Multiple sequence alignment - TraesCS1D01G254300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G254300 chr1D 100.000 3217 0 0 1 3217 346201091 346197875 0.000000e+00 5941.0
1 TraesCS1D01G254300 chr1D 94.811 848 28 7 581 1422 481961642 481960805 0.000000e+00 1308.0
2 TraesCS1D01G254300 chr3D 98.081 2658 30 4 581 3217 182084694 182087351 0.000000e+00 4606.0
3 TraesCS1D01G254300 chr3D 97.295 2662 47 5 581 3217 356978263 356975602 0.000000e+00 4494.0
4 TraesCS1D01G254300 chr3D 90.383 1882 111 31 578 2396 16121896 16120022 0.000000e+00 2409.0
5 TraesCS1D01G254300 chr3D 99.068 858 8 0 1771 2628 152703969 152704826 0.000000e+00 1541.0
6 TraesCS1D01G254300 chr3D 88.651 1216 81 23 579 1749 468666179 468664976 0.000000e+00 1428.0
7 TraesCS1D01G254300 chr3D 95.749 541 9 1 2691 3217 152705151 152705691 0.000000e+00 859.0
8 TraesCS1D01G254300 chr3D 92.903 465 14 3 1108 1553 578353343 578352879 0.000000e+00 658.0
9 TraesCS1D01G254300 chr3D 100.000 71 0 0 1679 1749 578322911 578322841 7.240000e-27 132.0
10 TraesCS1D01G254300 chr3D 98.485 66 1 0 2840 2905 152704832 152704897 2.030000e-22 117.0
11 TraesCS1D01G254300 chr5D 97.807 2052 31 6 581 2624 78754566 78756611 0.000000e+00 3528.0
12 TraesCS1D01G254300 chr5D 99.534 858 4 0 1771 2628 125658751 125659608 0.000000e+00 1563.0
13 TraesCS1D01G254300 chr5D 98.254 802 12 2 1771 2572 423750024 423750823 0.000000e+00 1402.0
14 TraesCS1D01G254300 chr5D 95.070 852 23 10 581 1423 423748938 423749779 0.000000e+00 1323.0
15 TraesCS1D01G254300 chr5D 94.575 848 30 7 581 1422 474542533 474543370 0.000000e+00 1297.0
16 TraesCS1D01G254300 chr5D 90.744 497 9 8 2735 3217 125660081 125660554 2.110000e-176 628.0
17 TraesCS1D01G254300 chr5D 97.792 317 7 0 2901 3217 423751037 423751353 6.070000e-152 547.0
18 TraesCS1D01G254300 chr5D 96.000 75 2 1 1679 1752 284885996 284886070 1.570000e-23 121.0
19 TraesCS1D01G254300 chr5D 97.561 41 1 0 2840 2880 78756682 78756722 1.600000e-08 71.3
20 TraesCS1D01G254300 chr5D 100.000 32 0 0 2840 2871 125659614 125659645 3.470000e-05 60.2
21 TraesCS1D01G254300 chr7D 97.386 2066 25 9 581 2624 574241587 574239529 0.000000e+00 3489.0
22 TraesCS1D01G254300 chr7D 97.262 1461 26 1 1771 3217 65816016 65817476 0.000000e+00 2464.0
23 TraesCS1D01G254300 chr7D 88.487 2102 123 42 576 2580 154001433 154003512 0.000000e+00 2431.0
24 TraesCS1D01G254300 chr7D 94.693 848 24 8 581 1422 508795049 508795881 0.000000e+00 1297.0
25 TraesCS1D01G254300 chr7D 96.508 315 11 0 2901 3215 41464118 41463804 3.680000e-144 521.0
26 TraesCS1D01G254300 chr7D 92.705 329 10 6 2901 3217 574239372 574239046 2.260000e-126 462.0
27 TraesCS1D01G254300 chr7D 96.429 56 2 0 1 56 417587228 417587173 3.420000e-15 93.5
28 TraesCS1D01G254300 chr4A 87.280 2099 132 53 581 2580 693356866 693354804 0.000000e+00 2272.0
29 TraesCS1D01G254300 chr4A 94.928 138 7 0 1354 1491 693356024 693355887 1.940000e-52 217.0
30 TraesCS1D01G254300 chr2D 98.254 802 12 2 1771 2572 102620845 102621644 0.000000e+00 1402.0
31 TraesCS1D01G254300 chr2D 97.792 317 7 0 2901 3217 102621847 102622163 6.070000e-152 547.0
32 TraesCS1D01G254300 chr6D 94.322 317 18 0 2901 3217 100209259 100208943 1.340000e-133 486.0
33 TraesCS1D01G254300 chr6D 92.222 90 7 0 139 228 356952128 356952039 9.370000e-26 128.0
34 TraesCS1D01G254300 chr6B 91.223 319 24 4 2901 3217 149427331 149427647 6.380000e-117 431.0
35 TraesCS1D01G254300 chr6B 83.391 289 20 14 1354 1614 149424939 149425227 3.210000e-60 243.0
36 TraesCS1D01G254300 chr2B 90.909 319 25 4 2901 3217 54450956 54450640 2.970000e-115 425.0
37 TraesCS1D01G254300 chr3B 90.735 313 28 1 2906 3217 392291425 392291113 1.790000e-112 416.0
38 TraesCS1D01G254300 chr3B 84.971 173 18 4 1495 1659 392293144 392292972 5.520000e-38 169.0
39 TraesCS1D01G254300 chr5B 91.304 276 22 2 2943 3217 696510565 696510291 3.030000e-100 375.0
40 TraesCS1D01G254300 chr5B 93.103 87 5 1 2542 2628 696511404 696511319 3.370000e-25 126.0
41 TraesCS1D01G254300 chr1B 89.655 290 20 5 2936 3217 594016983 594017270 8.480000e-96 361.0
42 TraesCS1D01G254300 chr4D 98.230 113 2 0 2735 2847 353864532 353864644 7.040000e-47 198.0
43 TraesCS1D01G254300 chr4D 96.460 113 4 0 2735 2847 152889011 152889123 1.520000e-43 187.0
44 TraesCS1D01G254300 chr4D 93.846 65 2 1 1 63 454364547 454364483 2.640000e-16 97.1
45 TraesCS1D01G254300 chr3A 94.690 113 6 0 2735 2847 351706817 351706929 3.300000e-40 176.0
46 TraesCS1D01G254300 chr6A 93.805 113 7 0 2735 2847 569404658 569404546 1.530000e-38 171.0
47 TraesCS1D01G254300 chr6A 75.806 372 61 15 156 518 171192308 171192659 9.240000e-36 161.0
48 TraesCS1D01G254300 chr7B 96.226 53 1 1 2573 2624 719467361 719467309 5.720000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G254300 chr1D 346197875 346201091 3216 True 5941.000000 5941 100.000000 1 3217 1 chr1D.!!$R1 3216
1 TraesCS1D01G254300 chr1D 481960805 481961642 837 True 1308.000000 1308 94.811000 581 1422 1 chr1D.!!$R2 841
2 TraesCS1D01G254300 chr3D 182084694 182087351 2657 False 4606.000000 4606 98.081000 581 3217 1 chr3D.!!$F1 2636
3 TraesCS1D01G254300 chr3D 356975602 356978263 2661 True 4494.000000 4494 97.295000 581 3217 1 chr3D.!!$R2 2636
4 TraesCS1D01G254300 chr3D 16120022 16121896 1874 True 2409.000000 2409 90.383000 578 2396 1 chr3D.!!$R1 1818
5 TraesCS1D01G254300 chr3D 468664976 468666179 1203 True 1428.000000 1428 88.651000 579 1749 1 chr3D.!!$R3 1170
6 TraesCS1D01G254300 chr3D 152703969 152705691 1722 False 839.000000 1541 97.767333 1771 3217 3 chr3D.!!$F2 1446
7 TraesCS1D01G254300 chr5D 78754566 78756722 2156 False 1799.650000 3528 97.684000 581 2880 2 chr5D.!!$F3 2299
8 TraesCS1D01G254300 chr5D 474542533 474543370 837 False 1297.000000 1297 94.575000 581 1422 1 chr5D.!!$F2 841
9 TraesCS1D01G254300 chr5D 423748938 423751353 2415 False 1090.666667 1402 97.038667 581 3217 3 chr5D.!!$F5 2636
10 TraesCS1D01G254300 chr5D 125658751 125660554 1803 False 750.400000 1563 96.759333 1771 3217 3 chr5D.!!$F4 1446
11 TraesCS1D01G254300 chr7D 65816016 65817476 1460 False 2464.000000 2464 97.262000 1771 3217 1 chr7D.!!$F1 1446
12 TraesCS1D01G254300 chr7D 154001433 154003512 2079 False 2431.000000 2431 88.487000 576 2580 1 chr7D.!!$F2 2004
13 TraesCS1D01G254300 chr7D 574239046 574241587 2541 True 1975.500000 3489 95.045500 581 3217 2 chr7D.!!$R3 2636
14 TraesCS1D01G254300 chr7D 508795049 508795881 832 False 1297.000000 1297 94.693000 581 1422 1 chr7D.!!$F3 841
15 TraesCS1D01G254300 chr4A 693354804 693356866 2062 True 1244.500000 2272 91.104000 581 2580 2 chr4A.!!$R1 1999
16 TraesCS1D01G254300 chr2D 102620845 102622163 1318 False 974.500000 1402 98.023000 1771 3217 2 chr2D.!!$F1 1446
17 TraesCS1D01G254300 chr6B 149424939 149427647 2708 False 337.000000 431 87.307000 1354 3217 2 chr6B.!!$F1 1863
18 TraesCS1D01G254300 chr3B 392291113 392293144 2031 True 292.500000 416 87.853000 1495 3217 2 chr3B.!!$R1 1722
19 TraesCS1D01G254300 chr5B 696510291 696511404 1113 True 250.500000 375 92.203500 2542 3217 2 chr5B.!!$R1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.030235 GCCGTTGACTTGGTGGAAAC 59.970 55.0 0.0 0.0 0.00 2.78 F
426 427 0.033504 AACGATGGACGCAACAGTCT 59.966 50.0 0.0 0.0 46.94 3.24 F
482 483 0.107410 TTTCCGCATGTAATCGGCCT 60.107 50.0 0.0 0.0 44.91 5.19 F
525 526 0.174845 TAGTTTCGATCTGGCACGGG 59.825 55.0 0.0 0.0 33.92 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2318 2.996249 TCTGCCATGATTCTCCTCAC 57.004 50.000 0.00 0.0 0.00 3.51 R
2139 2557 3.152341 CCTTCATCTTGCCAAAGTCAGT 58.848 45.455 0.00 0.0 34.78 3.41 R
2214 2632 4.232091 GTGTTCCTAATGATCTCCCCCTA 58.768 47.826 0.00 0.0 0.00 3.53 R
2872 5062 1.000171 CTTGAGCCCAAGCCTTGTTTC 60.000 52.381 3.37 0.0 42.72 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.005867 TAACCCGGCGACTTGACAC 60.006 57.895 9.30 0.00 0.00 3.67
19 20 1.746322 TAACCCGGCGACTTGACACA 61.746 55.000 9.30 0.00 0.00 3.72
20 21 2.738521 CCCGGCGACTTGACACAG 60.739 66.667 9.30 0.00 0.00 3.66
