AutoCloner

Multiple sequence alignment - TraesCS1D01G255900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G255900	chr1D	100.000	5462	0	0	1	5462	348116091	348121552	0.000000e+00	10087.0
1	TraesCS1D01G255900	chr1D	89.299	271	29	0	675	945	67971814	67971544	1.880000e-89	340.0
2	TraesCS1D01G255900	chr1D	97.500	40	1	0	5423	5462	348115938	348115899	9.820000e-08	69.4
3	TraesCS1D01G255900	chr1B	97.826	4691	94	8	1	4687	107526742	107522056	0.000000e+00	8091.0
4	TraesCS1D01G255900	chr1B	91.504	718	16	14	4766	5462	107522060	107521367	0.000000e+00	946.0
5	TraesCS1D01G255900	chr7B	97.761	4690	100	5	1	4687	29635871	29631184	0.000000e+00	8074.0
6	TraesCS1D01G255900	chr7B	92.578	2075	139	9	2629	4695	149676178	149678245	0.000000e+00	2964.0
7	TraesCS1D01G255900	chr7B	90.403	719	23	9	4766	5462	29631188	29630494	0.000000e+00	904.0
8	TraesCS1D01G255900	chr7B	91.489	517	29	7	156	670	149674602	149675105	0.000000e+00	697.0
9	TraesCS1D01G255900	chr7B	91.667	324	25	1	4767	5088	149678363	149678686	1.080000e-121	448.0
10	TraesCS1D01G255900	chr7B	91.720	157	11	2	2	156	149644233	149644389	3.310000e-52	217.0
11	TraesCS1D01G255900	chr7B	95.349	86	4	0	4683	4768	173153355	173153440	2.650000e-28	137.0
12	TraesCS1D01G255900	chr7B	89.815	108	10	1	4677	4783	645193646	645193539	2.650000e-28	137.0
13	TraesCS1D01G255900	chr7B	97.500	40	1	0	5423	5462	29636021	29636060	9.820000e-08	69.4
14	TraesCS1D01G255900	chr7A	96.568	4691	152	6	1	4687	95125134	95120449	0.000000e+00	7762.0
15	TraesCS1D01G255900	chr7A	86.948	3241	368	36	822	4038	460612120	460615329	0.000000e+00	3591.0
16	TraesCS1D01G255900	chr7A	92.961	412	28	1	4767	5178	95120452	95120042	2.820000e-167	599.0
17	TraesCS1D01G255900	chr7A	86.415	265	13	2	5219	5462	95120038	95119776	9.020000e-68	268.0
18	TraesCS1D01G255900	chr6B	96.014	3939	123	14	1	3935	399049218	399045310	0.000000e+00	6373.0
19	TraesCS1D01G255900	chr6B	92.331	2647	161	18	2046	4685	487797142	487799753	0.000000e+00	3725.0
20	TraesCS1D01G255900	chr6B	94.804	1097	51	6	3594	4687	399045583	399044490	0.000000e+00	1705.0
21	TraesCS1D01G255900	chr6B	92.028	715	37	4	4766	5462	399044494	399043782	0.000000e+00	987.0
22	TraesCS1D01G255900	chr6B	84.908	868	124	7	3148	4012	694341	693478	0.000000e+00	870.0
23	TraesCS1D01G255900	chr6B	88.210	229	26	1	4766	4993	487799751	487799979	6.970000e-69	272.0
24	TraesCS1D01G255900	chr6B	78.571	490	42	20	5023	5462	487799978	487800454	1.170000e-66	265.0
25	TraesCS1D01G255900	chr6B	93.000	100	6	1	4683	4781	646733	646634	1.590000e-30	145.0
26	TraesCS1D01G255900	chr6B	84.286	70	10	1	5392	5461	399049343	399049411	3.530000e-07	67.6
