Multiple sequence alignment - TraesCS1D01G256800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G256800 chr1D 100.000 3174 0 0 1 3174 349342675 349339502 0.000000e+00 5862.0
1 TraesCS1D01G256800 chr1D 90.114 1497 97 26 860 2325 348984508 348985984 0.000000e+00 1897.0
2 TraesCS1D01G256800 chr1D 96.384 636 22 1 2539 3174 349298580 349297946 0.000000e+00 1046.0
3 TraesCS1D01G256800 chr1D 93.790 628 38 1 2540 3167 272762649 272762023 0.000000e+00 942.0
4 TraesCS1D01G256800 chr1D 93.043 115 8 0 2347 2461 348985981 348986095 5.440000e-38 169.0
5 TraesCS1D01G256800 chr1A 92.008 2077 102 27 123 2178 449667186 449665153 0.000000e+00 2857.0
6 TraesCS1D01G256800 chr1A 90.431 1369 93 20 860 2212 449507011 449508357 0.000000e+00 1768.0
7 TraesCS1D01G256800 chr1A 96.078 51 2 0 2275 2325 449665095 449665045 2.030000e-12 84.2
8 TraesCS1D01G256800 chr1B 93.341 1772 62 26 734 2493 470942135 470940408 0.000000e+00 2567.0
9 TraesCS1D01G256800 chr1B 91.057 1409 96 14 832 2219 470694740 470696139 0.000000e+00 1877.0
10 TraesCS1D01G256800 chr1B 89.855 138 14 0 531 668 470942270 470942133 9.050000e-41 178.0
11 TraesCS1D01G256800 chrUn 93.405 1577 59 25 734 2297 7150753 7149209 0.000000e+00 2294.0
12 TraesCS1D01G256800 chrUn 89.720 535 35 10 141 668 7151272 7150751 0.000000e+00 665.0
13 TraesCS1D01G256800 chrUn 82.292 384 29 15 152 529 472729788 472729438 2.390000e-76 296.0
14 TraesCS1D01G256800 chrUn 90.000 150 15 0 519 668 472729416 472729267 8.980000e-46 195.0
15 TraesCS1D01G256800 chr4D 94.136 631 37 0 2539 3169 457095522 457094892 0.000000e+00 961.0
16 TraesCS1D01G256800 chr4D 93.819 631 38 1 2540 3169 117434216 117433586 0.000000e+00 948.0
17 TraesCS1D01G256800 chr7D 93.375 634 41 1 2536 3169 576048037 576048669 0.000000e+00 937.0
18 TraesCS1D01G256800 chr7D 93.071 635 42 2 2536 3169 236592075 236591442 0.000000e+00 928.0
19 TraesCS1D01G256800 chr7D 93.185 631 42 1 2539 3169 605011654 605011025 0.000000e+00 926.0
20 TraesCS1D01G256800 chr3D 93.082 636 42 2 2535 3169 347156008 347155374 0.000000e+00 929.0
21 TraesCS1D01G256800 chr5D 93.060 634 44 0 2536 3169 53751573 53752206 0.000000e+00 928.0
22 TraesCS1D01G256800 chr7A 92.157 51 4 0 2490 2540 284529699 284529749 4.390000e-09 73.1
23 TraesCS1D01G256800 chr7A 92.000 50 4 0 2491 2540 140640230 140640279 1.580000e-08 71.3
24 TraesCS1D01G256800 chr3A 92.000 50 4 0 2491 2540 467633461 467633510 1.580000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G256800 chr1D 349339502 349342675 3173 True 5862.0 5862 100.0000 1 3174 1 chr1D.!!$R3 3173
1 TraesCS1D01G256800 chr1D 349297946 349298580 634 True 1046.0 1046 96.3840 2539 3174 1 chr1D.!!$R2 635
2 TraesCS1D01G256800 chr1D 348984508 348986095 1587 False 1033.0 1897 91.5785 860 2461 2 chr1D.!!$F1 1601
3 TraesCS1D01G256800 chr1D 272762023 272762649 626 True 942.0 942 93.7900 2540 3167 1 chr1D.!!$R1 627
4 TraesCS1D01G256800 chr1A 449507011 449508357 1346 False 1768.0 1768 90.4310 860 2212 1 chr1A.!!$F1 1352
5 TraesCS1D01G256800 chr1A 449665045 449667186 2141 True 1470.6 2857 94.0430 123 2325 2 chr1A.!!$R1 2202
6 TraesCS1D01G256800 chr1B 470694740 470696139 1399 False 1877.0 1877 91.0570 832 2219 1 chr1B.!!$F1 1387
7 TraesCS1D01G256800 chr1B 470940408 470942270 1862 True 1372.5 2567 91.5980 531 2493 2 chr1B.!!$R1 1962
8 TraesCS1D01G256800 chrUn 7149209 7151272 2063 True 1479.5 2294 91.5625 141 2297 2 chrUn.!!$R1 2156
9 TraesCS1D01G256800 chrUn 472729267 472729788 521 True 245.5 296 86.1460 152 668 2 chrUn.!!$R2 516
10 TraesCS1D01G256800 chr4D 457094892 457095522 630 True 961.0 961 94.1360 2539 3169 1 chr4D.!!$R2 630