21 22 3.414700 CCGGCGACTTGACACAGC 61.415 66.667 9.30 0.00 0.00 4.40
22 23 2.661537 CGGCGACTTGACACAGCA 60.662 61.111 0.00 0.00 0.00 4.41
23 24 2.661566 CGGCGACTTGACACAGCAG 61.662 63.158 0.00 0.00 0.00 4.24
24 25 1.300931 GGCGACTTGACACAGCAGA 60.301 57.895 0.00 0.00 0.00 4.26
25 26 1.287730 GGCGACTTGACACAGCAGAG 61.288 60.000 0.00 0.00 0.00 3.35
26 27 0.319040 GCGACTTGACACAGCAGAGA 60.319 55.000 0.00 0.00 0.00 3.10
27 28 1.695813 CGACTTGACACAGCAGAGAG 58.304 55.000 0.00 0.00 0.00 3.20
28 29 1.427435 GACTTGACACAGCAGAGAGC 58.573 55.000 0.00 0.00 46.19 4.09
68 69 4.821589 GGCGGCTCGAGGAAGGTG 62.822 72.222 15.58 0.00 0.00 4.00
69 70 3.760035 GCGGCTCGAGGAAGGTGA 61.760 66.667 15.58 0.00 0.00 4.02
70 71 3.082579 GCGGCTCGAGGAAGGTGAT 62.083 63.158 15.58 0.00 0.00 3.06
71 72 1.517832 CGGCTCGAGGAAGGTGATT 59.482 57.895 15.58 0.00 0.00 2.57
72 73 0.528684 CGGCTCGAGGAAGGTGATTC 60.529 60.000 15.58 0.00 37.17 2.52
73 74 0.537188 GGCTCGAGGAAGGTGATTCA 59.463 55.000 15.58 0.00 39.91 2.57
74 75 1.472376 GGCTCGAGGAAGGTGATTCAG 60.472 57.143 15.58 0.00 39.91 3.02
75 76 1.472376 GCTCGAGGAAGGTGATTCAGG 60.472 57.143 15.58 0.00 39.91 3.86
76 77 1.137872 CTCGAGGAAGGTGATTCAGGG 59.862 57.143 3.91 0.00 39.91 4.45
77 78 1.195115 CGAGGAAGGTGATTCAGGGA 58.805 55.000 0.00 0.00 39.91 4.20
78 79 1.137872 CGAGGAAGGTGATTCAGGGAG 59.862 57.143 0.00 0.00 39.91 4.30
79 80 2.472029 GAGGAAGGTGATTCAGGGAGA 58.528 52.381 0.00 0.00 39.91 3.71
80 81 2.169561 GAGGAAGGTGATTCAGGGAGAC 59.830 54.545 0.00 0.00 39.91 3.36
81 82 1.909302 GGAAGGTGATTCAGGGAGACA 59.091 52.381 0.00 0.00 39.91 3.41
82 83 2.355209 GGAAGGTGATTCAGGGAGACAC 60.355 54.545 0.00 0.00 39.91 3.67
83 84 0.898320 AGGTGATTCAGGGAGACACG 59.102 55.000 0.00 0.00 33.08 4.49
84 85 0.108138 GGTGATTCAGGGAGACACGG 60.108 60.000 0.00 0.00 33.08 4.94
85 86 0.741221 GTGATTCAGGGAGACACGGC 60.741 60.000 0.00 0.00 0.00 5.68
86 87 1.191489 TGATTCAGGGAGACACGGCA 61.191 55.000 0.00 0.00 0.00 5.69
87 88 0.741221 GATTCAGGGAGACACGGCAC 60.741 60.000 0.00 0.00 0.00 5.01
88 89 2.185310 ATTCAGGGAGACACGGCACC 62.185 60.000 0.00 0.00 0.00 5.01
89 90 4.742201 CAGGGAGACACGGCACCG 62.742 72.222 7.71 7.71 46.03 4.94
128 129 4.580835 GGAGACGCAGAGAACCAC 57.419 61.111 0.00 0.00 0.00 4.16
129 130 1.666011 GGAGACGCAGAGAACCACA 59.334 57.895 0.00 0.00 0.00 4.17
130 131 0.389166 GGAGACGCAGAGAACCACAG 60.389 60.000 0.00 0.00 0.00 3.66
131 132 0.315568 GAGACGCAGAGAACCACAGT 59.684 55.000 0.00 0.00 0.00 3.55
132 133 0.753262 AGACGCAGAGAACCACAGTT 59.247 50.000 0.00 0.00 39.54 3.16
133 134 0.861837 GACGCAGAGAACCACAGTTG 59.138 55.000 0.00 0.00 35.94 3.16
134 135 1.160329 ACGCAGAGAACCACAGTTGC 61.160 55.000 0.00 0.00 35.94 4.17
135 136 1.571460 GCAGAGAACCACAGTTGCG 59.429 57.895 0.00 0.00 35.94 4.85
136 137 1.845809 GCAGAGAACCACAGTTGCGG 61.846 60.000 0.00 0.00 35.94 5.69
137 138 1.598130 AGAGAACCACAGTTGCGGC 60.598 57.895 0.00 0.00 35.94 6.53
138 139 2.954753 GAGAACCACAGTTGCGGCG 61.955 63.158 0.51 0.51 35.94 6.46
139 140 4.025401 GAACCACAGTTGCGGCGG 62.025 66.667 9.78 0.00 35.94 6.13
144 145 4.329545 ACAGTTGCGGCGGGTCAT 62.330 61.111 9.78 0.00 0.00 3.06
145 146 3.055719 CAGTTGCGGCGGGTCATT 61.056 61.111 9.78 0.00 0.00 2.57
146 147 3.055719 AGTTGCGGCGGGTCATTG 61.056 61.111 9.78 0.00 0.00 2.82
147 148 3.053291 GTTGCGGCGGGTCATTGA 61.053 61.111 9.78 0.00 0.00 2.57
148 149 3.053291 TTGCGGCGGGTCATTGAC 61.053 61.111 9.78 8.34 0.00 3.18
151 152 4.752879 CGGCGGGTCATTGACGGT 62.753 66.667 10.56 0.00 32.65 4.83
152 153 3.124921 GGCGGGTCATTGACGGTG 61.125 66.667 10.56 4.30 32.65 4.94
153 154 2.047655 GCGGGTCATTGACGGTGA 60.048 61.111 10.56 0.00 32.65 4.02
154 155 1.449601 GCGGGTCATTGACGGTGAT 60.450 57.895 10.56 0.00 32.65 3.06
155 156 1.024579 GCGGGTCATTGACGGTGATT 61.025 55.000 10.56 0.00 32.65 2.57
156 157 0.726827 CGGGTCATTGACGGTGATTG 59.273 55.000 10.56 0.00 32.65 2.67
157 158 1.674519 CGGGTCATTGACGGTGATTGA 60.675 52.381 10.56 0.00 32.65 2.57
158 159 2.643551 GGGTCATTGACGGTGATTGAT 58.356 47.619 10.56 0.00 32.65 2.57
159 160 2.355756 GGGTCATTGACGGTGATTGATG 59.644 50.000 10.56 0.00 32.65 3.07
160 161 2.355756 GGTCATTGACGGTGATTGATGG 59.644 50.000 10.56 0.00 32.65 3.51
161 162 3.270027 GTCATTGACGGTGATTGATGGA 58.730 45.455 0.13 0.00 0.00 3.41
162 163 3.310774 GTCATTGACGGTGATTGATGGAG 59.689 47.826 0.13 0.00 0.00 3.86
163 164 2.401583 TTGACGGTGATTGATGGAGG 57.598 50.000 0.00 0.00 0.00 4.30
164 165 0.107703 TGACGGTGATTGATGGAGGC 60.108 55.000 0.00 0.00 0.00 4.70
165 166 0.815615 GACGGTGATTGATGGAGGCC 60.816 60.000 0.00 0.00 0.00 5.19
166 167 1.889105 CGGTGATTGATGGAGGCCG 60.889 63.158 0.00 0.00 0.00 6.13
167 168 1.526917 GGTGATTGATGGAGGCCGG 60.527 63.158 0.00 0.00 0.00 6.13
168 169 2.189499 GTGATTGATGGAGGCCGGC 61.189 63.158 21.18 21.18 0.00 6.13
169 170 2.974698 GATTGATGGAGGCCGGCG 60.975 66.667 22.54 0.00 0.00 6.46
170 171 3.460672 GATTGATGGAGGCCGGCGA 62.461 63.158 22.54 4.20 0.00 5.54
171 172 2.940890 GATTGATGGAGGCCGGCGAA 62.941 60.000 22.54 5.83 0.00 4.70
172 173 2.550699 ATTGATGGAGGCCGGCGAAA 62.551 55.000 22.54 6.24 0.00 3.46
173 174 3.202706 GATGGAGGCCGGCGAAAC 61.203 66.667 22.54 11.28 0.00 2.78
174 175 4.796495 ATGGAGGCCGGCGAAACC 62.796 66.667 22.54 19.95 0.00 3.27
191 192 4.452733 CGGAGGGGAGCCGTTGAC 62.453 72.222 0.00 0.00 43.66 3.18
192 193 3.003763 GGAGGGGAGCCGTTGACT 61.004 66.667 0.00 0.00 0.00 3.41
193 194 2.593956 GGAGGGGAGCCGTTGACTT 61.594 63.158 0.00 0.00 0.00 3.01
194 195 1.376037 GAGGGGAGCCGTTGACTTG 60.376 63.158 0.00 0.00 0.00 3.16
195 196 2.359975 GGGGAGCCGTTGACTTGG 60.360 66.667 0.00 0.00 0.00 3.61
196 197 2.430367 GGGAGCCGTTGACTTGGT 59.570 61.111 0.00 0.00 0.00 3.67
197 198 1.966451 GGGAGCCGTTGACTTGGTG 60.966 63.158 0.00 0.00 0.00 4.17
198 199 1.966451 GGAGCCGTTGACTTGGTGG 60.966 63.158 0.00 0.00 0.00 4.61
199 200 1.070786 GAGCCGTTGACTTGGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
200 201 0.534203 GAGCCGTTGACTTGGTGGAA 60.534 55.000 0.00 0.00 0.00 3.53
201 202 0.106918 AGCCGTTGACTTGGTGGAAA 60.107 50.000 0.00 0.00 0.00 3.13
202 203 0.030235 GCCGTTGACTTGGTGGAAAC 59.970 55.000 0.00 0.00 0.00 2.78
203 204 1.384525 CCGTTGACTTGGTGGAAACA 58.615 50.000 0.00 0.00 38.70 2.83
204 205 1.333619 CCGTTGACTTGGTGGAAACAG 59.666 52.381 0.00 0.00 44.46 3.16
205 206 1.333619 CGTTGACTTGGTGGAAACAGG 59.666 52.381 0.00 0.00 44.46 4.00
206 207 2.375146 GTTGACTTGGTGGAAACAGGT 58.625 47.619 0.00 0.00 44.46 4.00
207 208 2.341846 TGACTTGGTGGAAACAGGTC 57.658 50.000 0.93 0.93 44.46 3.85
208 209 1.133915 TGACTTGGTGGAAACAGGTCC 60.134 52.381 5.25 0.00 42.30 4.46
209 210 0.179029 ACTTGGTGGAAACAGGTCCG 60.179 55.000 0.00 0.00 44.46 4.79
210 211 1.515521 CTTGGTGGAAACAGGTCCGC 61.516 60.000 0.00 0.00 45.82 5.54
212 213 3.655481 GTGGAAACAGGTCCGCAG 58.345 61.111 0.00 0.00 45.83 5.18
213 214 2.281484 TGGAAACAGGTCCGCAGC 60.281 61.111 0.00 0.00 40.96 5.25
214 215 3.423154 GGAAACAGGTCCGCAGCG 61.423 66.667 8.18 8.18 0.00 5.18
229 230 3.191539 GCGGCAGCTTCGAAGAGG 61.192 66.667 28.95 18.99 38.43 3.69
238 239 2.763930 CTTCGAAGAGGCGTAAAACG 57.236 50.000 20.74 0.00 41.32 3.60
239 240 2.322161 CTTCGAAGAGGCGTAAAACGA 58.678 47.619 20.74 0.00 40.97 3.85
248 249 2.875080 GCGTAAAACGACAGCTCAAT 57.125 45.000 3.22 0.00 46.05 2.57
249 250 2.495939 GCGTAAAACGACAGCTCAATG 58.504 47.619 3.22 0.00 46.05 2.82
250 251 2.724839 GCGTAAAACGACAGCTCAATGG 60.725 50.000 3.22 0.00 46.05 3.16
251 252 2.734606 CGTAAAACGACAGCTCAATGGA 59.265 45.455 0.00 0.00 46.05 3.41
252 253 3.181530 CGTAAAACGACAGCTCAATGGAG 60.182 47.826 0.00 0.00 46.05 3.86
260 261 4.749323 CTCAATGGAGCCCAGCAA 57.251 55.556 0.41 0.00 36.75 3.91
261 262 2.965805 CTCAATGGAGCCCAGCAAA 58.034 52.632 0.41 0.00 36.75 3.68
262 263 0.815734 CTCAATGGAGCCCAGCAAAG 59.184 55.000 0.41 0.00 36.75 2.77
263 264 0.612732 TCAATGGAGCCCAGCAAAGG 60.613 55.000 0.41 0.00 36.75 3.11
264 265 0.612732 CAATGGAGCCCAGCAAAGGA 60.613 55.000 0.41 0.00 36.75 3.36
265 266 0.114954 AATGGAGCCCAGCAAAGGAA 59.885 50.000 0.41 0.00 36.75 3.36
266 267 0.114954 ATGGAGCCCAGCAAAGGAAA 59.885 50.000 0.41 0.00 36.75 3.13
