCCTGTATTG 59.112 45.833 0.00 0.00 0.00 1.90
316 317 4.384868 CGGTATTCCCTTGTTCCCTGTATT 60.385 45.833 0.00 0.00 0.00 1.89
317 318 3.135895 CGGTATTCCCTTGTTCCCTGTAT 59.864 47.826 0.00 0.00 0.00 2.29
318 319 2.502538 CGGTATTCCCTTGTTCCCTGTA 59.497 50.000 0.00 0.00 0.00 2.74
319 320 1.280998 CGGTATTCCCTTGTTCCCTGT 59.719 52.381 0.00 0.00 0.00 4.00
320 321 1.408266 CCGGTATTCCCTTGTTCCCTG 60.408 57.143 0.00 0.00 0.00 4.45
321 322 0.916809 CCGGTATTCCCTTGTTCCCT 59.083 55.000 0.00 0.00 0.00 4.20
322 323 0.913924 TCCGGTATTCCCTTGTTCCC 59.086 55.000 0.00 0.00 0.00 3.97
323 324 1.407851 GGTCCGGTATTCCCTTGTTCC 60.408 57.143 0.00 0.00 0.00 3.62
324 325 1.279846 TGGTCCGGTATTCCCTTGTTC 59.720 52.381 0.00 0.00 0.00 3.18
325 326 1.364269 TGGTCCGGTATTCCCTTGTT 58.636 50.000 0.00 0.00 0.00 2.83
326 327 1.591768 ATGGTCCGGTATTCCCTTGT 58.408 50.000 0.00 0.00 0.00 3.16
327 328 3.583086 AGATATGGTCCGGTATTCCCTTG 59.417 47.826 0.00 0.00 0.00 3.61
328 329 3.583086 CAGATATGGTCCGGTATTCCCTT 59.417 47.826 0.00 0.00 0.00 3.95
329 330 3.173965 CAGATATGGTCCGGTATTCCCT 58.826 50.000 0.00 0.00 0.00 4.20
330 331 2.354805 GCAGATATGGTCCGGTATTCCC 60.355 54.545 0.00 0.00 0.00 3.97
331 332 2.567615 AGCAGATATGGTCCGGTATTCC 59.432 50.000 0.00 0.87 0.00 3.01
332 333 3.963428 AGCAGATATGGTCCGGTATTC 57.037 47.619 0.00 0.00 0.00 1.75
333 334 4.706842 AAAGCAGATATGGTCCGGTATT 57.293 40.909 0.00 0.00 0.00 1.89
334 335 4.389374 CAAAAGCAGATATGGTCCGGTAT 58.611 43.478 0.00 0.00 0.00 2.73
335 336 3.804036 CAAAAGCAGATATGGTCCGGTA 58.196 45.455 0.00 0.00 0.00 4.02
336 337 2.643551 CAAAAGCAGATATGGTCCGGT 58.356 47.619 0.00 0.00 0.00 5.28
337 338 1.334869 GCAAAAGCAGATATGGTCCGG 59.665 52.381 0.00 0.00 0.00 5.14
338 339 1.003545 CGCAAAAGCAGATATGGTCCG 60.004 52.381 0.00 0.00 0.00 4.79
339 340 1.268743 GCGCAAAAGCAGATATGGTCC 60.269 52.381 0.30 0.00 37.05 4.46
340 341 1.268743 GGCGCAAAAGCAGATATGGTC 60.269 52.381 10.83 0.00 39.27 4.02
341 342 0.740737 GGCGCAAAAGCAGATATGGT 59.259 50.000 10.83 0.00 39.27 3.55
342 343 0.740149 TGGCGCAAAAGCAGATATGG 59.260 50.000 10.83 0.00 39.27 2.74
343 344 2.033675 TCATGGCGCAAAAGCAGATATG 59.966 45.455 10.83 0.00 39.27 1.78
344 345 2.033801 GTCATGGCGCAAAAGCAGATAT 59.966 45.455 10.83 0.00 39.27 1.63
345 346 1.401552 GTCATGGCGCAAAAGCAGATA 59.598 47.619 10.83 0.00 39.27 1.98
346 347 0.171903 GTCATGGCGCAAAAGCAGAT 59.828 50.000 10.83 0.00 39.27 2.90
347 348 1.171549 TGTCATGGCGCAAAAGCAGA 61.172 50.000 10.83 0.00 39.27 4.26
348 349 0.318869 TTGTCATGGCGCAAAAGCAG 60.319 50.000 10.83 0.00 39.27 4.24
349 350 0.317799 ATTGTCATGGCGCAAAAGCA 59.682 45.000 10.83 0.00 39.27 3.91