11 TraesCS1D01G256800 chr4D 117433586 117434216 630 True 948.0 948 93.8190 2540 3169 1 chr4D.!!$R1 629
12 TraesCS1D01G256800 chr7D 576048037 576048669 632 False 937.0 937 93.3750 2536 3169 1 chr7D.!!$F1 633
13 TraesCS1D01G256800 chr7D 236591442 236592075 633 True 928.0 928 93.0710 2536 3169 1 chr7D.!!$R1 633
14 TraesCS1D01G256800 chr7D 605011025 605011654 629 True 926.0 926 93.1850 2539 3169 1 chr7D.!!$R2 630
15 TraesCS1D01G256800 chr3D 347155374 347156008 634 True 929.0 929 93.0820 2535 3169 1 chr3D.!!$R1 634
16 TraesCS1D01G256800 chr5D 53751573 53752206 633 False 928.0 928 93.0600 2536 3169 1 chr5D.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 881 0.035439 CACACGACCTAATTGGCCCT 60.035 55.0 0.0 0.0 40.22 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 2688 0.251165 CCCGAGTTCAACCCACCAAT 60.251 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.779241 ATGAATAGAGGTTCCCACTTGAA 57.221 39.130 0.00 0.00 0.00 2.69
23 24 5.779241 TGAATAGAGGTTCCCACTTGAAT 57.221 39.130 0.00 0.00 0.00 2.57
24 25 6.884472 TGAATAGAGGTTCCCACTTGAATA 57.116 37.500 0.00 0.00 0.00 1.75
25 26 7.265599 TGAATAGAGGTTCCCACTTGAATAA 57.734 36.000 0.00 0.00 0.00 1.40
26 27 7.338710 TGAATAGAGGTTCCCACTTGAATAAG 58.661 38.462 0.00 0.00 39.86 1.73
27 28 7.182026 TGAATAGAGGTTCCCACTTGAATAAGA 59.818 37.037 0.00 0.00 37.36 2.10
28 29 5.167303 AGAGGTTCCCACTTGAATAAGAC 57.833 43.478 0.00 0.00 37.36 3.01
29 30 4.597507 AGAGGTTCCCACTTGAATAAGACA 59.402 41.667 0.00 0.00 37.36 3.41
30 31 5.251700 AGAGGTTCCCACTTGAATAAGACAT 59.748 40.000 0.00 0.00 37.36 3.06
31 32 5.256474 AGGTTCCCACTTGAATAAGACATG 58.744 41.667 0.00 0.00 37.36 3.21
32 33 5.014123 AGGTTCCCACTTGAATAAGACATGA 59.986 40.000 0.00 0.00 37.36 3.07
33 34 5.710099 GGTTCCCACTTGAATAAGACATGAA 59.290 40.000 0.00 0.00 37.36 2.57
34 35 6.208599 GGTTCCCACTTGAATAAGACATGAAA 59.791 38.462 0.00 0.00 37.36 2.69
35 36 7.093771 GGTTCCCACTTGAATAAGACATGAAAT 60.094 37.037 0.00 0.00 37.36 2.17
36 37 7.395190 TCCCACTTGAATAAGACATGAAATG 57.605 36.000 0.00 0.00 42.94 2.32
50 51 4.751060 CATGAAATGTGGTCTCAAATGGG 58.249 43.478 0.00 0.00 40.20 4.00
51 52 3.843422 TGAAATGTGGTCTCAAATGGGT 58.157 40.909 0.00 0.00 0.00 4.51
52 53 4.222336 TGAAATGTGGTCTCAAATGGGTT 58.778 39.130 0.00 0.00 0.00 4.11
53 54 4.653341 TGAAATGTGGTCTCAAATGGGTTT 59.347 37.500 0.00 0.00 0.00 3.27
54 55 4.605640 AATGTGGTCTCAAATGGGTTTG 57.394 40.909 0.00 0.00 44.81 2.93
56 57 2.955660 TGTGGTCTCAAATGGGTTTGAC 59.044 45.455 0.00 0.00 46.49 3.18
57 58 3.222603 GTGGTCTCAAATGGGTTTGACT 58.777 45.455 0.00 0.00 46.49 3.41
58 59 4.141367 TGTGGTCTCAAATGGGTTTGACTA 60.141 41.667 0.00 0.00 46.49 2.59
59 60 4.825085 GTGGTCTCAAATGGGTTTGACTAA 59.175 41.667 0.00 0.00 46.49 2.24
60 61 5.048713 GTGGTCTCAAATGGGTTTGACTAAG 60.049 44.000 0.00 0.00 46.49 2.18
61 62 4.459337 GGTCTCAAATGGGTTTGACTAAGG 59.541 45.833 0.00 0.00 46.49 2.69
62 63 4.459337 GTCTCAAATGGGTTTGACTAAGGG 59.541 45.833 0.00 0.00 46.49 3.95
63 64 4.105697 TCTCAAATGGGTTTGACTAAGGGT 59.894 41.667 0.00 0.00 46.49 4.34
64 65 4.810345 TCAAATGGGTTTGACTAAGGGTT 58.190 39.130 0.00 0.00 46.49 4.11
65 66 5.954757 TCAAATGGGTTTGACTAAGGGTTA 58.045 37.500 0.00 0.00 46.49 2.85
66 67 6.007703 TCAAATGGGTTTGACTAAGGGTTAG 58.992 40.000 0.00 0.00 46.49 2.34
67 68 3.428413 TGGGTTTGACTAAGGGTTAGC 57.572 47.619 0.00 0.00 36.71 3.09
68 69 2.983898 TGGGTTTGACTAAGGGTTAGCT 59.016 45.455 0.00 0.00 36.71 3.32
69 70 4.169666 TGGGTTTGACTAAGGGTTAGCTA 58.830 43.478 0.00 0.00 36.71 3.32
70 71 4.786454 TGGGTTTGACTAAGGGTTAGCTAT 59.214 41.667 0.00 0.00 36.71 2.97
71 72 5.965705 TGGGTTTGACTAAGGGTTAGCTATA 59.034 40.000 0.00 0.00 36.71 1.31
72 73 6.099269 TGGGTTTGACTAAGGGTTAGCTATAG 59.901 42.308 0.00 0.00 36.71 1.31