267 268 0.540365 TGGAGCCCAGCAAAGGAAAG 60.540 55.000 0.00 0.00 0.00 2.62
268 269 1.588597 GAGCCCAGCAAAGGAAAGC 59.411 57.895 0.00 0.00 0.00 3.51
269 270 1.152483 AGCCCAGCAAAGGAAAGCA 60.152 52.632 0.00 0.00 0.00 3.91
270 271 1.005748 GCCCAGCAAAGGAAAGCAC 60.006 57.895 0.00 0.00 0.00 4.40
271 272 1.286880 CCCAGCAAAGGAAAGCACG 59.713 57.895 0.00 0.00 0.00 5.34
272 273 1.286880 CCAGCAAAGGAAAGCACGG 59.713 57.895 0.00 0.00 0.00 4.94
273 274 1.372128 CAGCAAAGGAAAGCACGGC 60.372 57.895 0.00 0.00 0.00 5.68
274 275 1.529244 AGCAAAGGAAAGCACGGCT 60.529 52.632 0.00 0.00 42.56 5.52
275 276 1.372128 GCAAAGGAAAGCACGGCTG 60.372 57.895 0.00 0.00 39.62 4.85
276 277 1.372128 CAAAGGAAAGCACGGCTGC 60.372 57.895 0.00 0.00 44.63 5.25
277 278 1.827789 AAAGGAAAGCACGGCTGCA 60.828 52.632 0.50 0.00 46.97 4.41
278 279 1.391157 AAAGGAAAGCACGGCTGCAA 61.391 50.000 0.50 0.00 46.97 4.08
279 280 2.050077 GGAAAGCACGGCTGCAAC 60.050 61.111 0.50 0.00 46.97 4.17
280 281 2.555547 GGAAAGCACGGCTGCAACT 61.556 57.895 0.50 0.00 46.97 3.16
281 282 1.081840 GAAAGCACGGCTGCAACTC 60.082 57.895 0.50 2.04 46.97 3.01
282 283 1.510480 GAAAGCACGGCTGCAACTCT 61.510 55.000 0.50 0.00 46.97 3.24
283 284 1.789078 AAAGCACGGCTGCAACTCTG 61.789 55.000 0.50 0.00 46.97 3.35
297 298 3.070018 CAACTCTGCAGTAAGGACTTGG 58.930 50.000 14.67 0.00 31.73 3.61
298 299 2.330216 ACTCTGCAGTAAGGACTTGGT 58.670 47.619 14.67 0.00 31.73 3.67
299 300 2.037772 ACTCTGCAGTAAGGACTTGGTG 59.962 50.000 14.67 0.00 31.73 4.17
300 301 1.160137 CTGCAGTAAGGACTTGGTGC 58.840 55.000 5.25 11.40 31.73 5.01
301 302 0.250727 TGCAGTAAGGACTTGGTGCC 60.251 55.000 14.19 0.00 33.97 5.01
302 303 1.298859 GCAGTAAGGACTTGGTGCCG 61.299 60.000 8.48 0.00 31.73 5.69
303 304 1.003718 AGTAAGGACTTGGTGCCGC 60.004 57.895 0.00 0.00 28.61 6.53
304 305 1.302192 GTAAGGACTTGGTGCCGCA 60.302 57.895 0.00 0.00 0.00 5.69
305 306 0.887387 GTAAGGACTTGGTGCCGCAA 60.887 55.000 0.00 0.00 0.00 4.85
306 307 0.605319 TAAGGACTTGGTGCCGCAAG 60.605 55.000 0.00 0.00 34.79 4.01
307 308 2.594592 GGACTTGGTGCCGCAAGT 60.595 61.111 5.93 5.93 43.47 3.16
308 309 2.639286 GACTTGGTGCCGCAAGTG 59.361 61.111 10.34 0.00 41.19 3.16
309 310 2.906897 ACTTGGTGCCGCAAGTGG 60.907 61.111 5.50 0.00 39.82 4.00
310 311 2.594303 CTTGGTGCCGCAAGTGGA 60.594 61.111 3.37 0.00 0.00 4.02
311 312 1.973281 CTTGGTGCCGCAAGTGGAT 60.973 57.895 3.37 0.00 0.00 3.41
312 313 1.526575 CTTGGTGCCGCAAGTGGATT 61.527 55.000 3.37 0.00 0.00 3.01
313 314 1.112315 TTGGTGCCGCAAGTGGATTT 61.112 50.000 3.37 0.00 0.00 2.17
314 315 1.112315 TGGTGCCGCAAGTGGATTTT 61.112 50.000 3.37 0.00 0.00 1.82
315 316 0.667184 GGTGCCGCAAGTGGATTTTG 60.667 55.000 3.37 0.00 0.00 2.44
316 317 0.313672 GTGCCGCAAGTGGATTTTGA 59.686 50.000 3.37 0.00 0.00 2.69
317 318 1.067635 GTGCCGCAAGTGGATTTTGAT 60.068 47.619 3.37 0.00 0.00 2.57
318 319 1.067706 TGCCGCAAGTGGATTTTGATG 60.068 47.619 3.37 0.00 0.00 3.07
319 320 1.736696 GCCGCAAGTGGATTTTGATGG 60.737 52.381 3.37 0.00 0.00 3.51
320 321 1.545582 CCGCAAGTGGATTTTGATGGT 59.454 47.619 0.00 0.00 0.00 3.55
321 322 2.598589 CGCAAGTGGATTTTGATGGTG 58.401 47.619 0.00 0.00 0.00 4.17
322 323 2.671914 CGCAAGTGGATTTTGATGGTGG 60.672 50.000 0.00 0.00 0.00 4.61
323 324 2.299867 GCAAGTGGATTTTGATGGTGGT 59.700 45.455 0.00 0.00 0.00 4.16
324 325 3.861886 GCAAGTGGATTTTGATGGTGGTG 60.862 47.826 0.00 0.00 0.00 4.17
325 326 3.243359 AGTGGATTTTGATGGTGGTGT 57.757 42.857 0.00 0.00 0.00 4.16
326 327 3.157087 AGTGGATTTTGATGGTGGTGTC 58.843 45.455 0.00 0.00 0.00 3.67
327 328 3.157087 GTGGATTTTGATGGTGGTGTCT 58.843 45.455 0.00 0.00 0.00 3.41
328 329 3.191371 GTGGATTTTGATGGTGGTGTCTC 59.809 47.826 0.00 0.00 0.00 3.36
329 330 2.755103 GGATTTTGATGGTGGTGTCTCC 59.245 50.000 0.00 0.00 0.00 3.71
330 331 1.890876 TTTTGATGGTGGTGTCTCCG 58.109 50.000 0.00 0.00 39.52 4.63
331 332 0.036164 TTTGATGGTGGTGTCTCCGG 59.964 55.000 0.00 0.00 39.52 5.14
332 333 1.125093 TTGATGGTGGTGTCTCCGGT 61.125 55.000 0.00 0.00 39.52 5.28
333 334 1.079127 GATGGTGGTGTCTCCGGTG 60.079 63.158 0.00 0.00 39.52 4.94
334 335 1.535444 ATGGTGGTGTCTCCGGTGA 60.535 57.895 0.00 0.06 39.52 4.02
335 336 1.544825 ATGGTGGTGTCTCCGGTGAG 61.545 60.000 6.43 0.00 40.17 3.51
336 337 2.048127 GTGGTGTCTCCGGTGAGC 60.048 66.667 6.43 3.06 38.58 4.26
337 338 2.523168 TGGTGTCTCCGGTGAGCA 60.523 61.111 6.43 5.65 38.58 4.26
338 339 2.262915 GGTGTCTCCGGTGAGCAG 59.737 66.667 6.43 0.00 38.58 4.24
339 340 2.433318 GTGTCTCCGGTGAGCAGC 60.433 66.667 6.43 0.00 38.58 5.25
340 341 2.917227 TGTCTCCGGTGAGCAGCA 60.917 61.111 6.43 0.00 38.58 4.41
341 342 2.125753 GTCTCCGGTGAGCAGCAG 60.126 66.667 6.43 0.00 38.58 4.24
342 343 2.601666 TCTCCGGTGAGCAGCAGT 60.602 61.111 0.00 0.00 38.58 4.40
343 344 2.433838 CTCCGGTGAGCAGCAGTG 60.434 66.667 0.00 0.00 0.00 3.66
344 345 3.947132 CTCCGGTGAGCAGCAGTGG 62.947 68.421 0.00 0.00 0.00 4.00
345 346 4.320456 CCGGTGAGCAGCAGTGGT 62.320 66.667 0.00 0.00 37.01 4.16
346 347 3.046087 CGGTGAGCAGCAGTGGTG 61.046 66.667 18.01 18.01 33.41 4.17
347 348 2.670934 GGTGAGCAGCAGTGGTGG 60.671 66.667 22.98 5.99 33.41 4.61
348 349 3.360340 GTGAGCAGCAGTGGTGGC 61.360 66.667 22.98 14.98 33.41 5.01
349 350 4.648626 TGAGCAGCAGTGGTGGCC 62.649 66.667 22.98 8.05 33.41 5.36
350 351 4.648626 GAGCAGCAGTGGTGGCCA 62.649 66.667 22.98 0.00 33.41 5.36
358 359 4.705746 GTGGTGGCCACGACATAA 57.294 55.556 37.23 14.51 44.95 1.90
359 360 3.168773 GTGGTGGCCACGACATAAT 57.831 52.632 37.23 0.00 44.95 1.28
360 361 2.319136 GTGGTGGCCACGACATAATA 57.681 50.000 37.23 12.14 44.95 0.98
361 362 1.937899 GTGGTGGCCACGACATAATAC 59.062 52.381 37.23 18.80 44.95 1.89
362 363 1.834896 TGGTGGCCACGACATAATACT 59.165 47.619 29.08 0.00 0.00 2.12
363 364 3.032459 TGGTGGCCACGACATAATACTA 58.968 45.455 29.08 0.00 0.00 1.82
364 365 3.644265 TGGTGGCCACGACATAATACTAT 59.356 43.478 29.08 0.00 0.00 2.12
365 366 4.243270 GGTGGCCACGACATAATACTATC 58.757 47.826 29.08 6.52 0.00 2.08
366 367 3.918591 GTGGCCACGACATAATACTATCG 59.081 47.826 22.49 0.00 40.39 2.92
367 368 3.822167 TGGCCACGACATAATACTATCGA 59.178 43.478 0.00 0.00 37.97 3.59
368 369 4.082949 TGGCCACGACATAATACTATCGAG 60.083 45.833 0.00 0.00 37.97 4.04
369 370 3.852536 GCCACGACATAATACTATCGAGC 59.147 47.826 0.00 0.00 37.97 5.03
370 371 4.413087 CCACGACATAATACTATCGAGCC 58.587 47.826 0.00 0.00 37.97 4.70
371 372 4.082949 CCACGACATAATACTATCGAGCCA 60.083 45.833 0.00 0.00 37.97 4.75
372 373 4.852104 CACGACATAATACTATCGAGCCAC 59.148 45.833 0.00 0.00 37.97 5.01
373 374 4.082895 ACGACATAATACTATCGAGCCACC 60.083 45.833 0.00 0.00 37.97 4.61
374 375 4.413087 GACATAATACTATCGAGCCACCG 58.587 47.826 0.00 0.00 0.00 4.94
375 376 3.179830 CATAATACTATCGAGCCACCGC 58.820 50.000 0.00 0.00 0.00 5.68
376 377 0.317479 AATACTATCGAGCCACCGCC 59.683 55.000 0.00 0.00 34.57 6.13
377 378 0.539901 ATACTATCGAGCCACCGCCT 60.540 55.000 0.00 0.00 34.57 5.52
378 379 0.109153 TACTATCGAGCCACCGCCTA 59.891 55.000 0.00 0.00 34.57 3.93
379 380 1.173444 ACTATCGAGCCACCGCCTAG 61.173 60.000 0.00 0.00 34.57 3.02
380 381 2.479412 CTATCGAGCCACCGCCTAGC 62.479 65.000 0.00 0.00 34.57 3.42
381 382 2.978298 TATCGAGCCACCGCCTAGCT 62.978 60.000 0.00 0.00 40.24 3.32
382 383 4.148825 CGAGCCACCGCCTAGCTT 62.149 66.667 0.00 0.00 36.87 3.74
383 384 2.512515 GAGCCACCGCCTAGCTTG 60.513 66.667 0.00 0.00 36.87 4.01
384 385 4.785453 AGCCACCGCCTAGCTTGC 62.785 66.667 0.00 0.00 31.27 4.01
385 386 4.785453 GCCACCGCCTAGCTTGCT 62.785 66.667 0.00 0.00 0.00 3.91
386 387 2.512515 CCACCGCCTAGCTTGCTC 60.513 66.667 0.00 0.00 0.00 4.26
387 388 2.512515 CACCGCCTAGCTTGCTCC 60.513 66.667 0.00 0.00 0.00 4.70
388 389 3.003173 ACCGCCTAGCTTGCTCCA 61.003 61.111 0.00 0.00 0.00 3.86
389 390 2.202987 CCGCCTAGCTTGCTCCAG 60.203 66.667 0.00 0.00 0.00 3.86
390 391 2.581354 CGCCTAGCTTGCTCCAGT 59.419 61.111 0.00 0.00 0.00 4.00
391 392 1.078848 CGCCTAGCTTGCTCCAGTT 60.079 57.895 0.00 0.00 0.00 3.16
392 393 1.364626 CGCCTAGCTTGCTCCAGTTG 61.365 60.000 0.00 0.00 0.00 3.16
393 394 1.652167 GCCTAGCTTGCTCCAGTTGC 61.652 60.000 0.00 0.00 0.00 4.17
394 395 0.321919 CCTAGCTTGCTCCAGTTGCA 60.322 55.000 0.00 0.00 38.80 4.08
