Multiple sequence alignment - TraesCS1D01G252400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G252400 chr1D 100.000 3370 0 0 1 3370 344611203 344607834 0.000000e+00 6224
1 TraesCS1D01G252400 chr1D 96.231 451 14 2 199 647 243479830 243480279 0.000000e+00 736
2 TraesCS1D01G252400 chr1B 94.562 1931 75 19 752 2668 466071821 466073735 0.000000e+00 2957
3 TraesCS1D01G252400 chr1B 90.799 663 52 5 1468 2123 129376911 129376251 0.000000e+00 878
4 TraesCS1D01G252400 chr1B 92.737 358 20 5 2728 3081 466074108 466074463 2.320000e-141 512
5 TraesCS1D01G252400 chr1B 91.228 285 24 1 3087 3370 466074641 466074925 1.470000e-103 387
6 TraesCS1D01G252400 chr1B 89.130 230 24 1 1895 2124 562423778 562423550 5.500000e-73 285
7 TraesCS1D01G252400 chr1B 87.047 193 24 1 7 199 466071070 466071261 2.040000e-52 217
8 TraesCS1D01G252400 chr1A 94.311 1459 77 4 1914 3370 444145452 444143998 0.000000e+00 2230
9 TraesCS1D01G252400 chr1A 93.407 1274 52 12 643 1902 444147076 444145821 0.000000e+00 1858
10 TraesCS1D01G252400 chr1A 90.821 207 11 2 1 199 444147282 444147076 1.540000e-68 270
11 TraesCS1D01G252400 chr7D 97.545 448 10 1 199 645 126465213 126465660 0.000000e+00 765
12 TraesCS1D01G252400 chr7D 95.207 459 16 4 198 655 21265951 21265498 0.000000e+00 721
13 TraesCS1D01G252400 chr7B 89.280 625 45 6 1468 2072 29840138 29839516 0.000000e+00 763
14 TraesCS1D01G252400 chr7B 89.120 625 46 7 1468 2072 630868241 630868863 0.000000e+00 758
15 TraesCS1D01G252400 chr4D 89.297 626 42 10 1468 2072 505948527 505949148 0.000000e+00 761
16 TraesCS1D01G252400 chr4D 89.120 625 46 7 1468 2072 361165937 361166559 0.000000e+00 758
17 TraesCS1D01G252400 chr4D 88.800 625 48 7 1468 2072 361192379 361193001 0.000000e+00 747
18 TraesCS1D01G252400 chr4D 96.256 454 15 2 194 646 274544024 274544476 0.000000e+00 743
19 TraesCS1D01G252400 chr4D 96.652 448 12 2 198 643 398728369 398727923 0.000000e+00 741
20 TraesCS1D01G252400 chr5B 89.120 625 46 7 1468 2072 637024058 637023436 0.000000e+00 758
21 TraesCS1D01G252400 chr3D 96.429 448 14 2 198 644 561446225 561446671 0.000000e+00 737
22 TraesCS1D01G252400 chr3D 95.565 451 17 3 198 646 374726868 374726419 0.000000e+00 719
23 TraesCS1D01G252400 chr3D 94.889 450 21 2 195 644 424698217 424697770 0.000000e+00 702
24 TraesCS1D01G252400 chr3D 93.668 458 26 3 198 654 236666911 236667366 0.000000e+00 682
25 TraesCS1D01G252400 chr2B 87.520 625 49 14 1468 2073 52988229 52987615 0.000000e+00 695
26 TraesCS1D01G252400 chr6B 88.696 230 25 1 1895 2124 7165447 7165675 2.560000e-71 279
27 TraesCS1D01G252400 chr6B 88.261 230 26 1 1895 2124 7201958 7202186 1.190000e-69 274