350 351 0.994263 GATTGTCATGGCGCAAAAGC 59.006 50.000 10.83 0.00 0.00 3.51
351 352 2.095110 TGAGATTGTCATGGCGCAAAAG 60.095 45.455 10.83 0.00 0.00 2.27
352 353 1.885233 TGAGATTGTCATGGCGCAAAA 59.115 42.857 10.83 0.00 0.00 2.44
353 354 1.199789 GTGAGATTGTCATGGCGCAAA 59.800 47.619 10.83 0.00 37.56 3.68
354 355 0.804364 GTGAGATTGTCATGGCGCAA 59.196 50.000 10.83 0.00 37.56 4.85
355 356 0.036105 AGTGAGATTGTCATGGCGCA 60.036 50.000 10.83 0.00 37.56 6.09
356 357 0.654683 GAGTGAGATTGTCATGGCGC 59.345 55.000 0.00 0.00 37.56 6.53
357 358 0.926155 CGAGTGAGATTGTCATGGCG 59.074 55.000 0.00 0.00 37.56 5.69
358 359 2.299993 TCGAGTGAGATTGTCATGGC 57.700 50.000 0.00 0.00 37.56 4.40
359 360 5.812127 TGTATTTCGAGTGAGATTGTCATGG 59.188 40.000 0.00 0.00 37.56 3.66
360 361 6.019237 CCTGTATTTCGAGTGAGATTGTCATG 60.019 42.308 0.00 0.00 37.56 3.07
361 362 6.045318 CCTGTATTTCGAGTGAGATTGTCAT 58.955 40.000 0.00 0.00 37.56 3.06
362 363 5.410924 CCTGTATTTCGAGTGAGATTGTCA 58.589 41.667 0.00 0.00 0.00 3.58
363 364 4.806247 CCCTGTATTTCGAGTGAGATTGTC 59.194 45.833 0.00 0.00 0.00 3.18
364 365 4.466370 TCCCTGTATTTCGAGTGAGATTGT 59.534 41.667 0.00 0.00 0.00 2.71
365 366 4.806247 GTCCCTGTATTTCGAGTGAGATTG 59.194 45.833 0.00 0.00 0.00 2.67
366 367 4.141914 GGTCCCTGTATTTCGAGTGAGATT 60.142 45.833 0.00 0.00 0.00 2.40
367 368 3.385111 GGTCCCTGTATTTCGAGTGAGAT 59.615 47.826 0.00 0.00 0.00 2.75
368 369 2.758979 GGTCCCTGTATTTCGAGTGAGA 59.241 50.000 0.00 0.00 0.00 3.27
369 370 2.479730 CGGTCCCTGTATTTCGAGTGAG 60.480 54.545 0.00 0.00 0.00 3.51
370 371 1.475280 CGGTCCCTGTATTTCGAGTGA 59.525 52.381 0.00 0.00 0.00 3.41
371 372 1.475280 TCGGTCCCTGTATTTCGAGTG 59.525 52.381 0.00 0.00 0.00 3.51
372 373 1.475682 GTCGGTCCCTGTATTTCGAGT 59.524 52.381 0.00 0.00 0.00 4.18
373 374 1.475280 TGTCGGTCCCTGTATTTCGAG 59.525 52.381 0.00 0.00 0.00 4.04
374 375 1.203052 GTGTCGGTCCCTGTATTTCGA 59.797 52.381 0.00 0.00 0.00 3.71
375 376 1.067425 TGTGTCGGTCCCTGTATTTCG 60.067 52.381 0.00 0.00 0.00 3.46
376 377 2.754946 TGTGTCGGTCCCTGTATTTC 57.245 50.000 0.00 0.00 0.00 2.17
377 378 5.367945 AATATGTGTCGGTCCCTGTATTT 57.632 39.130 0.00 0.00 0.00 1.40
378 379 5.601313 ACTAATATGTGTCGGTCCCTGTATT 59.399 40.000 0.00 0.00 0.00 1.89
379 380 5.145564 ACTAATATGTGTCGGTCCCTGTAT 58.854 41.667 0.00 0.00 0.00 2.29
380 381 4.539726 ACTAATATGTGTCGGTCCCTGTA 58.460 43.478 0.00 0.00 0.00 2.74
381 382 3.371965 ACTAATATGTGTCGGTCCCTGT 58.628 45.455 0.00 0.00 0.00 4.00
382 383 4.340097 TGTACTAATATGTGTCGGTCCCTG 59.660 45.833 0.00 0.00 0.00 4.45
383 384 4.539726 TGTACTAATATGTGTCGGTCCCT 58.460 43.478 0.00 0.00 0.00 4.20
