Multiple sequence alignment - TraesCS1D01G256600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G256600 chr1D 100.000 2562 0 0 2557 5118 349185164 349187725 0.000000e+00 4732.0
1 TraesCS1D01G256600 chr1D 100.000 2314 0 0 1 2314 349182608 349184921 0.000000e+00 4274.0
2 TraesCS1D01G256600 chr1B 95.255 1981 65 13 2728 4687 470779289 470781261 0.000000e+00 3110.0
3 TraesCS1D01G256600 chr1B 87.489 2198 128 54 173 2312 470776910 470779018 0.000000e+00 2399.0
4 TraesCS1D01G256600 chr1B 81.520 487 52 20 1805 2276 232293699 232294162 2.910000e-97 366.0
5 TraesCS1D01G256600 chr1B 93.333 90 4 1 2570 2659 470779004 470779091 1.160000e-26 132.0
6 TraesCS1D01G256600 chr1B 96.552 58 1 1 2672 2729 470779212 470779268 1.520000e-15 95.3
7 TraesCS1D01G256600 chr1A 95.203 1501 39 14 2961 4428 449557265 449558765 0.000000e+00 2342.0
8 TraesCS1D01G256600 chr1A 85.169 1780 109 62 535 2276 449555207 449556869 0.000000e+00 1681.0
9 TraesCS1D01G256600 chr1A 82.482 411 50 12 4706 5099 449558895 449559300 1.760000e-89 340.0
10 TraesCS1D01G256600 chr1A 79.056 339 18 17 2572 2878 449556887 449557204 3.150000e-42 183.0
11 TraesCS1D01G256600 chr1A 100.000 39 0 0 4652 4690 449558878 449558916 7.110000e-09 73.1
12 TraesCS1D01G256600 chr3A 82.927 492 39 22 1805 2276 629105277 629105743 7.980000e-108 401.0
13 TraesCS1D01G256600 chr3A 84.559 272 20 8 2570 2835 629105753 629106008 3.060000e-62 250.0
14 TraesCS1D01G256600 chr7D 82.724 492 37 21 1805 2276 41763905 41763442 1.340000e-105 394.0
15 TraesCS1D01G256600 chr7D 80.392 153 20 10 3675 3822 199477702 199477555 1.950000e-19 108.0
16 TraesCS1D01G256600 chr7D 81.081 111 14 7 3738 3845 199426552 199426658 1.180000e-11 82.4
17 TraesCS1D01G256600 chr2D 82.317 492 41 25 1805 2276 645428276 645428741 8.040000e-103 385.0
18 TraesCS1D01G256600 chr2D 84.191 272 20 9 2570 2835 645428751 645429005 5.120000e-60 243.0
19 TraesCS1D01G256600 chr2D 87.143 70 7 2 4925 4992 469980167 469980236 1.530000e-10 78.7
20 TraesCS1D01G256600 chr7A 80.392 153 20 10 3675 3822 209402391 209402244 1.950000e-19 108.0
21 TraesCS1D01G256600 chr3D 70.923 650 136 42 3229 3859 7288400 7287785 2.520000e-18 104.0
22 TraesCS1D01G256600 chr6D 78.261 161 29 6 3737 3894 56552735 56552892 1.170000e-16 99.0
23 TraesCS1D01G256600 chr7B 86.517 89 6 6 3737 3822 164075280 164075195 5.460000e-15 93.5
24 TraesCS1D01G256600 chr2A 88.406 69 6 2 4926 4992 611283252 611283320 1.180000e-11 82.4
25 TraesCS1D01G256600 chr3B 82.500 80 10 4 3737 3814 9188502 9188425 3.310000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G256600 chr1D 349182608 349187725 5117 False 4503.000 4732 100.00000 1 5118 2 chr1D.!!$F1 5117
1 TraesCS1D01G256600 chr1B 470776910 470781261 4351 False 1434.075 3110 93.15725 173 4687 4 chr1B.!!$F2 4514
2 TraesCS1D01G256600 chr1A 449555207 449559300 4093 False 923.820 2342 88.38200 535 5099 5 chr1A.!!$F1 4564
3 TraesCS1D01G256600 chr3A 629105277 629106008 731 False 325.500 401 83.74300 1805 2835 2 chr3A.!!$F1 1030
4 TraesCS1D01G256600 chr2D 645428276 645429005 729 False 314.000 385 83.25400 1805 2835 2 chr2D.!!$F2 1030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 763 0.035152 AGTTTCGCTGGCATGATGGA 60.035 50.0 0.00 0.00 0.00 3.41 F
721 766 0.180878 TTCGCTGGCATGATGGATGA 59.819 50.0 0.00 0.00 33.31 2.92 F
1292 1368 0.252197 AACTAACCGACTGGGCCATC 59.748 55.0 6.72 6.28 40.62 3.51 F
1596 1682 0.820871 AAAGGCTTTTCGTGTTGGCA 59.179 45.0 6.68 0.00 0.00 4.92 F
2835 3111 0.904649 CCCCAGTGATGCTCTGTACA 59.095 55.0 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1831 0.373024 CTAACGTCTCCTCGGTCGAC 59.627 60.000 7.13 7.13 34.94 4.20 R
1919 2027 1.132657 TCCTCTCCCCACCTACAAACA 60.133 52.381 0.00 0.00 0.00 2.83 R
2835 3111 0.546267 ACAGCTGGATCAGGGTGAGT 60.546 55.000 19.93 0.00 35.30 3.41 R
3223 3523 0.863538 CGGTGAGCGAGAAGATGACG 60.864 60.000 0.00 0.00 0.00 4.35 R
4821 5160 1.534729 AGCAGGAATTTCGTTGGACC 58.465 50.000 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.375014 ACCCCTTGGTGGTTGTTAAG 57.625 50.000 0.00 0.00 45.58 1.85
25 26 1.571936 ACCCCTTGGTGGTTGTTAAGT 59.428 47.619 0.00 0.00 45.58 2.24
26 27 2.023791 ACCCCTTGGTGGTTGTTAAGTT 60.024 45.455 0.00 0.00 45.58 2.66
27 28 3.035363 CCCCTTGGTGGTTGTTAAGTTT 58.965 45.455 0.00 0.00 0.00 2.66
28 29 3.181470 CCCCTTGGTGGTTGTTAAGTTTG 60.181 47.826 0.00 0.00 0.00 2.93
29 30 3.449377 CCCTTGGTGGTTGTTAAGTTTGT 59.551 43.478 0.00 0.00 0.00 2.83
30 31 4.429108 CCTTGGTGGTTGTTAAGTTTGTG 58.571 43.478 0.00 0.00 0.00 3.33
31 32 4.081917 CCTTGGTGGTTGTTAAGTTTGTGT 60.082 41.667 0.00 0.00 0.00 3.72
32 33 5.470047 TTGGTGGTTGTTAAGTTTGTGTT 57.530 34.783 0.00 0.00 0.00 3.32
33 34 5.470047 TGGTGGTTGTTAAGTTTGTGTTT 57.530 34.783 0.00 0.00 0.00 2.83
34 35 5.230942 TGGTGGTTGTTAAGTTTGTGTTTG 58.769 37.500 0.00 0.00 0.00 2.93
35 36 5.221461 TGGTGGTTGTTAAGTTTGTGTTTGT 60.221 36.000 0.00 0.00 0.00 2.83
36 37 5.346551 GGTGGTTGTTAAGTTTGTGTTTGTC 59.653 40.000 0.00 0.00 0.00 3.18
37 38 5.346551 GTGGTTGTTAAGTTTGTGTTTGTCC 59.653 40.000 0.00 0.00 0.00 4.02
38 39 5.010719 TGGTTGTTAAGTTTGTGTTTGTCCA 59.989 36.000 0.00 0.00 0.00 4.02
39 40 5.927115 GGTTGTTAAGTTTGTGTTTGTCCAA 59.073 36.000 0.00 0.00 0.00 3.53
40 41 6.090223 GGTTGTTAAGTTTGTGTTTGTCCAAG 59.910 38.462 0.00 0.00 0.00 3.61
41 42 5.715070 TGTTAAGTTTGTGTTTGTCCAAGG 58.285 37.500 0.00 0.00 0.00 3.61
42 43 2.959507 AGTTTGTGTTTGTCCAAGGC 57.040 45.000 0.00 0.00 0.00 4.35
43 44 1.134175 AGTTTGTGTTTGTCCAAGGCG 59.866 47.619 0.00 0.00 0.00 5.52
44 45 1.133407 GTTTGTGTTTGTCCAAGGCGA 59.867 47.619 0.00 0.00 0.00 5.54
45 46 1.464734 TTGTGTTTGTCCAAGGCGAA 58.535 45.000 0.00 0.00 0.00 4.70
46 47 1.021202 TGTGTTTGTCCAAGGCGAAG 58.979 50.000 0.00 0.00 0.00 3.79
47 48 1.021968 GTGTTTGTCCAAGGCGAAGT 58.978 50.000 0.00 0.00 0.00 3.01
48 49 1.002792 GTGTTTGTCCAAGGCGAAGTC 60.003 52.381 0.00 0.00 0.00 3.01
49 50 0.234884 GTTTGTCCAAGGCGAAGTCG 59.765 55.000 0.00 0.00 36.95 4.18
50 51 0.105224 TTTGTCCAAGGCGAAGTCGA 59.895 50.000 4.59 0.00 43.02 4.20
51 52 0.105224 TTGTCCAAGGCGAAGTCGAA 59.895 50.000 4.59 0.00 43.02 3.71
52 53 0.319555 TGTCCAAGGCGAAGTCGAAG 60.320 55.000 4.59 0.00 43.02 3.79
53 54 0.319641 GTCCAAGGCGAAGTCGAAGT 60.320 55.000 4.59 0.00 43.02 3.01
54 55 1.068055 GTCCAAGGCGAAGTCGAAGTA 60.068 52.381 4.59 0.00 43.02 2.24
55 56 1.822990 TCCAAGGCGAAGTCGAAGTAT 59.177 47.619 4.59 0.00 43.02 2.12