27	TraesCS1D01G255900	chr2D	91.161	3903	246	40	822	4685	645277069	645280911	0.000000e+00	5204.0
28	TraesCS1D01G255900	chr2D	87.258	3045	335	37	822	3849	567621924	567624932	0.000000e+00	3424.0
29	TraesCS1D01G255900	chr2D	90.092	979	77	15	174	1145	506530112	506529147	0.000000e+00	1253.0
30	TraesCS1D01G255900	chr2D	88.626	422	31	8	4766	5180	645280909	645281320	1.060000e-136	497.0
31	TraesCS1D01G255900	chr2D	94.000	100	4	2	4683	4782	371692504	371692601	3.410000e-32	150.0
32	TraesCS1D01G255900	chr2D	77.612	268	34	6	5219	5462	645281315	645281580	7.380000e-29	139.0
33	TraesCS1D01G255900	chr1A	92.165	3612	225	28	822	4411	267172953	267176528	0.000000e+00	5049.0
34	TraesCS1D01G255900	chr1A	81.233	746	79	27	4766	5462	267176736	267177469	3.720000e-151	545.0
35	TraesCS1D01G255900	chr1A	94.964	139	7	0	4547	4685	267176600	267176738	9.210000e-53	219.0
36	TraesCS1D01G255900	chr1A	94.175	103	6	0	4682	4784	589793254	589793152	2.040000e-34	158.0
37	TraesCS1D01G255900	chr3B	93.949	2925	109	16	74	2964	269258292	269261182	0.000000e+00	4359.0
38	TraesCS1D01G255900	chr3B	79.518	581	53	22	4931	5462	650053552	650054115	2.420000e-93	353.0
39	TraesCS1D01G255900	chr3B	94.118	102	4	2	4675	4775	2309006	2308906	2.630000e-33	154.0
40	TraesCS1D01G255900	chr3B	95.349	86	4	0	4683	4768	452727843	452727928	2.650000e-28	137.0
41	TraesCS1D01G255900	chr2A	90.107	1213	94	17	174	1376	651502493	651501297	0.000000e+00	1552.0
42	TraesCS1D01G255900	chr2A	90.196	153	11	3	1	149	651502702	651502550	4.320000e-46	196.0
43	TraesCS1D01G255900	chr7D	87.366	934	81	18	3737	4667	260722943	260723842	0.000000e+00	1037.0
44	TraesCS1D01G255900	chr7D	93.432	472	14	5	493	964	260720448	260720902	0.000000e+00	684.0
45	TraesCS1D01G255900	chr7D	90.366	519	27	5	1	496	260697843	260698361	0.000000e+00	660.0
46	TraesCS1D01G255900	chr7D	86.905	420	49	5	4766	5180	260723866	260724284	2.980000e-127	466.0
47	TraesCS1D01G255900	chr7D	93.000	100	7	0	4672	4771	85908375	85908474	4.410000e-31	147.0
48	TraesCS1D01G255900	chr5D	88.304	342	33	6	4847	5183	538584798	538585137	2.370000e-108	403.0
49	TraesCS1D01G255900	chr5D	98.876	89	1	0	4683	4771	49290837	49290749	5.660000e-35	159.0
50	TraesCS1D01G255900	chr5A	87.536	345	35	5	174	511	570379175	570379518	5.130000e-105	392.0
51	TraesCS1D01G255900	chr6A	94.175	103	6	0	4676	4778	1841223	1841121	2.040000e-34	158.0
52	TraesCS1D01G255900	chr4A	91.228	114	8	2	4683	4795	516930338	516930450	2.630000e-33	154.0
53	TraesCS1D01G255900	chr3A	91.892	111	8	1	4681	4790	516801724	516801834	2.630000e-33	154.0
