Multiple sequence alignment - TraesCS1D01G257700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G257700 chr1D 100.000 2930 0 0 1 2930 350260788 350257859 0.000000e+00 5411
1 TraesCS1D01G257700 chr1D 90.960 177 12 3 978 1154 38791464 38791636 4.880000e-58 235
2 TraesCS1D01G257700 chr1B 90.687 2942 101 65 8 2872 472633033 472635878 0.000000e+00 3755
3 TraesCS1D01G257700 chr1B 85.799 338 20 10 978 1315 655059508 655059199 1.680000e-87 333
4 TraesCS1D01G257700 chr1A 90.771 2102 65 48 374 2405 451282911 451280869 0.000000e+00 2687
5 TraesCS1D01G257700 chr1A 86.353 850 44 31 2113 2930 451281178 451280369 0.000000e+00 861
6 TraesCS1D01G257700 chr1A 87.250 400 23 13 1 386 451283380 451282995 5.800000e-117 431
7 TraesCS1D01G257700 chr5D 85.886 333 19 14 983 1315 120775145 120774841 2.180000e-86 329
8 TraesCS1D01G257700 chr5D 91.813 171 10 3 984 1154 436603560 436603394 4.880000e-58 235
9 TraesCS1D01G257700 chr5D 88.321 137 4 2 1180 1316 369059550 369059426 1.410000e-33 154
10 TraesCS1D01G257700 chr3A 81.657 338 20 17 978 1315 724509883 724510178 2.920000e-60 243
11 TraesCS1D01G257700 chr3A 81.065 338 22 11 978 1315 724511746 724512041 6.310000e-57 231
12 TraesCS1D01G257700 chr3A 81.065 338 22 11 978 1315 724513600 724513895 6.310000e-57 231
13 TraesCS1D01G257700 chr3A 85.185 162 24 0 1289 1450 609959812 609959973 1.810000e-37 167
14 TraesCS1D01G257700 chr4D 91.525 177 11 3 978 1154 456276276 456276448 1.050000e-59 241
15 TraesCS1D01G257700 chr7A 90.667 150 11 2 1005 1154 112979554 112979408 2.300000e-46 196
16 TraesCS1D01G257700 chr5A 91.406 128 11 0 978 1105 13509328 13509455 3.000000e-40 176
17 TraesCS1D01G257700 chr3B 85.802 162 23 0 1289 1450 621297545 621297706 3.880000e-39 172
18 TraesCS1D01G257700 chr3D 85.185 162 24 0 1289 1450 467318816 467318977 1.810000e-37 167
19 TraesCS1D01G257700 chrUn 89.706 136 2 2 1180 1315 29857903 29858026 2.340000e-36 163
20 TraesCS1D01G257700 chr2D 88.235 136 4 2 1180 1315 103133520 103133643 5.060000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G257700 chr1D 350257859 350260788 2929 True 5411.000000 5411 100.000000 1 2930 1 chr1D.!!$R1 2929
1 TraesCS1D01G257700 chr1B 472633033 472635878 2845 False 3755.000000 3755 90.687000 8 2872 1 chr1B.!!$F1 2864
2 TraesCS1D01G257700 chr1A 451280369 451283380 3011 True 1326.333333 2687 88.124667 1 2930 3 chr1A.!!$R1 2929