384 385 4.340381 ACTGTACTAATATGTGTCGGTCCC 59.660 45.833 0.00 0.00 0.00 4.46
385 386 5.511234 ACTGTACTAATATGTGTCGGTCC 57.489 43.478 0.00 0.00 0.00 4.46
386 387 8.233190 GGTATACTGTACTAATATGTGTCGGTC 58.767 40.741 2.25 0.00 0.00 4.79
387 388 7.095060 CGGTATACTGTACTAATATGTGTCGGT 60.095 40.741 3.31 0.00 0.00 4.69
388 389 7.239271 CGGTATACTGTACTAATATGTGTCGG 58.761 42.308 3.31 0.00 0.00 4.79
389 390 7.239271 CCGGTATACTGTACTAATATGTGTCG 58.761 42.308 10.79 0.00 0.00 4.35
390 391 7.362401 CCCCGGTATACTGTACTAATATGTGTC 60.362 44.444 10.79 0.00 0.00 3.67
391 392 6.435277 CCCCGGTATACTGTACTAATATGTGT 59.565 42.308 10.79 0.00 0.00 3.72
392 393 6.435277 ACCCCGGTATACTGTACTAATATGTG 59.565 42.308 10.79 0.00 0.00 3.21
393 394 6.555711 ACCCCGGTATACTGTACTAATATGT 58.444 40.000 10.79 0.00 0.00 2.29
394 395 6.096001 GGACCCCGGTATACTGTACTAATATG 59.904 46.154 10.79 0.00 0.00 1.78
395 396 6.190587 GGACCCCGGTATACTGTACTAATAT 58.809 44.000 10.79 0.00 0.00 1.28
396 397 5.516591 GGGACCCCGGTATACTGTACTAATA 60.517 48.000 10.79 0.00 0.00 0.98
397 398 4.411013 GGACCCCGGTATACTGTACTAAT 58.589 47.826 10.79 0.00 0.00 1.73
398 399 3.436470 GGGACCCCGGTATACTGTACTAA 60.436 52.174 10.79 0.00 0.00 2.24
399 400 2.108250 GGGACCCCGGTATACTGTACTA 59.892 54.545 10.79 0.00 0.00 1.82
400 401 1.133356 GGGACCCCGGTATACTGTACT 60.133 57.143 10.79 0.00 0.00 2.73
401 402 1.133356 AGGGACCCCGGTATACTGTAC 60.133 57.143 7.00 0.90 41.95 2.90
402 403 1.133388 CAGGGACCCCGGTATACTGTA 60.133 57.143 7.00 0.00 41.95 2.74
403 404 0.398098 CAGGGACCCCGGTATACTGT 60.398 60.000 7.00 0.00 41.95 3.55
404 405 1.755393 GCAGGGACCCCGGTATACTG 61.755 65.000 7.00 4.57 41.95 2.74
405 406 1.458967 GCAGGGACCCCGGTATACT 60.459 63.158 7.00 0.00 41.95 2.12
406 407 2.514164 GGCAGGGACCCCGGTATAC 61.514 68.421 7.00 0.00 41.95 1.47
407 408 2.122725 GGCAGGGACCCCGGTATA 60.123 66.667 7.00 0.00 41.95 1.47
408 409 4.424867 TGGCAGGGACCCCGGTAT 62.425 66.667 7.00 0.00 41.95 2.73
412 413 4.410400 GTTCTGGCAGGGACCCCG 62.410 72.222 15.73 0.00 41.95 5.73
413 414 4.048470 GGTTCTGGCAGGGACCCC 62.048 72.222 22.57 1.17 0.00 4.95
414 415 3.256960 TGGTTCTGGCAGGGACCC 61.257 66.667 27.01 17.32 0.00 4.46
415 416 2.034221 GTGGTTCTGGCAGGGACC 59.966 66.667 24.87 24.87 0.00 4.46
416 417 1.600916 GTGTGGTTCTGGCAGGGAC 60.601 63.158 15.73 13.40 0.00 4.46
417 418 2.836154 GTGTGGTTCTGGCAGGGA 59.164 61.111 15.73 0.54 0.00 4.20
418 419 2.669569 CGTGTGGTTCTGGCAGGG 60.670 66.667 15.73 0.00 0.00 4.45
419 420 2.111043 ACGTGTGGTTCTGGCAGG 59.889 61.111 15.73 0.00 0.00 4.85
420 421 2.896801 GCACGTGTGGTTCTGGCAG 61.897 63.158 18.38 8.58 0.00 4.85
421 422 2.899838 GCACGTGTGGTTCTGGCA 60.900 61.111 18.38 0.00 0.00 4.92
