Multiple sequence alignment - TraesCS1D01G255700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G255700 chr1D 100.000 7798 0 0 1 7798 348054534 348062331 0.000000e+00 14401.0
1 TraesCS1D01G255700 chr1D 86.687 323 27 8 7487 7798 356816760 356817077 2.080000e-90 344.0
2 TraesCS1D01G255700 chr1D 100.000 28 0 0 6053 6080 348128566 348128539 1.400000e-02 52.8
3 TraesCS1D01G255700 chr1B 93.826 3110 139 23 516 3590 469972217 469975308 0.000000e+00 4630.0
4 TraesCS1D01G255700 chr1B 96.212 2508 42 16 3603 6081 469975403 469977886 0.000000e+00 4056.0
5 TraesCS1D01G255700 chr1B 95.559 1171 40 4 6127 7297 469977899 469979057 0.000000e+00 1864.0
6 TraesCS1D01G255700 chr1B 90.459 283 12 6 28 300 469971524 469971801 7.440000e-95 359.0
7 TraesCS1D01G255700 chr1B 86.869 198 16 4 301 490 469972027 469972222 6.130000e-51 213.0
8 TraesCS1D01G255700 chr1B 97.368 38 0 1 7375 7411 469979323 469979360 6.530000e-06 63.9
9 TraesCS1D01G255700 chr1A 93.123 3170 143 31 467 3590 448917999 448921139 0.000000e+00 4577.0
10 TraesCS1D01G255700 chr1A 95.664 2583 53 18 3603 6153 448921232 448923787 0.000000e+00 4095.0
11 TraesCS1D01G255700 chr1A 95.954 964 20 9 6152 7112 448923949 448924896 0.000000e+00 1546.0
12 TraesCS1D01G255700 chr1A 89.662 503 30 8 1 484 448916437 448916936 8.590000e-174 621.0
13 TraesCS1D01G255700 chr1A 85.714 322 35 6 7487 7798 186741959 186742279 5.830000e-86 329.0
14 TraesCS1D01G255700 chr1A 85.256 312 34 4 7490 7790 547951998 547951688 2.110000e-80 311.0
15 TraesCS1D01G255700 chr1A 91.589 214 16 2 7152 7365 448924880 448925091 2.130000e-75 294.0
16 TraesCS1D01G255700 chr4D 89.752 322 22 3 7487 7798 220324290 220323970 1.220000e-107 401.0
17 TraesCS1D01G255700 chr4D 94.737 38 2 0 6053 6090 455659418 455659455 8.450000e-05 60.2
18 TraesCS1D01G255700 chr4D 100.000 28 0 0 6053 6080 381882640 381882613 1.400000e-02 52.8
19 TraesCS1D01G255700 chr4D 100.000 28 0 0 6053 6080 509646399 509646372 1.400000e-02 52.8
20 TraesCS1D01G255700 chr4A 87.926 323 27 4 7487 7798 608148705 608148384 3.440000e-98 370.0
21 TraesCS1D01G255700 chr4A 94.444 36 2 0 6055 6090 4626071 4626106 1.000000e-03 56.5
22 TraesCS1D01G255700 chr3D 87.654 324 27 8 7487 7798 409020187 409019865 1.600000e-96 364.0
23 TraesCS1D01G255700 chr7D 87.539 321 27 7 7490 7798 470218504 470218823 7.440000e-95 359.0
24 TraesCS1D01G255700 chr7D 83.642 324 39 6 7487 7798 446349878 446350199 7.650000e-75 292.0
25 TraesCS1D01G255700 chr7D 87.121 132 15 2 537 667 588081779 588081909 1.750000e-31 148.0
26 TraesCS1D01G255700 chr2D 87.307 323 28 8 7487 7798 476966489 476966169 2.680000e-94 357.0
27 TraesCS1D01G255700 chr2D 86.068 323 33 4 7487 7798 456228046 456228367 3.490000e-88 337.0
28 TraesCS1D01G255700 chr2D 85.759 323 32 9 7487 7797 639123494 639123174 5.830000e-86 329.0
29 TraesCS1D01G255700 chr2D 94.595 37 2 0 6054 6090 608200130 608200166 3.040000e-04 58.4
30 TraesCS1D01G255700 chr7A 84.595 370 40 12 7442 7798 629346954 629346589 1.240000e-92 351.0
31 TraesCS1D01G255700 chr7A 82.500 320 43 6 7487 7795 732324798 732325115 1.290000e-67 268.0
32 TraesCS1D01G255700 chr7A 87.121 132 15 2 537 667 679957020 679957150 1.750000e-31 148.0
33 TraesCS1D01G255700 chr3B 86.792 318 32 5 7487 7796 825962519 825962204 5.790000e-91 346.0
34 TraesCS1D01G255700 chr3B 83.660 153 18 4 540 688 447622197 447622346 3.790000e-28 137.0
35 TraesCS1D01G255700 chr3B 82.166 157 24 4 538 692 528176339 528176185 1.770000e-26 132.0
36 TraesCS1D01G255700 chr3B 92.105 38 3 0 6053 6090 503721649 503721612 4.000000e-03 54.7
37 TraesCS1D01G255700 chr6A 89.925 268 23 4 7533 7798 604835534 604835269 7.490000e-90 342.0
38 TraesCS1D01G255700 chr6D 83.438 320 43 6 7487 7798 254904357 254904674 9.900000e-74 289.0
39 TraesCS1D01G255700 chr5A 85.621 153 15 7 545 693 303399955 303399806 3.770000e-33 154.0
40 TraesCS1D01G255700 chr7B 84.314 153 20 4 537 688 660651258 660651407 6.310000e-31 147.0
41 TraesCS1D01G255700 chr5B 83.553 152 20 4 539 688 243851015 243851163 3.790000e-28 137.0
42 TraesCS1D01G255700 chr5D 100.000 28 0 0 7159 7186 397614641 397614614 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G255700 chr1D 348054534 348062331 7797 False 14401.000000 14401 100.000000 1 7798 1 chr1D.!!$F1 7797
1 TraesCS1D01G255700 chr1B 469971524 469979360 7836 False 1864.316667 4630 93.382167 28 7411 6 chr1B.!!$F1 7383
2 TraesCS1D01G255700 chr1A 448916437 448925091 8654 False 2226.600000 4577 93.198400 1 7365 5 chr1A.!!$F2 7364

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 2250 0.556258 CCCCAAACCCTAATCCCTCC 59.444 60.000 0.00 0.0 0.00 4.30 F
1227 2575 0.026285 GCGATTTCCATTCGGACGTG 59.974 55.000 0.00 0.0 42.67 4.49 F
1564 2920 0.034896 TTCGGTTGAAGTCTCCAGCC 59.965 55.000 0.00 0.0 0.00 4.85 F
1717 3076 0.460987 GCTGTCGCCATAGAGCAACT 60.461 55.000 0.00 0.0 35.88 3.16 F
2100 3460 0.875059 GCAGTAAGCACTTGGTGGTC 59.125 55.000 2.88 0.0 43.73 4.02 F
3444 4839 1.134250 TGCATGCGTGTATGGGTACAT 60.134 47.619 14.09 0.0 42.43 2.29 F
4678 6157 2.757868 CTCCAATCTCGACTTCAGAGGT 59.242 50.000 0.00 0.0 36.45 3.85 F
6101 7611 4.199310 AGCTTACAGAGACAGCAAAAACA 58.801 39.130 0.00 0.0 35.88 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2876 4268 0.040958 GCTCTTGGACTTGTGCAACG 60.041 55.000 3.63 1.94 42.39 4.10 R
3444 4839 0.767998 TCCACATAACCACAGGCACA 59.232 50.000 0.00 0.00 0.00 4.57 R
3776 5253 4.307432 GACTACAACAAGTCAGCTAGCAA 58.693 43.478 18.83 0.90 44.41 3.91 R
3840 5317 3.937706 GAGAATCACTGACAATGACCCAG 59.062 47.826 0.00 0.00 33.17 4.45 R
4024 5503 4.156477 AGCTCCTTAGACACTGAAAGAGT 58.844 43.478 0.00 0.00 41.67 3.24 R
4761 6240 1.270518 TGTTCTGTCAGGAAGCTCAGC 60.271 52.381 0.00 0.00 0.00 4.26 R
6645 8321 0.106519 ACTGGCCTTGCAACTTCAGT 60.107 50.000 3.32 14.41 0.00 3.41 R
7750 9625 0.031043 CCCGCGTGTATATCCGAACA 59.969 55.000 4.92 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 8.355169 TCGTAGATTGTTCTATATGTTGGTACC 58.645 37.037 4.43 4.43 36.84 3.34
93 95 6.984474 AGATTGTTCTATATGTTGGTACCACG 59.016 38.462 16.04 0.00 0.00 4.94
94 96 5.664294 TGTTCTATATGTTGGTACCACGT 57.336 39.130 16.04 13.50 0.00 4.49
95 97 6.772360 TGTTCTATATGTTGGTACCACGTA 57.228 37.500 16.04 15.18 0.00 3.57
190 201 7.609918 TCTTCCGTTTCCTTGAATTGAATCATA 59.390 33.333 0.00 0.00 0.00 2.15
245 256 1.661463 TGCAACTGGGATCTTCCTCT 58.339 50.000 0.00 0.00 36.57 3.69