54	TraesCS1D01G255900	chr5B	95.745	94	3	1	4683	4776	600647582	600647490	3.410000e-32	150.0
55	TraesCS1D01G255900	chr4B	92.453	106	6	2	4665	4770	317037429	317037326	3.410000e-32	150.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G255900	chr1D	348116091	348121552	5461	False	10087.000000	10087	100.000000	1	5462	1	chr1D.!!$F1	5461
1	TraesCS1D01G255900	chr1B	107521367	107526742	5375	True	4518.500000	8091	94.665000	1	5462	2	chr1B.!!$R1	5461
2	TraesCS1D01G255900	chr7B	29630494	29635871	5377	True	4489.000000	8074	94.082000	1	5462	2	chr7B.!!$R2	5461
3	TraesCS1D01G255900	chr7B	149674602	149678686	4084	False	1369.666667	2964	91.911333	156	5088	3	chr7B.!!$F4	4932
4	TraesCS1D01G255900	chr7A	460612120	460615329	3209	False	3591.000000	3591	86.948000	822	4038	1	chr7A.!!$F1	3216
5	TraesCS1D01G255900	chr7A	95119776	95125134	5358	True	2876.333333	7762	91.981333	1	5462	3	chr7A.!!$R1	5461
6	TraesCS1D01G255900	chr6B	399043782	399049218	5436	True	3021.666667	6373	94.282000	1	5462	3	chr6B.!!$R3	5461
7	TraesCS1D01G255900	chr6B	487797142	487800454	3312	False	1420.666667	3725	86.370667	2046	5462	3	chr6B.!!$F2	3416
8	TraesCS1D01G255900	chr6B	693478	694341	863	True	870.000000	870	84.908000	3148	4012	1	chr6B.!!$R2	864
9	TraesCS1D01G255900	chr2D	567621924	567624932	3008	False	3424.000000	3424	87.258000	822	3849	1	chr2D.!!$F2	3027
10	TraesCS1D01G255900	chr2D	645277069	645281580	4511	False	1946.666667	5204	85.799667	822	5462	3	chr2D.!!$F3	4640
11	TraesCS1D01G255900	chr2D	506529147	506530112	965	True	1253.000000	1253	90.092000	174	1145	1	chr2D.!!$R1	971
12	TraesCS1D01G255900	chr1A	267172953	267177469	4516	False	1937.666667	5049	89.454000	822	5462	3	chr1A.!!$F1	4640
13	TraesCS1D01G255900	chr3B	269258292	269261182	2890	False	4359.000000	4359	93.949000	74	2964	1	chr3B.!!$F1	2890
14	TraesCS1D01G255900	chr3B	650053552	650054115	563	False	353.000000	353	79.518000	4931	5462	1	chr3B.!!$F3	531
15	TraesCS1D01G255900	chr2A	651501297	651502702	1405	True	874.000000	1552	90.151500	1	1376	2	chr2A.!!$R1	1375
16	TraesCS1D01G255900	chr7D	260720448	260724284	3836	False	729.000000	1037	89.234333	493	5180	3	chr7D.!!$F3	4687
17	TraesCS1D01G255900	chr7D	260697843	260698361	518	False	660.000000	660	90.366000	1	496	1	chr7D.!!$F2	495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
381	421	2.428890	GAGGACGGTGATGAATCTCAGT	59.571	50.000	0.00	0.00	32.87	3.41	F
1505	1586	3.005155	GCAAGCAAAGAAAGGAGACACAT	59.995	43.478	0.00	0.00	0.00	3.21	F
2101	2190	0.104671	GGCTGCAAAGGCTGTTTGAA	59.895	50.000	14.05	4.83	41.91	2.69	F
2254	2343	0.597568	TTGAGCATTTTGGGCGTCTG	59.402	50.000	0.00	0.00	36.08	3.51	F