3 TraesCS1D01G257700 chr3A 724509883 724513895 4012 False 235.000000 243 81.262333 978 1315 3 chr3A.!!$F2 337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 747 0.320247 CACTCATCATCGGCCTAGCC 60.32 60.0 0.0 0.0 46.75 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 4112 0.033366 TGATATGACGATGTGGGGCG 59.967 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.955402 CGATCGATCCGTCCTCCC 59.045 66.667 19.51 0.00 0.00 4.30
52 53 4.778415 CGTCCGTCCGTCCAGCAG 62.778 72.222 0.00 0.00 0.00 4.24
137 138 3.222863 ATTCCCCCTCCCCACCACT 62.223 63.158 0.00 0.00 0.00 4.00
179 183 3.315140 TTGGGTGTGATCCGGCGA 61.315 61.111 9.30 0.00 0.00 5.54
182 186 3.771160 GGTGTGATCCGGCGAGGT 61.771 66.667 9.30 0.00 41.99 3.85
190 194 3.744719 CCGGCGAGGTGAGACGAA 61.745 66.667 9.30 0.00 34.51 3.85
196 200 1.137825 GAGGTGAGACGAAGCGAGG 59.862 63.158 0.00 0.00 0.00 4.63
246 250 5.964288 ACTCCAGCTAAGAAGATATCTCCT 58.036 41.667 5.51 0.00 37.42 3.69
281 295 3.518634 TTTCCAGTCCAGTGTTTTTGC 57.481 42.857 0.00 0.00 0.00 3.68
290 304 4.268405 GTCCAGTGTTTTTGCTTTGTCATG 59.732 41.667 0.00 0.00 0.00 3.07
314 328 3.685756 TGTGTGTGATGCATGTGTAGATG 59.314 43.478 2.46 0.00 0.00 2.90
358 372 0.784778 CGAAATCGCTCGGCTTATCC 59.215 55.000 0.00 0.00 35.14 2.59
416 524 6.979018 TCTAGGATATGTAGGAGGAGATGT 57.021 41.667 0.00 0.00 0.00 3.06
440 548 0.543749 GGGGGAGGAGAATCACACAG 59.456 60.000 0.00 0.00 36.25 3.66
448 562 5.337894 GGAGGAGAATCACACAGAATTGAGA 60.338 44.000 0.00 0.00 36.25 3.27
449 563 6.119240 AGGAGAATCACACAGAATTGAGAA 57.881 37.500 0.00 0.00 36.25 2.87
450 564 6.171921 AGGAGAATCACACAGAATTGAGAAG 58.828 40.000 0.00 0.00 36.25 2.85
451 565 5.353678 GGAGAATCACACAGAATTGAGAAGG 59.646 44.000 0.00 0.00 36.25 3.46
493 607 2.741517 AGCAAACAAACAAAGCAACCAC 59.258 40.909 0.00 0.00 0.00 4.16
529 643 1.247567 GCTTTAAAGCCAGCCAGACA 58.752 50.000 26.60 0.00 46.20 3.41
540 660 4.383861 CCAGACAGAGGCAGCGCA 62.384 66.667 11.47 0.00 0.00 6.09
541 661 2.814341 CAGACAGAGGCAGCGCAG 60.814 66.667 11.47 1.31 0.00 5.18
627 747 0.320247 CACTCATCATCGGCCTAGCC 60.320 60.000 0.00 0.00 46.75 3.93
645 765 1.134037 GCCTCCGTCCTAGAGAGAGAA 60.134 57.143 0.00 0.00 32.86 2.87
649 769 4.127171 CTCCGTCCTAGAGAGAGAAAGAG 58.873 52.174 0.00 0.00 32.86 2.85
650 770 3.775866 TCCGTCCTAGAGAGAGAAAGAGA 59.224 47.826 0.00 0.00 0.00 3.10
701 821 5.782331 CAGATTGTTGATAGATAGAGGGGGA 59.218 44.000 0.00 0.00 0.00 4.81
702 822 6.022315 AGATTGTTGATAGATAGAGGGGGAG 58.978 44.000 0.00 0.00 0.00 4.30
703 823 5.418692 TTGTTGATAGATAGAGGGGGAGA 57.581 43.478 0.00 0.00 0.00 3.71
704 824 5.004361 TGTTGATAGATAGAGGGGGAGAG 57.996 47.826 0.00 0.00 0.00 3.20
705 825 4.670247 TGTTGATAGATAGAGGGGGAGAGA 59.330 45.833 0.00 0.00 0.00 3.10