395 396 1.085091 CTAGCTTGCTCCAGTTGCAG 58.915 55.000 0.00 0.00 41.71 4.41
396 397 0.686789 TAGCTTGCTCCAGTTGCAGA 59.313 50.000 0.00 0.00 41.71 4.26
397 398 0.888285 AGCTTGCTCCAGTTGCAGAC 60.888 55.000 0.00 0.00 41.71 3.51
398 399 1.168407 GCTTGCTCCAGTTGCAGACA 61.168 55.000 0.00 0.00 41.71 3.41
399 400 1.311859 CTTGCTCCAGTTGCAGACAA 58.688 50.000 0.00 0.00 41.71 3.18
400 401 1.677576 CTTGCTCCAGTTGCAGACAAA 59.322 47.619 0.00 0.00 41.71 2.83
401 402 1.761449 TGCTCCAGTTGCAGACAAAA 58.239 45.000 0.00 0.00 37.58 2.44
402 403 1.677576 TGCTCCAGTTGCAGACAAAAG 59.322 47.619 0.00 0.00 37.58 2.27
403 404 1.000938 GCTCCAGTTGCAGACAAAAGG 60.001 52.381 0.00 0.00 37.58 3.11
404 405 2.575532 CTCCAGTTGCAGACAAAAGGA 58.424 47.619 0.00 0.00 38.17 3.36
405 406 2.291741 CTCCAGTTGCAGACAAAAGGAC 59.708 50.000 0.00 0.00 36.56 3.85
406 407 2.023673 CCAGTTGCAGACAAAAGGACA 58.976 47.619 0.00 0.00 37.58 4.02
407 408 2.426738 CCAGTTGCAGACAAAAGGACAA 59.573 45.455 0.00 0.00 37.58 3.18
408 409 3.119173 CCAGTTGCAGACAAAAGGACAAA 60.119 43.478 0.00 0.00 37.58 2.83
409 410 3.859386 CAGTTGCAGACAAAAGGACAAAC 59.141 43.478 0.00 0.00 37.58 2.93
410 411 2.842208 TGCAGACAAAAGGACAAACG 57.158 45.000 0.00 0.00 0.00 3.60
411 412 2.360844 TGCAGACAAAAGGACAAACGA 58.639 42.857 0.00 0.00 0.00 3.85
412 413 2.948979 TGCAGACAAAAGGACAAACGAT 59.051 40.909 0.00 0.00 0.00 3.73
413 414 3.243035 TGCAGACAAAAGGACAAACGATG 60.243 43.478 0.00 0.00 0.00 3.84
414 415 3.853307 GCAGACAAAAGGACAAACGATGG 60.853 47.826 0.00 0.00 0.00 3.51
415 416 3.563808 CAGACAAAAGGACAAACGATGGA 59.436 43.478 0.00 0.00 0.00 3.41
416 417 3.564225 AGACAAAAGGACAAACGATGGAC 59.436 43.478 0.00 0.00 0.00 4.02
418 419 0.872388 AAAGGACAAACGATGGACGC 59.128 50.000 0.00 0.00 46.94 5.19
419 420 0.250124 AAGGACAAACGATGGACGCA 60.250 50.000 0.00 0.00 46.94 5.24
420 421 0.250124 AGGACAAACGATGGACGCAA 60.250 50.000 0.00 0.00 46.94 4.85
421 422 0.110373 GGACAAACGATGGACGCAAC 60.110 55.000 0.00 0.00 46.94 4.17
422 423 0.584396 GACAAACGATGGACGCAACA 59.416 50.000 0.00 0.00 46.94 3.33
423 424 0.586319 ACAAACGATGGACGCAACAG 59.414 50.000 0.00 0.00 46.94 3.16
424 425 0.586319 CAAACGATGGACGCAACAGT 59.414 50.000 0.00 0.00 46.94 3.55
425 426 0.865769 AAACGATGGACGCAACAGTC 59.134 50.000 0.00 0.00 46.94 3.51
426 427 0.033504 AACGATGGACGCAACAGTCT 59.966 50.000 0.00 0.00 46.94 3.24
427 428 0.033504 ACGATGGACGCAACAGTCTT 59.966 50.000 0.00 0.00 46.94 3.01
428 429 1.148310 CGATGGACGCAACAGTCTTT 58.852 50.000 0.00 0.00 40.76 2.52
429 430 1.531149 CGATGGACGCAACAGTCTTTT 59.469 47.619 0.00 0.00 40.76 2.27
430 431 2.662791 CGATGGACGCAACAGTCTTTTG 60.663 50.000 0.00 0.00 40.76 2.44
431 432 2.031258 TGGACGCAACAGTCTTTTGA 57.969 45.000 2.83 0.00 40.76 2.69
432 433 2.360844 TGGACGCAACAGTCTTTTGAA 58.639 42.857 2.83 0.00 40.76 2.69
433 434 2.750166 TGGACGCAACAGTCTTTTGAAA 59.250 40.909 2.83 0.00 40.76 2.69
434 435 3.181501 TGGACGCAACAGTCTTTTGAAAG 60.182 43.478 2.83 0.00 40.76 2.62
435 436 3.064820 GGACGCAACAGTCTTTTGAAAGA 59.935 43.478 2.83 2.16 42.41 2.52
449 450 8.010733 TCTTTTGAAAGACAATGGTTTCATCT 57.989 30.769 11.97 0.00 41.20 2.90
450 451 7.922278 TCTTTTGAAAGACAATGGTTTCATCTG 59.078 33.333 11.97 7.02 41.20 2.90
451 452 6.713762 TTGAAAGACAATGGTTTCATCTGT 57.286 33.333 11.97 0.00 41.20 3.41
452 453 7.815840 TTGAAAGACAATGGTTTCATCTGTA 57.184 32.000 11.97 0.00 41.20 2.74
453 454 7.439157 TGAAAGACAATGGTTTCATCTGTAG 57.561 36.000 8.40 0.00 37.67 2.74
454 455 7.223584 TGAAAGACAATGGTTTCATCTGTAGA 58.776 34.615 8.40 0.00 37.67 2.59
455 456 7.884877 TGAAAGACAATGGTTTCATCTGTAGAT 59.115 33.333 8.40 0.00 37.67 1.98
456 457 8.641498 AAAGACAATGGTTTCATCTGTAGATT 57.359 30.769 0.00 0.00 32.24 2.40
457 458 9.739276 AAAGACAATGGTTTCATCTGTAGATTA 57.261 29.630 0.00 0.00 32.24 1.75
458 459 9.911788 AAGACAATGGTTTCATCTGTAGATTAT 57.088 29.630 0.00 0.00 32.24 1.28
459 460 9.553064 AGACAATGGTTTCATCTGTAGATTATC 57.447 33.333 0.00 0.00 32.24 1.75
460 461 9.330063 GACAATGGTTTCATCTGTAGATTATCA 57.670 33.333 0.00 0.00 32.24 2.15
461 462 9.113838 ACAATGGTTTCATCTGTAGATTATCAC 57.886 33.333 0.00 0.00 32.24 3.06
462 463 8.562892 CAATGGTTTCATCTGTAGATTATCACC 58.437 37.037 0.00 0.00 32.24 4.02
463 464 7.437713 TGGTTTCATCTGTAGATTATCACCT 57.562 36.000 0.00 0.00 31.21 4.00
464 465 7.861629 TGGTTTCATCTGTAGATTATCACCTT 58.138 34.615 0.00 0.00 31.21 3.50
465 466 8.328758 TGGTTTCATCTGTAGATTATCACCTTT 58.671 33.333 0.00 0.00 31.21 3.11
466 467 8.831550 GGTTTCATCTGTAGATTATCACCTTTC 58.168 37.037 0.00 0.00 31.21 2.62
467 468 8.831550 GTTTCATCTGTAGATTATCACCTTTCC 58.168 37.037 0.00 0.00 31.21 3.13
468 469 6.749139 TCATCTGTAGATTATCACCTTTCCG 58.251 40.000 0.00 0.00 31.21 4.30
469 470 4.945246 TCTGTAGATTATCACCTTTCCGC 58.055 43.478 0.00 0.00 0.00 5.54
470 471 4.404394 TCTGTAGATTATCACCTTTCCGCA 59.596 41.667 0.00 0.00 0.00 5.69
471 472 5.070446 TCTGTAGATTATCACCTTTCCGCAT 59.930 40.000 0.00 0.00 0.00 4.73
472 473 5.056480 TGTAGATTATCACCTTTCCGCATG 58.944 41.667 0.00 0.00 0.00 4.06
473 474 4.156455 AGATTATCACCTTTCCGCATGT 57.844 40.909 0.00 0.00 0.00 3.21
474 475 5.290493 AGATTATCACCTTTCCGCATGTA 57.710 39.130 0.00 0.00 0.00 2.29
475 476 5.680619 AGATTATCACCTTTCCGCATGTAA 58.319 37.500 0.00 0.00 0.00 2.41
476 477 6.299141 AGATTATCACCTTTCCGCATGTAAT 58.701 36.000 0.00 0.00 0.00 1.89
477 478 6.428159 AGATTATCACCTTTCCGCATGTAATC 59.572 38.462 0.00 0.00 0.00 1.75
478 479 2.276201 TCACCTTTCCGCATGTAATCG 58.724 47.619 0.00 0.00 0.00 3.34
479 480 1.330521 CACCTTTCCGCATGTAATCGG 59.669 52.381 3.35 3.35 46.52 4.18
480 481 0.307760 CCTTTCCGCATGTAATCGGC 59.692 55.000 4.77 0.00 44.91 5.54
481 482 0.307760 CTTTCCGCATGTAATCGGCC 59.692 55.000 4.77 0.00 44.91 6.13
482 483 0.107410 TTTCCGCATGTAATCGGCCT 60.107 50.000 0.00 0.00 44.91 5.19
483 484 0.813610 TTCCGCATGTAATCGGCCTG 60.814 55.000 0.00 0.00 44.91 4.85
484 485 1.523711 CCGCATGTAATCGGCCTGT 60.524 57.895 0.00 0.00 39.14 4.00
485 486 0.249699 CCGCATGTAATCGGCCTGTA 60.250 55.000 0.00 0.00 39.14 2.74
486 487 0.859232 CGCATGTAATCGGCCTGTAC 59.141 55.000 0.00 0.46 0.00 2.90
487 488 1.538204 CGCATGTAATCGGCCTGTACT 60.538 52.381 0.00 0.00 0.00 2.73
488 489 2.561569 GCATGTAATCGGCCTGTACTT 58.438 47.619 0.00 0.00 0.00 2.24
489 490 2.287915 GCATGTAATCGGCCTGTACTTG 59.712 50.000 0.00 9.55 0.00 3.16
490 491 3.792401 CATGTAATCGGCCTGTACTTGA 58.208 45.455 0.00 0.00 0.00 3.02
491 492 4.380531 CATGTAATCGGCCTGTACTTGAT 58.619 43.478 0.00 0.00 0.00 2.57
492 493 5.538118 CATGTAATCGGCCTGTACTTGATA 58.462 41.667 0.00 0.00 0.00 2.15
493 494 4.940463 TGTAATCGGCCTGTACTTGATAC 58.060 43.478 0.00 0.00 0.00 2.24
494 495 4.647853 TGTAATCGGCCTGTACTTGATACT 59.352 41.667 0.00 0.00 34.56 2.12
495 496 4.323553 AATCGGCCTGTACTTGATACTC 57.676 45.455 0.00 0.00 34.56 2.59
496 497 2.730382 TCGGCCTGTACTTGATACTCA 58.270 47.619 0.00 0.00 34.56 3.41
497 498 3.296854 TCGGCCTGTACTTGATACTCAT 58.703 45.455 0.00 0.00 34.56 2.90
498 499 4.466827 TCGGCCTGTACTTGATACTCATA 58.533 43.478 0.00 0.00 34.56 2.15
499 500 4.519350 TCGGCCTGTACTTGATACTCATAG 59.481 45.833 0.00 0.00 34.56 2.23
500 501 4.561105 GGCCTGTACTTGATACTCATAGC 58.439 47.826 0.00 0.00 34.56 2.97
501 502 4.039245 GGCCTGTACTTGATACTCATAGCA 59.961 45.833 0.00 0.00 34.56 3.49
502 503 5.226396 GCCTGTACTTGATACTCATAGCAG 58.774 45.833 0.00 0.00 34.56 4.24
503 504 5.221342 GCCTGTACTTGATACTCATAGCAGT 60.221 44.000 0.00 0.00 34.56 4.40
504 505 6.016192 GCCTGTACTTGATACTCATAGCAGTA 60.016 42.308 0.00 0.00 34.56 2.74
505 506 7.589395 CCTGTACTTGATACTCATAGCAGTAG 58.411 42.308 0.00 0.00 32.28 2.57
506 507 7.229707 CCTGTACTTGATACTCATAGCAGTAGT 59.770 40.741 0.00 0.00 32.28 2.73
507 508 9.274206 CTGTACTTGATACTCATAGCAGTAGTA 57.726 37.037 0.00 0.00 32.28 1.82
508 509 9.274206 TGTACTTGATACTCATAGCAGTAGTAG 57.726 37.037 0.00 0.00 32.28 2.57
509 510 9.275398 GTACTTGATACTCATAGCAGTAGTAGT 57.725 37.037 0.00 0.00 32.28 2.73
510 511 8.754991 ACTTGATACTCATAGCAGTAGTAGTT 57.245 34.615 0.00 0.00 32.28 2.24
511 512 9.191479 ACTTGATACTCATAGCAGTAGTAGTTT 57.809 33.333 0.00 0.00 32.28 2.66