56 57 1.927174 CCAAGGCGAAGTCGAAGTATG 59.073 52.381 4.59 0.00 43.02 2.39
57 58 1.927174 CAAGGCGAAGTCGAAGTATGG 59.073 52.381 4.59 0.00 43.02 2.74
58 59 1.471119 AGGCGAAGTCGAAGTATGGA 58.529 50.000 4.59 0.00 43.02 3.41
59 60 1.405821 AGGCGAAGTCGAAGTATGGAG 59.594 52.381 4.59 0.00 43.02 3.86
60 61 1.536284 GGCGAAGTCGAAGTATGGAGG 60.536 57.143 4.59 0.00 43.02 4.30
61 62 1.404391 GCGAAGTCGAAGTATGGAGGA 59.596 52.381 4.59 0.00 43.02 3.71
62 63 2.034812 GCGAAGTCGAAGTATGGAGGAT 59.965 50.000 4.59 0.00 43.02 3.24
63 64 3.633235 CGAAGTCGAAGTATGGAGGATG 58.367 50.000 0.00 0.00 43.02 3.51
64 65 3.385577 GAAGTCGAAGTATGGAGGATGC 58.614 50.000 0.00 0.00 0.00 3.91
65 66 1.689273 AGTCGAAGTATGGAGGATGCC 59.311 52.381 0.00 0.00 0.00 4.40
66 67 1.689273 GTCGAAGTATGGAGGATGCCT 59.311 52.381 0.00 0.00 36.03 4.75
67 68 2.891580 GTCGAAGTATGGAGGATGCCTA 59.108 50.000 0.00 0.00 31.76 3.93
68 69 3.057174 GTCGAAGTATGGAGGATGCCTAG 60.057 52.174 0.00 0.00 31.76 3.02
69 70 2.232452 CGAAGTATGGAGGATGCCTAGG 59.768 54.545 3.67 3.67 31.76 3.02
70 71 3.511477 GAAGTATGGAGGATGCCTAGGA 58.489 50.000 14.75 0.00 31.76 2.94
71 72 3.862600 AGTATGGAGGATGCCTAGGAT 57.137 47.619 14.75 2.90 31.76 3.24
72 73 3.448934 AGTATGGAGGATGCCTAGGATG 58.551 50.000 14.75 0.00 31.76 3.51
73 74 2.429933 ATGGAGGATGCCTAGGATGT 57.570 50.000 14.75 0.00 31.76 3.06
74 75 1.722034 TGGAGGATGCCTAGGATGTC 58.278 55.000 14.75 6.45 31.76 3.06
75 76 0.980423 GGAGGATGCCTAGGATGTCC 59.020 60.000 14.75 15.49 31.76 4.02
77 78 2.022718 AGGATGCCTAGGATGTCCTC 57.977 55.000 14.75 0.00 44.77 3.71
78 79 0.605589 GGATGCCTAGGATGTCCTCG 59.394 60.000 14.75 0.00 44.77 4.63
79 80 0.037790 GATGCCTAGGATGTCCTCGC 60.038 60.000 14.75 9.17 44.77 5.03
80 81 0.470833 ATGCCTAGGATGTCCTCGCT 60.471 55.000 14.75 5.47 44.77 4.93
81 82 0.687757 TGCCTAGGATGTCCTCGCTT 60.688 55.000 14.75 0.00 44.77 4.68
82 83 0.249657 GCCTAGGATGTCCTCGCTTG 60.250 60.000 14.75 0.00 44.77 4.01
83 84 0.390860 CCTAGGATGTCCTCGCTTGG 59.609 60.000 1.05 0.00 44.77 3.61
84 85 0.249657 CTAGGATGTCCTCGCTTGGC 60.250 60.000 4.51 0.00 44.77 4.52
95 96 4.179579 GCTTGGCGCCGTTGATCC 62.180 66.667 23.90 1.38 0.00 3.36
96 97 3.864686 CTTGGCGCCGTTGATCCG 61.865 66.667 23.90 0.00 0.00 4.18
103 104 4.371975 CCGTTGATCCGGTTGTGT 57.628 55.556 0.00 0.00 43.07 3.72
104 105 1.866237 CCGTTGATCCGGTTGTGTG 59.134 57.895 0.00 0.00 43.07 3.82
105 106 0.882927 CCGTTGATCCGGTTGTGTGT 60.883 55.000 0.00 0.00 43.07 3.72
106 107 0.941542 CGTTGATCCGGTTGTGTGTT 59.058 50.000 0.00 0.00 0.00 3.32
107 108 1.333702 CGTTGATCCGGTTGTGTGTTG 60.334 52.381 0.00 0.00 0.00 3.33
108 109 1.001815 GTTGATCCGGTTGTGTGTTGG 60.002 52.381 0.00 0.00 0.00 3.77
109 110 0.181587 TGATCCGGTTGTGTGTTGGT 59.818 50.000 0.00 0.00 0.00 3.67
110 111 1.314730 GATCCGGTTGTGTGTTGGTT 58.685 50.000 0.00 0.00 0.00 3.67
111 112 1.001815 GATCCGGTTGTGTGTTGGTTG 60.002 52.381 0.00 0.00 0.00 3.77
112 113 0.322636 TCCGGTTGTGTGTTGGTTGT 60.323 50.000 0.00 0.00 0.00 3.32
113 114 0.179150 CCGGTTGTGTGTTGGTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
114 115 0.523966 CGGTTGTGTGTTGGTTGTGT 59.476 50.000 0.00 0.00 0.00 3.72
115 116 1.466697 CGGTTGTGTGTTGGTTGTGTC 60.467 52.381 0.00 0.00 0.00 3.67
116 117 1.466697 GGTTGTGTGTTGGTTGTGTCG 60.467 52.381 0.00 0.00 0.00 4.35
117 118 1.198178 GTTGTGTGTTGGTTGTGTCGT 59.802 47.619 0.00 0.00 0.00 4.34
118 119 0.799393 TGTGTGTTGGTTGTGTCGTG 59.201 50.000 0.00 0.00 0.00 4.35
119 120 0.522495 GTGTGTTGGTTGTGTCGTGC 60.522 55.000 0.00 0.00 0.00 5.34
120 121 1.297304 GTGTTGGTTGTGTCGTGCG 60.297 57.895 0.00 0.00 0.00 5.34
121 122 2.326550 GTTGGTTGTGTCGTGCGG 59.673 61.111 0.00 0.00 0.00 5.69
122 123 2.897846 TTGGTTGTGTCGTGCGGG 60.898 61.111 0.00 0.00 0.00 6.13
123 124 4.920112 TGGTTGTGTCGTGCGGGG 62.920 66.667 0.00 0.00 0.00 5.73
124 125 4.922026 GGTTGTGTCGTGCGGGGT 62.922 66.667 0.00 0.00 0.00 4.95
125 126 3.645975 GTTGTGTCGTGCGGGGTG 61.646 66.667 0.00 0.00 0.00 4.61
133 134 4.643387 GTGCGGGGTGCCTCTTGT 62.643 66.667 0.00 0.00 45.60 3.16
134 135 4.641645 TGCGGGGTGCCTCTTGTG 62.642 66.667 0.00 0.00 45.60 3.33
136 137 4.722700 CGGGGTGCCTCTTGTGGG 62.723 72.222 0.00 0.00 0.00 4.61
137 138 4.366684 GGGGTGCCTCTTGTGGGG 62.367 72.222 0.00 0.00 0.00 4.96
138 139 3.580319 GGGTGCCTCTTGTGGGGT 61.580 66.667 0.00 0.00 0.00 4.95
139 140 2.520968 GGTGCCTCTTGTGGGGTT 59.479 61.111 0.00 0.00 0.00 4.11
140 141 1.152546 GGTGCCTCTTGTGGGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
141 142 1.463553 GGTGCCTCTTGTGGGGTTTG 61.464 60.000 0.00 0.00 0.00 2.93
142 143 0.755327 GTGCCTCTTGTGGGGTTTGT 60.755 55.000 0.00 0.00 0.00 2.83
143 144 0.847373 TGCCTCTTGTGGGGTTTGTA 59.153 50.000 0.00 0.00 0.00 2.41
144 145 1.215673 TGCCTCTTGTGGGGTTTGTAA 59.784 47.619 0.00 0.00 0.00 2.41
145 146 2.158385 TGCCTCTTGTGGGGTTTGTAAT 60.158 45.455 0.00 0.00 0.00 1.89
146 147 2.492088 GCCTCTTGTGGGGTTTGTAATC 59.508 50.000 0.00 0.00 0.00 1.75
147 148 3.814316 GCCTCTTGTGGGGTTTGTAATCT 60.814 47.826 0.00 0.00 0.00 2.40
148 149 4.566907 GCCTCTTGTGGGGTTTGTAATCTA 60.567 45.833 0.00 0.00 0.00 1.98
149 150 5.186198 CCTCTTGTGGGGTTTGTAATCTAG 58.814 45.833 0.00 0.00 0.00 2.43
150 151 5.174037 TCTTGTGGGGTTTGTAATCTAGG 57.826 43.478 0.00 0.00 0.00 3.02
151 152 4.600111 TCTTGTGGGGTTTGTAATCTAGGT 59.400 41.667 0.00 0.00 0.00 3.08
152 153 5.073965 TCTTGTGGGGTTTGTAATCTAGGTT 59.926 40.000 0.00 0.00 0.00 3.50
153 154 4.913784 TGTGGGGTTTGTAATCTAGGTTC 58.086 43.478 0.00 0.00 0.00 3.62
154 155 4.600111 TGTGGGGTTTGTAATCTAGGTTCT 59.400 41.667 0.00 0.00 0.00 3.01
155 156 5.183969 GTGGGGTTTGTAATCTAGGTTCTC 58.816 45.833 0.00 0.00 0.00 2.87
156 157 4.081309 TGGGGTTTGTAATCTAGGTTCTCG 60.081 45.833 0.00 0.00 0.00 4.04
157 158 4.081254 GGGGTTTGTAATCTAGGTTCTCGT 60.081 45.833 0.00 0.00 0.00 4.18
158 159 5.485620 GGGTTTGTAATCTAGGTTCTCGTT 58.514 41.667 0.00 0.00 0.00 3.85
159 160 5.579904 GGGTTTGTAATCTAGGTTCTCGTTC 59.420 44.000 0.00 0.00 0.00 3.95
160 161 6.161381 GGTTTGTAATCTAGGTTCTCGTTCA 58.839 40.000 0.00 0.00 0.00 3.18
161 162 6.310711 GGTTTGTAATCTAGGTTCTCGTTCAG 59.689 42.308 0.00 0.00 0.00 3.02
162 163 6.585695 TTGTAATCTAGGTTCTCGTTCAGT 57.414 37.500 0.00 0.00 0.00 3.41
163 164 7.692460 TTGTAATCTAGGTTCTCGTTCAGTA 57.308 36.000 0.00 0.00 0.00 2.74
164 165 7.081526 TGTAATCTAGGTTCTCGTTCAGTAC 57.918 40.000 0.00 0.00 0.00 2.73
165 166 6.883217 TGTAATCTAGGTTCTCGTTCAGTACT 59.117 38.462 0.00 0.00 0.00 2.73