788 908 2.163412 CCAAACGAGTGAGAGAGGAGAG 59.837 54.545 0.00 0.00 0.00 3.20
789 909 3.078097 CAAACGAGTGAGAGAGGAGAGA 58.922 50.000 0.00 0.00 0.00 3.10
856 977 2.705410 CTCCCTCCCTCCCCATCA 59.295 66.667 0.00 0.00 0.00 3.07
870 991 1.415716 CCCATCATCTCCTTCCTCCCT 60.416 57.143 0.00 0.00 0.00 4.20
871 992 2.416638 CCATCATCTCCTTCCTCCCTT 58.583 52.381 0.00 0.00 0.00 3.95
873 994 2.182516 TCATCTCCTTCCTCCCTTCC 57.817 55.000 0.00 0.00 0.00 3.46
876 997 1.694525 CTCCTTCCTCCCTTCCCCC 60.695 68.421 0.00 0.00 0.00 5.40
877 998 3.090532 CCTTCCTCCCTTCCCCCG 61.091 72.222 0.00 0.00 0.00 5.73
878 999 3.798511 CTTCCTCCCTTCCCCCGC 61.799 72.222 0.00 0.00 0.00 6.13
879 1000 4.348495 TTCCTCCCTTCCCCCGCT 62.348 66.667 0.00 0.00 0.00 5.52
880 1001 4.798682 TCCTCCCTTCCCCCGCTC 62.799 72.222 0.00 0.00 0.00 5.03
881 1002 4.806339 CCTCCCTTCCCCCGCTCT 62.806 72.222 0.00 0.00 0.00 4.09
882 1003 3.157949 CTCCCTTCCCCCGCTCTC 61.158 72.222 0.00 0.00 0.00 3.20
883 1004 4.798682 TCCCTTCCCCCGCTCTCC 62.799 72.222 0.00 0.00 0.00 3.71
884 1005 4.806339 CCCTTCCCCCGCTCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
885 1006 3.157949 CCTTCCCCCGCTCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
886 1007 2.042435 CTTCCCCCGCTCTCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
887 1008 2.042843 TTCCCCCGCTCTCCTCTC 60.043 66.667 0.00 0.00 0.00 3.20
888 1009 3.680920 TTCCCCCGCTCTCCTCTCC 62.681 68.421 0.00 0.00 0.00 3.71
889 1010 4.150454 CCCCCGCTCTCCTCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
890 1011 2.520741 CCCCGCTCTCCTCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
891 1012 2.600731 CCCGCTCTCCTCTCCTCT 59.399 66.667 0.00 0.00 0.00 3.69
892 1013 1.528309 CCCGCTCTCCTCTCCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
893 1014 1.528309 CCGCTCTCCTCTCCTCTCC 60.528 68.421 0.00 0.00 0.00 3.71
894 1015 1.531748 CGCTCTCCTCTCCTCTCCT 59.468 63.158 0.00 0.00 0.00 3.69
920 1043 2.157701 CGTGCTCTCTCGCTTGCTC 61.158 63.158 0.00 0.00 0.00 4.26
946 1069 4.400961 GGAGGACTGCGGCTTGCT 62.401 66.667 0.00 0.00 46.63 3.91
947 1070 2.579201 GAGGACTGCGGCTTGCTA 59.421 61.111 0.00 0.00 46.63 3.49
948 1071 1.811679 GAGGACTGCGGCTTGCTAC 60.812 63.158 0.00 0.00 46.63 3.58
949 1072 2.820037 GGACTGCGGCTTGCTACC 60.820 66.667 0.00 1.19 46.63 3.18
981 1104 2.817423 CGAATTGCTCTGCTCCGCC 61.817 63.158 0.00 0.00 0.00 6.13
2060 4114 1.064654 GAATCCCAGCAAGATTCACGC 59.935 52.381 14.82 0.00 45.86 5.34
2061 4115 0.749454 ATCCCAGCAAGATTCACGCC 60.749 55.000 0.00 0.00 0.00 5.68