73 74 6.099413 GGGTTTGACTAAGGGTTAGCTATAGT 59.901 42.308 4.06 4.06 36.71 2.12
74 75 6.985059 GGTTTGACTAAGGGTTAGCTATAGTG 59.015 42.308 8.37 0.00 36.71 2.74
75 76 5.786264 TGACTAAGGGTTAGCTATAGTGC 57.214 43.478 8.37 2.84 36.71 4.40
76 77 5.205821 TGACTAAGGGTTAGCTATAGTGCA 58.794 41.667 8.37 4.83 36.71 4.57
77 78 5.839063 TGACTAAGGGTTAGCTATAGTGCAT 59.161 40.000 8.37 0.00 36.71 3.96
78 79 6.102897 ACTAAGGGTTAGCTATAGTGCATG 57.897 41.667 0.84 0.00 36.71 4.06
79 80 5.839063 ACTAAGGGTTAGCTATAGTGCATGA 59.161 40.000 0.00 0.00 36.71 3.07
80 81 5.630415 AAGGGTTAGCTATAGTGCATGAA 57.370 39.130 0.00 0.00 34.99 2.57
81 82 4.962155 AGGGTTAGCTATAGTGCATGAAC 58.038 43.478 0.00 0.00 34.99 3.18
82 83 4.408921 AGGGTTAGCTATAGTGCATGAACA 59.591 41.667 6.60 0.00 34.99 3.18
83 84 4.752101 GGGTTAGCTATAGTGCATGAACAG 59.248 45.833 6.60 0.00 34.99 3.16
84 85 5.360591 GGTTAGCTATAGTGCATGAACAGT 58.639 41.667 6.60 0.00 34.99 3.55
85 86 5.817816 GGTTAGCTATAGTGCATGAACAGTT 59.182 40.000 6.60 0.00 34.99 3.16
86 87 6.316390 GGTTAGCTATAGTGCATGAACAGTTT 59.684 38.462 6.60 0.00 34.99 2.66
87 88 7.494625 GGTTAGCTATAGTGCATGAACAGTTTA 59.505 37.037 6.60 0.00 34.99 2.01
88 89 8.879759 GTTAGCTATAGTGCATGAACAGTTTAA 58.120 33.333 6.60 0.00 34.99 1.52
89 90 7.921786 AGCTATAGTGCATGAACAGTTTAAA 57.078 32.000 6.60 0.00 34.99 1.52
90 91 7.978982 AGCTATAGTGCATGAACAGTTTAAAG 58.021 34.615 6.60 0.00 34.99 1.85
91 92 7.607991 AGCTATAGTGCATGAACAGTTTAAAGT 59.392 33.333 6.60 0.00 34.99 2.66
92 93 8.879759 GCTATAGTGCATGAACAGTTTAAAGTA 58.120 33.333 6.60 0.00 0.00 2.24
95 96 7.510549 AGTGCATGAACAGTTTAAAGTATGT 57.489 32.000 6.60 0.00 0.00 2.29
96 97 7.362662 AGTGCATGAACAGTTTAAAGTATGTG 58.637 34.615 6.60 0.00 0.00 3.21
97 98 7.228507 AGTGCATGAACAGTTTAAAGTATGTGA 59.771 33.333 6.60 0.00 0.00 3.58
98 99 8.023128 GTGCATGAACAGTTTAAAGTATGTGAT 58.977 33.333 0.00 0.00 0.00 3.06
99 100 8.575589 TGCATGAACAGTTTAAAGTATGTGATT 58.424 29.630 0.00 0.00 0.00 2.57
100 101 9.065871 GCATGAACAGTTTAAAGTATGTGATTC 57.934 33.333 0.00 0.00 0.00 2.52
222 223 5.953183 TCGTGAAGCATGCAAAAATTATCT 58.047 33.333 21.98 0.00 0.00 1.98
226 227 8.316046 CGTGAAGCATGCAAAAATTATCTTTAG 58.684 33.333 21.98 0.00 0.00 1.85
264 272 2.067013 CAGCGATGATATGTCTGCCAG 58.933 52.381 0.00 0.00 0.00 4.85
430 450 3.373565 GGCCAGCCCCACGAAAAG 61.374 66.667 0.00 0.00 0.00 2.27
479 499 0.392706 TGACGTGTCAAGCCACAGAT 59.607 50.000 0.00 0.00 36.53 2.90
502 523 6.959639 TGCCAGAGAAAATTGTCTTACTTT 57.040 33.333 0.00 0.00 0.00 2.66
503 524 8.635765 ATGCCAGAGAAAATTGTCTTACTTTA 57.364 30.769 0.00 0.00 0.00 1.85
504 525 8.458573 TGCCAGAGAAAATTGTCTTACTTTAA 57.541 30.769 0.00 0.00 0.00 1.52
505 526 9.077885 TGCCAGAGAAAATTGTCTTACTTTAAT 57.922 29.630 0.00 0.00 0.00 1.40
506 527 9.561270 GCCAGAGAAAATTGTCTTACTTTAATC 57.439 33.333 0.00 0.00 0.00 1.75
580 647 1.273606 CCGATCTGTGACTGACCAAGT 59.726 52.381 0.00 0.00 43.85 3.16
589 656 3.988517 GTGACTGACCAAGTTGTAGTAGC 59.011 47.826 1.45 0.00 40.07 3.58
689 757 8.184192 CGACCTTCATAAAATCATAAGCAAACT 58.816 33.333 0.00 0.00 0.00 2.66
690 758 9.860898 GACCTTCATAAAATCATAAGCAAACTT 57.139 29.630 0.00 0.00 40.07 2.66
731 800 4.753662 CCCCCTCCCGTGTCTCGA 62.754 72.222 0.00 0.00 42.86 4.04
735 804 1.080025 CCTCCCGTGTCTCGAAACC 60.080 63.158 0.00 0.00 42.86 3.27
804 873 1.370778 CACGCGACACACGACCTAA 60.371 57.895 15.93 0.00 45.77 2.69
806 875 0.038892 ACGCGACACACGACCTAATT 60.039 50.000 15.93 0.00 45.77 1.40
807 876 0.365523 CGCGACACACGACCTAATTG 59.634 55.000 0.00 0.00 45.77 2.32
808 877 0.719465 GCGACACACGACCTAATTGG 59.281 55.000 0.00 0.00 45.77 3.16
809 878 0.719465 CGACACACGACCTAATTGGC 59.281 55.000 0.00 0.00 45.77 4.52