28 TraesCS1D01G252400 chr6A 88.696 230 25 1 1895 2124 50541643 50541415 2.560000e-71 279
29 TraesCS1D01G252400 chr2A 88.261 230 25 2 1895 2124 497120081 497119854 1.190000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G252400 chr1D 344607834 344611203 3369 True 6224.000000 6224 100.000000 1 3370 1 chr1D.!!$R1 3369
1 TraesCS1D01G252400 chr1B 466071070 466074925 3855 False 1018.250000 2957 91.393500 7 3370 4 chr1B.!!$F1 3363
2 TraesCS1D01G252400 chr1B 129376251 129376911 660 True 878.000000 878 90.799000 1468 2123 1 chr1B.!!$R1 655
3 TraesCS1D01G252400 chr1A 444143998 444147282 3284 True 1452.666667 2230 92.846333 1 3370 3 chr1A.!!$R1 3369
4 TraesCS1D01G252400 chr7B 29839516 29840138 622 True 763.000000 763 89.280000 1468 2072 1 chr7B.!!$R1 604
5 TraesCS1D01G252400 chr7B 630868241 630868863 622 False 758.000000 758 89.120000 1468 2072 1 chr7B.!!$F1 604
6 TraesCS1D01G252400 chr4D 505948527 505949148 621 False 761.000000 761 89.297000 1468 2072 1 chr4D.!!$F4 604
7 TraesCS1D01G252400 chr4D 361165937 361166559 622 False 758.000000 758 89.120000 1468 2072 1 chr4D.!!$F2 604
8 TraesCS1D01G252400 chr4D 361192379 361193001 622 False 747.000000 747 88.800000 1468 2072 1 chr4D.!!$F3 604
9 TraesCS1D01G252400 chr5B 637023436 637024058 622 True 758.000000 758 89.120000 1468 2072 1 chr5B.!!$R1 604
10 TraesCS1D01G252400 chr2B 52987615 52988229 614 True 695.000000 695 87.520000 1468 2073 1 chr2B.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 347 0.036010 CCGCACCTCTCTCCACATTT 60.036 55.0 0.00 0.0 0.00 2.32 F
514 523 0.042731 CCCCACTCCTCCTCACCTTA 59.957 60.0 0.00 0.0 0.00 2.69 F
583 592 0.171007 CCGCATGGGTCAATCACAAC 59.829 55.0 9.14 0.0 31.12 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1748 0.031449 GCTCCTTCTCGATCTTCGGG 59.969 60.000 0.0 0.0 42.83 5.14 R
1553 2032 1.299976 GAGCCTCCAAATGTCCGGT 59.700 57.895 0.0 0.0 0.00 5.28 R
2482 3350 3.884895 TCTCCGTACTTCGTGGGTATAA 58.115 45.455 0.0 0.0 37.94 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.612620 GAAGTTGAAAAGTCGTGAAATTCATAT 57.387 29.630 0.00 0.00 30.81 1.78
118 127 5.596836 AGCTGGTGAACAAATTCTGAAAA 57.403 34.783 0.00 0.00 35.69 2.29
199 208 2.927477 TGACACGGCATTCGACTTTATC 59.073 45.455 0.00 0.00 42.43 1.75
200 209 3.187700 GACACGGCATTCGACTTTATCT 58.812 45.455 0.00 0.00 42.43 1.98
201 210 4.142337 TGACACGGCATTCGACTTTATCTA 60.142 41.667 0.00 0.00 42.43 1.98
202 211 4.945246 ACACGGCATTCGACTTTATCTAT 58.055 39.130 0.00 0.00 42.43 1.98
203 212 6.080648 ACACGGCATTCGACTTTATCTATA 57.919 37.500 0.00 0.00 42.43 1.31