512 513 9.672086 CTTGATACTCATAGCAGTAGTAGTTTC 57.328 37.037 0.00 0.00 32.28 2.78
513 514 7.862648 TGATACTCATAGCAGTAGTAGTTTCG 58.137 38.462 0.00 0.00 32.28 3.46
514 515 7.713942 TGATACTCATAGCAGTAGTAGTTTCGA 59.286 37.037 0.00 0.00 32.28 3.71
515 516 6.945938 ACTCATAGCAGTAGTAGTTTCGAT 57.054 37.500 0.00 0.00 0.00 3.59
516 517 6.961576 ACTCATAGCAGTAGTAGTTTCGATC 58.038 40.000 0.00 0.00 0.00 3.69
517 518 6.768861 ACTCATAGCAGTAGTAGTTTCGATCT 59.231 38.462 0.00 0.00 0.00 2.75
518 519 6.960468 TCATAGCAGTAGTAGTTTCGATCTG 58.040 40.000 0.00 0.00 0.00 2.90
519 520 4.640789 AGCAGTAGTAGTTTCGATCTGG 57.359 45.455 0.00 0.00 0.00 3.86
520 521 3.117046 GCAGTAGTAGTTTCGATCTGGC 58.883 50.000 0.00 0.00 0.00 4.85
521 522 3.428999 GCAGTAGTAGTTTCGATCTGGCA 60.429 47.826 0.00 0.00 0.00 4.92
522 523 4.106197 CAGTAGTAGTTTCGATCTGGCAC 58.894 47.826 0.00 0.00 0.00 5.01
523 524 2.279582 AGTAGTTTCGATCTGGCACG 57.720 50.000 0.00 0.00 0.00 5.34
524 525 1.135083 AGTAGTTTCGATCTGGCACGG 60.135 52.381 0.00 0.00 0.00 4.94
525 526 0.174845 TAGTTTCGATCTGGCACGGG 59.825 55.000 0.00 0.00 33.92 5.28
526 527 2.106683 GTTTCGATCTGGCACGGGG 61.107 63.158 0.00 0.00 33.92 5.73
527 528 3.969250 TTTCGATCTGGCACGGGGC 62.969 63.158 3.20 3.20 43.74 5.80
536 537 3.434319 GCACGGGGCATGACACAG 61.434 66.667 0.00 0.00 43.97 3.66
537 538 2.347114 CACGGGGCATGACACAGA 59.653 61.111 0.00 0.00 0.00 3.41
538 539 2.034879 CACGGGGCATGACACAGAC 61.035 63.158 0.00 0.00 0.00 3.51
539 540 2.815211 CGGGGCATGACACAGACG 60.815 66.667 0.00 0.00 0.00 4.18
540 541 2.436646 GGGGCATGACACAGACGG 60.437 66.667 0.00 0.00 0.00 4.79
541 542 3.127533 GGGCATGACACAGACGGC 61.128 66.667 0.00 0.00 0.00 5.68
542 543 3.490759 GGCATGACACAGACGGCG 61.491 66.667 4.80 4.80 0.00 6.46
543 544 3.490759 GCATGACACAGACGGCGG 61.491 66.667 13.24 0.00 0.00 6.13
544 545 2.815211 CATGACACAGACGGCGGG 60.815 66.667 13.24 2.44 0.00 6.13
545 546 3.311110 ATGACACAGACGGCGGGT 61.311 61.111 13.24 3.19 0.00 5.28
546 547 3.296709 ATGACACAGACGGCGGGTC 62.297 63.158 13.24 8.32 46.45 4.46
560 561 4.329545 GGTCAACGGGGCAGCTCA 62.330 66.667 0.00 0.00 0.00 4.26
561 562 2.281484 GTCAACGGGGCAGCTCAA 60.281 61.111 0.00 0.00 0.00 3.02
562 563 2.032528 TCAACGGGGCAGCTCAAG 59.967 61.111 0.00 0.00 0.00 3.02
563 564 3.058160 CAACGGGGCAGCTCAAGG 61.058 66.667 0.00 0.00 0.00 3.61
564 565 4.351054 AACGGGGCAGCTCAAGGG 62.351 66.667 0.00 0.00 0.00 3.95
888 899 1.612395 CCTCTGCTCTGTCCCCTGTC 61.612 65.000 0.00 0.00 0.00 3.51
1289 1310 4.487714 TCTATGGATGTGTTGTTCCTCC 57.512 45.455 0.00 0.00 32.95 4.30
1335 1366 6.318396 GGTTTGTGTTGGTGGTAGTTAGTTTA 59.682 38.462 0.00 0.00 0.00 2.01
1623 1917 6.029492 TGAGGGGATTATCACAATTTGGAT 57.971 37.500 0.00 3.92 0.00 3.41
1761 2154 8.134202 TCCTGAATGTCTGTATCTTCAAGTTA 57.866 34.615 0.00 0.00 0.00 2.24
1848 2266 1.001641 GCTCAGTGGGTTGATGCCT 60.002 57.895 0.00 0.00 0.00 4.75
1900 2318 5.221521 TGGAGAAGATATGGGAGATGTTTCG 60.222 44.000 0.00 0.00 0.00 3.46
2139 2557 2.529632 TCAGCAAGGAGAAGCAGAGTA 58.470 47.619 0.00 0.00 0.00 2.59
2214 2632 6.059787 AGATGAAGTGCATTCTTAGGTCTT 57.940 37.500 0.00 0.00 37.34 3.01
2985 5675 7.094634 CCATAACAGTTCTCAAACTTAGCATGT 60.095 37.037 0.00 0.00 43.28 3.21
3090 5804 2.719798 CAGGCAGTTCAAAAGACAACG 58.280 47.619 0.00 0.00 0.00 4.10
3190 5905 1.361543 ACCCTACTGTTGCTCCCTCTA 59.638 52.381 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.515316 CTGTGTCAAGTCGCCGGGT 62.515 63.158 2.18 0.00 0.00 5.28
4 5 3.414700 GCTGTGTCAAGTCGCCGG 61.415 66.667 0.00 0.00 0.00 6.13
5 6 2.661537 TGCTGTGTCAAGTCGCCG 60.662 61.111 0.00 0.00 0.00 6.46
6 7 1.287730 CTCTGCTGTGTCAAGTCGCC 61.288 60.000 0.00 0.00 0.00 5.54
7 8 0.319040 TCTCTGCTGTGTCAAGTCGC 60.319 55.000 0.00 0.00 0.00 5.19
9 10 1.427435 GCTCTCTGCTGTGTCAAGTC 58.573 55.000 0.00 0.00 38.95 3.01
10 11 0.319383 CGCTCTCTGCTGTGTCAAGT 60.319 55.000 0.00 0.00 40.11 3.16
11 12 1.624865 GCGCTCTCTGCTGTGTCAAG 61.625 60.000 0.00 0.00 40.11 3.02
12 13 1.665916 GCGCTCTCTGCTGTGTCAA 60.666 57.895 0.00 0.00 40.11 3.18
13 14 2.048784 GCGCTCTCTGCTGTGTCA 60.049 61.111 0.00 0.00 40.11 3.58
14 15 2.261052 AGCGCTCTCTGCTGTGTC 59.739 61.111 2.64 0.00 42.14 3.67
51 52 4.821589 CACCTTCCTCGAGCCGCC 62.822 72.222 6.99 0.00 0.00 6.13
52 53 2.579684 AATCACCTTCCTCGAGCCGC 62.580 60.000 6.99 0.00 0.00 6.53
53 54 0.528684 GAATCACCTTCCTCGAGCCG 60.529 60.000 6.99 0.00 0.00 5.52
54 55 0.537188 TGAATCACCTTCCTCGAGCC 59.463 55.000 6.99 0.00 32.49 4.70
55 56 1.472376 CCTGAATCACCTTCCTCGAGC 60.472 57.143 6.99 0.00 32.49 5.03
56 57 1.137872 CCCTGAATCACCTTCCTCGAG 59.862 57.143 5.13 5.13 32.49 4.04
57 58 1.195115 CCCTGAATCACCTTCCTCGA 58.805 55.000 0.00 0.00 32.49 4.04
58 59 1.137872 CTCCCTGAATCACCTTCCTCG 59.862 57.143 0.00 0.00 32.49 4.63
59 60 2.169561 GTCTCCCTGAATCACCTTCCTC 59.830 54.545 0.00 0.00 32.49 3.71
60 61 2.192263 GTCTCCCTGAATCACCTTCCT 58.808 52.381 0.00 0.00 32.49 3.36
61 62 1.909302 TGTCTCCCTGAATCACCTTCC 59.091 52.381 0.00 0.00 32.49 3.46
62 63 2.675317 CGTGTCTCCCTGAATCACCTTC 60.675 54.545 0.00 0.00 0.00 3.46
63 64 1.276421 CGTGTCTCCCTGAATCACCTT 59.724 52.381 0.00 0.00 0.00 3.50
64 65 0.898320 CGTGTCTCCCTGAATCACCT 59.102 55.000 0.00 0.00 0.00 4.00
65 66 0.108138 CCGTGTCTCCCTGAATCACC 60.108 60.000 0.00 0.00 0.00 4.02
66 67 0.741221 GCCGTGTCTCCCTGAATCAC 60.741 60.000 0.00 0.00 0.00 3.06
67 68 1.191489 TGCCGTGTCTCCCTGAATCA 61.191 55.000 0.00 0.00 0.00 2.57
68 69 0.741221 GTGCCGTGTCTCCCTGAATC 60.741 60.000 0.00 0.00 0.00 2.52
69 70 1.296715 GTGCCGTGTCTCCCTGAAT 59.703 57.895 0.00 0.00 0.00 2.57
70 71 2.741092 GTGCCGTGTCTCCCTGAA 59.259 61.111 0.00 0.00 0.00 3.02
71 72 3.311110 GGTGCCGTGTCTCCCTGA 61.311 66.667 0.00 0.00 0.00 3.86
72 73 4.742201 CGGTGCCGTGTCTCCCTG 62.742 72.222 1.93 0.00 34.35 4.45
107 108 4.116328 TTCTCTGCGTCTCCGGCG 62.116 66.667 0.00 0.00 33.68 6.46
108 109 2.507324 GTTCTCTGCGTCTCCGGC 60.507 66.667 0.00 0.00 33.68 6.13
109 110 2.182030 GGTTCTCTGCGTCTCCGG 59.818 66.667 0.00 0.00 33.68 5.14
110 111 1.444553 GTGGTTCTCTGCGTCTCCG 60.445 63.158 0.00 0.00 37.07 4.63
111 112 0.389166 CTGTGGTTCTCTGCGTCTCC 60.389 60.000 0.00 0.00 0.00 3.71
112 113 0.315568 ACTGTGGTTCTCTGCGTCTC 59.684 55.000 0.00 0.00 0.00 3.36
113 114 0.753262 AACTGTGGTTCTCTGCGTCT 59.247 50.000 0.00 0.00 0.00 4.18
114 115 0.861837 CAACTGTGGTTCTCTGCGTC 59.138 55.000 0.00 0.00 32.73 5.19
115 116 1.160329 GCAACTGTGGTTCTCTGCGT 61.160 55.000 0.00 0.00 32.73 5.24
116 117 1.571460 GCAACTGTGGTTCTCTGCG 59.429 57.895 0.00 0.00 32.73 5.18
117 118 1.571460 CGCAACTGTGGTTCTCTGC 59.429 57.895 0.00 0.00 32.73 4.26
118 119 1.845809 GCCGCAACTGTGGTTCTCTG 61.846 60.000 10.85 0.00 46.99 3.35
119 120 1.598130 GCCGCAACTGTGGTTCTCT 60.598 57.895 10.85 0.00 46.99 3.10
120 121 2.946762 GCCGCAACTGTGGTTCTC 59.053 61.111 10.85 0.00 46.99 2.87
121 122 2.972505 CGCCGCAACTGTGGTTCT 60.973 61.111 10.85 0.00 46.99 3.01
122 123 4.025401 CCGCCGCAACTGTGGTTC 62.025 66.667 10.85 0.00 46.99 3.62
127 128 3.842925 AATGACCCGCCGCAACTGT 62.843 57.895 0.00 0.00 0.00 3.55
128 129 3.055719 AATGACCCGCCGCAACTG 61.056 61.111 0.00 0.00 0.00 3.16
129 130 3.055719 CAATGACCCGCCGCAACT 61.056 61.111 0.00 0.00 0.00 3.16
130 131 3.053291 TCAATGACCCGCCGCAAC 61.053 61.111 0.00 0.00 0.00 4.17
131 132 3.053291 GTCAATGACCCGCCGCAA 61.053 61.111 1.10 0.00 0.00 4.85
134 135 4.752879 ACCGTCAATGACCCGCCG 62.753 66.667 7.91 0.00 0.00 6.46
135 136 2.869503 ATCACCGTCAATGACCCGCC 62.870 60.000 7.91 0.00 0.00 6.13
136 137 1.024579 AATCACCGTCAATGACCCGC 61.025 55.000 7.91 0.00 0.00 6.13
137 138 0.726827 CAATCACCGTCAATGACCCG 59.273 55.000 7.91 0.70 0.00 5.28
138 139 2.107950 TCAATCACCGTCAATGACCC 57.892 50.000 7.91 0.00 0.00 4.46
139 140 2.355756 CCATCAATCACCGTCAATGACC 59.644 50.000 7.91 0.00 0.00 4.02
140 141 3.270027 TCCATCAATCACCGTCAATGAC 58.730 45.455 2.75 2.75 0.00 3.06
141 142 3.534554 CTCCATCAATCACCGTCAATGA 58.465 45.455 0.00 0.00 0.00 2.57
142 143 2.615447 CCTCCATCAATCACCGTCAATG 59.385 50.000 0.00 0.00 0.00 2.82
143 144 2.923121 CCTCCATCAATCACCGTCAAT 58.077 47.619 0.00 0.00 0.00 2.57