810 879 1.084289 GACACACGACCTAATTGGCC 58.916 55.000 0.00 0.00 40.22 5.36
811 880 0.322187 ACACACGACCTAATTGGCCC 60.322 55.000 0.00 0.00 40.22 5.80
812 881 0.035439 CACACGACCTAATTGGCCCT 60.035 55.000 0.00 0.00 40.22 5.19
813 882 0.696501 ACACGACCTAATTGGCCCTT 59.303 50.000 0.00 0.00 40.22 3.95
814 883 1.339727 ACACGACCTAATTGGCCCTTC 60.340 52.381 0.00 0.00 40.22 3.46
815 884 1.065418 CACGACCTAATTGGCCCTTCT 60.065 52.381 0.00 0.00 40.22 2.85
816 885 1.209747 ACGACCTAATTGGCCCTTCTC 59.790 52.381 0.00 0.00 40.22 2.87
817 886 1.806623 CGACCTAATTGGCCCTTCTCG 60.807 57.143 0.00 0.00 40.22 4.04
818 887 0.546598 ACCTAATTGGCCCTTCTCGG 59.453 55.000 0.00 0.00 40.22 4.63
890 977 3.645268 AATTCCCTGCCACCCGCTC 62.645 63.158 0.00 0.00 38.78 5.03
1050 1167 3.999001 CACGGTACTCTACAGTCTACACA 59.001 47.826 0.00 0.00 34.89 3.72
1061 1182 1.900016 TCTACACACGACCCGCACT 60.900 57.895 0.00 0.00 0.00 4.40
1076 1197 1.347320 GCACTGTAGAGCGTGTAACC 58.653 55.000 0.00 0.00 33.78 2.85
1092 1221 2.126071 CCTACACCACAGCGACGG 60.126 66.667 0.00 0.00 0.00 4.79
1446 1584 1.802365 CTGTACCACCACTTTTACGCC 59.198 52.381 0.00 0.00 0.00 5.68
1452 1590 2.396157 CCACTTTTACGCCCGCCTC 61.396 63.158 0.00 0.00 0.00 4.70
1528 1666 1.227674 CGCCTTCCTGCCCAGATAC 60.228 63.158 0.00 0.00 0.00 2.24
1989 2127 2.711922 GGACCTCATCCGCGACACT 61.712 63.158 8.23 0.00 37.88 3.55
2171 2309 2.102757 TCGTTGCCCGCCACTAATAATA 59.897 45.455 0.00 0.00 36.19 0.98
2172 2310 2.873472 CGTTGCCCGCCACTAATAATAA 59.127 45.455 0.00 0.00 0.00 1.40
2174 2312 4.553938 CGTTGCCCGCCACTAATAATAAAG 60.554 45.833 0.00 0.00 0.00 1.85
2175 2313 2.882137 TGCCCGCCACTAATAATAAAGC 59.118 45.455 0.00 0.00 0.00 3.51
2176 2314 2.882137 GCCCGCCACTAATAATAAAGCA 59.118 45.455 0.00 0.00 0.00 3.91
2177 2315 3.506067 GCCCGCCACTAATAATAAAGCAT 59.494 43.478 0.00 0.00 0.00 3.79
2178 2316 4.379499 GCCCGCCACTAATAATAAAGCATC 60.379 45.833 0.00 0.00 0.00 3.91
2179 2317 4.759693 CCCGCCACTAATAATAAAGCATCA 59.240 41.667 0.00 0.00 0.00 3.07
2245 2394 2.084546 GGTGTGTCTGCCATTAAGTCC 58.915 52.381 0.00 0.00 0.00 3.85
2254 2403 3.035363 TGCCATTAAGTCCATCGACCTA 58.965 45.455 0.00 0.00 40.12 3.08
2255 2404 3.069586 TGCCATTAAGTCCATCGACCTAG 59.930 47.826 0.00 0.00 40.12 3.02
2305 2458 4.100963 ACGTGATGGCTTCTGGATTGTATA 59.899 41.667 1.86 0.00 0.00 1.47
2328 2481 2.602878 GTCGCCTCGTCTGTTATTCAA 58.397 47.619 0.00 0.00 0.00 2.69
2389 2545 3.804873 GTCTTTCGTTATCAGGCCATCTC 59.195 47.826 5.01 0.00 0.00 2.75
2424 2580 5.334337 CGTGATCAGTGTTGTTTCATGTCAT 60.334 40.000 0.00 0.00 0.00 3.06
2436 2592 8.911662 GTTGTTTCATGTCATTGTAATAACCAC 58.088 33.333 0.00 0.00 28.60 4.16
2463 2619 5.999205 AATCATGGGAAGTGTTTGCAATA 57.001 34.783 0.00 0.00 0.00 1.90
2464 2620 4.782019 TCATGGGAAGTGTTTGCAATAC 57.218 40.909 0.00 2.87 0.00 1.89
2493 2649 5.921004 TGCAAAATTTAGCCATTGTTGTC 57.079 34.783 0.00 0.00 0.00 3.18
2494 2650 4.447054 TGCAAAATTTAGCCATTGTTGTCG 59.553 37.500 0.00 0.00 0.00 4.35
2495 2651 4.447389 GCAAAATTTAGCCATTGTTGTCGT 59.553 37.500 0.00 0.00 0.00 4.34
2496 2652 5.612276 GCAAAATTTAGCCATTGTTGTCGTG 60.612 40.000 0.00 0.00 0.00 4.35
2497 2653 5.446143 AAATTTAGCCATTGTTGTCGTGA 57.554 34.783 0.00 0.00 0.00 4.35
2498 2654 5.446143 AATTTAGCCATTGTTGTCGTGAA 57.554 34.783 0.00 0.00 0.00 3.18
2499 2655 4.902443 TTTAGCCATTGTTGTCGTGAAA 57.098 36.364 0.00 0.00 0.00 2.69
2500 2656 4.481930 TTAGCCATTGTTGTCGTGAAAG 57.518 40.909 0.00 0.00 0.00 2.62
2501 2657 2.297701 AGCCATTGTTGTCGTGAAAGT 58.702 42.857 0.00 0.00 0.00 2.66
2502 2658 2.033299 AGCCATTGTTGTCGTGAAAGTG 59.967 45.455 0.00 0.00 0.00 3.16
2503 2659 2.223479 GCCATTGTTGTCGTGAAAGTGT 60.223 45.455 0.00 0.00 0.00 3.55
2504 2660 3.617669 CCATTGTTGTCGTGAAAGTGTC 58.382 45.455 0.00 0.00 0.00 3.67