3039	3140	3.808728	GCTTCACATGCCAAGAGGTATA	58.191	45.455	8.16	0.00	38.26	1.47	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2101	2190	0.686789	GTGCCCATTGCTCCCTTTTT	59.313	50.000	0.00	0.00	42.00	1.94	R
2402	2491	3.104512	TGTCATAGTTCAGGGTCCGAAT	58.895	45.455	0.00	0.00	0.00	3.34	R
3787	5636	1.358103	ACCACTGGTAGGAGTCTGCTA	59.642	52.381	0.00	0.00	32.11	3.49	R
4094	5948	6.245408	ACCAAGCCTATTCAATACAAGACAA	58.755	36.000	0.00	0.00	0.00	3.18	R
4500	6378	2.748461	TCACTGTTTTGCTGCGTAAC	57.252	45.000	9.04	9.04	0.00	2.50	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
150	154	6.715264	AGACCTTTGTTAATCCAGACGAAAAT	59.285	34.615	0.00	0.00	0.00	1.82
239	276	6.585702	CGTCAAACAAATTCAATATCAGGCAA	59.414	34.615	0.00	0.00	0.00	4.52
290	330	4.722700	TCGGGCAGAAGCAAGGCC	62.723	66.667	0.00	0.00	46.99	5.19
381	421	2.428890	GAGGACGGTGATGAATCTCAGT	59.571	50.000	0.00	0.00	32.87	3.41
572	617	3.621268	TGTGTTTGCTTCGTATAGGATGC	59.379	43.478	20.49	20.49	37.54	3.91
1335	1415	3.458118	TCCCAAAGGAAAGTCACAGAAGA	59.542	43.478	0.00	0.00	40.08	2.87
1505	1586	3.005155	GCAAGCAAAGAAAGGAGACACAT	59.995	43.478	0.00	0.00	0.00	3.21
2026	2115	7.877003	TCTATGATATTGAGGAAGAAGACGAC	58.123	38.462	0.00	0.00	0.00	4.34
2101	2190	0.104671	GGCTGCAAAGGCTGTTTGAA	59.895	50.000	14.05	4.83	41.91	2.69
2133	2222	0.988063	TGGGCACTAGTGTATGGCAA	59.012	50.000	23.44	1.01	42.93	4.52
2254	2343	0.597568	TTGAGCATTTTGGGCGTCTG	59.402	50.000	0.00	0.00	36.08	3.51
2401	2490	5.227569	TCAAGATGTTTCAGGAGCAAGTA	57.772	39.130	0.00	0.00	0.00	2.24
2402	2491	5.620206	TCAAGATGTTTCAGGAGCAAGTAA	58.380	37.500	0.00	0.00	0.00	2.24
2626	2715	8.798859	ATAATATCAAGCATATCCCTGAACAC	57.201	34.615	0.00	0.00	0.00	3.32
2752	2842	5.126061	GGACTTGTGCAGAATGTTTATCCAT	59.874	40.000	0.00	0.00	39.31	3.41
3039	3140	3.808728	GCTTCACATGCCAAGAGGTATA	58.191	45.455	8.16	0.00	38.26	1.47
3208	3311	8.778059	ACCCAATCTTAATGGTATAAGAAGTCA	58.222	33.333	1.33	0.00	43.20	3.41
3787	5636	9.339850	CAGGACAGAATCTATCATTCTTTCAAT	57.660	33.333	10.95	0.00	36.86	2.57
4316	6191	3.265221	TGAACCTCTTTCTGGCATCATCT	59.735	43.478	0.00	0.00	34.97	2.90
4695	6581	3.385755	GCTTAATTGGTACTCCCTCCGTA	59.614	47.826	0.00	0.00	0.00	4.02
4696	6582	4.141869	GCTTAATTGGTACTCCCTCCGTAA	60.142	45.833	0.00	0.00	0.00	3.18
4697	6583	5.627503	GCTTAATTGGTACTCCCTCCGTAAA	60.628	44.000	0.00	0.00	0.00	2.01
4698	6584	3.900966	ATTGGTACTCCCTCCGTAAAC	57.099	47.619	0.00	0.00	0.00	2.01
4699	6585	2.610438	TGGTACTCCCTCCGTAAACT	57.390	50.000	0.00	0.00	0.00	2.66
4704	6590	6.376248	TGGTACTCCCTCCGTAAACTAATAT	58.624	40.000	0.00	0.00	0.00	1.28