144 145 1.678728 GCCTCCATCAATCACCGTCAA 60.679 52.381 0.00 0.00 0.00 3.18
145 146 0.107703 GCCTCCATCAATCACCGTCA 60.108 55.000 0.00 0.00 0.00 4.35
146 147 0.815615 GGCCTCCATCAATCACCGTC 60.816 60.000 0.00 0.00 0.00 4.79
147 148 1.224592 GGCCTCCATCAATCACCGT 59.775 57.895 0.00 0.00 0.00 4.83
148 149 1.889105 CGGCCTCCATCAATCACCG 60.889 63.158 0.00 0.00 0.00 4.94
149 150 1.526917 CCGGCCTCCATCAATCACC 60.527 63.158 0.00 0.00 0.00 4.02
150 151 2.189499 GCCGGCCTCCATCAATCAC 61.189 63.158 18.11 0.00 0.00 3.06
151 152 2.192979 GCCGGCCTCCATCAATCA 59.807 61.111 18.11 0.00 0.00 2.57
152 153 2.940890 TTCGCCGGCCTCCATCAATC 62.941 60.000 23.46 0.00 0.00 2.67
153 154 2.550699 TTTCGCCGGCCTCCATCAAT 62.551 55.000 23.46 0.00 0.00 2.57
154 155 3.261039 TTTCGCCGGCCTCCATCAA 62.261 57.895 23.46 0.00 0.00 2.57
155 156 3.711814 TTTCGCCGGCCTCCATCA 61.712 61.111 23.46 0.00 0.00 3.07
156 157 3.202706 GTTTCGCCGGCCTCCATC 61.203 66.667 23.46 2.87 0.00 3.51
157 158 4.796495 GGTTTCGCCGGCCTCCAT 62.796 66.667 23.46 0.00 0.00 3.41
166 167 4.468689 CTCCCCTCCGGTTTCGCC 62.469 72.222 0.00 0.00 34.56 5.54
168 169 4.468689 GGCTCCCCTCCGGTTTCG 62.469 72.222 0.00 0.00 0.00 3.46
169 170 4.468689 CGGCTCCCCTCCGGTTTC 62.469 72.222 0.00 0.00 42.99 2.78
175 176 2.593956 AAGTCAACGGCTCCCCTCC 61.594 63.158 0.00 0.00 0.00 4.30
176 177 1.376037 CAAGTCAACGGCTCCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
177 178 2.750350 CAAGTCAACGGCTCCCCT 59.250 61.111 0.00 0.00 0.00 4.79
178 179 2.359975 CCAAGTCAACGGCTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
179 180 1.966451 CACCAAGTCAACGGCTCCC 60.966 63.158 0.00 0.00 0.00 4.30
180 181 1.966451 CCACCAAGTCAACGGCTCC 60.966 63.158 0.00 0.00 0.00 4.70
181 182 0.534203 TTCCACCAAGTCAACGGCTC 60.534 55.000 0.00 0.00 0.00 4.70
182 183 0.106918 TTTCCACCAAGTCAACGGCT 60.107 50.000 0.00 0.00 0.00 5.52
183 184 0.030235 GTTTCCACCAAGTCAACGGC 59.970 55.000 0.00 0.00 0.00 5.68
184 185 1.333619 CTGTTTCCACCAAGTCAACGG 59.666 52.381 0.00 0.00 0.00 4.44
185 186 1.333619 CCTGTTTCCACCAAGTCAACG 59.666 52.381 0.00 0.00 0.00 4.10
186 187 2.357952 GACCTGTTTCCACCAAGTCAAC 59.642 50.000 0.00 0.00 0.00 3.18
187 188 2.650322 GACCTGTTTCCACCAAGTCAA 58.350 47.619 0.00 0.00 0.00 3.18
188 189 1.133915 GGACCTGTTTCCACCAAGTCA 60.134 52.381 0.00 0.00 35.49 3.41
189 190 1.605753 GGACCTGTTTCCACCAAGTC 58.394 55.000 0.00 0.00 35.49 3.01
190 191 0.179029 CGGACCTGTTTCCACCAAGT 60.179 55.000 0.00 0.00 35.04 3.16
191 192 1.515521 GCGGACCTGTTTCCACCAAG 61.516 60.000 0.00 0.00 35.04 3.61
192 193 1.527380 GCGGACCTGTTTCCACCAA 60.527 57.895 0.00 0.00 35.04 3.67
193 194 2.112297 GCGGACCTGTTTCCACCA 59.888 61.111 0.00 0.00 35.04 4.17
194 195 1.966451 CTGCGGACCTGTTTCCACC 60.966 63.158 0.00 0.00 35.04 4.61
195 196 2.617274 GCTGCGGACCTGTTTCCAC 61.617 63.158 0.00 0.00 35.04 4.02
196 197 2.281484 GCTGCGGACCTGTTTCCA 60.281 61.111 0.00 0.00 35.04 3.53
197 198 3.423154 CGCTGCGGACCTGTTTCC 61.423 66.667 15.40 0.00 0.00 3.13
212 213 3.191539 CCTCTTCGAAGCTGCCGC 61.192 66.667 20.56 0.00 0.00 6.53
213 214 3.191539 GCCTCTTCGAAGCTGCCG 61.192 66.667 20.56 6.38 0.00 5.69
214 215 2.558554 TACGCCTCTTCGAAGCTGCC 62.559 60.000 20.56 7.46 0.00 4.85
215 216 0.736325 TTACGCCTCTTCGAAGCTGC 60.736 55.000 20.56 21.22 0.00 5.25
216 217 1.710013 TTTACGCCTCTTCGAAGCTG 58.290 50.000 20.56 13.92 0.00 4.24
217 218 2.067013 GTTTTACGCCTCTTCGAAGCT 58.933 47.619 20.56 3.21 0.00 3.74
218 219 1.201780 CGTTTTACGCCTCTTCGAAGC 60.202 52.381 20.56 9.04 33.65 3.86
219 220 2.090195 GTCGTTTTACGCCTCTTCGAAG 59.910 50.000 19.35 19.35 42.21 3.79
220 221 2.053627 GTCGTTTTACGCCTCTTCGAA 58.946 47.619 0.00 0.00 42.21 3.71
221 222 1.001487 TGTCGTTTTACGCCTCTTCGA 60.001 47.619 0.00 0.00 42.21 3.71
222 223 1.385743 CTGTCGTTTTACGCCTCTTCG 59.614 52.381 0.00 0.00 42.21 3.79
223 224 1.126296 GCTGTCGTTTTACGCCTCTTC 59.874 52.381 0.00 0.00 42.21 2.87
224 225 1.145803 GCTGTCGTTTTACGCCTCTT 58.854 50.000 0.00 0.00 42.21 2.85
225 226 0.317479 AGCTGTCGTTTTACGCCTCT 59.683 50.000 0.00 0.00 42.21 3.69
226 227 0.714439 GAGCTGTCGTTTTACGCCTC 59.286 55.000 0.00 0.00 42.21 4.70
227 228 0.032952 TGAGCTGTCGTTTTACGCCT 59.967 50.000 0.00 0.00 42.21 5.52
228 229 0.863144 TTGAGCTGTCGTTTTACGCC 59.137 50.000 0.00 0.00 42.21 5.68
229 230 2.495939 CATTGAGCTGTCGTTTTACGC 58.504 47.619 0.00 0.00 42.21 4.42
230 231 2.734606 TCCATTGAGCTGTCGTTTTACG 59.265 45.455 0.00 0.00 44.19 3.18
231 232 4.327854 CTCCATTGAGCTGTCGTTTTAC 57.672 45.455 0.00 0.00 0.00 2.01
243 244 0.815734 CTTTGCTGGGCTCCATTGAG 59.184 55.000 0.00 0.00 41.84 3.02
244 245 0.612732 CCTTTGCTGGGCTCCATTGA 60.613 55.000 0.00 0.00 30.82 2.57
245 246 0.612732 TCCTTTGCTGGGCTCCATTG 60.613 55.000 0.00 0.00 30.82 2.82
246 247 0.114954 TTCCTTTGCTGGGCTCCATT 59.885 50.000 0.00 0.00 30.82 3.16
247 248 0.114954 TTTCCTTTGCTGGGCTCCAT 59.885 50.000 0.00 0.00 30.82 3.41
248 249 0.540365 CTTTCCTTTGCTGGGCTCCA 60.540 55.000 0.00 0.00 0.00 3.86
249 250 1.881903 GCTTTCCTTTGCTGGGCTCC 61.882 60.000 0.00 0.00 0.00 4.70
250 251 1.181098 TGCTTTCCTTTGCTGGGCTC 61.181 55.000 0.00 0.00 0.00 4.70
251 252 1.152483 TGCTTTCCTTTGCTGGGCT 60.152 52.632 0.00 0.00 0.00 5.19
252 253 1.005748 GTGCTTTCCTTTGCTGGGC 60.006 57.895 0.00 0.00 0.00 5.36
253 254 1.286880 CGTGCTTTCCTTTGCTGGG 59.713 57.895 0.00 0.00 0.00 4.45
254 255 1.286880 CCGTGCTTTCCTTTGCTGG 59.713 57.895 0.00 0.00 0.00 4.85
255 256 1.372128 GCCGTGCTTTCCTTTGCTG 60.372 57.895 0.00 0.00 0.00 4.41
256 257 1.529244 AGCCGTGCTTTCCTTTGCT 60.529 52.632 0.00 0.00 33.89 3.91
257 258 1.372128 CAGCCGTGCTTTCCTTTGC 60.372 57.895 0.00 0.00 36.40 3.68
258 259 4.950744 CAGCCGTGCTTTCCTTTG 57.049 55.556 0.00 0.00 36.40 2.77
276 277 3.070018 CCAAGTCCTTACTGCAGAGTTG 58.930 50.000 23.35 16.06 39.56 3.16
277 278 2.706190 ACCAAGTCCTTACTGCAGAGTT 59.294 45.455 23.35 3.73 35.62 3.01
278 279 2.037772 CACCAAGTCCTTACTGCAGAGT 59.962 50.000 23.35 1.38 35.62 3.24
279 280 2.693069 CACCAAGTCCTTACTGCAGAG 58.307 52.381 23.35 8.22 35.62 3.35
280 281 1.270839 GCACCAAGTCCTTACTGCAGA 60.271 52.381 23.35 0.48 35.62 4.26
281 282 1.160137 GCACCAAGTCCTTACTGCAG 58.840 55.000 13.48 13.48 35.62 4.41
282 283 0.250727 GGCACCAAGTCCTTACTGCA 60.251 55.000 9.21 0.00 35.62 4.41
283 284 1.298859 CGGCACCAAGTCCTTACTGC 61.299 60.000 0.00 1.32 35.62 4.40
284 285 1.298859 GCGGCACCAAGTCCTTACTG 61.299 60.000 0.00 0.00 35.62 2.74
285 286 1.003718 GCGGCACCAAGTCCTTACT 60.004 57.895 0.00 0.00 37.65 2.24
286 287 0.887387 TTGCGGCACCAAGTCCTTAC 60.887 55.000 0.05 0.00 0.00 2.34
287 288 0.605319 CTTGCGGCACCAAGTCCTTA 60.605 55.000 0.05 0.00 37.89 2.69
288 289 1.898574 CTTGCGGCACCAAGTCCTT 60.899 57.895 0.05 0.00 37.89 3.36
289 290 2.281761 CTTGCGGCACCAAGTCCT 60.282 61.111 0.05 0.00 37.89 3.85
293 294 1.526575 AATCCACTTGCGGCACCAAG 61.527 55.000 0.05 12.42 45.90 3.61
294 295 1.112315 AAATCCACTTGCGGCACCAA 61.112 50.000 0.05 0.00 0.00 3.67
295 296 1.112315 AAAATCCACTTGCGGCACCA 61.112 50.000 0.05 0.00 0.00 4.17
296 297 0.667184 CAAAATCCACTTGCGGCACC 60.667 55.000 0.05 0.00 0.00 5.01
297 298 0.313672 TCAAAATCCACTTGCGGCAC 59.686 50.000 0.05 0.00 0.00 5.01
298 299 1.067706 CATCAAAATCCACTTGCGGCA 60.068 47.619 0.00 0.00 0.00 5.69
299 300 1.632422 CATCAAAATCCACTTGCGGC 58.368 50.000 0.00 0.00 0.00 6.53
300 301 1.545582 ACCATCAAAATCCACTTGCGG 59.454 47.619 0.00 0.00 0.00 5.69
301 302 2.598589 CACCATCAAAATCCACTTGCG 58.401 47.619 0.00 0.00 0.00 4.85
302 303 2.299867 ACCACCATCAAAATCCACTTGC 59.700 45.455 0.00 0.00 0.00 4.01
303 304 3.321682 ACACCACCATCAAAATCCACTTG 59.678 43.478 0.00 0.00 0.00 3.16
304 305 3.573967 GACACCACCATCAAAATCCACTT 59.426 43.478 0.00 0.00 0.00 3.16
305 306 3.157087 GACACCACCATCAAAATCCACT 58.843 45.455 0.00 0.00 0.00 4.00
306 307 3.157087 AGACACCACCATCAAAATCCAC 58.843 45.455 0.00 0.00 0.00 4.02
307 308 3.420893 GAGACACCACCATCAAAATCCA 58.579 45.455 0.00 0.00 0.00 3.41
308 309 2.755103 GGAGACACCACCATCAAAATCC 59.245 50.000 0.00 0.00 38.79 3.01
309 310 2.420022 CGGAGACACCACCATCAAAATC 59.580 50.000 0.00 0.00 38.90 2.17