267 286 2.615912 GAGCTCCATTTCAGTATGTGGC 59.384 50.000 0.87 0.00 37.40 5.01
272 291 2.223340 CCATTTCAGTATGTGGCGCTTC 60.223 50.000 7.64 0.79 37.40 3.86
277 296 2.100087 TCAGTATGTGGCGCTTCGATTA 59.900 45.455 7.64 0.00 37.40 1.75
281 300 1.803334 TGTGGCGCTTCGATTAGTTT 58.197 45.000 7.64 0.00 0.00 2.66
302 546 7.075741 AGTTTTGAAATCGTCCTTTGATAACG 58.924 34.615 0.00 0.00 37.74 3.18
353 597 8.848474 TTTATTCTTTTTCGAGAACATCCTCT 57.152 30.769 0.00 0.00 38.39 3.69
354 598 6.734104 ATTCTTTTTCGAGAACATCCTCTG 57.266 37.500 0.00 0.00 38.39 3.35
407 657 6.884280 TTTCTTCTTGAGAAAGACAATCCC 57.116 37.500 0.00 0.00 46.69 3.85
426 676 4.672899 TCCCTTTTCTAAGTCAATTGGGG 58.327 43.478 5.42 4.26 33.35 4.96
473 725 2.069273 CCAACGAAGATCGAGCAGTTT 58.931 47.619 2.38 0.00 43.74 2.66
474 726 2.092838 CCAACGAAGATCGAGCAGTTTC 59.907 50.000 2.38 0.00 43.74 2.78
475 727 1.618861 ACGAAGATCGAGCAGTTTCG 58.381 50.000 18.24 18.24 43.74 3.46
479 731 4.524749 CGAAGATCGAGCAGTTTCGTATA 58.475 43.478 13.41 0.00 43.74 1.47
484 736 8.867112 AAGATCGAGCAGTTTCGTATATTTTA 57.133 30.769 2.38 0.00 41.22 1.52
487 739 8.867112 ATCGAGCAGTTTCGTATATTTTAGAA 57.133 30.769 0.00 0.00 41.22 2.10
549 1881 9.939802 CTAATAGTTACTGTTACCTTTGTTCCT 57.060 33.333 0.00 0.00 0.00 3.36
613 1945 6.201517 ACAGATTGAAATGAGTGAACAAACG 58.798 36.000 0.00 0.00 0.00 3.60
616 1948 4.566545 TGAAATGAGTGAACAAACGCAT 57.433 36.364 0.00 0.00 41.59 4.73
622 1954 6.747659 ATGAGTGAACAAACGCATTAAAAC 57.252 33.333 0.00 0.00 37.29 2.43
624 1956 6.269315 TGAGTGAACAAACGCATTAAAACAT 58.731 32.000 0.00 0.00 0.00 2.71
681 2018 6.281405 ACATCTCATACTATTGGAAACGGAC 58.719 40.000 0.00 0.00 0.00 4.79
784 2123 2.279073 CCAGGGCGGGTCTCTCTA 59.721 66.667 0.00 0.00 0.00 2.43
785 2124 1.830408 CCAGGGCGGGTCTCTCTAG 60.830 68.421 0.00 0.00 0.00 2.43
786 2125 1.076632 CAGGGCGGGTCTCTCTAGT 60.077 63.158 0.00 0.00 0.00 2.57
787 2126 1.104577 CAGGGCGGGTCTCTCTAGTC 61.105 65.000 0.00 0.00 0.00 2.59
788 2127 1.227946 GGGCGGGTCTCTCTAGTCT 59.772 63.158 0.00 0.00 0.00 3.24
800 2139 3.244582 TCTCTAGTCTCGGCCTCTATCT 58.755 50.000 0.00 0.00 0.00 1.98
822 2161 2.036414 TGCAGCCTCCTCTCTCGT 59.964 61.111 0.00 0.00 0.00 4.18
911 2250 0.556258 CCCCAAACCCTAATCCCTCC 59.444 60.000 0.00 0.00 0.00 4.30
944 2283 1.374947 CGGAACCATCCACCTGTGT 59.625 57.895 0.00 0.00 46.97 3.72
962 2301 1.229209 TCCGGGTTCCTCTGCTTCT 60.229 57.895 0.00 0.00 0.00 2.85
1047 2386 4.214327 CTCCGCGAGCTCTTCCCC 62.214 72.222 8.23 0.00 0.00 4.81
1087 2426 3.151710 CCGTCTCGCATGGGGGTA 61.152 66.667 9.78 0.00 0.00 3.69
1088 2427 2.106332 CGTCTCGCATGGGGGTAC 59.894 66.667 9.78 5.93 0.00 3.34
1128 2471 2.846665 ACGGGGGATGATTGGAATTT 57.153 45.000 0.00 0.00 0.00 1.82
1129 2472 3.114643 ACGGGGGATGATTGGAATTTT 57.885 42.857 0.00 0.00 0.00 1.82
1130 2473 3.449918 ACGGGGGATGATTGGAATTTTT 58.550 40.909 0.00 0.00 0.00 1.94
1145 2488 3.346101 TTTTTGTTCGGCGGCGAT 58.654 50.000 35.04 0.00 0.00 4.58
1160 2503 2.106683 CGATGCGAGGGTTTGGGTC 61.107 63.158 0.00 0.00 0.00 4.46
1171 2514 4.498493 AGGGTTTGGGTCATTGGTAATTT 58.502 39.130 0.00 0.00 0.00 1.82
1179 2526 3.119137 GGTCATTGGTAATTTCACCTGCC 60.119 47.826 0.00 0.00 39.50 4.85
1209 2556 6.759497 AACTTGTTACAGATTGGGAATAGC 57.241 37.500 0.00 0.00 0.00 2.97
1226 2574 0.108329 AGCGATTTCCATTCGGACGT 60.108 50.000 0.00 0.00 42.67 4.34
1227 2575 0.026285 GCGATTTCCATTCGGACGTG 59.974 55.000 0.00 0.00 42.67 4.49
1228 2576 1.355971 CGATTTCCATTCGGACGTGT 58.644 50.000 0.00 0.00 42.67 4.49
1238 2586 4.288531 CATTCGGACGTGTACTAGGATTC 58.711 47.826 0.00 0.00 0.00 2.52
1272 2625 1.065709 GGCGGGGTCTGATTTTAGTCA 60.066 52.381 0.00 0.00 0.00 3.41
1274 2627 2.354805 GCGGGGTCTGATTTTAGTCACT 60.355 50.000 0.00 0.00 0.00 3.41
1318 2674 5.703978 AGATCGATTCATACTGTCTCTGG 57.296 43.478 0.00 0.00 0.00 3.86
1355 2711 3.572255 TCTTGTTAGGGGAATTGTTGTGC 59.428 43.478 0.00 0.00 0.00 4.57
1387 2743 1.468054 GCAATCCGCCATTCAGTGTTC 60.468 52.381 0.00 0.00 32.94 3.18
1408 2764 1.597797 ATTTGTCCATGGCTGCGGTG 61.598 55.000 6.96 0.00 0.00 4.94
1509 2865 2.746277 GCCGATTCCGCTGTGGTT 60.746 61.111 7.20 0.00 39.52 3.67
1551 2907 3.646162 TGCCATCTATGATAGGTTCGGTT 59.354 43.478 0.00 0.00 0.00 4.44
1560 2916 3.194968 TGATAGGTTCGGTTGAAGTCTCC 59.805 47.826 0.00 0.00 33.98 3.71
1564 2920 0.034896 TTCGGTTGAAGTCTCCAGCC 59.965 55.000 0.00 0.00 0.00 4.85
1587 2943 1.476007 ATCAGGAGGCTGCGGTATCC 61.476 60.000 6.02 9.48 0.00 2.59
1631 2987 1.083806 TCTGCGAATCACGATGCACC 61.084 55.000 0.00 0.00 45.77 5.01
1676 3035 8.144478 TGCTGGTAAGTATGAAGACTGATATTC 58.856 37.037 0.00 0.00 0.00 1.75
1677 3036 8.144478 GCTGGTAAGTATGAAGACTGATATTCA 58.856 37.037 0.00 0.00 40.23 2.57
1679 3038 9.987272 TGGTAAGTATGAAGACTGATATTCATG 57.013 33.333 9.96 0.00 44.56 3.07
1684 3043 8.538701 AGTATGAAGACTGATATTCATGGATCC 58.461 37.037 4.20 4.20 44.56 3.36
1685 3044 7.571071 ATGAAGACTGATATTCATGGATCCT 57.429 36.000 14.23 0.00 43.52 3.24
1695 3054 3.497103 TCATGGATCCTTGTATGCTGG 57.503 47.619 23.12 0.16 0.00 4.85
1715 3074 4.521075 GCTGTCGCCATAGAGCAA 57.479 55.556 0.00 0.00 35.88 3.91
1717 3076 0.460987 GCTGTCGCCATAGAGCAACT 60.461 55.000 0.00 0.00 35.88 3.16
1824 3183 3.680490 TCATGAACCTGCGGAATTTACA 58.320 40.909 0.00 0.00 0.00 2.41
2100 3460 0.875059 GCAGTAAGCACTTGGTGGTC 59.125 55.000 2.88 0.00 43.73 4.02
2179 3539 2.477845 TAAGTAACGACCCAAAGGCC 57.522 50.000 0.00 0.00 36.11 5.19
2504 3872 9.865321 CAATTGATGAATGGACAACTAGATTTT 57.135 29.630 0.00 0.00 0.00 1.82
2608 3976 5.106157 GGTCTTTGTGGAGTGAATACATTGG 60.106 44.000 0.00 0.00 0.00 3.16
2859 4251 2.357009 CTCATGAGGAAAAATGGGAGCG 59.643 50.000 15.38 0.00 0.00 5.03
3158 4550 5.097529 CACATGGATAACAATTGTGCTGAC 58.902 41.667 12.82 2.93 32.24 3.51
3439 4834 1.311651 TGGTTGCATGCGTGTATGGG 61.312 55.000 14.09 0.00 0.00 4.00
3444 4839 1.134250 TGCATGCGTGTATGGGTACAT 60.134 47.619 14.09 0.00 42.43 2.29
3600 4995 9.071276 CCACTTTGGCATTTTGATCTATATACT 57.929 33.333 0.00 0.00 0.00 2.12
3840 5317 4.810191 AGTAGGTTGACTGGAATCACTC 57.190 45.455 0.00 0.00 0.00 3.51
4151 5630 6.780901 AGAGATAATCATCTGCCACATCAAT 58.219 36.000 0.00 0.00 41.78 2.57
4288 5767 8.117813 TGTATATTATAGTGACTGATTCGCCA 57.882 34.615 0.00 0.00 35.03 5.69
4581 6060 2.992593 AGTTGCTTAGCCTAAAGGAGC 58.007 47.619 0.29 0.66 37.39 4.70
4678 6157 2.757868 CTCCAATCTCGACTTCAGAGGT 59.242 50.000 0.00 0.00 36.45 3.85