422 423 2.392613 CTTGCACGTGTGGTTCTGGC 62.393 60.000 18.38 0.00 0.00 4.85
423 424 1.095228 ACTTGCACGTGTGGTTCTGG 61.095 55.000 18.38 2.15 0.00 3.86
424 425 0.732571 AACTTGCACGTGTGGTTCTG 59.267 50.000 18.38 3.65 0.00 3.02
425 426 1.400494 GAAACTTGCACGTGTGGTTCT 59.600 47.619 18.38 9.98 0.00 3.01
426 427 1.533129 GGAAACTTGCACGTGTGGTTC 60.533 52.381 18.38 19.40 0.00 3.62
427 428 0.454196 GGAAACTTGCACGTGTGGTT 59.546 50.000 18.38 15.65 0.00 3.67
428 429 1.381165 GGGAAACTTGCACGTGTGGT 61.381 55.000 18.38 10.57 0.00 4.16
429 430 1.101049 AGGGAAACTTGCACGTGTGG 61.101 55.000 18.38 9.93 0.00 4.17
430 431 0.029300 CAGGGAAACTTGCACGTGTG 59.971 55.000 18.38 10.33 0.00 3.82
431 432 2.404083 CAGGGAAACTTGCACGTGT 58.596 52.632 18.38 0.00 0.00 4.49
438 439 0.037975 GCCACATGCAGGGAAACTTG 60.038 55.000 2.31 0.00 40.77 3.16
439 440 0.178953 AGCCACATGCAGGGAAACTT 60.179 50.000 2.31 0.00 44.83 2.66
440 441 0.610232 GAGCCACATGCAGGGAAACT 60.610 55.000 2.31 0.00 44.83 2.66
441 442 1.885871 GAGCCACATGCAGGGAAAC 59.114 57.895 2.31 0.00 44.83 2.78
442 443 1.675310 CGAGCCACATGCAGGGAAA 60.675 57.895 2.31 0.00 44.83 3.13
443 444 2.046023 CGAGCCACATGCAGGGAA 60.046 61.111 2.31 0.00 44.83 3.97
444 445 3.315142 GACGAGCCACATGCAGGGA 62.315 63.158 2.31 0.00 44.83 4.20
445 446 2.821366 GACGAGCCACATGCAGGG 60.821 66.667 2.31 0.00 44.83 4.45
446 447 2.821366 GGACGAGCCACATGCAGG 60.821 66.667 0.00 0.00 44.83 4.85
447 448 3.190849 CGGACGAGCCACATGCAG 61.191 66.667 0.00 0.00 44.83 4.41
448 449 4.002506 ACGGACGAGCCACATGCA 62.003 61.111 0.00 0.00 44.83 3.96
449 450 3.490759 CACGGACGAGCCACATGC 61.491 66.667 0.00 0.00 41.71 4.06
450 451 3.490759 GCACGGACGAGCCACATG 61.491 66.667 2.72 0.00 35.94 3.21
451 452 2.731691 AAAGCACGGACGAGCCACAT 62.732 55.000 10.34 0.00 35.94 3.21
452 453 2.933878 AAAAGCACGGACGAGCCACA 62.934 55.000 10.34 0.00 35.94 4.17
453 454 0.947180 TAAAAGCACGGACGAGCCAC 60.947 55.000 10.34 0.00 35.94 5.01
454 455 0.036765 ATAAAAGCACGGACGAGCCA 60.037 50.000 10.34 0.00 35.94 4.75
455 456 0.651031 GATAAAAGCACGGACGAGCC 59.349 55.000 10.34 0.00 32.18 4.70
456 457 0.651031 GGATAAAAGCACGGACGAGC 59.349 55.000 6.01 6.01 0.00 5.03
457 458 0.921347 CGGATAAAAGCACGGACGAG 59.079 55.000 0.00 0.00 0.00 4.18
458 459 0.527113 TCGGATAAAAGCACGGACGA 59.473 50.000 0.00 0.00 0.00 4.20
459 460 0.921347 CTCGGATAAAAGCACGGACG 59.079 55.000 0.00 0.00 0.00 4.79
460 461 1.287425 CCTCGGATAAAAGCACGGAC 58.713 55.000 0.00 0.00 0.00 4.79
461 462 0.461339 GCCTCGGATAAAAGCACGGA 60.461 55.000 0.00 0.00 0.00 4.69
462 463 1.762222 CGCCTCGGATAAAAGCACGG 61.762 60.000 0.00 0.00 0.00 4.94