166 167 6.837471 AATCTAGGTTCTCGTTCAGTACTT 57.163 37.500 0.00 0.00 0.00 2.24
167 168 5.624344 TCTAGGTTCTCGTTCAGTACTTG 57.376 43.478 0.00 0.00 0.00 3.16
168 169 5.311265 TCTAGGTTCTCGTTCAGTACTTGA 58.689 41.667 0.00 0.00 0.00 3.02
169 170 4.506886 AGGTTCTCGTTCAGTACTTGAG 57.493 45.455 0.00 0.00 37.07 3.02
170 171 2.987821 GGTTCTCGTTCAGTACTTGAGC 59.012 50.000 0.00 0.00 37.07 4.26
171 172 3.305471 GGTTCTCGTTCAGTACTTGAGCT 60.305 47.826 0.00 0.00 37.07 4.09
180 181 4.371786 TCAGTACTTGAGCTGTCAACTTG 58.628 43.478 0.00 0.00 37.79 3.16
181 182 3.059325 CAGTACTTGAGCTGTCAACTTGC 60.059 47.826 0.00 0.00 37.79 4.01
187 188 1.534595 GAGCTGTCAACTTGCTCCTTG 59.465 52.381 13.72 0.00 45.12 3.61
189 190 1.265365 GCTGTCAACTTGCTCCTTGTC 59.735 52.381 0.00 0.00 0.00 3.18
191 192 2.945008 CTGTCAACTTGCTCCTTGTCAA 59.055 45.455 0.00 0.00 0.00 3.18
198 199 6.660521 TCAACTTGCTCCTTGTCAATTATGAT 59.339 34.615 0.00 0.00 38.01 2.45
204 205 7.315142 TGCTCCTTGTCAATTATGATGAAAAC 58.685 34.615 0.00 0.00 38.01 2.43
229 230 9.199982 ACGATAAATCTTTTGTCTCGTTTAGAA 57.800 29.630 0.00 0.00 35.47 2.10
237 238 9.663904 TCTTTTGTCTCGTTTAGAATGAAAATG 57.336 29.630 0.00 0.00 35.47 2.32
238 239 7.851822 TTTGTCTCGTTTAGAATGAAAATGC 57.148 32.000 0.00 0.00 35.47 3.56
239 240 6.552859 TGTCTCGTTTAGAATGAAAATGCA 57.447 33.333 0.00 0.00 35.47 3.96
240 241 6.370593 TGTCTCGTTTAGAATGAAAATGCAC 58.629 36.000 0.00 0.00 35.47 4.57
242 243 6.521133 GTCTCGTTTAGAATGAAAATGCACAG 59.479 38.462 0.00 0.00 35.47 3.66
243 244 5.153513 TCGTTTAGAATGAAAATGCACAGC 58.846 37.500 0.00 0.00 0.00 4.40
244 245 4.916831 CGTTTAGAATGAAAATGCACAGCA 59.083 37.500 0.00 0.00 44.86 4.41
245 246 5.060077 CGTTTAGAATGAAAATGCACAGCAG 59.940 40.000 0.00 0.00 43.65 4.24
246 247 2.955614 AGAATGAAAATGCACAGCAGC 58.044 42.857 0.00 0.00 43.65 5.25
261 262 1.006571 CAGCAAGCCAGCAACCAAG 60.007 57.895 0.55 0.00 36.85 3.61
269 270 0.821711 CCAGCAACCAAGGTTTCCGA 60.822 55.000 0.79 0.00 36.00 4.55
271 272 1.001378 CAGCAACCAAGGTTTCCGAAG 60.001 52.381 0.79 0.00 36.00 3.79
272 273 0.313987 GCAACCAAGGTTTCCGAAGG 59.686 55.000 0.79 0.00 43.20 3.46
313 314 4.410400 GAGCCACCCCACCGGAAG 62.410 72.222 9.46 0.00 34.64 3.46
337 363 3.694889 CACATGATGTGCAGTGCAG 57.305 52.632 20.42 8.24 41.89 4.41
342 368 1.970114 GATGTGCAGTGCAGCAGGT 60.970 57.895 20.42 5.83 46.69 4.00
345 371 2.031616 TGCAGTGCAGCAGGTCTC 59.968 61.111 15.37 0.00 40.11 3.36
346 372 2.745492 GCAGTGCAGCAGGTCTCC 60.745 66.667 11.09 0.00 0.00 3.71
376 402 1.300971 TGCGGTGCAGAAGATCAAGC 61.301 55.000 0.00 0.00 33.32 4.01
457 490 4.256180 CCGGATGGGCTACCCTGC 62.256 72.222 0.00 0.00 45.70 4.85
458 491 4.609018 CGGATGGGCTACCCTGCG 62.609 72.222 3.93 3.23 45.70 5.18
468 501 1.003839 TACCCTGCGCAACTTCTGG 60.004 57.895 13.05 7.98 0.00 3.86
472 505 1.298859 CCTGCGCAACTTCTGGTACC 61.299 60.000 13.05 4.43 0.00 3.34
475 508 0.882927 GCGCAACTTCTGGTACCACA 60.883 55.000 11.60 0.00 0.00 4.17
496 529 2.041115 TCCTCCTCGCTCTGACACG 61.041 63.158 0.00 0.00 0.00 4.49
717 762 0.099968 CAGTTTCGCTGGCATGATGG 59.900 55.000 0.00 0.00 41.42 3.51
718 763 0.035152 AGTTTCGCTGGCATGATGGA 60.035 50.000 0.00 0.00 0.00 3.41
719 764 1.027357 GTTTCGCTGGCATGATGGAT 58.973 50.000 0.00 0.00 0.00 3.41
720 765 1.026584 TTTCGCTGGCATGATGGATG 58.973 50.000 0.00 0.00 34.84 3.51
721 766 0.180878 TTCGCTGGCATGATGGATGA 59.819 50.000 0.00 0.00 33.31 2.92
722 767 0.399075 TCGCTGGCATGATGGATGAT 59.601 50.000 0.00 0.00 33.31 2.45
723 768 0.521735 CGCTGGCATGATGGATGATG 59.478 55.000 0.00 0.00 33.31 3.07
724 769 0.888619 GCTGGCATGATGGATGATGG 59.111 55.000 0.00 0.00 33.31 3.51
725 770 1.546998 GCTGGCATGATGGATGATGGA 60.547 52.381 0.00 0.00 33.31 3.41
726 771 2.884304 GCTGGCATGATGGATGATGGAT 60.884 50.000 0.00 0.00 33.31 3.41
727 772 2.755103 CTGGCATGATGGATGATGGATG 59.245 50.000 0.00 0.00 33.31 3.51
728 773 2.100197 GGCATGATGGATGATGGATGG 58.900 52.381 0.00 0.00 33.31 3.51
729 774 2.100197 GCATGATGGATGATGGATGGG 58.900 52.381 0.00 0.00 33.31 4.00
730 775 2.291346 GCATGATGGATGATGGATGGGA 60.291 50.000 0.00 0.00 33.31 4.37
731 776 3.627492 GCATGATGGATGATGGATGGGAT 60.627 47.826 0.00 0.00 33.31 3.85
732 777 3.732048 TGATGGATGATGGATGGGATG 57.268 47.619 0.00 0.00 0.00 3.51
881 942 2.336478 CGAGCCAGGACTGACGACT 61.336 63.158 0.00 0.00 0.00 4.18
896 957 1.309499 CGACTGCGTCTCTCCTCCTT 61.309 60.000 7.03 0.00 0.00 3.36
933 994 1.296392 CGCTCATCTTCCACCACCA 59.704 57.895 0.00 0.00 0.00 4.17
935 996 0.326264 GCTCATCTTCCACCACCACT 59.674 55.000 0.00 0.00 0.00 4.00
947 1008 2.366916 CACCACCACTGTCTCTTCTCTT 59.633 50.000 0.00 0.00 0.00 2.85
966 1027 0.465460 TGTTCCTTGCACGCCTCTTT 60.465 50.000 0.00 0.00 0.00 2.52
968 1029 1.172180 TTCCTTGCACGCCTCTTTGG 61.172 55.000 0.00 0.00 39.35 3.28
969 1030 1.898574 CCTTGCACGCCTCTTTGGT 60.899 57.895 0.00 0.00 38.35 3.67
979 1040 2.357034 TCTTTGGTCTCCGTGCGC 60.357 61.111 0.00 0.00 0.00 6.09
985 1046 2.429571 GTCTCCGTGCGCGTGTTA 60.430 61.111 19.61 0.00 36.15 2.41
986 1047 2.126618 TCTCCGTGCGCGTGTTAG 60.127 61.111 19.61 10.19 36.15 2.34
987 1048 3.179265 CTCCGTGCGCGTGTTAGG 61.179 66.667 19.61 4.90 36.15 2.69
1213 1289 3.876274 TTCTCGGGACTCTCAATTCTG 57.124 47.619 0.00 0.00 0.00 3.02
1214 1290 2.808919 TCTCGGGACTCTCAATTCTGT 58.191 47.619 0.00 0.00 0.00 3.41
1215 1291 2.755655 TCTCGGGACTCTCAATTCTGTC 59.244 50.000 0.00 0.00 0.00 3.51
1216 1292 2.493675 CTCGGGACTCTCAATTCTGTCA 59.506 50.000 0.00 0.00 0.00 3.58
1217 1293 2.231478 TCGGGACTCTCAATTCTGTCAC 59.769 50.000 0.00 0.00 0.00 3.67
1219 1295 3.444034 CGGGACTCTCAATTCTGTCACTA 59.556 47.826 0.00 0.00 31.30 2.74
1220 1296 4.675671 CGGGACTCTCAATTCTGTCACTAC 60.676 50.000 0.00 0.00 31.30 2.73
1222 1298 4.464597 GGACTCTCAATTCTGTCACTACCT 59.535 45.833 0.00 0.00 0.00 3.08
1223 1299 5.393678 GGACTCTCAATTCTGTCACTACCTC 60.394 48.000 0.00 0.00 0.00 3.85
1224 1300 4.156922 ACTCTCAATTCTGTCACTACCTCG 59.843 45.833 0.00 0.00 0.00 4.63
1225 1301 4.079970 TCTCAATTCTGTCACTACCTCGT 58.920 43.478 0.00 0.00 0.00 4.18
1226 1302 4.156190 TCTCAATTCTGTCACTACCTCGTC 59.844 45.833 0.00 0.00 0.00 4.20
1227 1303 4.079970 TCAATTCTGTCACTACCTCGTCT 58.920 43.478 0.00 0.00 0.00 4.18
1230 1306 3.420300 TCTGTCACTACCTCGTCTTCT 57.580 47.619 0.00 0.00 0.00 2.85
1290 1366 0.609662 GTAACTAACCGACTGGGCCA 59.390 55.000 5.85 5.85 40.62 5.36
1291 1367 1.208776 GTAACTAACCGACTGGGCCAT 59.791 52.381 6.72 0.00 40.62 4.40
1292 1368 0.252197 AACTAACCGACTGGGCCATC 59.748 55.000 6.72 6.28 40.62 3.51