2505 2661 3.064682 CCATTGTTGTCGTGAAAGTGTCA 59.935 43.478 0.00 0.00 0.00 3.58
2512 2668 2.986311 GTGAAAGTGTCACGGCAGA 58.014 52.632 0.00 0.00 46.99 4.26
2513 2669 1.512926 GTGAAAGTGTCACGGCAGAT 58.487 50.000 0.00 0.00 46.99 2.90
2514 2670 1.195448 GTGAAAGTGTCACGGCAGATG 59.805 52.381 0.00 0.00 46.99 2.90
2515 2671 1.202639 TGAAAGTGTCACGGCAGATGT 60.203 47.619 0.00 0.00 0.00 3.06
2516 2672 1.461127 GAAAGTGTCACGGCAGATGTC 59.539 52.381 0.00 0.00 0.00 3.06
2517 2673 0.681733 AAGTGTCACGGCAGATGTCT 59.318 50.000 0.00 0.00 0.00 3.41
2518 2674 0.681733 AGTGTCACGGCAGATGTCTT 59.318 50.000 0.00 0.00 0.00 3.01
2519 2675 1.071605 GTGTCACGGCAGATGTCTTC 58.928 55.000 0.00 0.00 0.00 2.87
2520 2676 0.678950 TGTCACGGCAGATGTCTTCA 59.321 50.000 0.00 0.00 0.00 3.02
2521 2677 1.276138 TGTCACGGCAGATGTCTTCAT 59.724 47.619 0.00 0.00 36.95 2.57
2522 2678 1.662629 GTCACGGCAGATGTCTTCATG 59.337 52.381 0.00 0.00 34.06 3.07
2523 2679 1.012086 CACGGCAGATGTCTTCATGG 58.988 55.000 0.00 0.00 34.06 3.66
2524 2680 0.904649 ACGGCAGATGTCTTCATGGA 59.095 50.000 0.00 0.00 34.06 3.41
2525 2681 1.278985 ACGGCAGATGTCTTCATGGAA 59.721 47.619 0.00 0.00 34.06 3.53
2526 2682 1.938577 CGGCAGATGTCTTCATGGAAG 59.061 52.381 0.00 0.00 40.65 3.46
2527 2683 2.295885 GGCAGATGTCTTCATGGAAGG 58.704 52.381 6.17 0.00 39.82 3.46
2528 2684 2.092753 GGCAGATGTCTTCATGGAAGGA 60.093 50.000 6.17 0.00 39.82 3.36
2529 2685 2.941720 GCAGATGTCTTCATGGAAGGAC 59.058 50.000 6.17 4.50 39.82 3.85
2530 2686 3.370315 GCAGATGTCTTCATGGAAGGACT 60.370 47.826 6.17 0.00 39.82 3.85
2531 2687 4.841422 CAGATGTCTTCATGGAAGGACTT 58.159 43.478 6.17 2.69 39.82 3.01
2532 2688 5.627735 GCAGATGTCTTCATGGAAGGACTTA 60.628 44.000 6.17 0.00 39.82 2.24
2533 2689 6.590068 CAGATGTCTTCATGGAAGGACTTAT 58.410 40.000 6.17 0.00 39.82 1.73
2631 2787 2.415491 CGATTCGCCTATCTTGCCGATA 60.415 50.000 0.00 0.00 33.48 2.92
2681 2837 3.378742 CGGTACTCATACTCAACTGAGCT 59.621 47.826 6.63 0.00 45.79 4.09
2801 2957 2.689983 CCTTCAAGCACTCAAAACCACT 59.310 45.455 0.00 0.00 0.00 4.00
2844 3000 1.663695 CCAACTGTCGTGGAAGTGTT 58.336 50.000 0.00 0.00 0.00 3.32
2854 3010 3.449377 TCGTGGAAGTGTTATGGCAGATA 59.551 43.478 0.00 0.00 0.00 1.98
2858 3014 3.997021 GGAAGTGTTATGGCAGATATCCG 59.003 47.826 0.00 0.00 0.00 4.18
2859 3015 4.503296 GGAAGTGTTATGGCAGATATCCGT 60.503 45.833 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.817765 TTCATGTCTTATTCAAGTGGGAAC 57.182 37.500 0.00 0.00 33.20 3.62
11 12 7.451255 ACATTTCATGTCTTATTCAAGTGGGAA 59.549 33.333 0.00 0.00 39.92 3.97
12 13 6.947733 ACATTTCATGTCTTATTCAAGTGGGA 59.052 34.615 0.00 0.00 39.92 4.37
13 14 7.031372 CACATTTCATGTCTTATTCAAGTGGG 58.969 38.462 0.00 0.00 42.70 4.61
14 15 7.031372 CCACATTTCATGTCTTATTCAAGTGG 58.969 38.462 0.00 0.00 42.70 4.00
15 16 7.596494 ACCACATTTCATGTCTTATTCAAGTG 58.404 34.615 0.00 0.00 42.70 3.16
16 17 7.667219 AGACCACATTTCATGTCTTATTCAAGT 59.333 33.333 0.00 0.00 42.70 3.16
17 18 8.048534 AGACCACATTTCATGTCTTATTCAAG 57.951 34.615 0.00 0.00 42.70 3.02
18 19 7.665145 TGAGACCACATTTCATGTCTTATTCAA 59.335 33.333 0.00 0.00 42.70 2.69
19 20 7.167535 TGAGACCACATTTCATGTCTTATTCA 58.832 34.615 0.00 0.00 42.70 2.57
20 21 7.615582 TGAGACCACATTTCATGTCTTATTC 57.384 36.000 0.00 0.00 42.70 1.75
21 22 8.408043 TTTGAGACCACATTTCATGTCTTATT 57.592 30.769 0.00 0.00 42.70 1.40
22 23 8.464404 CATTTGAGACCACATTTCATGTCTTAT 58.536 33.333 0.00 0.00 42.70 1.73
23 24 7.094248 CCATTTGAGACCACATTTCATGTCTTA 60.094 37.037 0.00 0.00 42.70 2.10
24 25 6.294899 CCATTTGAGACCACATTTCATGTCTT 60.295 38.462 0.00 0.00 42.70 3.01
25 26 5.184479 CCATTTGAGACCACATTTCATGTCT 59.816 40.000 0.00 0.00 42.70 3.41