4705	6591	7.526041	TGGTACTCCCTCCGTAAACTAATATA	58.474	38.462	0.00	0.00	0.00	0.86
4706	6592	8.004215	TGGTACTCCCTCCGTAAACTAATATAA	58.996	37.037	0.00	0.00	0.00	0.98
4707	6593	8.518702	GGTACTCCCTCCGTAAACTAATATAAG	58.481	40.741	0.00	0.00	0.00	1.73
4708	6594	9.289782	GTACTCCCTCCGTAAACTAATATAAGA	57.710	37.037	0.00	0.00	0.00	2.10
4709	6595	8.406730	ACTCCCTCCGTAAACTAATATAAGAG	57.593	38.462	0.00	0.00	0.00	2.85
4710	6596	7.039853	ACTCCCTCCGTAAACTAATATAAGAGC	60.040	40.741	0.00	0.00	0.00	4.09
4711	6597	6.072286	TCCCTCCGTAAACTAATATAAGAGCG	60.072	42.308	0.00	0.00	0.00	5.03
4712	6598	6.294397	CCCTCCGTAAACTAATATAAGAGCGT	60.294	42.308	0.00	0.00	0.00	5.07
4713	6599	7.144000	CCTCCGTAAACTAATATAAGAGCGTT	58.856	38.462	0.00	0.00	0.00	4.84
4714	6600	7.650903	CCTCCGTAAACTAATATAAGAGCGTTT	59.349	37.037	0.00	0.00	0.00	3.60
4716	6602	9.669353	TCCGTAAACTAATATAAGAGCGTTTAG	57.331	33.333	0.00	0.00	30.36	1.85
4717	6603	9.669353	CCGTAAACTAATATAAGAGCGTTTAGA	57.331	33.333	0.00	0.00	30.36	2.10
4762	6648	9.530633	AAACGCTCTTATATTAGTTTACAGAGG	57.469	33.333	0.00	0.00	31.14	3.69
4763	6649	7.659186	ACGCTCTTATATTAGTTTACAGAGGG	58.341	38.462	8.36	8.36	42.53	4.30
4764	6650	7.504911	ACGCTCTTATATTAGTTTACAGAGGGA	59.495	37.037	14.96	0.00	40.49	4.20
5109	7052	1.301293	CTCCAAGACCTGGCCCTTC	59.699	63.158	0.00	0.00	45.98	3.46
5217	7181	0.106708	GTGAGACAAGGCAGTGGACA	59.893	55.000	0.00	0.00	0.00	4.02
5408	7398	2.971428	TAGCGCCAGCCGTTAGATGC	62.971	60.000	2.29	0.00	46.67	3.91
5418	7408	2.224314	GCCGTTAGATGCAGAATTAGCC	59.776	50.000	0.00	0.00	0.00	3.93

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	9	4.038763	TGCCAGGTATTACGGACAGATAAG	59.961	45.833	0.00	0.00	0.00	1.73
150	154	3.002862	GGTGAGATTTGCGTGTTTGTGTA	59.997	43.478	0.00	0.00	0.00	2.90
239	276	6.015095	CCTTAGCCTTGTGAATTTCCTTCTTT	60.015	38.462	0.00	0.00	34.75	2.52
290	330	0.991920	TTTCCTTCAGCCCCTAGGTG	59.008	55.000	8.29	0.00	45.72	4.00
381	421	8.762645	AGATCATGAAGACTATACTTTTGGTCA	58.237	33.333	0.00	0.00	31.75	4.02
1335	1415	5.510671	CGACTTCAGTGTTTGCTATTTGTT	58.489	37.500	0.00	0.00	0.00	2.83
1621	1703	8.210265	TCACCAAACATTGCATAGTCTGATATA	58.790	33.333	0.00	0.00	0.00	0.86
2101	2190	0.686789	GTGCCCATTGCTCCCTTTTT	59.313	50.000	0.00	0.00	42.00	1.94
2133	2222	5.263599	TCATGTGGGCTGAGAATGTATTTT	58.736	37.500	0.00	0.00	0.00	1.82
2254	2343	6.431198	TCTACAAATCTTTTATCCGCAACC	57.569	37.500	0.00	0.00	0.00	3.77
2401	2490	3.517901	TGTCATAGTTCAGGGTCCGAATT	59.482	43.478	0.00	0.00	0.00	2.17
2402	2491	3.104512	TGTCATAGTTCAGGGTCCGAAT	58.895	45.455	0.00	0.00	0.00	3.34
3039	3140	4.262079	CGTACAGTCTTCTCCTTGACCTTT	60.262	45.833	0.00	0.00	34.02	3.11