204 213 5.919141 ACACGGCATTCGACTTTATCTATAC 59.081 40.000 0.00 0.00 42.43 1.47
205 214 6.150318 CACGGCATTCGACTTTATCTATACT 58.850 40.000 0.00 0.00 42.43 2.12
206 215 6.305877 CACGGCATTCGACTTTATCTATACTC 59.694 42.308 0.00 0.00 42.43 2.59
207 216 6.207025 ACGGCATTCGACTTTATCTATACTCT 59.793 38.462 0.00 0.00 42.43 3.24
208 217 7.085116 CGGCATTCGACTTTATCTATACTCTT 58.915 38.462 0.00 0.00 42.43 2.85
209 218 8.235226 CGGCATTCGACTTTATCTATACTCTTA 58.765 37.037 0.00 0.00 42.43 2.10
237 246 2.426522 CCGAGTTGGTGATGATTGTGT 58.573 47.619 0.00 0.00 0.00 3.72
238 247 2.160219 CCGAGTTGGTGATGATTGTGTG 59.840 50.000 0.00 0.00 0.00 3.82
239 248 2.413239 CGAGTTGGTGATGATTGTGTGC 60.413 50.000 0.00 0.00 0.00 4.57
240 249 1.888512 AGTTGGTGATGATTGTGTGCC 59.111 47.619 0.00 0.00 0.00 5.01
241 250 1.888512 GTTGGTGATGATTGTGTGCCT 59.111 47.619 0.00 0.00 0.00 4.75
242 251 1.536940 TGGTGATGATTGTGTGCCTG 58.463 50.000 0.00 0.00 0.00 4.85
243 252 0.171903 GGTGATGATTGTGTGCCTGC 59.828 55.000 0.00 0.00 0.00 4.85
244 253 0.171903 GTGATGATTGTGTGCCTGCC 59.828 55.000 0.00 0.00 0.00 4.85
245 254 0.251253 TGATGATTGTGTGCCTGCCA 60.251 50.000 0.00 0.00 0.00 4.92
246 255 1.108776 GATGATTGTGTGCCTGCCAT 58.891 50.000 0.00 0.00 0.00 4.40
247 256 1.066605 GATGATTGTGTGCCTGCCATC 59.933 52.381 0.00 0.00 0.00 3.51
248 257 0.038599 TGATTGTGTGCCTGCCATCT 59.961 50.000 0.00 0.00 0.00 2.90
249 258 1.180029 GATTGTGTGCCTGCCATCTT 58.820 50.000 0.00 0.00 0.00 2.40
250 259 0.892755 ATTGTGTGCCTGCCATCTTG 59.107 50.000 0.00 0.00 0.00 3.02
251 260 1.808531 TTGTGTGCCTGCCATCTTGC 61.809 55.000 0.00 0.00 0.00 4.01
252 261 2.115695 TGTGCCTGCCATCTTGCA 59.884 55.556 0.00 0.00 39.37 4.08
253 262 1.531128 TGTGCCTGCCATCTTGCAA 60.531 52.632 0.00 0.00 41.51 4.08
254 263 0.901114 TGTGCCTGCCATCTTGCAAT 60.901 50.000 0.00 0.00 41.51 3.56
255 264 1.105457 GTGCCTGCCATCTTGCAATA 58.895 50.000 0.00 0.00 41.51 1.90
256 265 1.684983 GTGCCTGCCATCTTGCAATAT 59.315 47.619 0.00 0.00 41.51 1.28
257 266 2.886523 GTGCCTGCCATCTTGCAATATA 59.113 45.455 0.00 0.00 41.51 0.86
258 267 3.057736 GTGCCTGCCATCTTGCAATATAG 60.058 47.826 0.00 0.00 41.51 1.31
259 268 3.181441 TGCCTGCCATCTTGCAATATAGA 60.181 43.478 0.00 0.00 41.51 1.98
260 269 3.190118 GCCTGCCATCTTGCAATATAGAC 59.810 47.826 0.00 0.00 41.51 2.59
261 270 3.755378 CCTGCCATCTTGCAATATAGACC 59.245 47.826 0.00 0.00 41.51 3.85
262 271 3.402110 TGCCATCTTGCAATATAGACCG 58.598 45.455 0.00 0.00 38.56 4.79
263 272 3.181455 TGCCATCTTGCAATATAGACCGT 60.181 43.478 0.00 0.00 38.56 4.83
264 273 3.433615 GCCATCTTGCAATATAGACCGTC 59.566 47.826 0.00 0.00 0.00 4.79
265 274 3.997021 CCATCTTGCAATATAGACCGTCC 59.003 47.826 0.00 0.00 0.00 4.79