26 27 5.404946 CCATTTGAGACCACATTTCATGTC 58.595 41.667 0.00 0.00 42.70 3.06
27 28 4.221262 CCCATTTGAGACCACATTTCATGT 59.779 41.667 0.00 0.00 46.22 3.21
28 29 4.221262 ACCCATTTGAGACCACATTTCATG 59.779 41.667 0.00 0.00 0.00 3.07
29 30 4.419282 ACCCATTTGAGACCACATTTCAT 58.581 39.130 0.00 0.00 0.00 2.57
30 31 3.843422 ACCCATTTGAGACCACATTTCA 58.157 40.909 0.00 0.00 0.00 2.69
31 32 4.871933 AACCCATTTGAGACCACATTTC 57.128 40.909 0.00 0.00 0.00 2.17
42 43 7.473177 GCTAACCCTTAGTCAAACCCATTTGA 61.473 42.308 0.00 0.00 43.94 2.69
43 44 5.336451 GCTAACCCTTAGTCAAACCCATTTG 60.336 44.000 0.00 0.00 38.98 2.32
44 45 4.770531 GCTAACCCTTAGTCAAACCCATTT 59.229 41.667 0.00 0.00 35.66 2.32
45 46 4.044191 AGCTAACCCTTAGTCAAACCCATT 59.956 41.667 0.00 0.00 35.66 3.16
46 47 3.591977 AGCTAACCCTTAGTCAAACCCAT 59.408 43.478 0.00 0.00 35.66 4.00
47 48 2.983898 AGCTAACCCTTAGTCAAACCCA 59.016 45.455 0.00 0.00 35.66 4.51
48 49 3.715638 AGCTAACCCTTAGTCAAACCC 57.284 47.619 0.00 0.00 35.66 4.11
49 50 6.985059 CACTATAGCTAACCCTTAGTCAAACC 59.015 42.308 0.00 0.00 35.66 3.27
50 51 6.479331 GCACTATAGCTAACCCTTAGTCAAAC 59.521 42.308 0.00 0.00 35.66 2.93
51 52 6.155565 TGCACTATAGCTAACCCTTAGTCAAA 59.844 38.462 0.00 0.00 35.66 2.69
52 53 5.659525 TGCACTATAGCTAACCCTTAGTCAA 59.340 40.000 0.00 0.00 35.66 3.18
53 54 5.205821 TGCACTATAGCTAACCCTTAGTCA 58.794 41.667 0.00 0.00 35.66 3.41
54 55 5.786264 TGCACTATAGCTAACCCTTAGTC 57.214 43.478 0.00 0.00 35.66 2.59
55 56 5.839063 TCATGCACTATAGCTAACCCTTAGT 59.161 40.000 0.00 0.00 35.66 2.24
56 57 6.346477 TCATGCACTATAGCTAACCCTTAG 57.654 41.667 0.00 0.00 36.32 2.18
57 58 6.099125 TGTTCATGCACTATAGCTAACCCTTA 59.901 38.462 0.00 0.00 34.99 2.69
58 59 5.104527 TGTTCATGCACTATAGCTAACCCTT 60.105 40.000 0.00 0.00 34.99 3.95
59 60 4.408921 TGTTCATGCACTATAGCTAACCCT 59.591 41.667 0.00 0.00 34.99 4.34
60 61 4.703897 TGTTCATGCACTATAGCTAACCC 58.296 43.478 0.00 0.00 34.99 4.11
61 62 5.360591 ACTGTTCATGCACTATAGCTAACC 58.639 41.667 0.00 0.00 34.99 2.85
62 63 6.910536 AACTGTTCATGCACTATAGCTAAC 57.089 37.500 0.00 0.00 34.99 2.34
63 64 9.443323 TTTAAACTGTTCATGCACTATAGCTAA 57.557 29.630 0.00 0.00 34.99 3.09
64 65 9.098355 CTTTAAACTGTTCATGCACTATAGCTA 57.902 33.333 0.00 0.00 34.99 3.32
65 66 7.607991 ACTTTAAACTGTTCATGCACTATAGCT 59.392 33.333 0.00 0.00 34.99 3.32
66 67 7.752695 ACTTTAAACTGTTCATGCACTATAGC 58.247 34.615 0.00 0.00 0.00 2.97
69 70 9.231297 ACATACTTTAAACTGTTCATGCACTAT 57.769 29.630 0.00 0.00 0.00 2.12
70 71 8.503196 CACATACTTTAAACTGTTCATGCACTA 58.497 33.333 0.00 0.00 0.00 2.74
71 72 7.228507 TCACATACTTTAAACTGTTCATGCACT 59.771 33.333 0.00 0.00 0.00 4.40
72 73 7.359595 TCACATACTTTAAACTGTTCATGCAC 58.640 34.615 0.00 0.00 0.00 4.57
73 74 7.503521 TCACATACTTTAAACTGTTCATGCA 57.496 32.000 0.00 0.00 0.00 3.96
74 75 8.970691 AATCACATACTTTAAACTGTTCATGC 57.029 30.769 0.00 0.00 0.00 4.06
113 114 0.530870 CCGGCTTTTTCCCGCAAAAA 60.531 50.000 0.00 3.94 44.27 1.94
114 115 1.068250 CCGGCTTTTTCCCGCAAAA 59.932 52.632 0.00 0.00 44.27 2.44
115 116 2.128507 ACCGGCTTTTTCCCGCAAA 61.129 52.632 0.00 0.00 44.27 3.68
116 117 2.519780 ACCGGCTTTTTCCCGCAA 60.520 55.556 0.00 0.00 44.27 4.85
117 118 3.291383 CACCGGCTTTTTCCCGCA 61.291 61.111 0.00 0.00 44.27 5.69
118 119 1.873270 AATCACCGGCTTTTTCCCGC 61.873 55.000 0.00 0.00 44.27 6.13
119 120 0.170339 GAATCACCGGCTTTTTCCCG 59.830 55.000 0.00 0.00 45.17 5.14
120 121 1.202348 CTGAATCACCGGCTTTTTCCC 59.798 52.381 0.00 0.00 0.00 3.97
121 122 2.159382 TCTGAATCACCGGCTTTTTCC 58.841 47.619 0.00 0.00 0.00 3.13
122 123 2.162408 CCTCTGAATCACCGGCTTTTTC 59.838 50.000 0.00 0.22 0.00 2.29
123 124 2.162681 CCTCTGAATCACCGGCTTTTT 58.837 47.619 0.00 0.00 0.00 1.94