1293 1369 1.146263 CTAACCGACTGGGCCATCC 59.854 63.158 6.72 0.12 40.62 3.51
1294 1370 1.613928 TAACCGACTGGGCCATCCA 60.614 57.895 6.72 0.00 44.79 3.41
1378 1454 2.617274 GCAGAAGGTCAACACGCCC 61.617 63.158 0.00 0.00 0.00 6.13
1451 1527 5.680408 GCCAAAATTAACCTCCCCGTTAATC 60.680 44.000 7.07 0.00 44.38 1.75
1479 1555 4.135153 CTCCGGGCTCACTCACCG 62.135 72.222 0.00 0.00 46.79 4.94
1494 1570 2.033602 CCGGGCCGTTTCCTCTTT 59.966 61.111 26.32 0.00 0.00 2.52
1596 1682 0.820871 AAAGGCTTTTCGTGTTGGCA 59.179 45.000 6.68 0.00 0.00 4.92
1661 1758 1.758514 GCGAGGAGGAGGACCATCA 60.759 63.158 0.00 0.00 38.94 3.07
1743 1840 2.101770 GCCCGTAAGTCGACCGAG 59.898 66.667 13.01 0.44 42.86 4.63
1876 1977 1.399727 CGTTGAATGTTCCTTCCGTGC 60.400 52.381 0.00 0.00 0.00 5.34
1919 2027 3.871463 GCTGAGATGAGATGGTTGGTTGT 60.871 47.826 0.00 0.00 0.00 3.32
1920 2028 3.678289 TGAGATGAGATGGTTGGTTGTG 58.322 45.455 0.00 0.00 0.00 3.33
1921 2029 3.072915 TGAGATGAGATGGTTGGTTGTGT 59.927 43.478 0.00 0.00 0.00 3.72
1922 2030 4.074970 GAGATGAGATGGTTGGTTGTGTT 58.925 43.478 0.00 0.00 0.00 3.32
1946 2054 1.192803 GGTGGGGAGAGGAAAGACGT 61.193 60.000 0.00 0.00 0.00 4.34
1958 2066 0.905337 AAAGACGTGGAGGAGGAGGG 60.905 60.000 0.00 0.00 0.00 4.30
2059 2169 1.891150 AGAATGCCAAGCAAGAAGGTG 59.109 47.619 0.00 0.00 43.62 4.00
2060 2170 1.615392 GAATGCCAAGCAAGAAGGTGT 59.385 47.619 0.00 0.00 43.62 4.16
2061 2171 2.584835 ATGCCAAGCAAGAAGGTGTA 57.415 45.000 0.00 0.00 43.62 2.90
2062 2172 1.896220 TGCCAAGCAAGAAGGTGTAG 58.104 50.000 0.00 0.00 34.76 2.74
2063 2173 1.142870 TGCCAAGCAAGAAGGTGTAGT 59.857 47.619 0.00 0.00 34.76 2.73
2082 2192 4.216411 AGTACCACCTGCATTTATTCGT 57.784 40.909 0.00 0.00 0.00 3.85
2156 2279 4.382685 GGTTATTCAGTCAGTCAATCCCGA 60.383 45.833 0.00 0.00 0.00 5.14
2166 2292 2.907042 AGTCAATCCCGATCTATTCCCC 59.093 50.000 0.00 0.00 0.00 4.81
2222 2352 5.882557 TCCATTAAGAACTTGATTCCTCTGC 59.117 40.000 0.00 0.00 38.16 4.26
2242 2372 2.096013 GCTTCTAATGGCAGAACCGAAC 59.904 50.000 0.00 0.00 43.94 3.95
2245 2375 1.737793 CTAATGGCAGAACCGAACCAC 59.262 52.381 0.00 0.00 43.94 4.16
2248 2378 0.981183 TGGCAGAACCGAACCACTAT 59.019 50.000 0.00 0.00 43.94 2.12
2305 2436 8.503458 GTACTTATGGTACTGTCAGAGTAGAA 57.497 38.462 6.91 0.00 45.25 2.10
2306 2437 7.393841 ACTTATGGTACTGTCAGAGTAGAAC 57.606 40.000 6.91 0.00 37.87 3.01
2307 2438 7.176490 ACTTATGGTACTGTCAGAGTAGAACT 58.824 38.462 6.91 0.00 37.87 3.01
2308 2439 5.906113 ATGGTACTGTCAGAGTAGAACTG 57.094 43.478 6.91 0.00 37.87 3.16
2309 2440 4.981812 TGGTACTGTCAGAGTAGAACTGA 58.018 43.478 6.91 0.00 37.87 3.41
2310 2441 5.382616 TGGTACTGTCAGAGTAGAACTGAA 58.617 41.667 6.91 0.00 44.29 3.02
2311 2442 5.473846 TGGTACTGTCAGAGTAGAACTGAAG 59.526 44.000 6.91 0.00 44.29 3.02
2312 2443 5.106078 GGTACTGTCAGAGTAGAACTGAAGG 60.106 48.000 6.91 0.00 44.29 3.46
2313 2444 4.475345 ACTGTCAGAGTAGAACTGAAGGT 58.525 43.478 6.91 0.00 44.29 3.50
2633 2764 4.962693 GCACAAGCTAGAACAATGTAGTG 58.037 43.478 0.00 0.00 37.91 2.74
2634 2765 4.452455 GCACAAGCTAGAACAATGTAGTGT 59.548 41.667 0.00 0.00 37.91 3.55
2635 2766 5.637810 GCACAAGCTAGAACAATGTAGTGTA 59.362 40.000 0.00 0.00 37.91 2.90
2659 2792 6.558909 AGTCCTTAGTTTAATCCGAGTTACG 58.441 40.000 0.00 0.00 42.18 3.18
2660 2793 6.151817 AGTCCTTAGTTTAATCCGAGTTACGT 59.848 38.462 0.00 0.00 40.78 3.57
2670 2911 3.002791 TCCGAGTTACGTAGTACCAGTG 58.997 50.000 0.00 0.00 45.76 3.66
2674 2915 3.753272 GAGTTACGTAGTACCAGTGGTGA 59.247 47.826 25.64 7.18 45.76 4.02
2773 3039 1.080995 GCATCACGTGTCAGAGCTCC 61.081 60.000 16.51 0.00 0.00 4.70
2835 3111 0.904649 CCCCAGTGATGCTCTGTACA 59.095 55.000 0.00 0.00 0.00 2.90
2878 3154 3.995199 TGCATCACGCCCAATTTTTAAA 58.005 36.364 0.00 0.00 41.33 1.52
2955 3231 4.681421 CTCGAGCTTGAGCACCAA 57.319 55.556 18.10 0.00 45.16 3.67
3364 3664 4.681978 GCGCTCTGGTGGACCGTT 62.682 66.667 0.00 0.00 39.43 4.44
3544 3844 1.154225 CTTCAACCGGTTCATGCGC 60.154 57.895 19.24 0.00 0.00 6.09
3766 4066 0.822944 TGGTGAACTCGGTGGACGTA 60.823 55.000 0.00 0.00 44.69 3.57
4118 4418 4.553330 ATCGACAACCTCAACCAGTAAT 57.447 40.909 0.00 0.00 0.00 1.89
4278 4603 1.865788 GCCGCTGCAAAGATGGAACA 61.866 55.000 0.00 0.00 39.77 3.18
4314 4640 3.721575 TGATATAGGCCCCTCACATTGTT 59.278 43.478 0.00 0.00 0.00 2.83
4508 4847 2.228822 CCACATGGTTTGTTGGCTAGAC 59.771 50.000 0.00 0.00 36.00 2.59
4585 4924 3.001026 CGCTGAGCATGTGATTGAGTAAG 59.999 47.826 4.88 0.00 0.00 2.34
4616 4955 2.414481 GAGCATGTGAGTGTGTAAGCTG 59.586 50.000 0.00 0.00 0.00 4.24
4629 4968 5.119125 GTGTGTAAGCTGGATCAAATTTTGC 59.881 40.000 4.19 0.00 0.00 3.68
4632 4971 3.498927 AGCTGGATCAAATTTTGCTCG 57.501 42.857 4.19 0.00 0.00 5.03
4690 5029 4.335416 AGACCGAAATGACCAATGATGTT 58.665 39.130 0.00 0.00 0.00 2.71
4691 5030 4.766891 AGACCGAAATGACCAATGATGTTT 59.233 37.500 0.00 0.00 0.00 2.83
4725 5064 9.695526 TTTTTGAGAACTAAATGACCAATGATG 57.304 29.630 0.00 0.00 0.00 3.07
4726 5065 8.408043 TTTGAGAACTAAATGACCAATGATGT 57.592 30.769 0.00 0.00 0.00 3.06
4727 5066 7.381766 TGAGAACTAAATGACCAATGATGTG 57.618 36.000 0.00 0.00 0.00 3.21
4728 5067 6.375174 TGAGAACTAAATGACCAATGATGTGG 59.625 38.462 0.00 0.00 44.92 4.17
4774 5113 1.000233 TGCCCAGGCCGATGAATTT 60.000 52.632 6.14 0.00 41.09 1.82
4775 5114 0.614415 TGCCCAGGCCGATGAATTTT 60.614 50.000 6.14 0.00 41.09 1.82
4777 5116 0.461135 CCCAGGCCGATGAATTTTGG 59.539 55.000 0.00 0.00 0.00 3.28
4778 5117 1.473258 CCAGGCCGATGAATTTTGGA 58.527 50.000 0.00 0.00 0.00 3.53
4821 5160 0.249447 TAAGCATCGCTCATGGGTCG 60.249 55.000 0.00 0.00 38.25 4.79
4825 5164 2.797278 ATCGCTCATGGGTCGGTCC 61.797 63.158 9.09 0.00 0.00 4.46
4830 5169 1.884075 CTCATGGGTCGGTCCAACGA 61.884 60.000 0.00 0.00 40.62 3.85
4838 5177 1.463444 GTCGGTCCAACGAAATTCCTG 59.537 52.381 0.00 0.00 45.38 3.86
4854 5195 1.164411 CCTGCTTAACATTCACCGCA 58.836 50.000 0.00 0.00 0.00 5.69
4869 5210 0.238289 CCGCATCAAACACCACTGTC 59.762 55.000 0.00 0.00 0.00 3.51
4876 5217 3.157881 TCAAACACCACTGTCAACCAAA 58.842 40.909 0.00 0.00 0.00 3.28
4877 5218 3.574396 TCAAACACCACTGTCAACCAAAA 59.426 39.130 0.00 0.00 0.00 2.44
4878 5219 4.221703 TCAAACACCACTGTCAACCAAAAT 59.778 37.500 0.00 0.00 0.00 1.82
4880 5221 4.122143 ACACCACTGTCAACCAAAATTG 57.878 40.909 0.00 0.00 0.00 2.32
4881 5222 3.513515 ACACCACTGTCAACCAAAATTGT 59.486 39.130 0.00 0.00 0.00 2.71
4882 5223 4.707448 ACACCACTGTCAACCAAAATTGTA 59.293 37.500 0.00 0.00 0.00 2.41