266 275 3.364889 TCTTGCAATATAGACCGTCCG 57.635 47.619 0.00 0.00 0.00 4.79
267 276 2.953648 TCTTGCAATATAGACCGTCCGA 59.046 45.455 0.00 0.00 0.00 4.55
268 277 3.572682 TCTTGCAATATAGACCGTCCGAT 59.427 43.478 0.00 0.00 0.00 4.18
269 278 3.570926 TGCAATATAGACCGTCCGATC 57.429 47.619 0.00 0.00 0.00 3.69
270 279 3.154710 TGCAATATAGACCGTCCGATCT 58.845 45.455 0.00 0.00 0.00 2.75
271 280 4.329392 TGCAATATAGACCGTCCGATCTA 58.671 43.478 0.00 0.00 32.11 1.98
272 281 4.948004 TGCAATATAGACCGTCCGATCTAT 59.052 41.667 8.53 8.53 40.47 1.98
273 282 6.117488 TGCAATATAGACCGTCCGATCTATA 58.883 40.000 12.02 12.02 42.05 1.31
274 283 6.771267 TGCAATATAGACCGTCCGATCTATAT 59.229 38.462 14.93 14.93 46.24 0.86
275 284 7.041303 TGCAATATAGACCGTCCGATCTATATC 60.041 40.741 19.07 11.25 44.71 1.63
276 285 7.173562 GCAATATAGACCGTCCGATCTATATCT 59.826 40.741 19.07 10.15 44.71 1.98
277 286 9.708092 CAATATAGACCGTCCGATCTATATCTA 57.292 37.037 19.07 0.22 44.71 1.98
279 288 9.709495 ATATAGACCGTCCGATCTATATCTAAC 57.291 37.037 14.93 0.00 43.17 2.34
280 289 4.869297 AGACCGTCCGATCTATATCTAACG 59.131 45.833 0.00 5.63 37.40 3.18
281 290 4.533225 CCGTCCGATCTATATCTAACGG 57.467 50.000 13.15 13.15 44.34 4.44
289 298 9.327628 TCCGATCTATATCTAACGGATAGAAAG 57.672 37.037 0.00 0.00 43.73 2.62
290 299 8.071368 CCGATCTATATCTAACGGATAGAAAGC 58.929 40.741 0.00 0.00 43.73 3.51
291 300 8.613482 CGATCTATATCTAACGGATAGAAAGCA 58.387 37.037 0.00 0.00 43.73 3.91
294 303 9.909644 TCTATATCTAACGGATAGAAAGCAAAC 57.090 33.333 0.00 0.00 43.73 2.93
295 304 9.915629 CTATATCTAACGGATAGAAAGCAAACT 57.084 33.333 0.00 0.00 43.73 2.66
298 307 8.594881 ATCTAACGGATAGAAAGCAAACTATG 57.405 34.615 0.00 0.00 43.73 2.23
299 308 6.984474 TCTAACGGATAGAAAGCAAACTATGG 59.016 38.462 0.00 0.00 37.70 2.74
300 309 3.877508 ACGGATAGAAAGCAAACTATGGC 59.122 43.478 0.00 0.00 30.74 4.40
301 310 3.876914 CGGATAGAAAGCAAACTATGGCA 59.123 43.478 0.00 0.00 30.74 4.92
302 311 4.335315 CGGATAGAAAGCAAACTATGGCAA 59.665 41.667 0.00 0.00 30.74 4.52
303 312 5.009010 CGGATAGAAAGCAAACTATGGCAAT 59.991 40.000 0.00 0.00 30.74 3.56
304 313 6.460123 CGGATAGAAAGCAAACTATGGCAATT 60.460 38.462 0.00 0.00 30.74 2.32
305 314 7.267857 GGATAGAAAGCAAACTATGGCAATTT 58.732 34.615 0.00 0.00 30.74 1.82
306 315 7.765819 GGATAGAAAGCAAACTATGGCAATTTT 59.234 33.333 0.00 0.00 30.74 1.82
307 316 6.790285 AGAAAGCAAACTATGGCAATTTTG 57.210 33.333 12.14 12.14 33.03 2.44
322 331 4.956793 CAATTTTGCAAAAAGATACCCGC 58.043 39.130 27.10 0.00 0.00 6.13
323 332 3.735237 TTTTGCAAAAAGATACCCGCA 57.265 38.095 21.94 0.00 0.00 5.69
324 333 2.715737 TTGCAAAAAGATACCCGCAC 57.284 45.000 0.00 0.00 0.00 5.34