124 125 1.351017 TCCTCTGAATCACCGGCTTTT 59.649 47.619 0.00 0.00 0.00 2.27
125 126 0.984230 TCCTCTGAATCACCGGCTTT 59.016 50.000 0.00 0.00 0.00 3.51
126 127 0.539051 CTCCTCTGAATCACCGGCTT 59.461 55.000 0.00 0.00 0.00 4.35
127 128 0.616111 ACTCCTCTGAATCACCGGCT 60.616 55.000 0.00 0.00 0.00 5.52
128 129 1.067821 CTACTCCTCTGAATCACCGGC 59.932 57.143 0.00 0.00 0.00 6.13
129 130 2.656002 TCTACTCCTCTGAATCACCGG 58.344 52.381 0.00 0.00 0.00 5.28
196 197 2.404265 TTTTGCATGCTTCACGAGTG 57.596 45.000 20.33 0.00 0.00 3.51
222 223 2.535012 TGTGTGACATGTCGCCTAAA 57.465 45.000 31.02 13.97 39.23 1.85
264 272 1.433879 CCGGACCGATGAGACTGAC 59.566 63.158 17.49 0.00 0.00 3.51
313 321 1.303309 GCCATGTCACCATCAGCTAC 58.697 55.000 0.00 0.00 0.00 3.58
430 450 1.332686 GAATTAAATCGTCCCGGGCAC 59.667 52.381 18.49 14.30 0.00 5.01
479 499 6.959639 AAAGTAAGACAATTTTCTCTGGCA 57.040 33.333 0.00 0.00 0.00 4.92
510 531 9.809395 ACTACCAACAGCAGAATATATAGTAGA 57.191 33.333 0.00 0.00 0.00 2.59
511 532 9.847706 CACTACCAACAGCAGAATATATAGTAG 57.152 37.037 0.00 0.00 0.00 2.57
580 647 0.806868 CGTGGACTCGGCTACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
623 690 2.838736 CAGTACCAAAGTCTGCACACT 58.161 47.619 0.00 0.00 0.00 3.55
704 773 1.921857 GGGAGGGGGTCCTTCGAAA 60.922 63.158 0.00 0.00 46.06 3.46
731 800 2.045561 TGATGTGGACGTGTTGGTTT 57.954 45.000 0.00 0.00 0.00 3.27
735 804 3.487207 CGAGATATGATGTGGACGTGTTG 59.513 47.826 0.00 0.00 0.00 3.33
774 843 1.299850 TCGCGTGGACTTGTGTGAG 60.300 57.895 5.77 0.00 0.00 3.51
810 879 3.901797 AAAGGTGGCGCCGAGAAGG 62.902 63.158 23.90 0.00 43.70 3.46
811 880 1.515521 AAAAAGGTGGCGCCGAGAAG 61.516 55.000 23.90 0.00 43.70 2.85
812 881 1.527380 AAAAAGGTGGCGCCGAGAA 60.527 52.632 23.90 0.00 43.70 2.87
813 882 2.112297 AAAAAGGTGGCGCCGAGA 59.888 55.556 23.90 0.00 43.70 4.04
1050 1167 2.991076 GCTCTACAGTGCGGGTCGT 61.991 63.158 0.00 0.00 0.00 4.34
1076 1197 2.809601 GCCGTCGCTGTGGTGTAG 60.810 66.667 0.00 0.00 0.00 2.74
1528 1666 2.585869 GCACGTCGACACCAGTGTG 61.586 63.158 17.16 14.61 45.05 3.82
1618 1756 2.045926 GGACATGTCCGCTGCCTT 60.046 61.111 28.52 0.00 40.36 4.35
1989 2127 0.723414 CGTCGCAGTACTCGAGGTTA 59.277 55.000 18.41 0.00 37.16 2.85
2171 2309 8.579863 GGGATACTATATGCTTTTTGATGCTTT 58.420 33.333 0.00 0.00 0.00 3.51
2172 2310 7.725397 TGGGATACTATATGCTTTTTGATGCTT 59.275 33.333 0.00 0.00 0.00 3.91
2174 2312 7.040478 TGTGGGATACTATATGCTTTTTGATGC 60.040 37.037 0.00 0.00 0.00 3.91
2175 2313 8.292448 GTGTGGGATACTATATGCTTTTTGATG 58.708 37.037 0.00 0.00 0.00 3.07
2176 2314 7.173218 CGTGTGGGATACTATATGCTTTTTGAT 59.827 37.037 0.00 0.00 0.00 2.57
2177 2315 6.481976 CGTGTGGGATACTATATGCTTTTTGA 59.518 38.462 0.00 0.00 0.00 2.69
2178 2316 6.260050 ACGTGTGGGATACTATATGCTTTTTG 59.740 38.462 0.00 0.00 0.00 2.44
2179 2317 6.260050 CACGTGTGGGATACTATATGCTTTTT 59.740 38.462 7.58 0.00 0.00 1.94
2245 2394 4.902443 ACTCACACATACTAGGTCGATG 57.098 45.455 0.00 0.00 0.00 3.84
2254 2403 5.204409 TGGACGTAAAACTCACACATACT 57.796 39.130 0.00 0.00 0.00 2.12
2255 2404 7.766219 ATATGGACGTAAAACTCACACATAC 57.234 36.000 0.00 0.00 0.00 2.39
2305 2458 1.310933 ATAACAGACGAGGCGACCGT 61.311 55.000 4.39 4.39 43.56 4.83
2389 2545 0.656259 CTGATCACGAATGCTGCTGG 59.344 55.000 0.00 0.00 0.00 4.85
2424 2580 8.498575 TCCCATGATTATGAGTGGTTATTACAA 58.501 33.333 0.00 0.00 36.36 2.41
2436 2592 5.125900 TGCAAACACTTCCCATGATTATGAG 59.874 40.000 0.00 0.00 36.36 2.90
2463 2619 8.042515 ACAATGGCTAAATTTTGCATAATCAGT 58.957 29.630 22.87 10.01 0.00 3.41
2464 2620 8.428186 ACAATGGCTAAATTTTGCATAATCAG 57.572 30.769 22.87 12.67 0.00 2.90
2480 2636 3.249799 CACTTTCACGACAACAATGGCTA 59.750 43.478 0.00 0.00 29.70 3.93
2495 2651 1.202639 ACATCTGCCGTGACACTTTCA 60.203 47.619 3.68 0.00 0.00 2.69