2152 4238 0.458197 CTCTCTCTTCGCCAGTGCTG 60.458 60.000 0.00 0.00 34.43 4.41
2301 4391 2.099141 TGCTGCCTGCTAGTACTTTG 57.901 50.000 0.00 0.00 43.37 2.77
2306 4396 3.521560 TGCCTGCTAGTACTTTGATTCG 58.478 45.455 0.00 0.00 0.00 3.34
2569 5184 4.187694 CTGAGCTTGGAGGTGAATAAGTC 58.812 47.826 0.00 0.00 0.00 3.01
2602 5217 1.458398 TGTTTGTACCGGCATGATGG 58.542 50.000 0.00 0.00 0.00 3.51
2634 5249 1.675641 CGTCCTTTGGGCTTCAGGG 60.676 63.158 0.00 0.00 0.00 4.45
2643 5258 1.452108 GGCTTCAGGGGGATGAACG 60.452 63.158 0.00 0.00 35.40 3.95
2724 5366 5.301805 ACCCAAATTGGAGTTTCTTGTAGTG 59.698 40.000 14.62 0.00 40.96 2.74
2757 5399 4.949856 TGTAAATCTTCCCTGCTCCATTTC 59.050 41.667 0.00 0.00 0.00 2.17
2760 5402 3.744940 TCTTCCCTGCTCCATTTCAAT 57.255 42.857 0.00 0.00 0.00 2.57
2766 5408 3.067742 CCCTGCTCCATTTCAATAGCTTG 59.932 47.826 0.00 0.00 35.95 4.01
2780 5422 5.181245 TCAATAGCTTGTTGTTTCCTGTAGC 59.819 40.000 0.00 0.00 33.87 3.58
2846 5495 3.244345 GCGCGTACAGTGATGCTTAATTA 59.756 43.478 8.43 0.00 0.00 1.40
2873 5523 9.174166 GGGTATGTTCAAATCAACAGTACTATT 57.826 33.333 0.00 0.00 39.63 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.255856 GGAGGACGGATCGATCGC 59.744 66.667 18.81 10.95 0.00 4.58
32 33 3.812019 CTGGACGGACGGACGGAG 61.812 72.222 6.00 0.00 38.39 4.63
101 102 1.806461 ATCTCGTGTGGCTCGTGTGT 61.806 55.000 0.00 0.00 0.00 3.72
154 158 0.958876 GATCACACCCAACCGAACCC 60.959 60.000 0.00 0.00 0.00 4.11
179 183 2.344203 CCCTCGCTTCGTCTCACCT 61.344 63.158 0.00 0.00 0.00 4.00
182 186 0.965866 ATGTCCCTCGCTTCGTCTCA 60.966 55.000 0.00 0.00 0.00 3.27
246 250 0.239347 GGAAAAGGACGAGACGACGA 59.761 55.000 0.00 0.00 37.03 4.20
281 295 3.561503 CATCACACACAGCATGACAAAG 58.438 45.455 0.00 0.00 39.69 2.77
290 304 0.594602 ACACATGCATCACACACAGC 59.405 50.000 0.00 0.00 0.00 4.40
314 328 2.754254 GGGATTTCCGGGGCACAC 60.754 66.667 0.00 0.00 36.71 3.82
384 492 9.629878 CCTCCTACATATCCTAGATAAATACGT 57.370 37.037 0.00 0.00 0.00 3.57
416 524 1.916181 GTGATTCTCCTCCCCCTTTCA 59.084 52.381 0.00 0.00 0.00 2.69
440 548 2.025887 TCCTGCCTTCCCTTCTCAATTC 60.026 50.000 0.00 0.00 0.00 2.17
448 562 1.360393 TGTTGGTCCTGCCTTCCCTT 61.360 55.000 0.00 0.00 38.35 3.95
449 563 1.360393 TTGTTGGTCCTGCCTTCCCT 61.360 55.000 0.00 0.00 38.35 4.20
450 564 0.895559 CTTGTTGGTCCTGCCTTCCC 60.896 60.000 0.00 0.00 38.35 3.97
451 565 1.527433 GCTTGTTGGTCCTGCCTTCC 61.527 60.000 0.00 0.00 38.35 3.46
523 637 4.383861 TGCGCTGCCTCTGTCTGG 62.384 66.667 9.73 0.00 0.00 3.86
563 683 2.124320 AGTGGTGCGGTGCAGTTT 60.124 55.556 0.00 0.00 40.08 2.66