325 334 0.885196 TGCAAAAAGATACCCGCACC 59.115 50.000 0.00 0.00 0.00 5.01
326 335 1.173913 GCAAAAAGATACCCGCACCT 58.826 50.000 0.00 0.00 0.00 4.00
327 336 1.132453 GCAAAAAGATACCCGCACCTC 59.868 52.381 0.00 0.00 0.00 3.85
328 337 2.711542 CAAAAAGATACCCGCACCTCT 58.288 47.619 0.00 0.00 0.00 3.69
329 338 2.678336 CAAAAAGATACCCGCACCTCTC 59.322 50.000 0.00 0.00 0.00 3.20
330 339 1.867363 AAAGATACCCGCACCTCTCT 58.133 50.000 0.00 0.00 0.00 3.10
331 340 1.404843 AAGATACCCGCACCTCTCTC 58.595 55.000 0.00 0.00 0.00 3.20
332 341 0.468400 AGATACCCGCACCTCTCTCC 60.468 60.000 0.00 0.00 0.00 3.71
333 342 0.755698 GATACCCGCACCTCTCTCCA 60.756 60.000 0.00 0.00 0.00 3.86
334 343 1.043673 ATACCCGCACCTCTCTCCAC 61.044 60.000 0.00 0.00 0.00 4.02
335 344 2.435120 TACCCGCACCTCTCTCCACA 62.435 60.000 0.00 0.00 0.00 4.17
336 345 2.362369 CCCGCACCTCTCTCCACAT 61.362 63.158 0.00 0.00 0.00 3.21
337 346 1.599047 CCGCACCTCTCTCCACATT 59.401 57.895 0.00 0.00 0.00 2.71
338 347 0.036010 CCGCACCTCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32
339 348 1.081892 CGCACCTCTCTCCACATTTG 58.918 55.000 0.00 0.00 0.00 2.32
340 349 0.807496 GCACCTCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
341 350 1.883638 GCACCTCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
342 351 2.082231 CACCTCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
343 352 1.980765 ACCTCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
344 353 2.575279 ACCTCTCTCCACATTTGCAGAT 59.425 45.455 0.00 0.00 0.00 2.90
345 354 3.776969 ACCTCTCTCCACATTTGCAGATA 59.223 43.478 0.00 0.00 0.00 1.98
346 355 4.225942 ACCTCTCTCCACATTTGCAGATAA 59.774 41.667 0.00 0.00 0.00 1.75
347 356 4.815308 CCTCTCTCCACATTTGCAGATAAG 59.185 45.833 0.00 0.00 0.00 1.73
348 357 5.396101 CCTCTCTCCACATTTGCAGATAAGA 60.396 44.000 0.00 0.00 0.00 2.10
349 358 5.423015 TCTCTCCACATTTGCAGATAAGAC 58.577 41.667 0.00 0.00 0.00 3.01
350 359 4.517285 TCTCCACATTTGCAGATAAGACC 58.483 43.478 0.00 0.00 0.00 3.85
351 360 4.225942 TCTCCACATTTGCAGATAAGACCT 59.774 41.667 0.00 0.00 0.00 3.85
352 361 4.922206 TCCACATTTGCAGATAAGACCTT 58.078 39.130 0.00 0.00 0.00 3.50
353 362 4.943705 TCCACATTTGCAGATAAGACCTTC 59.056 41.667 0.00 0.00 0.00 3.46
354 363 4.096984 CCACATTTGCAGATAAGACCTTCC 59.903 45.833 0.00 0.00 0.00 3.46
355 364 4.096984 CACATTTGCAGATAAGACCTTCCC 59.903 45.833 0.00 0.00 0.00 3.97
356 365 4.018050 ACATTTGCAGATAAGACCTTCCCT 60.018 41.667 0.00 0.00 0.00 4.20
357 366 3.914426 TTGCAGATAAGACCTTCCCTC 57.086 47.619 0.00 0.00 0.00 4.30
358 367 1.757118 TGCAGATAAGACCTTCCCTCG 59.243 52.381 0.00 0.00 0.00 4.63
359 368 1.757699 GCAGATAAGACCTTCCCTCGT 59.242 52.381 0.00 0.00 0.00 4.18