310 311 2.436417 CGGAGACACCACCATCAAAAT 58.564 47.619 0.00 0.00 38.90 1.82
311 312 1.544537 CCGGAGACACCACCATCAAAA 60.545 52.381 0.00 0.00 38.90 2.44
312 313 0.036164 CCGGAGACACCACCATCAAA 59.964 55.000 0.00 0.00 38.90 2.69
313 314 1.125093 ACCGGAGACACCACCATCAA 61.125 55.000 9.46 0.00 38.90 2.57
314 315 1.535444 ACCGGAGACACCACCATCA 60.535 57.895 9.46 0.00 38.90 3.07
315 316 1.079127 CACCGGAGACACCACCATC 60.079 63.158 9.46 0.00 38.90 3.51
316 317 1.535444 TCACCGGAGACACCACCAT 60.535 57.895 9.46 0.00 38.90 3.55
317 318 2.123208 TCACCGGAGACACCACCA 60.123 61.111 9.46 0.00 38.90 4.17
318 319 2.657237 CTCACCGGAGACACCACC 59.343 66.667 9.46 0.00 44.26 4.61
319 320 2.048127 GCTCACCGGAGACACCAC 60.048 66.667 9.46 0.00 44.26 4.16
320 321 2.523168 TGCTCACCGGAGACACCA 60.523 61.111 9.46 0.00 44.26 4.17
321 322 2.262915 CTGCTCACCGGAGACACC 59.737 66.667 9.46 0.00 44.26 4.16
322 323 2.433318 GCTGCTCACCGGAGACAC 60.433 66.667 9.46 0.00 44.26 3.67
323 324 2.917227 TGCTGCTCACCGGAGACA 60.917 61.111 9.46 6.22 44.26 3.41
324 325 2.125753 CTGCTGCTCACCGGAGAC 60.126 66.667 9.46 1.10 44.26 3.36
325 326 2.601666 ACTGCTGCTCACCGGAGA 60.602 61.111 9.46 4.36 44.26 3.71
326 327 2.433838 CACTGCTGCTCACCGGAG 60.434 66.667 9.46 0.00 44.33 4.63
327 328 4.007644 CCACTGCTGCTCACCGGA 62.008 66.667 9.46 0.00 0.00 5.14
328 329 4.320456 ACCACTGCTGCTCACCGG 62.320 66.667 0.00 0.00 0.00 5.28
329 330 3.046087 CACCACTGCTGCTCACCG 61.046 66.667 0.00 0.00 0.00 4.94
330 331 2.670934 CCACCACTGCTGCTCACC 60.671 66.667 0.00 0.00 0.00 4.02
331 332 3.360340 GCCACCACTGCTGCTCAC 61.360 66.667 0.00 0.00 0.00 3.51
332 333 4.648626 GGCCACCACTGCTGCTCA 62.649 66.667 0.00 0.00 0.00 4.26
333 334 4.648626 TGGCCACCACTGCTGCTC 62.649 66.667 0.00 0.00 0.00 4.26
342 343 1.834896 AGTATTATGTCGTGGCCACCA 59.165 47.619 29.95 22.56 0.00 4.17
343 344 2.614829 AGTATTATGTCGTGGCCACC 57.385 50.000 29.95 17.38 0.00 4.61
344 345 3.918591 CGATAGTATTATGTCGTGGCCAC 59.081 47.826 26.78 26.78 0.00 5.01
345 346 3.822167 TCGATAGTATTATGTCGTGGCCA 59.178 43.478 0.00 0.00 35.57 5.36
346 347 4.413087 CTCGATAGTATTATGTCGTGGCC 58.587 47.826 0.00 0.00 35.57 5.36
347 348 3.852536 GCTCGATAGTATTATGTCGTGGC 59.147 47.826 0.00 0.00 35.57 5.01
348 349 4.082949 TGGCTCGATAGTATTATGTCGTGG 60.083 45.833 0.00 0.00 35.57 4.94
349 350 4.852104 GTGGCTCGATAGTATTATGTCGTG 59.148 45.833 0.00 0.00 35.57 4.35
350 351 4.082895 GGTGGCTCGATAGTATTATGTCGT 60.083 45.833 0.00 0.00 35.57 4.34
351 352 4.413087 GGTGGCTCGATAGTATTATGTCG 58.587 47.826 0.00 0.00 35.41 4.35
352 353 4.413087 CGGTGGCTCGATAGTATTATGTC 58.587 47.826 0.00 0.00 37.40 3.06
353 354 3.367087 GCGGTGGCTCGATAGTATTATGT 60.367 47.826 5.12 0.00 35.83 2.29
354 355 3.179830 GCGGTGGCTCGATAGTATTATG 58.820 50.000 5.12 0.00 35.83 1.90
355 356 2.165845 GGCGGTGGCTCGATAGTATTAT 59.834 50.000 5.12 0.00 39.81 1.28
356 357 1.542915 GGCGGTGGCTCGATAGTATTA 59.457 52.381 5.12 0.00 39.81 0.98
357 358 0.317479 GGCGGTGGCTCGATAGTATT 59.683 55.000 5.12 0.00 39.81 1.89
358 359 0.539901 AGGCGGTGGCTCGATAGTAT 60.540 55.000 5.12 0.00 39.81 2.12
359 360 0.109153 TAGGCGGTGGCTCGATAGTA 59.891 55.000 0.00 0.00 39.70 1.82
360 361 1.152819 TAGGCGGTGGCTCGATAGT 60.153 57.895 0.00 0.00 39.70 2.12
361 362 1.581954 CTAGGCGGTGGCTCGATAG 59.418 63.158 0.00 3.14 39.70 2.08
362 363 2.561956 GCTAGGCGGTGGCTCGATA 61.562 63.158 0.00 0.00 39.70 2.92
363 364 3.917760 GCTAGGCGGTGGCTCGAT 61.918 66.667 0.00 0.00 39.70 3.59
365 366 4.148825 AAGCTAGGCGGTGGCTCG 62.149 66.667 0.00 0.00 43.49 5.03
366 367 2.512515 CAAGCTAGGCGGTGGCTC 60.513 66.667 0.00 0.00 43.49 4.70
368 369 4.785453 AGCAAGCTAGGCGGTGGC 62.785 66.667 4.80 0.00 40.44 5.01
369 370 2.512515 GAGCAAGCTAGGCGGTGG 60.513 66.667 0.00 0.00 36.08 4.61
370 371 2.512515 GGAGCAAGCTAGGCGGTG 60.513 66.667 0.00 0.00 36.08 4.94
371 372 3.003173 TGGAGCAAGCTAGGCGGT 61.003 61.111 0.00 0.00 36.08 5.68
372 373 2.202987 CTGGAGCAAGCTAGGCGG 60.203 66.667 0.00 0.00 36.08 6.13
373 374 1.078848 AACTGGAGCAAGCTAGGCG 60.079 57.895 0.00 0.00 36.08 5.52
374 375 1.652167 GCAACTGGAGCAAGCTAGGC 61.652 60.000 2.18 2.18 0.00 3.93
375 376 0.321919 TGCAACTGGAGCAAGCTAGG 60.322 55.000 0.00 0.00 39.39 3.02
376 377 1.085091 CTGCAACTGGAGCAAGCTAG 58.915 55.000 0.00 0.00 42.17 3.42
377 378 0.686789 TCTGCAACTGGAGCAAGCTA 59.313 50.000 0.00 0.00 42.17 3.32
378 379 0.888285 GTCTGCAACTGGAGCAAGCT 60.888 55.000 0.00 0.00 42.17 3.74
379 380 1.168407 TGTCTGCAACTGGAGCAAGC 61.168 55.000 0.00 0.00 42.17 4.01
380 381 1.311859 TTGTCTGCAACTGGAGCAAG 58.688 50.000 0.00 0.00 42.17 4.01
381 382 1.761449 TTTGTCTGCAACTGGAGCAA 58.239 45.000 0.00 0.00 42.17 3.91
382 383 1.677576 CTTTTGTCTGCAACTGGAGCA 59.322 47.619 0.00 0.00 40.19 4.26
383 384 1.000938 CCTTTTGTCTGCAACTGGAGC 60.001 52.381 0.00 0.00 33.82 4.70
384 385 2.291741 GTCCTTTTGTCTGCAACTGGAG 59.708 50.000 0.00 0.00 37.10 3.86
385 386 2.297701 GTCCTTTTGTCTGCAACTGGA 58.702 47.619 0.00 0.00 35.38 3.86
386 387 2.023673 TGTCCTTTTGTCTGCAACTGG 58.976 47.619 0.00 0.00 33.82 4.00
387 388 3.781079 TTGTCCTTTTGTCTGCAACTG 57.219 42.857 0.00 0.00 33.82 3.16
388 389 3.427503 CGTTTGTCCTTTTGTCTGCAACT 60.428 43.478 0.00 0.00 33.82 3.16
389 390 2.851824 CGTTTGTCCTTTTGTCTGCAAC 59.148 45.455 0.00 0.00 33.82 4.17
390 391 2.750166 TCGTTTGTCCTTTTGTCTGCAA 59.250 40.909 0.00 0.00 0.00 4.08
391 392 2.360844 TCGTTTGTCCTTTTGTCTGCA 58.639 42.857 0.00 0.00 0.00 4.41
392 393 3.300009 CATCGTTTGTCCTTTTGTCTGC 58.700 45.455 0.00 0.00 0.00 4.26
393 394 3.563808 TCCATCGTTTGTCCTTTTGTCTG 59.436 43.478 0.00 0.00 0.00 3.51
394 395 3.564225 GTCCATCGTTTGTCCTTTTGTCT 59.436 43.478 0.00 0.00 0.00 3.41
395 396 3.606153 CGTCCATCGTTTGTCCTTTTGTC 60.606 47.826 0.00 0.00 34.52 3.18
396 397 2.289547 CGTCCATCGTTTGTCCTTTTGT 59.710 45.455 0.00 0.00 34.52 2.83
397 398 2.916111 CGTCCATCGTTTGTCCTTTTG 58.084 47.619 0.00 0.00 34.52 2.44
398 399 1.265905 GCGTCCATCGTTTGTCCTTTT 59.734 47.619 0.00 0.00 42.13 2.27
399 400 0.872388 GCGTCCATCGTTTGTCCTTT 59.128 50.000 0.00 0.00 42.13 3.11
400 401 0.250124 TGCGTCCATCGTTTGTCCTT 60.250 50.000 0.00 0.00 42.13 3.36
401 402 0.250124 TTGCGTCCATCGTTTGTCCT 60.250 50.000 0.00 0.00 42.13 3.85
402 403 0.110373 GTTGCGTCCATCGTTTGTCC 60.110 55.000 0.00 0.00 42.13 4.02
403 404 0.584396 TGTTGCGTCCATCGTTTGTC 59.416 50.000 0.00 0.00 42.13 3.18
404 405 0.586319 CTGTTGCGTCCATCGTTTGT 59.414 50.000 0.00 0.00 42.13 2.83
405 406 0.586319 ACTGTTGCGTCCATCGTTTG 59.414 50.000 0.00 0.00 42.13 2.93
406 407 0.865769 GACTGTTGCGTCCATCGTTT 59.134 50.000 0.00 0.00 42.13 3.60
407 408 0.033504 AGACTGTTGCGTCCATCGTT 59.966 50.000 0.00 0.00 42.13 3.85
408 409 0.033504 AAGACTGTTGCGTCCATCGT 59.966 50.000 0.00 0.00 42.13 3.73
409 410 1.148310 AAAGACTGTTGCGTCCATCG 58.852 50.000 0.00 0.00 43.12 3.84
410 411 2.548057 TCAAAAGACTGTTGCGTCCATC 59.452 45.455 0.00 0.00 34.46 3.51
411 412 2.571212 TCAAAAGACTGTTGCGTCCAT 58.429 42.857 0.00 0.00 34.46 3.41
412 413 2.031258 TCAAAAGACTGTTGCGTCCA 57.969 45.000 0.00 0.00 34.46 4.02
413 414 3.064820 TCTTTCAAAAGACTGTTGCGTCC 59.935 43.478 0.00 0.00 39.95 4.79
414 415 4.273005 TCTTTCAAAAGACTGTTGCGTC 57.727 40.909 0.00 0.00 39.95 5.19
424 425 7.922278 CAGATGAAACCATTGTCTTTCAAAAGA 59.078 33.333 1.06 1.06 42.41 2.52
425 426 7.707893 ACAGATGAAACCATTGTCTTTCAAAAG 59.292 33.333 9.55 0.00 39.28 2.27
426 427 7.555087 ACAGATGAAACCATTGTCTTTCAAAA 58.445 30.769 9.55 0.00 39.28 2.44
427 428 7.111247 ACAGATGAAACCATTGTCTTTCAAA 57.889 32.000 9.55 0.00 39.28 2.69
428 429 6.713762 ACAGATGAAACCATTGTCTTTCAA 57.286 33.333 9.55 0.00 39.28 2.69
429 430 7.223584 TCTACAGATGAAACCATTGTCTTTCA 58.776 34.615 8.43 8.43 39.95 2.69
430 431 7.672983 TCTACAGATGAAACCATTGTCTTTC 57.327 36.000 0.00 0.00 0.00 2.62
431 432 8.641498 AATCTACAGATGAAACCATTGTCTTT 57.359 30.769 0.00 0.00 34.49 2.52
432 433 9.911788 ATAATCTACAGATGAAACCATTGTCTT 57.088 29.630 0.00 0.00 34.49 3.01
433 434 9.553064 GATAATCTACAGATGAAACCATTGTCT 57.447 33.333 0.00 0.00 34.49 3.41
434 435 9.330063 TGATAATCTACAGATGAAACCATTGTC 57.670 33.333 0.00 0.00 34.49 3.18