463 464 1.636340 CGCCTCGGATAAAAGCACG 59.364 57.895 0.00 0.00 0.00 5.34
464 465 1.090052 AGCGCCTCGGATAAAAGCAC 61.090 55.000 2.29 0.00 0.00 4.40
465 466 1.089481 CAGCGCCTCGGATAAAAGCA 61.089 55.000 2.29 0.00 0.00 3.91
466 467 1.643832 CAGCGCCTCGGATAAAAGC 59.356 57.895 2.29 0.00 0.00 3.51
467 468 1.643832 GCAGCGCCTCGGATAAAAG 59.356 57.895 2.29 0.00 0.00 2.27
468 469 1.817941 GGCAGCGCCTCGGATAAAA 60.818 57.895 2.29 0.00 46.69 1.52
469 470 2.203015 GGCAGCGCCTCGGATAAA 60.203 61.111 2.29 0.00 46.69 1.40
481 482 1.301009 GTATACGGAGGCAGGCAGC 60.301 63.158 0.00 0.00 44.65 5.25
482 483 1.007271 CGTATACGGAGGCAGGCAG 60.007 63.158 17.61 0.00 35.37 4.85
483 484 3.125607 CGTATACGGAGGCAGGCA 58.874 61.111 17.61 0.00 35.37 4.75
484 485 2.355956 GCGTATACGGAGGCAGGC 60.356 66.667 25.55 3.49 40.23 4.85
485 486 2.143594 GAGGCGTATACGGAGGCAGG 62.144 65.000 25.55 0.00 40.23 4.85
486 487 1.286260 GAGGCGTATACGGAGGCAG 59.714 63.158 25.55 0.00 40.23 4.85
487 488 2.549198 CGAGGCGTATACGGAGGCA 61.549 63.158 25.55 0.00 40.23 4.75
488 489 2.254651 CGAGGCGTATACGGAGGC 59.745 66.667 25.55 10.66 40.23 4.70
492 493 0.316204 ATTTCCCGAGGCGTATACGG 59.684 55.000 25.55 9.43 45.24 4.02
493 494 2.415090 CCTATTTCCCGAGGCGTATACG 60.415 54.545 20.87 20.87 43.27 3.06
494 495 2.560105 ACCTATTTCCCGAGGCGTATAC 59.440 50.000 0.00 0.00 36.17 1.47
495 496 2.821969 GACCTATTTCCCGAGGCGTATA 59.178 50.000 0.00 0.00 36.17 1.47
496 497 1.617357 GACCTATTTCCCGAGGCGTAT 59.383 52.381 0.00 0.00 36.17 3.06
497 498 1.035139 GACCTATTTCCCGAGGCGTA 58.965 55.000 0.00 0.00 36.17 4.42
511 512 4.579340 GGTGTTGTCATCTATCTCGACCTA 59.421 45.833 0.00 0.00 0.00 3.08
619 621 3.644966 TGAATGGATTAGAAAGCGGGT 57.355 42.857 0.00 0.00 0.00 5.28
623 625 6.567050 TGCAGAAATGAATGGATTAGAAAGC 58.433 36.000 0.00 0.00 0.00 3.51
630 632 4.382685 CCTGCTTGCAGAAATGAATGGATT 60.383 41.667 22.50 0.00 0.00 3.01
873 877 3.275143 TGCAATAAGGTCACCCATAACG 58.725 45.455 0.00 0.00 0.00 3.18
895 899 2.710377 ACACAAGTGCTGTCTGAAACA 58.290 42.857 0.00 0.00 35.47 2.83
897 901 4.273235 CACATACACAAGTGCTGTCTGAAA 59.727 41.667 0.00 0.00 35.47 2.69
904 908 2.485038 TGCATCACATACACAAGTGCTG 59.515 45.455 0.00 1.31 35.58 4.41
1368 1372 7.013274 CCAATATCCACTAATCGTTGTTTCCAT 59.987 37.037 0.00 0.00 0.00 3.41
1753 1757 4.815846 TGTGATCCCGTTATCAATGACATG 59.184 41.667 0.00 0.00 37.61 3.21
2054 2058 3.043999 ATTACCGAGTGGGCCCAGC 62.044 63.158 29.55 20.06 40.62 4.85
2130 2134 3.119919 CGGCAAGTCTCTTTACTCGTACT 60.120 47.826 0.00 0.00 0.00 2.73
2342 2346 1.517257 GACATGACCGAGACGCCTG 60.517 63.158 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.