360 369 2.168728 GCAGATAAGACCTTCCCTCGTT 59.831 50.000 0.00 0.00 0.00 3.85
361 370 3.738590 GCAGATAAGACCTTCCCTCGTTC 60.739 52.174 0.00 0.00 0.00 3.95
362 371 3.447586 CAGATAAGACCTTCCCTCGTTCA 59.552 47.826 0.00 0.00 0.00 3.18
363 372 4.100189 CAGATAAGACCTTCCCTCGTTCAT 59.900 45.833 0.00 0.00 0.00 2.57
364 373 4.342665 AGATAAGACCTTCCCTCGTTCATC 59.657 45.833 0.00 0.00 0.00 2.92
365 374 1.196012 AGACCTTCCCTCGTTCATCC 58.804 55.000 0.00 0.00 0.00 3.51
366 375 1.196012 GACCTTCCCTCGTTCATCCT 58.804 55.000 0.00 0.00 0.00 3.24
367 376 1.555533 GACCTTCCCTCGTTCATCCTT 59.444 52.381 0.00 0.00 0.00 3.36
368 377 2.764572 GACCTTCCCTCGTTCATCCTTA 59.235 50.000 0.00 0.00 0.00 2.69
369 378 3.385115 ACCTTCCCTCGTTCATCCTTAT 58.615 45.455 0.00 0.00 0.00 1.73
370 379 3.388350 ACCTTCCCTCGTTCATCCTTATC 59.612 47.826 0.00 0.00 0.00 1.75
371 380 3.643792 CCTTCCCTCGTTCATCCTTATCT 59.356 47.826 0.00 0.00 0.00 1.98
372 381 4.262249 CCTTCCCTCGTTCATCCTTATCTC 60.262 50.000 0.00 0.00 0.00 2.75
373 382 3.231818 TCCCTCGTTCATCCTTATCTCC 58.768 50.000 0.00 0.00 0.00 3.71
374 383 2.300437 CCCTCGTTCATCCTTATCTCCC 59.700 54.545 0.00 0.00 0.00 4.30
375 384 2.965831 CCTCGTTCATCCTTATCTCCCA 59.034 50.000 0.00 0.00 0.00 4.37
376 385 3.243907 CCTCGTTCATCCTTATCTCCCAC 60.244 52.174 0.00 0.00 0.00 4.61
377 386 3.371034 TCGTTCATCCTTATCTCCCACA 58.629 45.455 0.00 0.00 0.00 4.17
378 387 3.772572 TCGTTCATCCTTATCTCCCACAA 59.227 43.478 0.00 0.00 0.00 3.33
379 388 3.871594 CGTTCATCCTTATCTCCCACAAC 59.128 47.826 0.00 0.00 0.00 3.32
380 389 4.200092 GTTCATCCTTATCTCCCACAACC 58.800 47.826 0.00 0.00 0.00 3.77
381 390 3.736094 TCATCCTTATCTCCCACAACCT 58.264 45.455 0.00 0.00 0.00 3.50
382 391 3.711704 TCATCCTTATCTCCCACAACCTC 59.288 47.826 0.00 0.00 0.00 3.85
383 392 3.199442 TCCTTATCTCCCACAACCTCA 57.801 47.619 0.00 0.00 0.00 3.86
384 393 3.736094 TCCTTATCTCCCACAACCTCAT 58.264 45.455 0.00 0.00 0.00 2.90
385 394 4.111577 TCCTTATCTCCCACAACCTCATT 58.888 43.478 0.00 0.00 0.00 2.57
386 395 4.080356 TCCTTATCTCCCACAACCTCATTG 60.080 45.833 0.00 0.00 44.60 2.82
400 409 7.712264 CAACCTCATTGTTGAGCAATTAAAA 57.288 32.000 0.00 0.00 46.77 1.52
401 410 8.140677 CAACCTCATTGTTGAGCAATTAAAAA 57.859 30.769 0.00 0.00 46.77 1.94
426 435 7.622893 AAGAATTTCTCTGGAACAATCTAGC 57.377 36.000 0.00 0.00 38.70 3.42
427 436 6.715280 AGAATTTCTCTGGAACAATCTAGCA 58.285 36.000 0.00 0.00 38.70 3.49
428 437 7.344913 AGAATTTCTCTGGAACAATCTAGCAT 58.655 34.615 0.00 0.00 38.70 3.79
429 438 6.939132 ATTTCTCTGGAACAATCTAGCATG 57.061 37.500 0.00 0.00 38.70 4.06
430 439 4.412796 TCTCTGGAACAATCTAGCATGG 57.587 45.455 0.00 0.00 38.70 3.66