4704 6183 6.829298 TGTCAGACGAGAGGAATAGTTATCTT 59.171 38.462 0.00 0.00 0.00 2.40
4761 6240 9.695526 TTTGTTTGATGGTATTTTCTTCATCTG 57.304 29.630 0.00 0.00 37.48 2.90
4837 6316 7.644157 GTCTTCAGTTGTTTGTCCTTTAATGAC 59.356 37.037 0.00 0.00 0.00 3.06
5115 6600 5.066593 AGTGAACAGGAAAAGGAGATGAAC 58.933 41.667 0.00 0.00 0.00 3.18
5320 6806 9.483489 TCTTTTATGGGTACTACTCAATCTGTA 57.517 33.333 0.00 0.00 28.99 2.74
5562 7055 7.485595 GTCTTTTAGCACTGCTAGAAGTAGTAC 59.514 40.741 27.96 19.81 46.53 2.73
5958 7454 8.693542 AGCAAGAAATGACATTGTAAATAAGC 57.306 30.769 0.34 0.00 0.00 3.09
6099 7609 6.486657 ACATTAGCTTACAGAGACAGCAAAAA 59.513 34.615 0.00 0.00 35.88 1.94
6101 7611 4.199310 AGCTTACAGAGACAGCAAAAACA 58.801 39.130 0.00 0.00 35.88 2.83
6102 7612 4.823989 AGCTTACAGAGACAGCAAAAACAT 59.176 37.500 0.00 0.00 35.88 2.71
6336 8011 7.776107 TGTTATTTCAGTGTGATGTTTGGAAA 58.224 30.769 0.00 0.00 0.00 3.13
6743 8419 3.368571 GGTGCAAGCTCAGTGGGC 61.369 66.667 6.98 6.98 0.00 5.36
7102 8788 3.017442 AGTCGCTTAGTCTGAGCACATA 58.983 45.455 16.13 0.00 40.13 2.29
7106 8792 4.041049 CGCTTAGTCTGAGCACATAGAAG 58.959 47.826 16.13 0.00 40.13 2.85
7116 8802 5.304778 TGAGCACATAGAAGCTTTACACAA 58.695 37.500 0.00 0.00 42.04 3.33
7124 8810 8.094548 ACATAGAAGCTTTACACAATGTACTCA 58.905 33.333 0.00 0.00 31.69 3.41
7130 8816 2.526304 ACACAATGTACTCAGTGCGT 57.474 45.000 10.60 0.00 42.43 5.24
7185 8871 6.827727 AGTTCTAGCTTTGTCCTAACTCAAA 58.172 36.000 0.00 0.00 33.44 2.69
7194 8880 6.937436 TTGTCCTAACTCAAAACTCCTTTC 57.063 37.500 0.00 0.00 0.00 2.62
7310 8996 6.246540 GCGAATTGAAAACAGAACGAGTAATC 59.753 38.462 0.00 0.00 0.00 1.75
7312 8998 7.475565 CGAATTGAAAACAGAACGAGTAATCTG 59.524 37.037 0.00 1.46 46.69 2.90
7318 9004 9.319223 GAAAACAGAACGAGTAATCTGAAATTC 57.681 33.333 9.56 6.89 44.64 2.17
7319 9005 8.608844 AAACAGAACGAGTAATCTGAAATTCT 57.391 30.769 9.56 0.00 44.64 2.40
7330 9016 0.999712 TGAAATTCTGGGGAGGGGAC 59.000 55.000 0.00 0.00 0.00 4.46
7377 9063 2.513666 CACGGGCTGTGTGTGTGT 60.514 61.111 18.40 0.00 43.88 3.72
7378 9064 2.513666 ACGGGCTGTGTGTGTGTG 60.514 61.111 0.00 0.00 0.00 3.82
7379 9065 2.513666 CGGGCTGTGTGTGTGTGT 60.514 61.111 0.00 0.00 0.00 3.72
7380 9066 2.534019 CGGGCTGTGTGTGTGTGTC 61.534 63.158 0.00 0.00 0.00 3.67
7431 9306 9.453325 TTTACAAATTGTAAAGGCTTTTAGACG 57.547 29.630 22.86 4.16 44.93 4.18
7432 9307 7.034685 ACAAATTGTAAAGGCTTTTAGACGT 57.965 32.000 18.93 4.77 29.71 4.34
7433 9308 6.915843 ACAAATTGTAAAGGCTTTTAGACGTG 59.084 34.615 18.93 12.20 29.71 4.49
7434 9309 5.622770 ATTGTAAAGGCTTTTAGACGTGG 57.377 39.130 18.93 0.00 29.71 4.94
7435 9310 4.075963 TGTAAAGGCTTTTAGACGTGGT 57.924 40.909 18.93 0.00 29.71 4.16
7436 9311 3.810941 TGTAAAGGCTTTTAGACGTGGTG 59.189 43.478 18.93 0.00 29.71 4.17
7437 9312 2.632987 AAGGCTTTTAGACGTGGTGT 57.367 45.000 0.00 0.00 0.00 4.16
7438 9313 2.632987 AGGCTTTTAGACGTGGTGTT 57.367 45.000 0.00 0.00 0.00 3.32
7439 9314 2.927028 AGGCTTTTAGACGTGGTGTTT 58.073 42.857 0.00 0.00 0.00 2.83
7440 9315 4.075963 AGGCTTTTAGACGTGGTGTTTA 57.924 40.909 0.00 0.00 0.00 2.01
7441 9316 4.062991 AGGCTTTTAGACGTGGTGTTTAG 58.937 43.478 0.00 0.00 0.00 1.85
7442 9317 3.187842 GGCTTTTAGACGTGGTGTTTAGG 59.812 47.826 0.00 0.00 0.00 2.69
7443 9318 3.364664 GCTTTTAGACGTGGTGTTTAGGC 60.365 47.826 0.00 0.00 0.00 3.93
7444 9319 3.756933 TTTAGACGTGGTGTTTAGGCT 57.243 42.857 0.00 0.00 0.00 4.58
7445 9320 3.308438 TTAGACGTGGTGTTTAGGCTC 57.692 47.619 0.00 0.00 0.00 4.70
7446 9321 0.320697 AGACGTGGTGTTTAGGCTCC 59.679 55.000 0.00 0.00 0.00 4.70
7447 9322 0.320697 GACGTGGTGTTTAGGCTCCT 59.679 55.000 0.00 0.00 0.00 3.69
7448 9323 1.547372 GACGTGGTGTTTAGGCTCCTA 59.453 52.381 0.00 0.00 0.00 2.94
7449 9324 1.549170 ACGTGGTGTTTAGGCTCCTAG 59.451 52.381 0.00 0.00 0.00 3.02
7450 9325 1.134788 CGTGGTGTTTAGGCTCCTAGG 60.135 57.143 0.82 0.82 0.00 3.02
7451 9326 1.907255 GTGGTGTTTAGGCTCCTAGGT 59.093 52.381 9.08 0.00 0.00 3.08
7452 9327 1.906574 TGGTGTTTAGGCTCCTAGGTG 59.093 52.381 9.08 7.68 0.00 4.00
7453 9328 1.407025 GGTGTTTAGGCTCCTAGGTGC 60.407 57.143 24.68 24.68 0.00 5.01
7454 9329 1.278127 GTGTTTAGGCTCCTAGGTGCA 59.722 52.381 31.19 13.86 36.47 4.57
7455 9330 2.092914 GTGTTTAGGCTCCTAGGTGCAT 60.093 50.000 31.19 27.95 36.47 3.96
7456 9331 3.134081 GTGTTTAGGCTCCTAGGTGCATA 59.866 47.826 31.19 26.97 36.47 3.14
7457 9332 3.973973 TGTTTAGGCTCCTAGGTGCATAT 59.026 43.478 31.19 20.55 36.47 1.78
7458 9333 4.202357 TGTTTAGGCTCCTAGGTGCATATG 60.202 45.833 31.19 0.00 36.47 1.78
7459 9334 0.689623 AGGCTCCTAGGTGCATATGC 59.310 55.000 31.19 21.09 42.50 3.14
7477 9352 1.574134 GCATCCATTGCCAATTTCCG 58.426 50.000 0.00 0.00 46.15 4.30
7478 9353 1.574134 CATCCATTGCCAATTTCCGC 58.426 50.000 0.00 0.00 0.00 5.54
7479 9354 1.137479 CATCCATTGCCAATTTCCGCT 59.863 47.619 0.00 0.00 0.00 5.52
7480 9355 1.265236 TCCATTGCCAATTTCCGCTT 58.735 45.000 0.00 0.00 0.00 4.68
7481 9356 1.622811 TCCATTGCCAATTTCCGCTTT 59.377 42.857 0.00 0.00 0.00 3.51
7482 9357 2.038295 TCCATTGCCAATTTCCGCTTTT 59.962 40.909 0.00 0.00 0.00 2.27
7483 9358 3.259374 TCCATTGCCAATTTCCGCTTTTA 59.741 39.130 0.00 0.00 0.00 1.52
7484 9359 3.618150 CCATTGCCAATTTCCGCTTTTAG 59.382 43.478 0.00 0.00 0.00 1.85
7485 9360 4.244862 CATTGCCAATTTCCGCTTTTAGT 58.755 39.130 0.00 0.00 0.00 2.24
7486 9361 3.569250 TGCCAATTTCCGCTTTTAGTC 57.431 42.857 0.00 0.00 0.00 2.59
7487 9362 2.095466 TGCCAATTTCCGCTTTTAGTCG 60.095 45.455 0.00 0.00 0.00 4.18
7488 9363 2.515912 CCAATTTCCGCTTTTAGTCGC 58.484 47.619 0.00 0.00 0.00 5.19
7493 9368 3.545911 CGCTTTTAGTCGCGGTGT 58.454 55.556 6.13 0.00 45.17 4.16
7494 9369 1.857364 CGCTTTTAGTCGCGGTGTT 59.143 52.632 6.13 0.00 45.17 3.32
7495 9370 0.233848 CGCTTTTAGTCGCGGTGTTT 59.766 50.000 6.13 0.00 45.17 2.83
7496 9371 1.333435 CGCTTTTAGTCGCGGTGTTTT 60.333 47.619 6.13 0.00 45.17 2.43
7497 9372 2.041244 GCTTTTAGTCGCGGTGTTTTG 58.959 47.619 6.13 0.00 0.00 2.44
7498 9373 2.646250 CTTTTAGTCGCGGTGTTTTGG 58.354 47.619 6.13 0.00 0.00 3.28
7499 9374 0.308376 TTTAGTCGCGGTGTTTTGGC 59.692 50.000 6.13 0.00 0.00 4.52
7500 9375 0.533308 TTAGTCGCGGTGTTTTGGCT 60.533 50.000 6.13 0.00 0.00 4.75
7501 9376 0.947180 TAGTCGCGGTGTTTTGGCTC 60.947 55.000 6.13 0.00 0.00 4.70
7502 9377 2.975799 TCGCGGTGTTTTGGCTCC 60.976 61.111 6.13 0.00 0.00 4.70
7503 9378 2.978010 CGCGGTGTTTTGGCTCCT 60.978 61.111 0.00 0.00 0.00 3.69
7504 9379 1.669760 CGCGGTGTTTTGGCTCCTA 60.670 57.895 0.00 0.00 0.00 2.94