4884 5225 6.127196 ACACCACTGTCAACCAAAATTGTAAT 60.127 34.615 0.00 0.00 0.00 1.89
4885 5226 6.760770 CACCACTGTCAACCAAAATTGTAATT 59.239 34.615 0.00 0.00 0.00 1.40
4886 5227 7.279758 CACCACTGTCAACCAAAATTGTAATTT 59.720 33.333 0.00 0.00 40.15 1.82
4890 5231 9.320352 ACTGTCAACCAAAATTGTAATTTAACC 57.680 29.630 3.25 0.00 37.62 2.85
4911 5264 7.860649 AACCATTATTGATAGCATTGGGAAT 57.139 32.000 5.22 0.00 0.00 3.01
4927 5280 7.524698 GCATTGGGAATTAGGTTTGTGACTTTA 60.525 37.037 0.00 0.00 0.00 1.85
4930 5283 8.307582 TGGGAATTAGGTTTGTGACTTTAAAA 57.692 30.769 0.00 0.00 0.00 1.52
4952 5306 5.710613 AAATGTTCACGCGTTTCAAAAAT 57.289 30.435 10.22 0.00 0.00 1.82
4956 5310 5.274718 TGTTCACGCGTTTCAAAAATATGT 58.725 33.333 10.22 0.00 0.00 2.29
4958 5312 6.910972 TGTTCACGCGTTTCAAAAATATGTAA 59.089 30.769 10.22 0.00 0.00 2.41
5038 5394 9.072294 CAAAATATTTCTTCGTACCATCCAAAC 57.928 33.333 0.10 0.00 0.00 2.93
5049 5405 5.124776 CGTACCATCCAAACCAAATGTATGT 59.875 40.000 0.00 0.00 0.00 2.29
5053 5409 4.119556 TCCAAACCAAATGTATGTCCCA 57.880 40.909 0.00 0.00 0.00 4.37
5054 5410 3.829601 TCCAAACCAAATGTATGTCCCAC 59.170 43.478 0.00 0.00 0.00 4.61
5056 5412 4.321899 CCAAACCAAATGTATGTCCCACTG 60.322 45.833 0.00 0.00 0.00 3.66
5082 5438 6.601741 AAAATGTTCACGCATGTCAAAAAT 57.398 29.167 0.00 0.00 0.00 1.82
5087 5443 6.212235 TGTTCACGCATGTCAAAAATATGTT 58.788 32.000 0.00 0.00 0.00 2.71
5099 5455 9.064706 TGTCAAAAATATGTTCATGCCATTTTT 57.935 25.926 9.67 9.67 38.61 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.375014 ACTTAACAACCACCAAGGGG 57.625 50.000 0.00 0.00 43.89 4.79
7 8 3.449377 ACAAACTTAACAACCACCAAGGG 59.551 43.478 0.00 0.00 43.89 3.95
8 9 4.081917 ACACAAACTTAACAACCACCAAGG 60.082 41.667 0.00 0.00 45.67 3.61
9 10 5.066968 ACACAAACTTAACAACCACCAAG 57.933 39.130 0.00 0.00 0.00 3.61
10 11 5.470047 AACACAAACTTAACAACCACCAA 57.530 34.783 0.00 0.00 0.00 3.67
11 12 5.221461 ACAAACACAAACTTAACAACCACCA 60.221 36.000 0.00 0.00 0.00 4.17
12 13 5.231702 ACAAACACAAACTTAACAACCACC 58.768 37.500 0.00 0.00 0.00 4.61
13 14 5.346551 GGACAAACACAAACTTAACAACCAC 59.653 40.000 0.00 0.00 0.00 4.16
14 15 5.010719 TGGACAAACACAAACTTAACAACCA 59.989 36.000 0.00 0.00 0.00 3.67
15 16 5.471257 TGGACAAACACAAACTTAACAACC 58.529 37.500 0.00 0.00 0.00 3.77
16 17 6.090223 CCTTGGACAAACACAAACTTAACAAC 59.910 38.462 0.00 0.00 0.00 3.32
17 18 6.159988 CCTTGGACAAACACAAACTTAACAA 58.840 36.000 0.00 0.00 0.00 2.83
18 19 5.715070 CCTTGGACAAACACAAACTTAACA 58.285 37.500 0.00 0.00 0.00 2.41
19 20 4.565166 GCCTTGGACAAACACAAACTTAAC 59.435 41.667 0.00 0.00 0.00 2.01
20 21 4.675671 CGCCTTGGACAAACACAAACTTAA 60.676 41.667 0.00 0.00 0.00 1.85
21 22 3.181495 CGCCTTGGACAAACACAAACTTA 60.181 43.478 0.00 0.00 0.00 2.24
22 23 2.416701 CGCCTTGGACAAACACAAACTT 60.417 45.455 0.00 0.00 0.00 2.66
23 24 1.134175 CGCCTTGGACAAACACAAACT 59.866 47.619 0.00 0.00 0.00 2.66
24 25 1.133407 TCGCCTTGGACAAACACAAAC 59.867 47.619 0.00 0.00 0.00 2.93
25 26 1.464734 TCGCCTTGGACAAACACAAA 58.535 45.000 0.00 0.00 0.00 2.83
26 27 1.403679 CTTCGCCTTGGACAAACACAA 59.596 47.619 0.00 0.00 0.00 3.33
27 28 1.021202 CTTCGCCTTGGACAAACACA 58.979 50.000 0.00 0.00 0.00 3.72
28 29 1.002792 GACTTCGCCTTGGACAAACAC 60.003 52.381 0.00 0.00 0.00 3.32
29 30 1.305201 GACTTCGCCTTGGACAAACA 58.695 50.000 0.00 0.00 0.00 2.83
30 31 0.234884 CGACTTCGCCTTGGACAAAC 59.765 55.000 0.00 0.00 0.00 2.93
31 32 0.105224 TCGACTTCGCCTTGGACAAA 59.895 50.000 0.00 0.00 39.60 2.83
32 33 0.105224 TTCGACTTCGCCTTGGACAA 59.895 50.000 0.00 0.00 39.60 3.18
33 34 0.319555 CTTCGACTTCGCCTTGGACA 60.320 55.000 0.00 0.00 39.60 4.02
34 35 0.319641 ACTTCGACTTCGCCTTGGAC 60.320 55.000 0.00 0.00 39.60 4.02
35 36 1.250328 TACTTCGACTTCGCCTTGGA 58.750 50.000 0.00 0.00 39.60 3.53
36 37 1.927174 CATACTTCGACTTCGCCTTGG 59.073 52.381 0.00 0.00 39.60 3.61
37 38 1.927174 CCATACTTCGACTTCGCCTTG 59.073 52.381 0.00 0.00 39.60 3.61
38 39 1.822990 TCCATACTTCGACTTCGCCTT 59.177 47.619 0.00 0.00 39.60 4.35
39 40 1.405821 CTCCATACTTCGACTTCGCCT 59.594 52.381 0.00 0.00 39.60 5.52
40 41 1.536284 CCTCCATACTTCGACTTCGCC 60.536 57.143 0.00 0.00 39.60 5.54
41 42 1.404391 TCCTCCATACTTCGACTTCGC 59.596 52.381 0.00 0.00 39.60 4.70
42 43 3.633235 CATCCTCCATACTTCGACTTCG 58.367 50.000 0.00 0.00 41.45 3.79
43 44 3.385577 GCATCCTCCATACTTCGACTTC 58.614 50.000 0.00 0.00 0.00 3.01
44 45 2.103263 GGCATCCTCCATACTTCGACTT 59.897 50.000 0.00 0.00 0.00 3.01
45 46 1.689273 GGCATCCTCCATACTTCGACT 59.311 52.381 0.00 0.00 0.00 4.18
46 47 1.689273 AGGCATCCTCCATACTTCGAC 59.311 52.381 0.00 0.00 0.00 4.20
47 48 2.088104 AGGCATCCTCCATACTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
48 49 2.232452 CCTAGGCATCCTCCATACTTCG 59.768 54.545 0.00 0.00 34.61 3.79
49 50 3.511477 TCCTAGGCATCCTCCATACTTC 58.489 50.000 2.96 0.00 34.61 3.01
50 51 3.637821 TCCTAGGCATCCTCCATACTT 57.362 47.619 2.96 0.00 34.61 2.24
51 52 3.181402 ACATCCTAGGCATCCTCCATACT 60.181 47.826 2.96 0.00 34.61 2.12
52 53 3.177228 ACATCCTAGGCATCCTCCATAC 58.823 50.000 2.96 0.00 34.61 2.39
53 54 3.445008 GACATCCTAGGCATCCTCCATA 58.555 50.000 2.96 0.00 34.61 2.74
54 55 2.264455 GACATCCTAGGCATCCTCCAT 58.736 52.381 2.96 0.00 34.61 3.41
55 56 1.722034 GACATCCTAGGCATCCTCCA 58.278 55.000 2.96 0.00 34.61 3.86
56 57 0.980423 GGACATCCTAGGCATCCTCC 59.020 60.000 15.17 6.75 34.61 4.30
57 58 2.022718 AGGACATCCTAGGCATCCTC 57.977 55.000 18.02 3.69 46.48 3.71
79 80 3.864686 CGGATCAACGGCGCCAAG 61.865 66.667 28.98 14.14 0.00 3.61
87 88 0.941542 AACACACAACCGGATCAACG 59.058 50.000 9.46 0.00 0.00 4.10
88 89 1.001815 CCAACACACAACCGGATCAAC 60.002 52.381 9.46 0.00 0.00 3.18
89 90 1.313772 CCAACACACAACCGGATCAA 58.686 50.000 9.46 0.00 0.00 2.57
90 91 0.181587 ACCAACACACAACCGGATCA 59.818 50.000 9.46 0.00 0.00 2.92
91 92 1.001815 CAACCAACACACAACCGGATC 60.002 52.381 9.46 0.00 0.00 3.36
92 93 1.028905 CAACCAACACACAACCGGAT 58.971 50.000 9.46 0.00 0.00 4.18
93 94 0.322636 ACAACCAACACACAACCGGA 60.323 50.000 9.46 0.00 0.00 5.14
94 95 0.179150 CACAACCAACACACAACCGG 60.179 55.000 0.00 0.00 0.00 5.28
95 96 0.523966 ACACAACCAACACACAACCG 59.476 50.000 0.00 0.00 0.00 4.44
96 97 1.466697 CGACACAACCAACACACAACC 60.467 52.381 0.00 0.00 0.00 3.77
97 98 1.198178 ACGACACAACCAACACACAAC 59.802 47.619 0.00 0.00 0.00 3.32
98 99 1.197949 CACGACACAACCAACACACAA 59.802 47.619 0.00 0.00 0.00 3.33
99 100 0.799393 CACGACACAACCAACACACA 59.201 50.000 0.00 0.00 0.00 3.72
100 101 0.522495 GCACGACACAACCAACACAC 60.522 55.000 0.00 0.00 0.00 3.82