627 747 4.127171 CTCTTTCTCTCTCTAGGACGGAG 58.873 52.174 0.00 0.00 0.00 4.63
645 765 0.252927 CCACCCCTTCCCTCTCTCTT 60.253 60.000 0.00 0.00 0.00 2.85
649 769 1.004862 CTTTTCCACCCCTTCCCTCTC 59.995 57.143 0.00 0.00 0.00 3.20
650 770 1.076438 CTTTTCCACCCCTTCCCTCT 58.924 55.000 0.00 0.00 0.00 3.69
701 821 4.325344 CCCCTCTTTTCTCTCTCTCTCTCT 60.325 50.000 0.00 0.00 0.00 3.10
702 822 3.954258 CCCCTCTTTTCTCTCTCTCTCTC 59.046 52.174 0.00 0.00 0.00 3.20
703 823 3.309848 CCCCCTCTTTTCTCTCTCTCTCT 60.310 52.174 0.00 0.00 0.00 3.10
704 824 3.031013 CCCCCTCTTTTCTCTCTCTCTC 58.969 54.545 0.00 0.00 0.00 3.20
705 825 2.657459 TCCCCCTCTTTTCTCTCTCTCT 59.343 50.000 0.00 0.00 0.00 3.10
788 908 5.353123 TCTTCTAAGCTTTCGTCTCTCTCTC 59.647 44.000 3.20 0.00 0.00 3.20
789 909 5.250200 TCTTCTAAGCTTTCGTCTCTCTCT 58.750 41.667 3.20 0.00 0.00 3.10
856 977 0.029577 GGGGAAGGGAGGAAGGAGAT 60.030 60.000 0.00 0.00 0.00 2.75
870 991 2.042843 GAGAGGAGAGCGGGGGAA 60.043 66.667 0.00 0.00 0.00 3.97
871 992 4.144727 GGAGAGGAGAGCGGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
873 994 2.520741 GAGGAGAGGAGAGCGGGG 60.521 72.222 0.00 0.00 0.00 5.73
876 997 0.535102 GAGGAGAGGAGAGGAGAGCG 60.535 65.000 0.00 0.00 0.00 5.03
877 998 0.846693 AGAGGAGAGGAGAGGAGAGC 59.153 60.000 0.00 0.00 0.00 4.09
878 999 1.421646 GGAGAGGAGAGGAGAGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
879 1000 1.010793 AGGAGAGGAGAGGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
880 1001 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
881 1002 1.518367 GAGGAGAGGAGAGGAGAGGA 58.482 60.000 0.00 0.00 0.00 3.71
882 1003 0.478507 GGAGGAGAGGAGAGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
883 1004 0.478507 GGGAGGAGAGGAGAGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
884 1005 1.349542 CGGGAGGAGAGGAGAGGAGA 61.350 65.000 0.00 0.00 0.00 3.71
885 1006 1.150536 CGGGAGGAGAGGAGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
886 1007 1.619975 ACGGGAGGAGAGGAGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
887 1008 1.454847 CACGGGAGGAGAGGAGAGG 60.455 68.421 0.00 0.00 0.00 3.69
888 1009 2.124693 GCACGGGAGGAGAGGAGAG 61.125 68.421 0.00 0.00 0.00 3.20
889 1010 2.043852 GCACGGGAGGAGAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
890 1011 2.043450 AGCACGGGAGGAGAGGAG 60.043 66.667 0.00 0.00 0.00 3.69
891 1012 2.043852 GAGCACGGGAGGAGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
892 1013 2.043450 AGAGCACGGGAGGAGAGG 60.043 66.667 0.00 0.00 0.00 3.69
893 1014 1.077068 AGAGAGCACGGGAGGAGAG 60.077 63.158 0.00 0.00 0.00 3.20