7505 9380 1.635663 CGCGGTGTTTTGGCTCCTAG 61.636 60.000 0.00 0.00 0.00 3.02
7506 9381 1.305930 GCGGTGTTTTGGCTCCTAGG 61.306 60.000 0.82 0.82 0.00 3.02
7507 9382 0.036306 CGGTGTTTTGGCTCCTAGGT 59.964 55.000 9.08 0.00 0.00 3.08
7508 9383 1.534729 GGTGTTTTGGCTCCTAGGTG 58.465 55.000 9.08 7.68 0.00 4.00
7509 9384 0.881796 GTGTTTTGGCTCCTAGGTGC 59.118 55.000 24.68 24.68 0.00 5.01
7510 9385 0.476338 TGTTTTGGCTCCTAGGTGCA 59.524 50.000 31.19 17.76 36.47 4.57
7511 9386 1.075374 TGTTTTGGCTCCTAGGTGCAT 59.925 47.619 31.19 0.00 36.47 3.96
7512 9387 2.307392 TGTTTTGGCTCCTAGGTGCATA 59.693 45.455 31.19 19.50 36.47 3.14
7513 9388 3.053693 TGTTTTGGCTCCTAGGTGCATAT 60.054 43.478 31.19 0.00 36.47 1.78
7514 9389 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
7515 9390 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
7529 9404 4.916983 GCATATGCACCCATTGTCTAAA 57.083 40.909 22.84 0.00 41.59 1.85
7530 9405 5.458041 GCATATGCACCCATTGTCTAAAT 57.542 39.130 22.84 0.00 41.59 1.40
7531 9406 6.573664 GCATATGCACCCATTGTCTAAATA 57.426 37.500 22.84 0.00 41.59 1.40
7532 9407 6.980593 GCATATGCACCCATTGTCTAAATAA 58.019 36.000 22.84 0.00 41.59 1.40
7533 9408 7.432869 GCATATGCACCCATTGTCTAAATAAA 58.567 34.615 22.84 0.00 41.59 1.40
7534 9409 7.925483 GCATATGCACCCATTGTCTAAATAAAA 59.075 33.333 22.84 0.00 41.59 1.52
7535 9410 9.814899 CATATGCACCCATTGTCTAAATAAAAA 57.185 29.630 0.00 0.00 32.85 1.94
7537 9412 7.296628 TGCACCCATTGTCTAAATAAAAAGT 57.703 32.000 0.00 0.00 0.00 2.66
7538 9413 7.731054 TGCACCCATTGTCTAAATAAAAAGTT 58.269 30.769 0.00 0.00 0.00 2.66
7539 9414 8.861086 TGCACCCATTGTCTAAATAAAAAGTTA 58.139 29.630 0.00 0.00 0.00 2.24
7540 9415 9.699703 GCACCCATTGTCTAAATAAAAAGTTAA 57.300 29.630 0.00 0.00 0.00 2.01
7562 9437 3.586100 AAATCCGGAACAAAAATCCCG 57.414 42.857 9.01 0.00 41.47 5.14
7563 9438 0.815095 ATCCGGAACAAAAATCCCGC 59.185 50.000 9.01 0.00 40.56 6.13
7564 9439 1.154112 CCGGAACAAAAATCCCGCG 60.154 57.895 0.00 0.00 40.56 6.46
7565 9440 1.154112 CGGAACAAAAATCCCGCGG 60.154 57.895 21.04 21.04 35.29 6.46
7566 9441 1.214325 GGAACAAAAATCCCGCGGG 59.786 57.895 39.13 39.13 0.00 6.13
7567 9442 1.529152 GGAACAAAAATCCCGCGGGT 61.529 55.000 41.57 26.88 36.47 5.28
7568 9443 1.166989 GAACAAAAATCCCGCGGGTA 58.833 50.000 41.57 28.68 36.47 3.69
7569 9444 1.746787 GAACAAAAATCCCGCGGGTAT 59.253 47.619 41.57 29.53 36.47 2.73
7570 9445 2.713863 ACAAAAATCCCGCGGGTATA 57.286 45.000 41.57 25.51 36.47 1.47
7571 9446 3.217681 ACAAAAATCCCGCGGGTATAT 57.782 42.857 41.57 26.64 36.47 0.86
7572 9447 3.143728 ACAAAAATCCCGCGGGTATATC 58.856 45.455 41.57 0.00 36.47 1.63
7573 9448 3.181448 ACAAAAATCCCGCGGGTATATCT 60.181 43.478 41.57 21.06 36.47 1.98
7574 9449 2.762535 AAATCCCGCGGGTATATCTG 57.237 50.000 41.57 15.89 36.47 2.90
7575 9450 0.902531 AATCCCGCGGGTATATCTGG 59.097 55.000 41.57 15.10 36.47 3.86
7576 9451 0.040646 ATCCCGCGGGTATATCTGGA 59.959 55.000 41.57 21.44 36.47 3.86
7577 9452 0.896940 TCCCGCGGGTATATCTGGAC 60.897 60.000 41.57 0.00 36.47 4.02
7578 9453 1.183030 CCCGCGGGTATATCTGGACA 61.183 60.000 36.64 0.00 0.00 4.02
7579 9454 0.895530 CCGCGGGTATATCTGGACAT 59.104 55.000 20.10 0.00 0.00 3.06
7580 9455 1.275291 CCGCGGGTATATCTGGACATT 59.725 52.381 20.10 0.00 0.00 2.71
7581 9456 2.607187 CGCGGGTATATCTGGACATTC 58.393 52.381 0.00 0.00 0.00 2.67
7582 9457 2.231478 CGCGGGTATATCTGGACATTCT 59.769 50.000 0.00 0.00 0.00 2.40
7583 9458 3.306088 CGCGGGTATATCTGGACATTCTT 60.306 47.826 0.00 0.00 0.00 2.52
7584 9459 4.246458 GCGGGTATATCTGGACATTCTTC 58.754 47.826 0.00 0.00 0.00 2.87
7585 9460 4.486090 CGGGTATATCTGGACATTCTTCG 58.514 47.826 0.00 0.00 0.00 3.79
7586 9461 4.022242 CGGGTATATCTGGACATTCTTCGT 60.022 45.833 0.00 0.00 0.00 3.85
7587 9462 5.230942 GGGTATATCTGGACATTCTTCGTG 58.769 45.833 0.00 0.00 0.00 4.35
7588 9463 4.686554 GGTATATCTGGACATTCTTCGTGC 59.313 45.833 0.00 0.00 0.00 5.34
7589 9464 2.768253 ATCTGGACATTCTTCGTGCA 57.232 45.000 0.00 0.00 33.37 4.57
7590 9465 2.768253 TCTGGACATTCTTCGTGCAT 57.232 45.000 0.00 0.00 34.00 3.96
7591 9466 2.349590 TCTGGACATTCTTCGTGCATG 58.650 47.619 0.00 0.00 34.00 4.06
7592 9467 0.804364 TGGACATTCTTCGTGCATGC 59.196 50.000 11.82 11.82 28.92 4.06
7593 9468 0.804364 GGACATTCTTCGTGCATGCA 59.196 50.000 18.46 18.46 0.00 3.96
7594 9469 1.466360 GGACATTCTTCGTGCATGCAC 60.466 52.381 35.76 35.76 43.01 4.57
7595 9470 1.197492 GACATTCTTCGTGCATGCACA 59.803 47.619 40.95 28.39 46.47 4.57
7596 9471 1.608109 ACATTCTTCGTGCATGCACAA 59.392 42.857 40.95 31.81 46.47 3.33
7597 9472 2.034432 ACATTCTTCGTGCATGCACAAA 59.966 40.909 40.95 32.31 46.47 2.83
7598 9473 2.404265 TTCTTCGTGCATGCACAAAG 57.596 45.000 40.95 38.10 46.47 2.77
7599 9474 1.308047 TCTTCGTGCATGCACAAAGT 58.692 45.000 37.41 0.00 46.47 2.66
7600 9475 1.675483 TCTTCGTGCATGCACAAAGTT 59.325 42.857 37.41 0.00 46.47 2.66
7601 9476 2.098934 TCTTCGTGCATGCACAAAGTTT 59.901 40.909 37.41 0.00 46.47 2.66
7602 9477 2.118228 TCGTGCATGCACAAAGTTTC 57.882 45.000 40.95 19.01 46.47 2.78
7603 9478 0.771756 CGTGCATGCACAAAGTTTCG 59.228 50.000 40.95 25.63 46.47 3.46
7604 9479 1.130955 GTGCATGCACAAAGTTTCGG 58.869 50.000 39.12 0.00 45.53 4.30
7605 9480 0.743688 TGCATGCACAAAGTTTCGGT 59.256 45.000 18.46 0.00 0.00 4.69
7606 9481 1.130955 GCATGCACAAAGTTTCGGTG 58.869 50.000 14.21 2.48 35.68 4.94
7607 9482 1.268999 GCATGCACAAAGTTTCGGTGA 60.269 47.619 14.21 0.00 34.52 4.02
7608 9483 2.797792 GCATGCACAAAGTTTCGGTGAA 60.798 45.455 14.21 0.49 34.52 3.18
7609 9484 3.443037 CATGCACAAAGTTTCGGTGAAA 58.557 40.909 9.60 0.00 34.52 2.69
7610 9485 3.791973 TGCACAAAGTTTCGGTGAAAT 57.208 38.095 9.60 0.00 33.97 2.17
7611 9486 4.902443 TGCACAAAGTTTCGGTGAAATA 57.098 36.364 9.60 0.00 33.97 1.40
7612 9487 4.602995 TGCACAAAGTTTCGGTGAAATAC 58.397 39.130 9.60 0.00 33.97 1.89
7613 9488 3.662186 GCACAAAGTTTCGGTGAAATACG 59.338 43.478 9.60 0.00 33.97 3.06
7614 9489 4.553156 GCACAAAGTTTCGGTGAAATACGA 60.553 41.667 9.60 0.00 33.97 3.43
7615 9490 4.901881 CACAAAGTTTCGGTGAAATACGAC 59.098 41.667 0.82 0.00 39.04 4.34
7616 9491 4.138817 CAAAGTTTCGGTGAAATACGACG 58.861 43.478 0.00 0.00 39.04 5.12
7617 9492 3.017265 AGTTTCGGTGAAATACGACGT 57.983 42.857 5.52 5.52 39.04 4.34
7618 9493 3.383761 AGTTTCGGTGAAATACGACGTT 58.616 40.909 5.50 0.00 39.04 3.99
7619 9494 3.803778 AGTTTCGGTGAAATACGACGTTT 59.196 39.130 5.50 0.00 39.04 3.60
7620 9495 4.270808 AGTTTCGGTGAAATACGACGTTTT 59.729 37.500 5.50 0.85 39.04 2.43