101 102 1.797441 GCACGACACAACCAACACA 59.203 52.632 0.00 0.00 0.00 3.72
102 103 1.297304 CGCACGACACAACCAACAC 60.297 57.895 0.00 0.00 0.00 3.32
103 104 2.465299 CCGCACGACACAACCAACA 61.465 57.895 0.00 0.00 0.00 3.33
104 105 2.326550 CCGCACGACACAACCAAC 59.673 61.111 0.00 0.00 0.00 3.77
105 106 2.897846 CCCGCACGACACAACCAA 60.898 61.111 0.00 0.00 0.00 3.67
106 107 4.920112 CCCCGCACGACACAACCA 62.920 66.667 0.00 0.00 0.00 3.67
107 108 4.922026 ACCCCGCACGACACAACC 62.922 66.667 0.00 0.00 0.00 3.77
108 109 3.645975 CACCCCGCACGACACAAC 61.646 66.667 0.00 0.00 0.00 3.32
116 117 4.643387 ACAAGAGGCACCCCGCAC 62.643 66.667 0.00 0.00 45.17 5.34
117 118 4.641645 CACAAGAGGCACCCCGCA 62.642 66.667 0.00 0.00 45.17 5.69
119 120 4.722700 CCCACAAGAGGCACCCCG 62.723 72.222 0.00 0.00 35.76 5.73
120 121 4.366684 CCCCACAAGAGGCACCCC 62.367 72.222 0.00 0.00 0.00 4.95
121 122 2.656698 AAACCCCACAAGAGGCACCC 62.657 60.000 0.00 0.00 0.00 4.61
122 123 1.152546 AAACCCCACAAGAGGCACC 60.153 57.895 0.00 0.00 0.00 5.01
123 124 0.755327 ACAAACCCCACAAGAGGCAC 60.755 55.000 0.00 0.00 0.00 5.01
124 125 0.847373 TACAAACCCCACAAGAGGCA 59.153 50.000 0.00 0.00 0.00 4.75
125 126 1.989706 TTACAAACCCCACAAGAGGC 58.010 50.000 0.00 0.00 0.00 4.70
126 127 4.034285 AGATTACAAACCCCACAAGAGG 57.966 45.455 0.00 0.00 0.00 3.69
127 128 5.186198 CCTAGATTACAAACCCCACAAGAG 58.814 45.833 0.00 0.00 0.00 2.85
128 129 4.600111 ACCTAGATTACAAACCCCACAAGA 59.400 41.667 0.00 0.00 0.00 3.02
129 130 4.918588 ACCTAGATTACAAACCCCACAAG 58.081 43.478 0.00 0.00 0.00 3.16
130 131 5.073965 AGAACCTAGATTACAAACCCCACAA 59.926 40.000 0.00 0.00 0.00 3.33
131 132 4.600111 AGAACCTAGATTACAAACCCCACA 59.400 41.667 0.00 0.00 0.00 4.17
132 133 5.175388 AGAACCTAGATTACAAACCCCAC 57.825 43.478 0.00 0.00 0.00 4.61
133 134 4.081309 CGAGAACCTAGATTACAAACCCCA 60.081 45.833 0.00 0.00 0.00 4.96
134 135 4.081254 ACGAGAACCTAGATTACAAACCCC 60.081 45.833 0.00 0.00 0.00 4.95
135 136 5.082251 ACGAGAACCTAGATTACAAACCC 57.918 43.478 0.00 0.00 0.00 4.11
136 137 6.161381 TGAACGAGAACCTAGATTACAAACC 58.839 40.000 0.00 0.00 0.00 3.27
137 138 6.867293 ACTGAACGAGAACCTAGATTACAAAC 59.133 38.462 0.00 0.00 0.00 2.93
138 139 6.989659 ACTGAACGAGAACCTAGATTACAAA 58.010 36.000 0.00 0.00 0.00 2.83
139 140 6.585695 ACTGAACGAGAACCTAGATTACAA 57.414 37.500 0.00 0.00 0.00 2.41
140 141 6.883217 AGTACTGAACGAGAACCTAGATTACA 59.117 38.462 0.00 0.00 0.00 2.41
141 142 7.319142 AGTACTGAACGAGAACCTAGATTAC 57.681 40.000 0.00 0.00 0.00 1.89
142 143 7.609146 TCAAGTACTGAACGAGAACCTAGATTA 59.391 37.037 0.00 0.00 0.00 1.75
143 144 6.433404 TCAAGTACTGAACGAGAACCTAGATT 59.567 38.462 0.00 0.00 0.00 2.40
144 145 5.944599 TCAAGTACTGAACGAGAACCTAGAT 59.055 40.000 0.00 0.00 0.00 1.98
145 146 5.311265 TCAAGTACTGAACGAGAACCTAGA 58.689 41.667 0.00 0.00 0.00 2.43
146 147 5.624344 TCAAGTACTGAACGAGAACCTAG 57.376 43.478 0.00 0.00 0.00 3.02
147 148 4.082895 GCTCAAGTACTGAACGAGAACCTA 60.083 45.833 13.27 0.00 32.17 3.08
148 149 3.305471 GCTCAAGTACTGAACGAGAACCT 60.305 47.826 13.27 0.00 32.17 3.50
149 150 2.987821 GCTCAAGTACTGAACGAGAACC 59.012 50.000 13.27 0.00 32.17 3.62
150 151 3.670991 CAGCTCAAGTACTGAACGAGAAC 59.329 47.826 13.27 1.08 35.90 3.01
151 152 3.318275 ACAGCTCAAGTACTGAACGAGAA 59.682 43.478 13.27 0.00 37.35 2.87
152 153 2.885266 ACAGCTCAAGTACTGAACGAGA 59.115 45.455 13.27 0.00 37.35 4.04
153 154 3.238441 GACAGCTCAAGTACTGAACGAG 58.762 50.000 0.00 1.88 37.35 4.18
154 155 2.621526 TGACAGCTCAAGTACTGAACGA 59.378 45.455 0.00 0.00 37.35 3.85
155 156 3.013276 TGACAGCTCAAGTACTGAACG 57.987 47.619 0.00 0.00 37.35 3.95
156 157 4.372656 AGTTGACAGCTCAAGTACTGAAC 58.627 43.478 0.00 0.00 38.15 3.18
157 158 4.672587 AGTTGACAGCTCAAGTACTGAA 57.327 40.909 0.00 0.00 38.15 3.02
158 159 4.371786 CAAGTTGACAGCTCAAGTACTGA 58.628 43.478 0.00 0.00 38.86 3.41
159 160 3.059325 GCAAGTTGACAGCTCAAGTACTG 60.059 47.826 7.16 0.00 38.86 2.74
160 161 3.134458 GCAAGTTGACAGCTCAAGTACT 58.866 45.455 7.16 0.00 38.86 2.73
161 162 3.134458 AGCAAGTTGACAGCTCAAGTAC 58.866 45.455 7.16 0.00 38.86 2.73
162 163 3.475566 AGCAAGTTGACAGCTCAAGTA 57.524 42.857 7.16 0.00 38.86 2.24
163 164 2.338577 AGCAAGTTGACAGCTCAAGT 57.661 45.000 7.16 0.00 41.15 3.16
168 169 1.133976 ACAAGGAGCAAGTTGACAGCT 60.134 47.619 7.16 0.00 42.17 4.24
169 170 1.265365 GACAAGGAGCAAGTTGACAGC 59.735 52.381 7.16 0.00 0.00 4.40
170 171 2.564771 TGACAAGGAGCAAGTTGACAG 58.435 47.619 7.16 0.00 0.00 3.51
171 172 2.708216 TGACAAGGAGCAAGTTGACA 57.292 45.000 7.16 0.00 0.00 3.58
180 181 6.470235 CGTTTTCATCATAATTGACAAGGAGC 59.530 38.462 0.00 0.00 33.85 4.70
181 182 7.751732 TCGTTTTCATCATAATTGACAAGGAG 58.248 34.615 0.00 0.00 33.85 3.69
198 199 7.857569 ACGAGACAAAAGATTTATCGTTTTCA 58.142 30.769 0.00 0.00 38.65 2.69
218 219 6.552859 TGTGCATTTTCATTCTAAACGAGA 57.447 33.333 0.00 0.00 0.00 4.04
227 228 2.679450 TGCTGCTGTGCATTTTCATTC 58.321 42.857 0.00 0.00 38.13 2.67
229 230 2.683968 CTTGCTGCTGTGCATTTTCAT 58.316 42.857 0.00 0.00 42.96 2.57
235 236 2.599281 TGGCTTGCTGCTGTGCAT 60.599 55.556 0.00 0.00 42.96 3.96
236 237 3.292159 CTGGCTTGCTGCTGTGCA 61.292 61.111 0.00 0.00 42.39 4.57
237 238 4.719369 GCTGGCTTGCTGCTGTGC 62.719 66.667 0.00 2.40 42.39 4.57
238 239 2.852180 TTGCTGGCTTGCTGCTGTG 61.852 57.895 0.00 0.00 42.39 3.66
239 240 2.520020 TTGCTGGCTTGCTGCTGT 60.520 55.556 0.00 0.00 42.39 4.40
240 241 2.049433 GTTGCTGGCTTGCTGCTG 60.049 61.111 0.00 0.00 42.39 4.41
242 243 3.154584 TTGGTTGCTGGCTTGCTGC 62.155 57.895 0.00 0.00 41.94 5.25
243 244 1.006571 CTTGGTTGCTGGCTTGCTG 60.007 57.895 4.89 0.00 0.00 4.41
244 245 2.205152 CCTTGGTTGCTGGCTTGCT 61.205 57.895 4.89 0.00 0.00 3.91
245 246 2.031674 AACCTTGGTTGCTGGCTTGC 62.032 55.000 4.00 0.00 0.00 4.01
246 247 0.465287 AAACCTTGGTTGCTGGCTTG 59.535 50.000 5.74 0.00 0.00 4.01
247 248 0.752658 GAAACCTTGGTTGCTGGCTT 59.247 50.000 5.74 0.00 0.00 4.35
248 249 1.115326 GGAAACCTTGGTTGCTGGCT 61.115 55.000 10.10 0.00 0.00 4.75
249 250 1.367471 GGAAACCTTGGTTGCTGGC 59.633 57.895 10.10 0.00 0.00 4.85
250 251 0.821711 TCGGAAACCTTGGTTGCTGG 60.822 55.000 16.95 7.41 0.00 4.85
258 259 2.359900 CATCTCCCTTCGGAAACCTTG 58.640 52.381 0.00 0.00 37.86 3.61
261 262 0.748367 GGCATCTCCCTTCGGAAACC 60.748 60.000 0.00 0.00 37.86 3.27
269 270 2.273449 CGGCTTGGCATCTCCCTT 59.727 61.111 0.00 0.00 0.00 3.95
271 272 4.883354 CCCGGCTTGGCATCTCCC 62.883 72.222 0.00 0.00 35.87 4.30