894 1015 1.077357 GAGAGAGCACGGGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
920 1043 4.463879 CAGTCCTCCGCTGGCAGG 62.464 72.222 17.64 6.32 0.00 4.85
945 1068 4.530857 CCTCCTTGCCCGCGGTAG 62.531 72.222 26.12 17.44 0.00 3.18
951 1074 2.438434 AATTCGCCTCCTTGCCCG 60.438 61.111 0.00 0.00 0.00 6.13
952 1075 3.068729 GCAATTCGCCTCCTTGCCC 62.069 63.158 0.00 0.00 39.42 5.36
953 1076 1.997928 GAGCAATTCGCCTCCTTGCC 61.998 60.000 3.10 0.00 44.90 4.52
954 1077 1.028868 AGAGCAATTCGCCTCCTTGC 61.029 55.000 0.00 0.00 44.04 4.01
960 1083 1.451028 GGAGCAGAGCAATTCGCCT 60.451 57.895 0.00 0.00 44.04 5.52
991 1114 2.525381 CTCCCTCATCCTCCCGGG 60.525 72.222 16.85 16.85 38.07 5.73
1521 3509 4.379243 AAGAGGTGCTCGGTGGCG 62.379 66.667 0.00 0.00 35.36 5.69
1964 4014 2.516460 CGAGGAGGACGGACGGAT 60.516 66.667 0.00 0.00 0.00 4.18
2058 4112 0.033366 TGATATGACGATGTGGGGCG 59.967 55.000 0.00 0.00 0.00 6.13
2059 4113 2.479566 ATGATATGACGATGTGGGGC 57.520 50.000 0.00 0.00 0.00 5.80
2060 4114 4.142071 CCTCTATGATATGACGATGTGGGG 60.142 50.000 0.00 0.00 0.00 4.96
2061 4115 4.679106 GCCTCTATGATATGACGATGTGGG 60.679 50.000 0.00 0.00 0.00 4.61
2152 4238 2.454055 GCAACACAAGAACAGAACAGC 58.546 47.619 0.00 0.00 0.00 4.40
2301 4391 3.311322 TCAGACAACCAACAACACGAATC 59.689 43.478 0.00 0.00 0.00 2.52
2306 4396 2.639065 TCCTCAGACAACCAACAACAC 58.361 47.619 0.00 0.00 0.00 3.32
2400 5010 0.807496 GCATCACTCAAGGACCAAGC 59.193 55.000 0.00 0.00 0.00 4.01
2569 5184 7.075741 CCGGTACAAACAAACTTAATTCTCAG 58.924 38.462 0.00 0.00 0.00 3.35
2602 5217 2.317530 AGGACGAGGAGCTAAATTGC 57.682 50.000 0.00 0.00 0.00 3.56
2634 5249 1.803334 TTGCTACACACGTTCATCCC 58.197 50.000 0.00 0.00 0.00 3.85
2724 5366 6.627287 GCAGGGAAGATTTACAAATGGTTACC 60.627 42.308 0.00 0.00 0.00 2.85
2757 5399 5.393962 GCTACAGGAAACAACAAGCTATTG 58.606 41.667 8.69 8.69 42.46 1.90
2760 5402 3.408634 GGCTACAGGAAACAACAAGCTA 58.591 45.455 0.00 0.00 0.00 3.32
2766 5408 2.038557 TCTCAGGGCTACAGGAAACAAC 59.961 50.000 0.00 0.00 0.00 3.32
2802 5451 4.982295 GCACAATCCAACAAGGTTTTCTAC 59.018 41.667 0.00 0.00 39.02 2.59
2803 5452 4.261405 CGCACAATCCAACAAGGTTTTCTA 60.261 41.667 0.00 0.00 39.02 2.10
2846 5495 6.779860 AGTACTGTTGATTTGAACATACCCT 58.220 36.000 0.00 0.00 35.32 4.34
2873 5523 0.677731 CGCATTGGGAGAGCAGGAAA 60.678 55.000 0.00 0.00 0.00 3.13
2874 5524 1.078214 CGCATTGGGAGAGCAGGAA 60.078 57.895 0.00 0.00 0.00 3.36
2875 5525 2.293318 ACGCATTGGGAGAGCAGGA 61.293 57.895 7.82 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.