7621 9496 4.792528 TTCGGTGAAATACGACGTTTTT 57.207 36.364 14.90 14.90 39.04 1.94
7686 9561 9.643693 AATTGTAATGAACCATCAGAAATTGTC 57.356 29.630 0.00 0.00 39.39 3.18
7687 9562 7.156876 TGTAATGAACCATCAGAAATTGTCC 57.843 36.000 0.00 0.00 39.39 4.02
7688 9563 6.947733 TGTAATGAACCATCAGAAATTGTCCT 59.052 34.615 0.00 0.00 39.39 3.85
7689 9564 6.923199 AATGAACCATCAGAAATTGTCCTT 57.077 33.333 0.00 0.00 39.39 3.36
7690 9565 6.923199 ATGAACCATCAGAAATTGTCCTTT 57.077 33.333 0.00 0.00 39.39 3.11
7691 9566 6.729690 TGAACCATCAGAAATTGTCCTTTT 57.270 33.333 0.00 0.00 0.00 2.27
7692 9567 7.123355 TGAACCATCAGAAATTGTCCTTTTT 57.877 32.000 0.00 0.00 0.00 1.94
7739 9614 4.999751 TTTCACCAAAAACTTTGTGCAC 57.000 36.364 10.75 10.75 0.00 4.57
7740 9615 3.667497 TCACCAAAAACTTTGTGCACA 57.333 38.095 17.42 17.42 0.00 4.57
7741 9616 3.321497 TCACCAAAAACTTTGTGCACAC 58.679 40.909 21.56 0.00 0.00 3.82
7742 9617 3.062763 CACCAAAAACTTTGTGCACACA 58.937 40.909 21.56 13.06 39.98 3.72
7743 9618 9.519317 TTTTCACCAAAAACTTTGTGCACACAC 62.519 37.037 21.56 0.00 38.34 3.82
7768 9643 1.126079 GTGTTCGGATATACACGCGG 58.874 55.000 12.47 1.27 35.77 6.46
7769 9644 0.031043 TGTTCGGATATACACGCGGG 59.969 55.000 6.92 6.92 0.00 6.13
7770 9645 0.665369 GTTCGGATATACACGCGGGG 60.665 60.000 15.46 5.78 0.00 5.73
7771 9646 1.108727 TTCGGATATACACGCGGGGT 61.109 55.000 15.46 12.52 0.00 4.95
7772 9647 1.108727 TCGGATATACACGCGGGGTT 61.109 55.000 15.46 0.91 0.00 4.11
7773 9648 0.249573 CGGATATACACGCGGGGTTT 60.250 55.000 15.46 7.35 0.00 3.27
7774 9649 1.807377 CGGATATACACGCGGGGTTTT 60.807 52.381 15.46 3.58 0.00 2.43
7775 9650 2.291365 GGATATACACGCGGGGTTTTT 58.709 47.619 15.46 0.00 0.00 1.94
7776 9651 2.032426 GGATATACACGCGGGGTTTTTG 59.968 50.000 15.46 0.12 0.00 2.44
7777 9652 2.181954 TATACACGCGGGGTTTTTGT 57.818 45.000 15.46 7.48 0.00 2.83
7778 9653 1.320507 ATACACGCGGGGTTTTTGTT 58.679 45.000 15.46 0.00 0.00 2.83
7779 9654 0.662085 TACACGCGGGGTTTTTGTTC 59.338 50.000 15.46 0.00 0.00 3.18
7780 9655 1.299544 CACGCGGGGTTTTTGTTCC 60.300 57.895 12.47 0.00 0.00 3.62
7781 9656 2.050805 CGCGGGGTTTTTGTTCCG 60.051 61.111 0.00 0.00 44.70 4.30
7782 9657 2.544698 CGCGGGGTTTTTGTTCCGA 61.545 57.895 0.00 0.00 44.69 4.55
7783 9658 1.734748 GCGGGGTTTTTGTTCCGAA 59.265 52.632 4.71 0.00 44.69 4.30
7784 9659 0.315886 GCGGGGTTTTTGTTCCGAAT 59.684 50.000 4.71 0.00 44.69 3.34
7785 9660 1.269883 GCGGGGTTTTTGTTCCGAATT 60.270 47.619 4.71 0.00 44.69 2.17
7786 9661 2.803852 GCGGGGTTTTTGTTCCGAATTT 60.804 45.455 4.71 0.00 44.69 1.82
7787 9662 3.459145 CGGGGTTTTTGTTCCGAATTTT 58.541 40.909 0.00 0.00 44.69 1.82
7788 9663 3.872182 CGGGGTTTTTGTTCCGAATTTTT 59.128 39.130 0.00 0.00 44.69 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 2.860062 CCACGAAGGAAGTAGTACGTG 58.140 52.381 0.00 0.00 46.43 4.49
93 95 4.397417 TCTTAGCCACGAAGGAAGTAGTAC 59.603 45.833 2.86 0.00 41.22 2.73
94 96 4.397417 GTCTTAGCCACGAAGGAAGTAGTA 59.603 45.833 2.86 0.00 41.22 1.82
95 97 3.193056 GTCTTAGCCACGAAGGAAGTAGT 59.807 47.826 2.86 0.00 41.22 2.73
245 256 3.877559 CCACATACTGAAATGGAGCTCA 58.122 45.455 17.19 1.87 33.80 4.26
267 286 5.313623 ACGATTTCAAAACTAATCGAAGCG 58.686 37.500 20.03 1.80 45.04 4.68
272 291 7.295201 TCAAAGGACGATTTCAAAACTAATCG 58.705 34.615 13.70 13.70 46.85 3.34
277 296 7.075741 CGTTATCAAAGGACGATTTCAAAACT 58.924 34.615 0.00 0.00 38.99 2.66
281 300 4.452795 TGCGTTATCAAAGGACGATTTCAA 59.547 37.500 0.00 0.00 38.99 2.69
302 546 0.179129 CTGAATTGGACCGCCATTGC 60.179 55.000 0.00 0.00 45.46 3.56
353 597 3.433306 AGTACATGGCAAGTAAAGGCA 57.567 42.857 3.88 0.00 45.98 4.75
354 598 4.783764 AAAGTACATGGCAAGTAAAGGC 57.216 40.909 3.88 0.00 0.00 4.35
407 657 5.467035 TTGCCCCAATTGACTTAGAAAAG 57.533 39.130 7.12 0.00 38.77 2.27
484 736 9.095065 CAACTAAAGTTAGCACGGTATATTTCT 57.905 33.333 0.00 0.00 36.32 2.52
487 739 7.493645 GGTCAACTAAAGTTAGCACGGTATATT 59.506 37.037 0.00 0.00 36.32 1.28
494 1826 3.432252 CCTGGTCAACTAAAGTTAGCACG 59.568 47.826 0.00 0.00 36.32 5.34
589 1921 6.201517 CGTTTGTTCACTCATTTCAATCTGT 58.798 36.000 0.00 0.00 0.00 3.41
594 1926 4.362932 TGCGTTTGTTCACTCATTTCAA 57.637 36.364 0.00 0.00 0.00 2.69
613 1945 9.655769 CAGATGTACATAGACATGTTTTAATGC 57.344 33.333 8.71 0.00 42.98 3.56
622 1954 9.485206 TTCATGAATCAGATGTACATAGACATG 57.515 33.333 21.10 21.10 40.18 3.21
624 1956 9.889128 TTTTCATGAATCAGATGTACATAGACA 57.111 29.630 8.71 6.04 0.00 3.41
672 2009 6.017400 TCATAATATACTCCGTCCGTTTCC 57.983 41.667 0.00 0.00 0.00 3.13
673 2010 7.935338 TTTCATAATATACTCCGTCCGTTTC 57.065 36.000 0.00 0.00 0.00 2.78
681 2018 7.819415 TGCATCCTCTTTTCATAATATACTCCG 59.181 37.037 0.00 0.00 0.00 4.63
693 2032 2.291153 CCCTCCTTGCATCCTCTTTTCA 60.291 50.000 0.00 0.00 0.00 2.69
705 2044 0.251073 TACGTTTAGGCCCTCCTTGC 59.749 55.000 0.00 0.00 40.66 4.01
769 2108 1.227946 GACTAGAGAGACCCGCCCT 59.772 63.158 0.00 0.00 0.00 5.19
771 2110 1.161563 CGAGACTAGAGAGACCCGCC 61.162 65.000 0.00 0.00 0.00 6.13
784 2123 0.250553 CCGAGATAGAGGCCGAGACT 60.251 60.000 0.00 0.00 0.00 3.24
785 2124 1.238625 CCCGAGATAGAGGCCGAGAC 61.239 65.000 0.00 0.00 0.00 3.36
786 2125 1.073373 CCCGAGATAGAGGCCGAGA 59.927 63.158 0.00 0.00 0.00 4.04
787 2126 1.228306 ACCCGAGATAGAGGCCGAG 60.228 63.158 0.00 0.00 0.00 4.63
788 2127 1.528542 CACCCGAGATAGAGGCCGA 60.529 63.158 0.00 0.00 0.00 5.54
800 2139 4.704103 AGAGGAGGCTGCACCCGA 62.704 66.667 9.23 0.00 40.58 5.14
822 2161 1.416401 AGTTGGAGTGAAGAAGGCGAA 59.584 47.619 0.00 0.00 0.00 4.70
859 2198 2.376842 GGGATTGGAGGGGAGGGA 59.623 66.667 0.00 0.00 0.00 4.20
944 2283 0.836400 AAGAAGCAGAGGAACCCGGA 60.836 55.000 0.73 0.00 0.00 5.14
962 2301 1.209504 CAAGGAACCAGGATCGGCTAA 59.790 52.381 0.00 0.00 0.00 3.09
1047 2386 4.280494 CGGATCGGGCGTACCTGG 62.280 72.222 0.00 0.00 43.29 4.45
1072 2411 1.144057 CAGTACCCCCATGCGAGAC 59.856 63.158 0.00 0.00 0.00 3.36
1086 2425 1.204704 CTCATCCGAGCAACACCAGTA 59.795 52.381 0.00 0.00 31.00 2.74
1087 2426 0.036952 CTCATCCGAGCAACACCAGT 60.037 55.000 0.00 0.00 31.00 4.00
1088 2427 0.742281 CCTCATCCGAGCAACACCAG 60.742 60.000 0.00 0.00 38.00 4.00
1145 2488 0.893270 CAATGACCCAAACCCTCGCA 60.893 55.000 0.00 0.00 0.00 5.10
1160 2503 2.159254 CCGGCAGGTGAAATTACCAATG 60.159 50.000 0.00 0.00 43.37 2.82
1171 2514 1.415672 AAGTTTCCTCCGGCAGGTGA 61.416 55.000 16.53 0.23 43.95 4.02
1179 2526 4.154195 CCAATCTGTAACAAGTTTCCTCCG 59.846 45.833 0.00 0.00 0.00 4.63