457 490 0.865769 GTGTGGTACCAGAAGTTGCG 59.134 55.000 16.93 0.00 0.00 4.85
458 491 0.865769 CGTGTGGTACCAGAAGTTGC 59.134 55.000 16.93 1.66 0.00 4.17
468 501 1.505353 CGAGGAGGACGTGTGGTAC 59.495 63.158 0.00 0.00 0.00 3.34
472 505 2.179517 GAGCGAGGAGGACGTGTG 59.820 66.667 0.00 0.00 0.00 3.82
475 508 2.041686 GTCAGAGCGAGGAGGACGT 61.042 63.158 0.00 0.00 0.00 4.34
717 762 2.357881 CCATCCCATCCCATCCATCATC 60.358 54.545 0.00 0.00 0.00 2.92
718 763 1.644337 CCATCCCATCCCATCCATCAT 59.356 52.381 0.00 0.00 0.00 2.45
719 764 1.078115 CCATCCCATCCCATCCATCA 58.922 55.000 0.00 0.00 0.00 3.07
720 765 0.324091 GCCATCCCATCCCATCCATC 60.324 60.000 0.00 0.00 0.00 3.51
721 766 1.778981 GCCATCCCATCCCATCCAT 59.221 57.895 0.00 0.00 0.00 3.41
722 767 2.832778 CGCCATCCCATCCCATCCA 61.833 63.158 0.00 0.00 0.00 3.41
723 768 2.034687 CGCCATCCCATCCCATCC 59.965 66.667 0.00 0.00 0.00 3.51
724 769 1.302832 GACGCCATCCCATCCCATC 60.303 63.158 0.00 0.00 0.00 3.51
725 770 2.839098 GACGCCATCCCATCCCAT 59.161 61.111 0.00 0.00 0.00 4.00
726 771 3.860605 CGACGCCATCCCATCCCA 61.861 66.667 0.00 0.00 0.00 4.37
727 772 1.541310 TATCGACGCCATCCCATCCC 61.541 60.000 0.00 0.00 0.00 3.85
728 773 0.320374 TTATCGACGCCATCCCATCC 59.680 55.000 0.00 0.00 0.00 3.51
729 774 1.000955 ACTTATCGACGCCATCCCATC 59.999 52.381 0.00 0.00 0.00 3.51
730 775 1.000955 GACTTATCGACGCCATCCCAT 59.999 52.381 0.00 0.00 0.00 4.00
731 776 0.387929 GACTTATCGACGCCATCCCA 59.612 55.000 0.00 0.00 0.00 4.37
732 777 3.196613 GACTTATCGACGCCATCCC 57.803 57.895 0.00 0.00 0.00 3.85
881 942 1.178276 GAAGAAGGAGGAGAGACGCA 58.822 55.000 0.00 0.00 0.00 5.24
896 957 0.684805 GGAGGCGGAGAAGGAGAAGA 60.685 60.000 0.00 0.00 0.00 2.87
933 994 4.742138 GCAAGGAACAAGAGAAGAGACAGT 60.742 45.833 0.00 0.00 0.00 3.55
935 996 3.134623 TGCAAGGAACAAGAGAAGAGACA 59.865 43.478 0.00 0.00 0.00 3.41
947 1008 0.465460 AAAGAGGCGTGCAAGGAACA 60.465 50.000 0.79 0.00 0.00 3.18
968 1029 2.429571 TAACACGCGCACGGAGAC 60.430 61.111 5.73 0.00 46.04 3.36
969 1030 2.126618 CTAACACGCGCACGGAGA 60.127 61.111 5.73 0.00 46.04 3.71
979 1040 2.158959 CGCTTCTCCGCCTAACACG 61.159 63.158 0.00 0.00 0.00 4.49
988 1049 0.871592 TTCATCATCGCGCTTCTCCG 60.872 55.000 5.56 0.00 0.00 4.63
989 1050 0.857935 CTTCATCATCGCGCTTCTCC 59.142 55.000 5.56 0.00 0.00 3.71
994 1055 2.963854 CGCCTTCATCATCGCGCT 60.964 61.111 5.56 0.00 37.97 5.92
1213 1289 4.456566 AGAAGAAGAAGACGAGGTAGTGAC 59.543 45.833 0.00 0.00 0.00 3.67
1214 1290 4.653868 AGAAGAAGAAGACGAGGTAGTGA 58.346 43.478 0.00 0.00 0.00 3.41
1215 1291 5.182380 AGAAGAAGAAGAAGACGAGGTAGTG 59.818 44.000 0.00 0.00 0.00 2.74
1216 1292 5.318630 AGAAGAAGAAGAAGACGAGGTAGT 58.681 41.667 0.00 0.00 0.00 2.73
1217 1293 5.890424 AGAAGAAGAAGAAGACGAGGTAG 57.110 43.478 0.00 0.00 0.00 3.18
1219 1295 4.830600 AGAAGAAGAAGAAGAAGACGAGGT 59.169 41.667 0.00 0.00 0.00 3.85
1220 1296 5.385509 AGAAGAAGAAGAAGAAGACGAGG 57.614 43.478 0.00 0.00 0.00 4.63
1222 1298 6.642707 AGAAGAAGAAGAAGAAGAAGACGA 57.357 37.500 0.00 0.00 0.00 4.20
1223 1299 6.920758 TCAAGAAGAAGAAGAAGAAGAAGACG 59.079 38.462 0.00 0.00 0.00 4.18
1224 1300 8.655651 TTCAAGAAGAAGAAGAAGAAGAAGAC 57.344 34.615 0.00 0.00 0.00 3.01
1290 1366 1.299468 GCGCGAGAAGACGATGGAT 60.299 57.895 12.10 0.00 35.09 3.41
1291 1367 2.102357 GCGCGAGAAGACGATGGA 59.898 61.111 12.10 0.00 35.09 3.41
1292 1368 2.202610 TGCGCGAGAAGACGATGG 60.203 61.111 12.10 0.00 35.09 3.51
1293 1369 1.515088 ACTGCGCGAGAAGACGATG 60.515 57.895 12.10 0.00 40.08 3.84
1294 1370 1.515088 CACTGCGCGAGAAGACGAT 60.515 57.895 12.10 0.00 40.08 3.73
1353 1429 1.338105 TGTTGACCTTCTGCTGGATCG 60.338 52.381 0.00 0.00 0.00 3.69
1378 1454 2.266055 GTGGAGGTCTTCTGGGCG 59.734 66.667 0.00 0.00 0.00 6.13
1403 1479 6.634436 GCTTTGATTGATTGATTACCGATGAC 59.366 38.462 0.00 0.00 0.00 3.06
1414 1490 8.156165 AGGTTAATTTTGGCTTTGATTGATTGA 58.844 29.630 0.00 0.00 0.00 2.57
1438 1514 0.465642 GGCAAGGATTAACGGGGAGG 60.466 60.000 0.00 0.00 0.00 4.30
1479 1555 1.166129 GAAGAAAGAGGAAACGGCCC 58.834 55.000 0.00 0.00 0.00 5.80
1596 1682 4.454504 CCGTGGCTTTAGTTTTAGTGTGAT 59.545 41.667 0.00 0.00 0.00 3.06
1734 1831 0.373024 CTAACGTCTCCTCGGTCGAC 59.627 60.000 7.13 7.13 34.94 4.20
1737 1834 1.939255 CTACCTAACGTCTCCTCGGTC 59.061 57.143 0.00 0.00 34.94 4.79
1739 1836 1.307097 CCTACCTAACGTCTCCTCGG 58.693 60.000 0.00 0.00 34.94 4.63
1743 1840 1.404748 GCTGACCTACCTAACGTCTCC 59.595 57.143 0.00 0.00 0.00 3.71
1846 1947 1.160137 ACATTCAACGCTTCAGCTCC 58.840 50.000 0.00 0.00 39.32 4.70
1919 2027 1.132657 TCCTCTCCCCACCTACAAACA 60.133 52.381 0.00 0.00 0.00 2.83
1920 2028 1.652947 TCCTCTCCCCACCTACAAAC 58.347 55.000 0.00 0.00 0.00 2.93
1921 2029 2.426431 TTCCTCTCCCCACCTACAAA 57.574 50.000 0.00 0.00 0.00 2.83
1922 2030 2.158066 TCTTTCCTCTCCCCACCTACAA 60.158 50.000 0.00 0.00 0.00 2.41
1946 2054 4.095400 GCTCCCCCTCCTCCTCCA 62.095 72.222 0.00 0.00 0.00 3.86
1958 2066 3.680920 TTCTCCTCCTCCCGCTCCC 62.681 68.421 0.00 0.00 0.00 4.30
2059 2169 5.114081 ACGAATAAATGCAGGTGGTACTAC 58.886 41.667 0.00 0.00 0.00 2.73
2060 2170 5.347620 ACGAATAAATGCAGGTGGTACTA 57.652 39.130 0.00 0.00 0.00 1.82
2061 2171 4.216411 ACGAATAAATGCAGGTGGTACT 57.784 40.909 0.00 0.00 0.00 2.73
2062 2172 4.155280 ACAACGAATAAATGCAGGTGGTAC 59.845 41.667 0.00 0.00 0.00 3.34
2063 2173 4.328536 ACAACGAATAAATGCAGGTGGTA 58.671 39.130 0.00 0.00 0.00 3.25
2156 2279 3.496870 GCAGATGGAAACGGGGAATAGAT 60.497 47.826 0.00 0.00 0.00 1.98
2166 2292 2.789092 GCGAAGATTGCAGATGGAAACG 60.789 50.000 0.00 0.00 0.00 3.60
2222 2352 2.678336 GGTTCGGTTCTGCCATTAGAAG 59.322 50.000 0.00 0.00 37.36 2.85
2283 2414 7.337184 TCAGTTCTACTCTGACAGTACCATAAG 59.663 40.741 1.59 0.00 37.07 1.73
2285 2416 6.718294 TCAGTTCTACTCTGACAGTACCATA 58.282 40.000 1.59 0.00 37.07 2.74
2286 2417 5.571285 TCAGTTCTACTCTGACAGTACCAT 58.429 41.667 1.59 0.00 37.07 3.55
2556 2687 5.179368 CAGTTCTACTCTTCATCCGCAAAAA 59.821 40.000 0.00 0.00 0.00 1.94
2557 2688 4.690748 CAGTTCTACTCTTCATCCGCAAAA 59.309 41.667 0.00 0.00 0.00 2.44
2558 2689 4.021456 TCAGTTCTACTCTTCATCCGCAAA 60.021 41.667 0.00 0.00 0.00 3.68
2559 2690 3.509967 TCAGTTCTACTCTTCATCCGCAA 59.490 43.478 0.00 0.00 0.00 4.85
2560 2691 3.089284 TCAGTTCTACTCTTCATCCGCA 58.911 45.455 0.00 0.00 0.00 5.69
2561 2692 3.784701 TCAGTTCTACTCTTCATCCGC 57.215 47.619 0.00 0.00 0.00 5.54
2562 2693 5.098893 CACTTCAGTTCTACTCTTCATCCG 58.901 45.833 0.00 0.00 0.00 4.18