435 436 9.113838 GTGATAATCTACAGATGAAACCATTGT 57.886 33.333 0.00 0.00 34.49 2.71
436 437 8.562892 GGTGATAATCTACAGATGAAACCATTG 58.437 37.037 6.83 0.00 34.49 2.82
437 438 8.497745 AGGTGATAATCTACAGATGAAACCATT 58.502 33.333 11.65 0.00 34.49 3.16
438 439 8.038862 AGGTGATAATCTACAGATGAAACCAT 57.961 34.615 11.65 0.00 34.49 3.55
439 440 7.437713 AGGTGATAATCTACAGATGAAACCA 57.562 36.000 11.65 0.00 34.49 3.67
440 441 8.738645 AAAGGTGATAATCTACAGATGAAACC 57.261 34.615 0.00 0.00 34.49 3.27
441 442 8.831550 GGAAAGGTGATAATCTACAGATGAAAC 58.168 37.037 0.00 0.00 34.49 2.78
442 443 7.710907 CGGAAAGGTGATAATCTACAGATGAAA 59.289 37.037 0.00 0.00 34.49 2.69
443 444 7.210174 CGGAAAGGTGATAATCTACAGATGAA 58.790 38.462 0.00 0.00 34.49 2.57
444 445 6.738731 GCGGAAAGGTGATAATCTACAGATGA 60.739 42.308 0.00 0.00 34.49 2.92
445 446 5.406780 GCGGAAAGGTGATAATCTACAGATG 59.593 44.000 0.00 0.00 34.49 2.90
446 447 5.070446 TGCGGAAAGGTGATAATCTACAGAT 59.930 40.000 0.00 0.00 36.07 2.90
447 448 4.404394 TGCGGAAAGGTGATAATCTACAGA 59.596 41.667 0.00 0.00 0.00 3.41
448 449 4.693283 TGCGGAAAGGTGATAATCTACAG 58.307 43.478 0.00 0.00 0.00 2.74
449 450 4.746535 TGCGGAAAGGTGATAATCTACA 57.253 40.909 0.00 0.00 0.00 2.74
450 451 5.057149 ACATGCGGAAAGGTGATAATCTAC 58.943 41.667 0.00 0.00 0.00 2.59
451 452 5.290493 ACATGCGGAAAGGTGATAATCTA 57.710 39.130 0.00 0.00 0.00 1.98
452 453 4.156455 ACATGCGGAAAGGTGATAATCT 57.844 40.909 0.00 0.00 0.00 2.40
453 454 6.560253 ATTACATGCGGAAAGGTGATAATC 57.440 37.500 0.00 0.00 0.00 1.75
454 455 5.179368 CGATTACATGCGGAAAGGTGATAAT 59.821 40.000 0.00 0.00 0.00 1.28
455 456 4.509970 CGATTACATGCGGAAAGGTGATAA 59.490 41.667 0.00 0.00 0.00 1.75
456 457 4.055360 CGATTACATGCGGAAAGGTGATA 58.945 43.478 0.00 0.00 0.00 2.15
457 458 2.872245 CGATTACATGCGGAAAGGTGAT 59.128 45.455 0.00 0.00 0.00 3.06
458 459 2.276201 CGATTACATGCGGAAAGGTGA 58.724 47.619 0.00 0.00 0.00 4.02
459 460 2.737467 CGATTACATGCGGAAAGGTG 57.263 50.000 0.00 0.00 0.00 4.00
467 468 0.859232 GTACAGGCCGATTACATGCG 59.141 55.000 0.00 0.00 0.00 4.73
468 469 2.240493 AGTACAGGCCGATTACATGC 57.760 50.000 12.32 0.00 0.00 4.06
469 470 3.792401 TCAAGTACAGGCCGATTACATG 58.208 45.455 12.32 10.72 0.00 3.21
470 471 4.689612 ATCAAGTACAGGCCGATTACAT 57.310 40.909 12.32 0.12 0.00 2.29
471 472 4.647853 AGTATCAAGTACAGGCCGATTACA 59.352 41.667 12.32 0.00 35.67 2.41
472 473 5.197682 AGTATCAAGTACAGGCCGATTAC 57.802 43.478 0.00 0.00 35.67 1.89
473 474 4.891168 TGAGTATCAAGTACAGGCCGATTA 59.109 41.667 0.00 0.00 45.97 1.75
474 475 3.704566 TGAGTATCAAGTACAGGCCGATT 59.295 43.478 0.00 0.00 45.97 3.34
475 476 3.296854 TGAGTATCAAGTACAGGCCGAT 58.703 45.455 0.00 0.00 45.97 4.18
476 477 2.730382 TGAGTATCAAGTACAGGCCGA 58.270 47.619 0.00 0.00 45.97 5.54
489 490 8.085720 TCGAAACTACTACTGCTATGAGTATC 57.914 38.462 0.00 0.00 0.00 2.24
490 491 8.624367 ATCGAAACTACTACTGCTATGAGTAT 57.376 34.615 0.00 0.00 0.00 2.12
491 492 7.932491 AGATCGAAACTACTACTGCTATGAGTA 59.068 37.037 0.00 0.00 0.00 2.59
492 493 6.768861 AGATCGAAACTACTACTGCTATGAGT 59.231 38.462 0.00 0.00 0.00 3.41
493 494 7.075121 CAGATCGAAACTACTACTGCTATGAG 58.925 42.308 0.00 0.00 0.00 2.90
494 495 6.017026 CCAGATCGAAACTACTACTGCTATGA 60.017 42.308 0.00 0.00 0.00 2.15
495 496 6.146216 CCAGATCGAAACTACTACTGCTATG 58.854 44.000 0.00 0.00 0.00 2.23
496 497 5.278561 GCCAGATCGAAACTACTACTGCTAT 60.279 44.000 0.00 0.00 0.00 2.97
497 498 4.036498 GCCAGATCGAAACTACTACTGCTA 59.964 45.833 0.00 0.00 0.00 3.49
498 499 3.181485 GCCAGATCGAAACTACTACTGCT 60.181 47.826 0.00 0.00 0.00 4.24
499 500 3.117046 GCCAGATCGAAACTACTACTGC 58.883 50.000 0.00 0.00 0.00 4.40
500 501 4.106197 GTGCCAGATCGAAACTACTACTG 58.894 47.826 0.00 0.00 0.00 2.74
501 502 3.181499 CGTGCCAGATCGAAACTACTACT 60.181 47.826 0.00 0.00 0.00 2.57
502 503 3.106672 CGTGCCAGATCGAAACTACTAC 58.893 50.000 0.00 0.00 0.00 2.73
503 504 2.098607 CCGTGCCAGATCGAAACTACTA 59.901 50.000 0.00 0.00 0.00 1.82
504 505 1.135083 CCGTGCCAGATCGAAACTACT 60.135 52.381 0.00 0.00 0.00 2.57
505 506 1.278238 CCGTGCCAGATCGAAACTAC 58.722 55.000 0.00 0.00 0.00 2.73
506 507 0.174845 CCCGTGCCAGATCGAAACTA 59.825 55.000 0.00 0.00 0.00 2.24
507 508 1.079127 CCCGTGCCAGATCGAAACT 60.079 57.895 0.00 0.00 0.00 2.66
508 509 2.106683 CCCCGTGCCAGATCGAAAC 61.107 63.158 0.00 0.00 0.00 2.78
509 510 2.267642 CCCCGTGCCAGATCGAAA 59.732 61.111 0.00 0.00 0.00 3.46
510 511 4.467084 GCCCCGTGCCAGATCGAA 62.467 66.667 0.00 0.00 0.00 3.71
512 513 4.552365 ATGCCCCGTGCCAGATCG 62.552 66.667 0.00 0.00 40.16 3.69
513 514 2.903855 CATGCCCCGTGCCAGATC 60.904 66.667 0.00 0.00 40.16 2.75
514 515 3.410628 TCATGCCCCGTGCCAGAT 61.411 61.111 0.00 0.00 40.16 2.90
515 516 4.408821 GTCATGCCCCGTGCCAGA 62.409 66.667 0.00 0.00 40.16 3.86
516 517 4.720902 TGTCATGCCCCGTGCCAG 62.721 66.667 0.00 0.00 40.16 4.85
519 520 3.434319 CTGTGTCATGCCCCGTGC 61.434 66.667 0.00 0.00 41.77 5.34
520 521 2.034879 GTCTGTGTCATGCCCCGTG 61.035 63.158 0.00 0.00 0.00 4.94
521 522 2.347490 GTCTGTGTCATGCCCCGT 59.653 61.111 0.00 0.00 0.00 5.28
522 523 2.815211 CGTCTGTGTCATGCCCCG 60.815 66.667 0.00 0.00 0.00 5.73
523 524 2.436646 CCGTCTGTGTCATGCCCC 60.437 66.667 0.00 0.00 0.00 5.80
524 525 3.127533 GCCGTCTGTGTCATGCCC 61.128 66.667 0.00 0.00 0.00 5.36
525 526 3.490759 CGCCGTCTGTGTCATGCC 61.491 66.667 0.00 0.00 0.00 4.40
526 527 3.490759 CCGCCGTCTGTGTCATGC 61.491 66.667 0.00 0.00 0.00 4.06
527 528 2.815211 CCCGCCGTCTGTGTCATG 60.815 66.667 0.00 0.00 0.00 3.07
528 529 3.296709 GACCCGCCGTCTGTGTCAT 62.297 63.158 0.00 0.00 38.57 3.06
529 530 3.986006 GACCCGCCGTCTGTGTCA 61.986 66.667 0.00 0.00 38.57 3.58
530 531 3.509137 TTGACCCGCCGTCTGTGTC 62.509 63.158 3.01 0.00 42.49 3.67
531 532 3.542676 TTGACCCGCCGTCTGTGT 61.543 61.111 3.01 0.00 42.49 3.72
532 533 3.041940 GTTGACCCGCCGTCTGTG 61.042 66.667 3.01 0.00 42.49 3.66
533 534 4.657824 CGTTGACCCGCCGTCTGT 62.658 66.667 3.01 0.00 42.49 3.41
543 544 3.842925 TTGAGCTGCCCCGTTGACC 62.843 63.158 0.00 0.00 0.00 4.02
544 545 2.281484 TTGAGCTGCCCCGTTGAC 60.281 61.111 0.00 0.00 0.00 3.18
545 546 2.032528 CTTGAGCTGCCCCGTTGA 59.967 61.111 0.00 0.00 0.00 3.18
546 547 3.058160 CCTTGAGCTGCCCCGTTG 61.058 66.667 0.00 0.00 0.00 4.10
547 548 4.351054 CCCTTGAGCTGCCCCGTT 62.351 66.667 0.00 0.00 0.00 4.44
565 566 2.874780 CTCGTTTCCTCGGACGCG 60.875 66.667 3.53 3.53 39.03 6.01
566 567 2.087009 CACTCGTTTCCTCGGACGC 61.087 63.158 0.00 0.00 39.03 5.19
567 568 0.039798 TTCACTCGTTTCCTCGGACG 60.040 55.000 0.00 0.00 40.43 4.79
568 569 2.365408 ATTCACTCGTTTCCTCGGAC 57.635 50.000 0.00 0.00 0.00 4.79
569 570 2.683968 CAATTCACTCGTTTCCTCGGA 58.316 47.619 0.00 0.00 0.00 4.55
570 571 1.128692 GCAATTCACTCGTTTCCTCGG 59.871 52.381 0.00 0.00 0.00 4.63
571 572 1.798223 TGCAATTCACTCGTTTCCTCG 59.202 47.619 0.00 0.00 0.00 4.63
572 573 3.896648 TTGCAATTCACTCGTTTCCTC 57.103 42.857 0.00 0.00 0.00 3.71
573 574 4.647424 TTTTGCAATTCACTCGTTTCCT 57.353 36.364 0.00 0.00 0.00 3.36
679 682 7.307692 GCAAACCGGTCATTTGTTTTTATTGAT 60.308 33.333 8.04 0.00 38.93 2.57
897 908 3.350612 CGGCGGCGAAAAACTCCA 61.351 61.111 29.19 0.00 0.00 3.86
1289 1310 4.181578 CCCTAGTTTGATAACACTGACCG 58.818 47.826 0.00 0.00 36.70 4.79
1335 1366 3.890756 TGACAGCAATTCCAAACATCTGT 59.109 39.130 0.00 0.00 36.19 3.41
1623 1917 8.372459 ACTACATTAGTTCATTCAGTACCACAA 58.628 33.333 0.00 0.00 34.86 3.33
1761 2154 3.281727 ACTGACATGTTTGGTCACTGT 57.718 42.857 0.00 0.00 40.16 3.55
1848 2266 3.650281 TTGCAGAATAGAAGGCCATGA 57.350 42.857 5.01 0.00 0.00 3.07
1900 2318 2.996249 TCTGCCATGATTCTCCTCAC 57.004 50.000 0.00 0.00 0.00 3.51
2139 2557 3.152341 CCTTCATCTTGCCAAAGTCAGT 58.848 45.455 0.00 0.00 34.78 3.41
2214 2632 4.232091 GTGTTCCTAATGATCTCCCCCTA 58.768 47.826 0.00 0.00 0.00 3.53
2872 5062 1.000171 CTTGAGCCCAAGCCTTGTTTC 60.000 52.381 3.37 0.00 42.72 2.78
2985 5675 6.509418 AGCTTGAGAACTTGTTTGTGTTAA 57.491 33.333 0.00 0.00 0.00 2.01
3090 5804 3.506067 ACTAGTTAGTGCACAATTTGGCC 59.494 43.478 21.04 0.00 34.72 5.36
3190 5905 1.916181 ACCTAGGGCTGCAACTACAAT 59.084 47.619 14.81 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.