1226 2574 4.458397 CCTCACGGTAGAATCCTAGTACA 58.542 47.826 0.00 0.00 0.00 2.90
1227 2575 3.252944 GCCTCACGGTAGAATCCTAGTAC 59.747 52.174 0.00 0.00 0.00 2.73
1228 2576 3.484407 GCCTCACGGTAGAATCCTAGTA 58.516 50.000 0.00 0.00 0.00 1.82
1272 2625 5.990668 AGAAATAATCCTAGTTCCGCAAGT 58.009 37.500 0.00 0.00 33.51 3.16
1274 2627 7.356089 TCTAGAAATAATCCTAGTTCCGCAA 57.644 36.000 0.00 0.00 33.51 4.85
1312 2668 7.093727 ACAAGAATAATCGAACTCTTCCAGAGA 60.094 37.037 7.79 0.00 45.07 3.10
1318 2674 7.224949 CCCCTAACAAGAATAATCGAACTCTTC 59.775 40.741 0.00 0.00 0.00 2.87
1368 2724 1.202065 CGAACACTGAATGGCGGATTG 60.202 52.381 0.00 0.00 0.00 2.67
1387 2743 1.063006 CGCAGCCATGGACAAATCG 59.937 57.895 18.40 5.42 0.00 3.34
1408 2764 2.024414 ACAAAAGGTGTCACTGCTTCC 58.976 47.619 2.35 0.00 34.38 3.46
1509 2865 0.684535 TGACTTCATCAAGGACGGCA 59.315 50.000 0.00 0.00 33.02 5.69
1551 2907 1.198713 GATGGAGGCTGGAGACTTCA 58.801 55.000 0.00 0.00 44.25 3.02
1612 2968 1.083806 GGTGCATCGTGATTCGCAGA 61.084 55.000 0.00 0.00 39.67 4.26
1616 2972 1.358877 TTCAGGTGCATCGTGATTCG 58.641 50.000 10.85 0.00 40.03 3.34
1631 2987 4.070716 AGCAGATGAACTTCCTGTTTCAG 58.929 43.478 0.00 0.00 39.30 3.02
1676 3035 3.409570 CTCCAGCATACAAGGATCCATG 58.590 50.000 15.82 15.59 0.00 3.66
1677 3036 2.374504 CCTCCAGCATACAAGGATCCAT 59.625 50.000 15.82 0.00 0.00 3.41
1679 3038 1.544314 GCCTCCAGCATACAAGGATCC 60.544 57.143 2.48 2.48 42.97 3.36
1715 3074 6.877611 ACCGTGAAATCAACATCTTTAAGT 57.122 33.333 0.00 0.00 0.00 2.24
1717 3076 6.039941 ACCAACCGTGAAATCAACATCTTTAA 59.960 34.615 0.00 0.00 0.00 1.52
2100 3460 4.161565 TGGCAGTACTATGTTTCTACCCAG 59.838 45.833 0.00 0.00 0.00 4.45
2179 3539 7.730364 AGAATAAGAAAGCCCATATAACACG 57.270 36.000 0.00 0.00 0.00 4.49
2402 3770 4.735985 TGATTGCAGAATCAACATTTCCG 58.264 39.130 0.00 0.00 44.11 4.30
2504 3872 0.397941 CAGGCACAGAACAGGAAGGA 59.602 55.000 0.00 0.00 0.00 3.36
2573 3941 2.482721 CCACAAAGACCGACCATTACAC 59.517 50.000 0.00 0.00 0.00 2.90
2608 3976 2.879103 TTTCCCCAGGAGTGATTCAC 57.121 50.000 8.82 8.82 31.21 3.18
2859 4251 5.508224 GTGCAACGTTAAGATTTATGCTGTC 59.492 40.000 0.00 0.00 33.66 3.51
2876 4268 0.040958 GCTCTTGGACTTGTGCAACG 60.041 55.000 3.63 1.94 42.39 4.10
3439 4834 3.126858 CACATAACCACAGGCACATGTAC 59.873 47.826 0.00 0.00 0.00 2.90
3444 4839 0.767998 TCCACATAACCACAGGCACA 59.232 50.000 0.00 0.00 0.00 4.57
3598 4993 9.618890 AGTGCATGAAACATAATCTATTGTAGT 57.381 29.630 0.00 0.00 0.00 2.73
3599 4994 9.874215 CAGTGCATGAAACATAATCTATTGTAG 57.126 33.333 0.00 0.00 0.00 2.74
3600 4995 9.612066 TCAGTGCATGAAACATAATCTATTGTA 57.388 29.630 0.00 0.00 34.02 2.41
3601 4996 8.510243 TCAGTGCATGAAACATAATCTATTGT 57.490 30.769 0.00 0.00 34.02 2.71
3776 5253 4.307432 GACTACAACAAGTCAGCTAGCAA 58.693 43.478 18.83 0.90 44.41 3.91
3840 5317 3.937706 GAGAATCACTGACAATGACCCAG 59.062 47.826 0.00 0.00 33.17 4.45
3906 5385 9.717892 GCAATAAGGCAGTTTATTTTCTACTAC 57.282 33.333 0.00 0.00 32.38 2.73
4024 5503 4.156477 AGCTCCTTAGACACTGAAAGAGT 58.844 43.478 0.00 0.00 41.67 3.24
4288 5767 4.718961 AGTGTCCAACTTCAGCAGTTATT 58.281 39.130 0.00 0.00 44.60 1.40
4678 6157 6.829298 AGATAACTATTCCTCTCGTCTGACAA 59.171 38.462 8.73 0.00 0.00 3.18
4761 6240 1.270518 TGTTCTGTCAGGAAGCTCAGC 60.271 52.381 0.00 0.00 0.00 4.26
5115 6600 7.655490 ACTTTCTTGATTCTTCAACAATGGAG 58.345 34.615 0.00 0.00 36.94 3.86
5436 6929 5.888982 ATCCCTCTGTTCCATATTACGTT 57.111 39.130 0.00 0.00 0.00 3.99
5439 6932 7.963532 TCAGTAATCCCTCTGTTCCATATTAC 58.036 38.462 0.00 0.00 33.89 1.89
5958 7454 4.993584 ACAGAAGTGCTACACAAGAATCAG 59.006 41.667 0.00 0.00 36.74 2.90
6336 8011 5.131642 TCCTTCAGATTAGATGCCTGAACAT 59.868 40.000 0.00 0.00 40.68 2.71
6393 8069 7.435192 CGTCTATAAACTGACACAGCATTATCA 59.565 37.037 11.07 0.00 34.37 2.15
6394 8070 7.096023 CCGTCTATAAACTGACACAGCATTATC 60.096 40.741 11.07 0.00 34.37 1.75
6395 8071 6.701841 CCGTCTATAAACTGACACAGCATTAT 59.298 38.462 0.00 0.00 34.37 1.28
6396 8072 6.040247 CCGTCTATAAACTGACACAGCATTA 58.960 40.000 0.00 0.00 34.37 1.90
6645 8321 0.106519 ACTGGCCTTGCAACTTCAGT 60.107 50.000 3.32 14.41 0.00 3.41
6743 8419 0.385223 GCTGCTTGCTGTTGTCTTCG 60.385 55.000 0.00 0.00 38.95 3.79
6970 8647 9.412460 TCAGCACCATTTTATCTTATCTCAAAT 57.588 29.630 0.00 0.00 0.00 2.32
6971 8648 8.677300 GTCAGCACCATTTTATCTTATCTCAAA 58.323 33.333 0.00 0.00 0.00 2.69
6972 8649 7.828717 TGTCAGCACCATTTTATCTTATCTCAA 59.171 33.333 0.00 0.00 0.00 3.02
6973 8650 7.337938 TGTCAGCACCATTTTATCTTATCTCA 58.662 34.615 0.00 0.00 0.00 3.27
6974 8651 7.792374 TGTCAGCACCATTTTATCTTATCTC 57.208 36.000 0.00 0.00 0.00 2.75
6975 8652 7.994911 TCATGTCAGCACCATTTTATCTTATCT 59.005 33.333 0.00 0.00 0.00 1.98
6976 8653 8.158169 TCATGTCAGCACCATTTTATCTTATC 57.842 34.615 0.00 0.00 0.00 1.75
6977 8654 8.701908 ATCATGTCAGCACCATTTTATCTTAT 57.298 30.769 0.00 0.00 0.00 1.73
6982 8668 7.828508 ACATATCATGTCAGCACCATTTTAT 57.171 32.000 0.00 0.00 39.92 1.40
7102 8788 6.425114 CACTGAGTACATTGTGTAAAGCTTCT 59.575 38.462 0.00 0.00 34.21 2.85
7106 8792 4.666655 CGCACTGAGTACATTGTGTAAAGC 60.667 45.833 0.00 0.00 34.21 3.51
7116 8802 2.812358 TGTGAACGCACTGAGTACAT 57.188 45.000 0.00 0.00 45.36 2.29
7124 8810 9.554724 CTACAATAAATAAAATGTGAACGCACT 57.445 29.630 0.00 0.00 45.36 4.40
7302 8988 5.023533 TCCCCAGAATTTCAGATTACTCG 57.976 43.478 0.00 0.00 0.00 4.18
7310 8996 1.064389 GTCCCCTCCCCAGAATTTCAG 60.064 57.143 0.00 0.00 0.00 3.02
7312 8998 0.107165 CGTCCCCTCCCCAGAATTTC 60.107 60.000 0.00 0.00 0.00 2.17
7330 9016 1.756950 TACAGAGGTGCTAGCCCCG 60.757 63.158 13.29 0.00 0.00 5.73
7335 9021 3.130693 GGTACAAGGTACAGAGGTGCTAG 59.869 52.174 8.60 0.00 0.00 3.42
7338 9024 1.066358 GGGTACAAGGTACAGAGGTGC 60.066 57.143 8.60 0.00 0.00 5.01
7365 9051 1.328680 CTGAAGACACACACACACAGC 59.671 52.381 0.00 0.00 0.00 4.40
7366 9052 2.892374 TCTGAAGACACACACACACAG 58.108 47.619 0.00 0.00 0.00 3.66
7367 9053 3.541996 ATCTGAAGACACACACACACA 57.458 42.857 0.00 0.00 0.00 3.72
7368 9054 4.808895 TGTAATCTGAAGACACACACACAC 59.191 41.667 0.00 0.00 0.00 3.82
7369 9055 5.017294 TGTAATCTGAAGACACACACACA 57.983 39.130 0.00 0.00 0.00 3.72
7370 9056 5.984233 TTGTAATCTGAAGACACACACAC 57.016 39.130 0.00 0.00 0.00 3.82
7371 9057 7.066887 ACAATTTGTAATCTGAAGACACACACA 59.933 33.333 0.00 0.00 0.00 3.72
7372 9058 7.417612 ACAATTTGTAATCTGAAGACACACAC 58.582 34.615 0.00 0.00 0.00 3.82