2563 2694 6.031751 ACACTTCAGTTCTACTCTTCATCC 57.968 41.667 0.00 0.00 0.00 3.51
2564 2695 7.148641 TCAACACTTCAGTTCTACTCTTCATC 58.851 38.462 0.00 0.00 0.00 2.92
2565 2696 7.055667 TCAACACTTCAGTTCTACTCTTCAT 57.944 36.000 0.00 0.00 0.00 2.57
2566 2697 6.465439 TCAACACTTCAGTTCTACTCTTCA 57.535 37.500 0.00 0.00 0.00 3.02
2567 2698 6.367422 CCATCAACACTTCAGTTCTACTCTTC 59.633 42.308 0.00 0.00 0.00 2.87
2568 2699 6.183361 ACCATCAACACTTCAGTTCTACTCTT 60.183 38.462 0.00 0.00 0.00 2.85
2633 2764 7.641802 CGTAACTCGGATTAAACTAAGGACTAC 59.358 40.741 0.00 0.00 35.71 2.73
2634 2765 7.336931 ACGTAACTCGGATTAAACTAAGGACTA 59.663 37.037 0.00 0.00 44.69 2.59
2635 2766 6.151817 ACGTAACTCGGATTAAACTAAGGACT 59.848 38.462 0.00 0.00 44.69 3.85
2679 2920 2.034879 CGTCTGCATTGGCGGTCTT 61.035 57.895 0.00 0.00 46.81 3.01
2729 2973 2.449464 CAATCAATGCTCCAAGTGGGA 58.551 47.619 0.00 0.00 45.89 4.37
2773 3039 3.553096 GGCCAACGATCATGTAGGAGTAG 60.553 52.174 0.00 0.00 0.00 2.57
2835 3111 0.546267 ACAGCTGGATCAGGGTGAGT 60.546 55.000 19.93 0.00 35.30 3.41
2952 3228 2.743928 GCTGCTCCTGGACGTTGG 60.744 66.667 0.00 0.00 0.00 3.77
2954 3230 2.345244 CTGCTGCTCCTGGACGTT 59.655 61.111 0.00 0.00 0.00 3.99
2955 3231 3.699894 CCTGCTGCTCCTGGACGT 61.700 66.667 0.00 0.00 0.00 4.34
3056 3356 2.401766 CCATGAACAGCACCGAGGC 61.402 63.158 0.00 0.00 0.00 4.70
3090 3390 1.889530 CTTCCACACCTCGTCCCTCC 61.890 65.000 0.00 0.00 0.00 4.30
3223 3523 0.863538 CGGTGAGCGAGAAGATGACG 60.864 60.000 0.00 0.00 0.00 4.35
3364 3664 1.272807 GGAGCAGGGTGTGGTACTTA 58.727 55.000 0.00 0.00 36.87 2.24
3766 4066 3.133464 CCGTGCACGCCCATCATT 61.133 61.111 33.17 0.00 38.18 2.57
4097 4397 4.553330 ATTACTGGTTGAGGTTGTCGAT 57.447 40.909 0.00 0.00 0.00 3.59
4314 4640 5.233083 ACAACTGATGAGATTCCTGACAA 57.767 39.130 0.00 0.00 0.00 3.18
4526 4865 5.321927 TCTCACAGAGTGTTCTACCATACA 58.678 41.667 0.00 0.00 34.79 2.29
4527 4866 5.899120 TCTCACAGAGTGTTCTACCATAC 57.101 43.478 0.00 0.00 34.79 2.39
4528 4867 5.773176 TGTTCTCACAGAGTGTTCTACCATA 59.227 40.000 0.00 0.00 34.79 2.74
4529 4868 4.588951 TGTTCTCACAGAGTGTTCTACCAT 59.411 41.667 0.00 0.00 34.79 3.55
4585 4924 4.201950 ACACTCACATGCTCACAGTTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
4616 4955 2.417243 CCCACCGAGCAAAATTTGATCC 60.417 50.000 16.93 1.68 42.82 3.36
4632 4971 1.979619 ATTCGGATTCGGTCCCCACC 61.980 60.000 0.00 0.00 44.77 4.61
4700 5039 8.859090 ACATCATTGGTCATTTAGTTCTCAAAA 58.141 29.630 0.00 0.00 0.00 2.44
4701 5040 8.298854 CACATCATTGGTCATTTAGTTCTCAAA 58.701 33.333 0.00 0.00 0.00 2.69
4702 5041 7.094248 CCACATCATTGGTCATTTAGTTCTCAA 60.094 37.037 0.00 0.00 0.00 3.02
4703 5042 6.375174 CCACATCATTGGTCATTTAGTTCTCA 59.625 38.462 0.00 0.00 0.00 3.27
4704 5043 6.789262 CCACATCATTGGTCATTTAGTTCTC 58.211 40.000 0.00 0.00 0.00 2.87
4705 5044 6.764308 CCACATCATTGGTCATTTAGTTCT 57.236 37.500 0.00 0.00 0.00 3.01
4717 5056 6.284891 ACTAAATCCAAACCACATCATTGG 57.715 37.500 0.00 0.00 43.97 3.16
4718 5057 8.055279 ACTACTAAATCCAAACCACATCATTG 57.945 34.615 0.00 0.00 0.00 2.82
4719 5058 9.920946 ATACTACTAAATCCAAACCACATCATT 57.079 29.630 0.00 0.00 0.00 2.57
4724 5063 9.607988 CACATATACTACTAAATCCAAACCACA 57.392 33.333 0.00 0.00 0.00 4.17
4725 5064 9.609346 ACACATATACTACTAAATCCAAACCAC 57.391 33.333 0.00 0.00 0.00 4.16
4726 5065 9.607988 CACACATATACTACTAAATCCAAACCA 57.392 33.333 0.00 0.00 0.00 3.67
4727 5066 8.557029 GCACACATATACTACTAAATCCAAACC 58.443 37.037 0.00 0.00 0.00 3.27
4728 5067 8.273557 CGCACACATATACTACTAAATCCAAAC 58.726 37.037 0.00 0.00 0.00 2.93
4729 5068 7.042321 GCGCACACATATACTACTAAATCCAAA 60.042 37.037 0.30 0.00 0.00 3.28
4730 5069 6.422701 GCGCACACATATACTACTAAATCCAA 59.577 38.462 0.30 0.00 0.00 3.53
4731 5070 5.924254 GCGCACACATATACTACTAAATCCA 59.076 40.000 0.30 0.00 0.00 3.41
4732 5071 6.089551 CAGCGCACACATATACTACTAAATCC 59.910 42.308 11.47 0.00 0.00 3.01
4733 5072 6.400091 GCAGCGCACACATATACTACTAAATC 60.400 42.308 11.47 0.00 0.00 2.17
4734 5073 5.405571 GCAGCGCACACATATACTACTAAAT 59.594 40.000 11.47 0.00 0.00 1.40
4735 5074 4.743151 GCAGCGCACACATATACTACTAAA 59.257 41.667 11.47 0.00 0.00 1.85
4736 5075 4.295870 GCAGCGCACACATATACTACTAA 58.704 43.478 11.47 0.00 0.00 2.24
4737 5076 3.305131 GGCAGCGCACACATATACTACTA 60.305 47.826 11.47 0.00 0.00 1.82
4738 5077 2.545952 GGCAGCGCACACATATACTACT 60.546 50.000 11.47 0.00 0.00 2.57
4739 5078 1.792949 GGCAGCGCACACATATACTAC 59.207 52.381 11.47 0.00 0.00 2.73
4774 5113 6.529084 ACATCAGGATATTATTGGGTCCAA 57.471 37.500 4.78 4.78 40.47 3.53
4775 5114 5.279960 CGACATCAGGATATTATTGGGTCCA 60.280 44.000 0.00 0.00 33.12 4.02
4777 5116 4.631813 GCGACATCAGGATATTATTGGGTC 59.368 45.833 0.00 0.00 0.00 4.46
4778 5117 4.579869 GCGACATCAGGATATTATTGGGT 58.420 43.478 0.00 0.00 0.00 4.51
4821 5160 1.534729 AGCAGGAATTTCGTTGGACC 58.465 50.000 0.00 0.00 0.00 4.46
4825 5164 6.088085 GTGAATGTTAAGCAGGAATTTCGTTG 59.912 38.462 0.00 0.00 0.00 4.10
4830 5169 4.618227 GCGGTGAATGTTAAGCAGGAATTT 60.618 41.667 0.00 0.00 0.00 1.82
4838 5177 3.485947 TTGATGCGGTGAATGTTAAGC 57.514 42.857 0.00 0.00 0.00 3.09
4854 5195 3.011566 TGGTTGACAGTGGTGTTTGAT 57.988 42.857 0.00 0.00 36.88 2.57
4884 5225 8.774546 TCCCAATGCTATCAATAATGGTTAAA 57.225 30.769 0.00 0.00 0.00 1.52
4885 5226 8.774546 TTCCCAATGCTATCAATAATGGTTAA 57.225 30.769 0.00 0.00 0.00 2.01
4886 5227 8.954834 ATTCCCAATGCTATCAATAATGGTTA 57.045 30.769 0.00 0.00 0.00 2.85
4889 5230 8.472413 CCTAATTCCCAATGCTATCAATAATGG 58.528 37.037 0.00 0.00 0.00 3.16
4890 5231 9.028284 ACCTAATTCCCAATGCTATCAATAATG 57.972 33.333 0.00 0.00 0.00 1.90
4893 5246 8.859090 CAAACCTAATTCCCAATGCTATCAATA 58.141 33.333 0.00 0.00 0.00 1.90
4930 5283 5.710613 ATTTTTGAAACGCGTGAACATTT 57.289 30.435 14.98 0.57 0.00 2.32
4939 5293 6.575572 TGTCACTTACATATTTTTGAAACGCG 59.424 34.615 3.53 3.53 31.43 6.01
5012 5368 9.072294 GTTTGGATGGTACGAAGAAATATTTTG 57.928 33.333 1.43 0.00 0.00 2.44
5020 5376 3.773418 TGGTTTGGATGGTACGAAGAA 57.227 42.857 0.00 0.00 0.00 2.52
5022 5378 4.217550 ACATTTGGTTTGGATGGTACGAAG 59.782 41.667 0.00 0.00 0.00 3.79
5025 5381 5.124776 ACATACATTTGGTTTGGATGGTACG 59.875 40.000 1.34 0.00 39.34 3.67
5033 5389 3.831911 AGTGGGACATACATTTGGTTTGG 59.168 43.478 0.00 0.00 44.52 3.28
5038 5394 5.720371 TTTTCAGTGGGACATACATTTGG 57.280 39.130 0.00 0.00 44.52 3.28
5072 5428 8.795842 AAATGGCATGAACATATTTTTGACAT 57.204 26.923 0.00 0.00 32.77 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.