3137	3239	5.048153	GAAAGGCATTTCAGGTTGTAGTC	57.952	43.478	18.39	0.00	43.64	2.59
3208	3311	9.890629	AAAAAGGAGATAAAGTCAAAAAGCTTT	57.109	25.926	5.69	5.69	38.35	3.51
3476	3610	3.828451	AGGTCACAGGTGATTGAAAATGG	59.172	43.478	5.29	0.00	42.18	3.16
3787	5636	1.358103	ACCACTGGTAGGAGTCTGCTA	59.642	52.381	0.00	0.00	32.11	3.49
4094	5948	6.245408	ACCAAGCCTATTCAATACAAGACAA	58.755	36.000	0.00	0.00	0.00	3.18
4316	6191	7.041167	GCTACTGATGGTGATATTTGCATACAA	60.041	37.037	0.00	0.00	0.00	2.41
4500	6378	2.748461	TCACTGTTTTGCTGCGTAAC	57.252	45.000	9.04	9.04	0.00	2.50
4736	6622	9.530633	CCTCTGTAAACTAATATAAGAGCGTTT	57.469	33.333	0.00	0.00	0.00	3.60
4737	6623	8.142551	CCCTCTGTAAACTAATATAAGAGCGTT	58.857	37.037	0.00	0.00	0.00	4.84
4739	6625	7.883217	TCCCTCTGTAAACTAATATAAGAGCG	58.117	38.462	0.00	0.00	0.00	5.03
4740	6626	8.862085	ACTCCCTCTGTAAACTAATATAAGAGC	58.138	37.037	0.00	0.00	0.00	4.09
4746	6632	9.299465	GCTAGTACTCCCTCTGTAAACTAATAT	57.701	37.037	0.00	0.00	0.00	1.28
4748	6634	7.355890	AGCTAGTACTCCCTCTGTAAACTAAT	58.644	38.462	0.00	0.00	0.00	1.73
4749	6635	6.729428	AGCTAGTACTCCCTCTGTAAACTAA	58.271	40.000	0.00	0.00	0.00	2.24
4750	6636	6.324601	AGCTAGTACTCCCTCTGTAAACTA	57.675	41.667	0.00	0.00	0.00	2.24
4751	6637	5.195848	AGCTAGTACTCCCTCTGTAAACT	57.804	43.478	0.00	0.00	0.00	2.66
4752	6638	5.008911	GCTAGCTAGTACTCCCTCTGTAAAC	59.991	48.000	21.62	0.00	0.00	2.01
4753	6639	5.104024	AGCTAGCTAGTACTCCCTCTGTAAA	60.104	44.000	17.69	0.00	0.00	2.01
4755	6641	3.975312	AGCTAGCTAGTACTCCCTCTGTA	59.025	47.826	17.69	0.00	0.00	2.74
4756	6642	2.781174	AGCTAGCTAGTACTCCCTCTGT	59.219	50.000	17.69	0.00	0.00	3.41
4757	6643	3.146066	CAGCTAGCTAGTACTCCCTCTG	58.854	54.545	18.86	13.18	0.00	3.35
4758	6644	2.781174	ACAGCTAGCTAGTACTCCCTCT	59.219	50.000	18.86	5.13	0.00	3.69
4759	6645	3.217681	ACAGCTAGCTAGTACTCCCTC	57.782	52.381	18.86	2.82	0.00	4.30
4760	6646	3.053544	TCAACAGCTAGCTAGTACTCCCT	60.054	47.826	18.86	6.56	0.00	4.20
4761	6647	3.067040	GTCAACAGCTAGCTAGTACTCCC	59.933	52.174	18.86	4.26	0.00	4.30
4762	6648	3.949113	AGTCAACAGCTAGCTAGTACTCC	59.051	47.826	18.86	4.98	0.00	3.85
4763	6649	5.336744	CAAGTCAACAGCTAGCTAGTACTC	58.663	45.833	18.86	6.88	0.00	2.59
4764	6650	4.381079	GCAAGTCAACAGCTAGCTAGTACT	60.381	45.833	18.86	15.07	0.00	2.73
4943	6879	2.989639	CCATCCAGCGGGTCTTCA	59.010	61.111	1.81	0.00	34.93	3.02
5109	7052	0.867753	CTCTTGATTCGTCCTCGCGG	60.868	60.000	6.13	0.00	36.96	6.46
5408	7398	1.064463	TGCTCCCCTTGGCTAATTCTG	60.064	52.381	0.00	0.00	0.00	3.02
5418	7408	2.124570	CCATCCGTGCTCCCCTTG	60.125	66.667	0.00	0.00	0.00	3.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.