2496 2652 1.461127 GACATCTGCCGTGACACTTTC 59.539 52.381 3.68 0.00 0.00 2.62
2497 2653 1.070758 AGACATCTGCCGTGACACTTT 59.929 47.619 3.68 0.00 0.00 2.66
2498 2654 0.681733 AGACATCTGCCGTGACACTT 59.318 50.000 3.68 0.00 0.00 3.16
2499 2655 0.681733 AAGACATCTGCCGTGACACT 59.318 50.000 3.68 0.00 0.00 3.55
2500 2656 1.071605 GAAGACATCTGCCGTGACAC 58.928 55.000 0.00 0.00 0.00 3.67
2501 2657 0.678950 TGAAGACATCTGCCGTGACA 59.321 50.000 0.00 0.00 0.00 3.58
2502 2658 1.662629 CATGAAGACATCTGCCGTGAC 59.337 52.381 0.00 0.00 34.15 3.67
2503 2659 1.405933 CCATGAAGACATCTGCCGTGA 60.406 52.381 0.00 0.00 34.15 4.35
2504 2660 1.012086 CCATGAAGACATCTGCCGTG 58.988 55.000 0.00 0.00 34.15 4.94
2505 2661 0.904649 TCCATGAAGACATCTGCCGT 59.095 50.000 0.00 0.00 34.15 5.68
2506 2662 1.938577 CTTCCATGAAGACATCTGCCG 59.061 52.381 0.00 0.00 41.71 5.69
2507 2663 2.092753 TCCTTCCATGAAGACATCTGCC 60.093 50.000 5.43 0.00 41.71 4.85
2508 2664 2.941720 GTCCTTCCATGAAGACATCTGC 59.058 50.000 5.43 0.00 41.71 4.26
2509 2665 4.484537 AGTCCTTCCATGAAGACATCTG 57.515 45.455 5.43 0.00 41.71 2.90
2510 2666 6.821616 ATAAGTCCTTCCATGAAGACATCT 57.178 37.500 5.43 0.00 41.71 2.90
2511 2667 6.261826 CCAATAAGTCCTTCCATGAAGACATC 59.738 42.308 5.43 0.00 41.71 3.06
2512 2668 6.125029 CCAATAAGTCCTTCCATGAAGACAT 58.875 40.000 5.43 0.00 41.71 3.06
2513 2669 5.014123 ACCAATAAGTCCTTCCATGAAGACA 59.986 40.000 5.43 0.00 41.71 3.41
2514 2670 5.355350 CACCAATAAGTCCTTCCATGAAGAC 59.645 44.000 5.43 0.00 41.71 3.01
2515 2671 5.500234 CACCAATAAGTCCTTCCATGAAGA 58.500 41.667 5.43 0.00 41.71 2.87
2516 2672 4.641989 CCACCAATAAGTCCTTCCATGAAG 59.358 45.833 0.00 0.00 39.17 3.02
2517 2673 4.569653 CCCACCAATAAGTCCTTCCATGAA 60.570 45.833 0.00 0.00 0.00 2.57
2518 2674 3.053693 CCCACCAATAAGTCCTTCCATGA 60.054 47.826 0.00 0.00 0.00 3.07
2519 2675 3.290710 CCCACCAATAAGTCCTTCCATG 58.709 50.000 0.00 0.00 0.00 3.66
2520 2676 2.926329 ACCCACCAATAAGTCCTTCCAT 59.074 45.455 0.00 0.00 0.00 3.41
2521 2677 2.354328 ACCCACCAATAAGTCCTTCCA 58.646 47.619 0.00 0.00 0.00 3.53
2522 2678 3.089284 CAACCCACCAATAAGTCCTTCC 58.911 50.000 0.00 0.00 0.00 3.46
2523 2679 4.028993 TCAACCCACCAATAAGTCCTTC 57.971 45.455 0.00 0.00 0.00 3.46
2524 2680 4.141018 AGTTCAACCCACCAATAAGTCCTT 60.141 41.667 0.00 0.00 0.00 3.36
2525 2681 3.397955 AGTTCAACCCACCAATAAGTCCT 59.602 43.478 0.00 0.00 0.00 3.85
2526 2682 3.756963 GAGTTCAACCCACCAATAAGTCC 59.243 47.826 0.00 0.00 0.00 3.85
2527 2683 3.435671 CGAGTTCAACCCACCAATAAGTC 59.564 47.826 0.00 0.00 0.00 3.01
2528 2684 3.408634 CGAGTTCAACCCACCAATAAGT 58.591 45.455 0.00 0.00 0.00 2.24
2529 2685 2.747446 CCGAGTTCAACCCACCAATAAG 59.253 50.000 0.00 0.00 0.00 1.73
2530 2686 2.553466 CCCGAGTTCAACCCACCAATAA 60.553 50.000 0.00 0.00 0.00 1.40
2531 2687 1.003812 CCCGAGTTCAACCCACCAATA 59.996 52.381 0.00 0.00 0.00 1.90
2532 2688 0.251165 CCCGAGTTCAACCCACCAAT 60.251 55.000 0.00 0.00 0.00 3.16
2533 2689 1.149627 CCCGAGTTCAACCCACCAA 59.850 57.895 0.00 0.00 0.00 3.67
2619 2775 3.382227 TCCACGTCTTTATCGGCAAGATA 59.618 43.478 0.00 0.00 40.66 1.98
2631 2787 1.740296 CGGCGGAATCCACGTCTTT 60.740 57.895 0.00 0.00 33.04 2.52
2665 2821 1.208052 GGCCAGCTCAGTTGAGTATGA 59.792 52.381 10.57 0.00 43.85 2.15
2788 2944 0.592247 GCGCACAGTGGTTTTGAGTG 60.592 55.000 0.30 0.00 0.00 3.51
2844 3000 4.405680 CCTTCCATACGGATATCTGCCATA 59.594 45.833 11.66 0.00 42.41 2.74
2854 3010 4.715297 ACAACTAAGTCCTTCCATACGGAT 59.285 41.667 0.00 0.00 42.41 4.18
2858 3014 5.416271 TCCACAACTAAGTCCTTCCATAC 57.584 43.478 0.00 0.00 0.00 2.39
2859 3015 4.081087 GCTCCACAACTAAGTCCTTCCATA 60.081 45.833 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.