7373 9059 7.566760 ACAATTTGTAATCTGAAGACACACA 57.433 32.000 0.00 0.00 0.00 3.72
7374 9060 9.944663 TTTACAATTTGTAATCTGAAGACACAC 57.055 29.630 19.73 0.00 41.83 3.82
7376 9062 9.612620 CCTTTACAATTTGTAATCTGAAGACAC 57.387 33.333 19.73 0.00 41.83 3.67
7377 9063 8.296713 GCCTTTACAATTTGTAATCTGAAGACA 58.703 33.333 19.73 4.22 41.83 3.41
7378 9064 8.515414 AGCCTTTACAATTTGTAATCTGAAGAC 58.485 33.333 19.73 8.78 41.83 3.01
7379 9065 8.635765 AGCCTTTACAATTTGTAATCTGAAGA 57.364 30.769 19.73 5.42 41.83 2.87
7380 9066 9.696917 AAAGCCTTTACAATTTGTAATCTGAAG 57.303 29.630 19.73 14.10 41.83 3.02
7411 9286 5.533528 ACCACGTCTAAAAGCCTTTACAATT 59.466 36.000 0.00 0.00 0.00 2.32
7412 9287 5.048991 CACCACGTCTAAAAGCCTTTACAAT 60.049 40.000 0.00 0.00 0.00 2.71
7413 9288 4.273969 CACCACGTCTAAAAGCCTTTACAA 59.726 41.667 0.00 0.00 0.00 2.41
7414 9289 3.810941 CACCACGTCTAAAAGCCTTTACA 59.189 43.478 0.00 0.00 0.00 2.41
7415 9290 3.811497 ACACCACGTCTAAAAGCCTTTAC 59.189 43.478 0.00 0.00 0.00 2.01
7416 9291 4.075963 ACACCACGTCTAAAAGCCTTTA 57.924 40.909 0.00 0.00 0.00 1.85
7417 9292 2.927028 ACACCACGTCTAAAAGCCTTT 58.073 42.857 0.00 0.00 0.00 3.11
7418 9293 2.632987 ACACCACGTCTAAAAGCCTT 57.367 45.000 0.00 0.00 0.00 4.35
7419 9294 2.632987 AACACCACGTCTAAAAGCCT 57.367 45.000 0.00 0.00 0.00 4.58
7420 9295 3.187842 CCTAAACACCACGTCTAAAAGCC 59.812 47.826 0.00 0.00 0.00 4.35
7421 9296 3.364664 GCCTAAACACCACGTCTAAAAGC 60.365 47.826 0.00 0.00 0.00 3.51
7422 9297 4.062991 AGCCTAAACACCACGTCTAAAAG 58.937 43.478 0.00 0.00 0.00 2.27
7423 9298 4.060205 GAGCCTAAACACCACGTCTAAAA 58.940 43.478 0.00 0.00 0.00 1.52
7424 9299 3.555586 GGAGCCTAAACACCACGTCTAAA 60.556 47.826 0.00 0.00 0.00 1.85
7425 9300 2.028748 GGAGCCTAAACACCACGTCTAA 60.029 50.000 0.00 0.00 0.00 2.10
7426 9301 1.547372 GGAGCCTAAACACCACGTCTA 59.453 52.381 0.00 0.00 0.00 2.59
7427 9302 0.320697 GGAGCCTAAACACCACGTCT 59.679 55.000 0.00 0.00 0.00 4.18
7428 9303 0.320697 AGGAGCCTAAACACCACGTC 59.679 55.000 0.00 0.00 0.00 4.34
7429 9304 1.549170 CTAGGAGCCTAAACACCACGT 59.451 52.381 0.00 0.00 0.00 4.49
7430 9305 1.134788 CCTAGGAGCCTAAACACCACG 60.135 57.143 1.05 0.00 0.00 4.94
7431 9306 1.907255 ACCTAGGAGCCTAAACACCAC 59.093 52.381 17.98 0.00 0.00 4.16
7432 9307 1.906574 CACCTAGGAGCCTAAACACCA 59.093 52.381 17.98 0.00 0.00 4.17
7433 9308 1.407025 GCACCTAGGAGCCTAAACACC 60.407 57.143 19.57 0.00 0.00 4.16
7434 9309 1.278127 TGCACCTAGGAGCCTAAACAC 59.722 52.381 25.94 0.00 0.00 3.32
7435 9310 1.651737 TGCACCTAGGAGCCTAAACA 58.348 50.000 25.94 5.69 0.00 2.83
7436 9311 4.319177 CATATGCACCTAGGAGCCTAAAC 58.681 47.826 25.94 0.85 0.00 2.01
7437 9312 3.244561 GCATATGCACCTAGGAGCCTAAA 60.245 47.826 25.94 9.83 41.59 1.85
7438 9313 2.303022 GCATATGCACCTAGGAGCCTAA 59.697 50.000 25.94 13.05 41.59 2.69
7439 9314 1.902508 GCATATGCACCTAGGAGCCTA 59.097 52.381 25.94 20.86 41.59 3.93
7440 9315 0.689623 GCATATGCACCTAGGAGCCT 59.310 55.000 25.94 19.44 41.59 4.58
7441 9316 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
7459 9334 1.137479 AGCGGAAATTGGCAATGGATG 59.863 47.619 14.47 5.99 0.00 3.51
7460 9335 1.488390 AGCGGAAATTGGCAATGGAT 58.512 45.000 14.47 3.23 0.00 3.41
7461 9336 1.265236 AAGCGGAAATTGGCAATGGA 58.735 45.000 14.47 0.00 0.00 3.41
7462 9337 2.097680 AAAGCGGAAATTGGCAATGG 57.902 45.000 14.47 5.09 0.00 3.16
7463 9338 4.244862 ACTAAAAGCGGAAATTGGCAATG 58.755 39.130 14.47 2.00 0.00 2.82
7464 9339 4.494484 GACTAAAAGCGGAAATTGGCAAT 58.506 39.130 6.96 6.96 0.00 3.56
7465 9340 3.610585 CGACTAAAAGCGGAAATTGGCAA 60.611 43.478 0.68 0.68 0.00 4.52
7466 9341 2.095466 CGACTAAAAGCGGAAATTGGCA 60.095 45.455 0.00 0.00 0.00 4.92
7467 9342 2.515912 CGACTAAAAGCGGAAATTGGC 58.484 47.619 0.00 0.00 0.00 4.52
7468 9343 2.515912 GCGACTAAAAGCGGAAATTGG 58.484 47.619 0.00 0.00 0.00 3.16
7477 9352 2.041244 CAAAACACCGCGACTAAAAGC 58.959 47.619 8.23 0.00 0.00 3.51
7478 9353 2.646250 CCAAAACACCGCGACTAAAAG 58.354 47.619 8.23 0.00 0.00 2.27
7479 9354 1.268640 GCCAAAACACCGCGACTAAAA 60.269 47.619 8.23 0.00 0.00 1.52
7480 9355 0.308376 GCCAAAACACCGCGACTAAA 59.692 50.000 8.23 0.00 0.00 1.85
7481 9356 0.533308 AGCCAAAACACCGCGACTAA 60.533 50.000 8.23 0.00 0.00 2.24
7482 9357 0.947180 GAGCCAAAACACCGCGACTA 60.947 55.000 8.23 0.00 0.00 2.59
7483 9358 2.203153 AGCCAAAACACCGCGACT 60.203 55.556 8.23 0.00 0.00 4.18
7484 9359 2.251371 GAGCCAAAACACCGCGAC 59.749 61.111 8.23 0.00 0.00 5.19
7485 9360 2.102109 TAGGAGCCAAAACACCGCGA 62.102 55.000 8.23 0.00 0.00 5.87
7486 9361 1.635663 CTAGGAGCCAAAACACCGCG 61.636 60.000 0.00 0.00 0.00 6.46
7487 9362 1.305930 CCTAGGAGCCAAAACACCGC 61.306 60.000 1.05 0.00 0.00 5.68
7488 9363 0.036306 ACCTAGGAGCCAAAACACCG 59.964 55.000 17.98 0.00 0.00 4.94
7489 9364 1.534729 CACCTAGGAGCCAAAACACC 58.465 55.000 17.98 0.00 0.00 4.16
7490 9365 0.881796 GCACCTAGGAGCCAAAACAC 59.118 55.000 19.57 0.00 0.00 3.32
7491 9366 0.476338 TGCACCTAGGAGCCAAAACA 59.524 50.000 25.94 5.69 0.00 2.83
7492 9367 1.839424 ATGCACCTAGGAGCCAAAAC 58.161 50.000 25.94 0.85 0.00 2.43
7493 9368 3.554934 CATATGCACCTAGGAGCCAAAA 58.445 45.455 25.94 9.83 0.00 2.44
7494 9369 2.749466 GCATATGCACCTAGGAGCCAAA 60.749 50.000 25.94 13.05 41.59 3.28
7495 9370 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
7496 9371 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
7497 9372 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
7508 9383 4.916983 TTTAGACAATGGGTGCATATGC 57.083 40.909 21.09 21.09 42.50 3.14
7509 9384 9.814899 TTTTTATTTAGACAATGGGTGCATATG 57.185 29.630 0.00 0.00 0.00 1.78
7511 9386 9.030452 ACTTTTTATTTAGACAATGGGTGCATA 57.970 29.630 0.00 0.00 0.00 3.14
7512 9387 7.906327 ACTTTTTATTTAGACAATGGGTGCAT 58.094 30.769 0.00 0.00 0.00 3.96
7513 9388 7.296628 ACTTTTTATTTAGACAATGGGTGCA 57.703 32.000 0.00 0.00 0.00 4.57
7514 9389 9.699703 TTAACTTTTTATTTAGACAATGGGTGC 57.300 29.630 0.00 0.00 0.00 5.01
7540 9415 4.311606 CGGGATTTTTGTTCCGGATTTTT 58.688 39.130 4.15 0.00 38.93 1.94
7541 9416 3.863021 GCGGGATTTTTGTTCCGGATTTT 60.863 43.478 4.15 0.00 42.43 1.82
7542 9417 2.353307 GCGGGATTTTTGTTCCGGATTT 60.353 45.455 4.15 0.00 42.43 2.17
7543 9418 1.203758 GCGGGATTTTTGTTCCGGATT 59.796 47.619 4.15 0.00 42.43 3.01
7544 9419 0.815095 GCGGGATTTTTGTTCCGGAT 59.185 50.000 4.15 0.00 42.43 4.18
7545 9420 1.579084 CGCGGGATTTTTGTTCCGGA 61.579 55.000 0.00 0.00 42.43 5.14
7546 9421 1.154112 CGCGGGATTTTTGTTCCGG 60.154 57.895 0.00 0.00 42.43 5.14