431 440 3.776969 TCTCTGGAACAATCTAGCATGGT 59.223 43.478 1.62 1.62 38.70 3.55
432 441 3.875727 CTCTGGAACAATCTAGCATGGTG 59.124 47.826 7.89 0.00 38.70 4.17
433 442 2.947652 CTGGAACAATCTAGCATGGTGG 59.052 50.000 7.89 4.47 38.70 4.61
434 443 1.678101 GGAACAATCTAGCATGGTGGC 59.322 52.381 7.89 0.00 0.00 5.01
435 444 1.678101 GAACAATCTAGCATGGTGGCC 59.322 52.381 7.89 0.00 0.00 5.36
436 445 0.625316 ACAATCTAGCATGGTGGCCA 59.375 50.000 0.00 0.00 38.19 5.36
437 446 1.027357 CAATCTAGCATGGTGGCCAC 58.973 55.000 28.57 28.57 35.80 5.01
438 447 0.625316 AATCTAGCATGGTGGCCACA 59.375 50.000 35.78 22.39 35.80 4.17
439 448 0.625316 ATCTAGCATGGTGGCCACAA 59.375 50.000 35.78 27.85 35.80 3.33
440 449 0.625316 TCTAGCATGGTGGCCACAAT 59.375 50.000 35.78 28.88 35.80 2.71
441 450 1.005805 TCTAGCATGGTGGCCACAATT 59.994 47.619 35.78 19.45 35.80 2.32
442 451 1.135527 CTAGCATGGTGGCCACAATTG 59.864 52.381 35.78 27.55 35.80 2.32
451 460 2.867472 CCACAATTGGCGTCGTCC 59.133 61.111 10.83 0.00 35.56 4.79
452 461 1.963855 CCACAATTGGCGTCGTCCA 60.964 57.895 10.83 4.55 35.56 4.02
453 462 1.305219 CCACAATTGGCGTCGTCCAT 61.305 55.000 10.83 0.00 35.56 3.41
454 463 0.096976 CACAATTGGCGTCGTCCATC 59.903 55.000 10.83 0.00 35.77 3.51
455 464 1.024579 ACAATTGGCGTCGTCCATCC 61.025 55.000 10.83 0.00 35.77 3.51
456 465 0.744414 CAATTGGCGTCGTCCATCCT 60.744 55.000 8.83 0.00 35.77 3.24
457 466 0.462047 AATTGGCGTCGTCCATCCTC 60.462 55.000 8.83 0.00 35.77 3.71
458 467 1.613317 ATTGGCGTCGTCCATCCTCA 61.613 55.000 8.83 0.00 35.77 3.86
459 468 1.613317 TTGGCGTCGTCCATCCTCAT 61.613 55.000 8.83 0.00 35.77 2.90
460 469 1.592669 GGCGTCGTCCATCCTCATG 60.593 63.158 0.00 0.00 0.00 3.07
461 470 2.240500 GCGTCGTCCATCCTCATGC 61.241 63.158 0.00 0.00 0.00 4.06
462 471 1.592669 CGTCGTCCATCCTCATGCC 60.593 63.158 0.00 0.00 0.00 4.40
463 472 1.826024 GTCGTCCATCCTCATGCCT 59.174 57.895 0.00 0.00 0.00 4.75
464 473 0.249657 GTCGTCCATCCTCATGCCTC 60.250 60.000 0.00 0.00 0.00 4.70
465 474 1.070445 CGTCCATCCTCATGCCTCC 59.930 63.158 0.00 0.00 0.00 4.30
466 475 1.070445 GTCCATCCTCATGCCTCCG 59.930 63.158 0.00 0.00 0.00 4.63
467 476 2.281345 CCATCCTCATGCCTCCGC 60.281 66.667 0.00 0.00 0.00 5.54
468 477 2.815945 CCATCCTCATGCCTCCGCT 61.816 63.158 0.00 0.00 35.36 5.52
469 478 1.301558 CATCCTCATGCCTCCGCTC 60.302 63.158 0.00 0.00 35.36 5.03
470 479 1.763655 ATCCTCATGCCTCCGCTCA 60.764 57.895 0.00 0.00 35.36 4.26
471 480 1.756408 ATCCTCATGCCTCCGCTCAG 61.756 60.000 0.00 0.00 35.36 3.35
472 481 2.729479 CCTCATGCCTCCGCTCAGT 61.729 63.158 0.00 0.00 35.36 3.41
473 482 1.227205 CTCATGCCTCCGCTCAGTC 60.227 63.158 0.00 0.00 35.36 3.51