7547 9422 1.154112 CCGCGGGATTTTTGTTCCG 60.154 57.895 20.10 0.00 44.70 4.30
7548 9423 1.214325 CCCGCGGGATTTTTGTTCC 59.786 57.895 41.82 0.00 37.50 3.62
7549 9424 4.880899 CCCGCGGGATTTTTGTTC 57.119 55.556 41.82 0.00 37.50 3.18
7559 9434 1.183030 TGTCCAGATATACCCGCGGG 61.183 60.000 42.17 42.17 42.03 6.13
7560 9435 0.895530 ATGTCCAGATATACCCGCGG 59.104 55.000 21.04 21.04 0.00 6.46
7561 9436 2.231478 AGAATGTCCAGATATACCCGCG 59.769 50.000 0.00 0.00 0.00 6.46
7562 9437 3.963428 AGAATGTCCAGATATACCCGC 57.037 47.619 0.00 0.00 0.00 6.13
7563 9438 4.022242 ACGAAGAATGTCCAGATATACCCG 60.022 45.833 0.00 0.00 0.00 5.28
7564 9439 5.230942 CACGAAGAATGTCCAGATATACCC 58.769 45.833 0.00 0.00 0.00 3.69
7565 9440 4.686554 GCACGAAGAATGTCCAGATATACC 59.313 45.833 0.00 0.00 0.00 2.73
7566 9441 5.289595 TGCACGAAGAATGTCCAGATATAC 58.710 41.667 0.00 0.00 0.00 1.47
7567 9442 5.529581 TGCACGAAGAATGTCCAGATATA 57.470 39.130 0.00 0.00 0.00 0.86
7568 9443 4.406648 TGCACGAAGAATGTCCAGATAT 57.593 40.909 0.00 0.00 0.00 1.63
7569 9444 3.885724 TGCACGAAGAATGTCCAGATA 57.114 42.857 0.00 0.00 0.00 1.98
7570 9445 2.768253 TGCACGAAGAATGTCCAGAT 57.232 45.000 0.00 0.00 0.00 2.90
7571 9446 2.349590 CATGCACGAAGAATGTCCAGA 58.650 47.619 0.00 0.00 0.00 3.86
7572 9447 1.202110 GCATGCACGAAGAATGTCCAG 60.202 52.381 14.21 0.00 0.00 3.86
7573 9448 0.804364 GCATGCACGAAGAATGTCCA 59.196 50.000 14.21 0.00 0.00 4.02
7574 9449 0.804364 TGCATGCACGAAGAATGTCC 59.196 50.000 18.46 0.00 0.00 4.02
7575 9450 1.887320 GTGCATGCACGAAGAATGTC 58.113 50.000 33.20 8.45 37.19 3.06
7585 9460 1.130955 CCGAAACTTTGTGCATGCAC 58.869 50.000 38.00 38.00 46.33 4.57
7586 9461 0.743688 ACCGAAACTTTGTGCATGCA 59.256 45.000 18.46 18.46 0.00 3.96
7587 9462 1.130955 CACCGAAACTTTGTGCATGC 58.869 50.000 11.82 11.82 0.00 4.06
7588 9463 2.772568 TCACCGAAACTTTGTGCATG 57.227 45.000 0.00 0.00 0.00 4.06
7589 9464 3.791973 TTTCACCGAAACTTTGTGCAT 57.208 38.095 0.00 0.00 0.00 3.96
7590 9465 3.791973 ATTTCACCGAAACTTTGTGCA 57.208 38.095 0.00 0.00 34.23 4.57
7591 9466 3.662186 CGTATTTCACCGAAACTTTGTGC 59.338 43.478 0.00 0.00 34.23 4.57
7592 9467 4.901881 GTCGTATTTCACCGAAACTTTGTG 59.098 41.667 0.00 0.00 34.23 3.33
7593 9468 4.318263 CGTCGTATTTCACCGAAACTTTGT 60.318 41.667 0.00 0.00 34.23 2.83
7594 9469 4.138817 CGTCGTATTTCACCGAAACTTTG 58.861 43.478 0.00 0.00 34.23 2.77
7595 9470 3.803778 ACGTCGTATTTCACCGAAACTTT 59.196 39.130 0.00 0.00 34.23 2.66
7596 9471 3.383761 ACGTCGTATTTCACCGAAACTT 58.616 40.909 0.00 0.00 34.23 2.66
7597 9472 3.017265 ACGTCGTATTTCACCGAAACT 57.983 42.857 0.00 0.00 34.23 2.66
7598 9473 3.776043 AACGTCGTATTTCACCGAAAC 57.224 42.857 0.00 0.00 34.23 2.78
7599 9474 4.792528 AAAACGTCGTATTTCACCGAAA 57.207 36.364 0.00 0.00 35.94 3.46
7600 9475 4.792528 AAAAACGTCGTATTTCACCGAA 57.207 36.364 0.00 0.00 34.47 4.30
7660 9535 9.643693 GACAATTTCTGATGGTTCATTACAATT 57.356 29.630 0.00 0.00 0.00 2.32
7661 9536 8.253113 GGACAATTTCTGATGGTTCATTACAAT 58.747 33.333 0.00 0.00 0.00 2.71
7662 9537 7.451255 AGGACAATTTCTGATGGTTCATTACAA 59.549 33.333 0.00 0.00 0.00 2.41
7663 9538 6.947733 AGGACAATTTCTGATGGTTCATTACA 59.052 34.615 0.00 0.00 0.00 2.41
7664 9539 7.396540 AGGACAATTTCTGATGGTTCATTAC 57.603 36.000 0.00 0.00 0.00 1.89
7665 9540 8.421249 AAAGGACAATTTCTGATGGTTCATTA 57.579 30.769 0.00 0.00 0.00 1.90
7666 9541 6.923199 AAGGACAATTTCTGATGGTTCATT 57.077 33.333 0.00 0.00 0.00 2.57
7667 9542 6.923199 AAAGGACAATTTCTGATGGTTCAT 57.077 33.333 0.00 0.00 0.00 2.57
7668 9543 6.729690 AAAAGGACAATTTCTGATGGTTCA 57.270 33.333 0.00 0.00 0.00 3.18
7707 9582 6.230849 GTTTTTGGTGAAAAACGAGGTTTT 57.769 33.333 7.24 0.00 46.67 2.43
7708 9583 5.849357 GTTTTTGGTGAAAAACGAGGTTT 57.151 34.783 7.24 0.00 46.67 3.27
7716 9591 5.296780 TGTGCACAAAGTTTTTGGTGAAAAA 59.703 32.000 19.28 0.00 40.12 1.94
7717 9592 4.816385 TGTGCACAAAGTTTTTGGTGAAAA 59.184 33.333 19.28 0.00 40.12 2.29
7718 9593 4.212214 GTGTGCACAAAGTTTTTGGTGAAA 59.788 37.500 23.59 0.00 40.12 2.69
7719 9594 3.743396 GTGTGCACAAAGTTTTTGGTGAA 59.257 39.130 23.59 0.00 40.12 3.18
7720 9595 3.243873 TGTGTGCACAAAGTTTTTGGTGA 60.244 39.130 23.59 0.00 40.12 4.02
7721 9596 3.062763 TGTGTGCACAAAGTTTTTGGTG 58.937 40.909 23.59 2.55 40.57 4.17
7722 9597 3.063485 GTGTGTGCACAAAGTTTTTGGT 58.937 40.909 23.59 0.00 43.77 3.67
7723 9598 3.720818 GTGTGTGCACAAAGTTTTTGG 57.279 42.857 23.59 0.00 43.77 3.28
7742 9617 5.461078 GCGTGTATATCCGAACACTTTATGT 59.539 40.000 5.25 0.00 46.42 2.29
7743 9618 5.387035 CGCGTGTATATCCGAACACTTTATG 60.387 44.000 0.00 0.00 43.04 1.90
7744 9619 4.678287 CGCGTGTATATCCGAACACTTTAT 59.322 41.667 0.00 0.00 43.04 1.40
7745 9620 4.037021 CGCGTGTATATCCGAACACTTTA 58.963 43.478 0.00 0.00 43.04 1.85
7746 9621 2.855963 CGCGTGTATATCCGAACACTTT 59.144 45.455 0.00 0.00 43.04 2.66
7747 9622 2.456989 CGCGTGTATATCCGAACACTT 58.543 47.619 0.00 0.00 43.04 3.16
7748 9623 1.268896 CCGCGTGTATATCCGAACACT 60.269 52.381 4.92 0.00 43.04 3.55
7749 9624 1.126079 CCGCGTGTATATCCGAACAC 58.874 55.000 4.92 0.00 42.04 3.32
7750 9625 0.031043 CCCGCGTGTATATCCGAACA 59.969 55.000 4.92 0.00 0.00 3.18
7751 9626 0.665369 CCCCGCGTGTATATCCGAAC 60.665 60.000 4.92 0.00 0.00 3.95
7752 9627 1.108727 ACCCCGCGTGTATATCCGAA 61.109 55.000 4.92 0.00 0.00 4.30
7753 9628 1.108727 AACCCCGCGTGTATATCCGA 61.109 55.000 4.92 0.00 0.00 4.55
7754 9629 0.249573 AAACCCCGCGTGTATATCCG 60.250 55.000 4.92 0.00 0.00 4.18
7755 9630 1.957668 AAAACCCCGCGTGTATATCC 58.042 50.000 4.92 0.00 0.00 2.59
7756 9631 2.679336 ACAAAAACCCCGCGTGTATATC 59.321 45.455 4.92 0.00 0.00 1.63
7757 9632 2.713877 ACAAAAACCCCGCGTGTATAT 58.286 42.857 4.92 0.00 0.00 0.86
7758 9633 2.181954 ACAAAAACCCCGCGTGTATA 57.818 45.000 4.92 0.00 0.00 1.47
7759 9634 1.267533 GAACAAAAACCCCGCGTGTAT 59.732 47.619 4.92 0.00 0.00 2.29
7760 9635 0.662085 GAACAAAAACCCCGCGTGTA 59.338 50.000 4.92 0.00 0.00 2.90
7761 9636 1.434287 GAACAAAAACCCCGCGTGT 59.566 52.632 4.92 0.00 0.00 4.49
7762 9637 1.299544 GGAACAAAAACCCCGCGTG 60.300 57.895 4.92 0.00 0.00 5.34
7763 9638 2.836793 CGGAACAAAAACCCCGCGT 61.837 57.895 4.92 0.00 35.29 6.01
7764 9639 2.050805 CGGAACAAAAACCCCGCG 60.051 61.111 0.00 0.00 35.29 6.46
7765 9640 0.315886 ATTCGGAACAAAAACCCCGC 59.684 50.000 0.00 0.00 41.55 6.13
7766 9641 2.804697 AATTCGGAACAAAAACCCCG 57.195 45.000 0.00 0.00 43.02 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.