474 483 1.674764 CTCATGCCTCCGCTCAGTCT 61.675 60.000 0.00 0.00 35.36 3.24
475 484 1.521010 CATGCCTCCGCTCAGTCTG 60.521 63.158 0.00 0.00 35.36 3.51
476 485 1.683707 ATGCCTCCGCTCAGTCTGA 60.684 57.895 1.78 1.78 35.36 3.27
477 486 1.954362 ATGCCTCCGCTCAGTCTGAC 61.954 60.000 0.00 0.00 35.36 3.51
478 487 2.888863 CCTCCGCTCAGTCTGACC 59.111 66.667 3.76 0.00 0.00 4.02
479 488 1.979155 CCTCCGCTCAGTCTGACCA 60.979 63.158 3.76 0.00 0.00 4.02
480 489 1.326213 CCTCCGCTCAGTCTGACCAT 61.326 60.000 3.76 0.00 0.00 3.55
481 490 0.102120 CTCCGCTCAGTCTGACCATC 59.898 60.000 3.76 0.00 0.00 3.51
482 491 0.611896 TCCGCTCAGTCTGACCATCA 60.612 55.000 3.76 0.00 0.00 3.07
483 492 0.247460 CCGCTCAGTCTGACCATCAA 59.753 55.000 3.76 0.00 0.00 2.57
484 493 1.134580 CCGCTCAGTCTGACCATCAAT 60.135 52.381 3.76 0.00 0.00 2.57
485 494 2.200067 CGCTCAGTCTGACCATCAATC 58.800 52.381 3.76 0.00 0.00 2.67
486 495 2.417787 CGCTCAGTCTGACCATCAATCA 60.418 50.000 3.76 0.00 0.00 2.57
487 496 2.935201 GCTCAGTCTGACCATCAATCAC 59.065 50.000 3.76 0.00 0.00 3.06
488 497 3.529533 CTCAGTCTGACCATCAATCACC 58.470 50.000 3.76 0.00 0.00 4.02
489 498 2.905736 TCAGTCTGACCATCAATCACCA 59.094 45.455 3.76 0.00 0.00 4.17
490 499 3.005554 CAGTCTGACCATCAATCACCAC 58.994 50.000 3.76 0.00 0.00 4.16
491 500 2.026822 AGTCTGACCATCAATCACCACC 60.027 50.000 3.76 0.00 0.00 4.61
492 501 1.984424 TCTGACCATCAATCACCACCA 59.016 47.619 0.00 0.00 0.00 4.17
493 502 2.086869 CTGACCATCAATCACCACCAC 58.913 52.381 0.00 0.00 0.00 4.16
494 503 1.086696 GACCATCAATCACCACCACG 58.913 55.000 0.00 0.00 0.00 4.94
495 504 0.960364 ACCATCAATCACCACCACGC 60.960 55.000 0.00 0.00 0.00 5.34
496 505 1.656818 CCATCAATCACCACCACGCC 61.657 60.000 0.00 0.00 0.00 5.68
497 506 1.378514 ATCAATCACCACCACGCCC 60.379 57.895 0.00 0.00 0.00 6.13
498 507 2.837031 ATCAATCACCACCACGCCCC 62.837 60.000 0.00 0.00 0.00 5.80
499 508 3.575247 AATCACCACCACGCCCCA 61.575 61.111 0.00 0.00 0.00 4.96
500 509 3.860930 AATCACCACCACGCCCCAC 62.861 63.158 0.00 0.00 0.00 4.61
505 514 4.394712 CACCACGCCCCACTCCTC 62.395 72.222 0.00 0.00 0.00 3.71
508 517 3.775654 CACGCCCCACTCCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
509 518 4.316823 ACGCCCCACTCCTCCTCA 62.317 66.667 0.00 0.00 0.00 3.86
510 519 3.775654 CGCCCCACTCCTCCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
511 520 3.403558 GCCCCACTCCTCCTCACC 61.404 72.222 0.00 0.00 0.00 4.02
512 521 2.452114 CCCCACTCCTCCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
513 522 1.229658 CCCCACTCCTCCTCACCTT 60.230 63.158 0.00 0.00 0.00 3.50
514 523 0.042731 CCCCACTCCTCCTCACCTTA 59.957 60.000 0.00 0.00 0.00 2.69
515 524 1.344496 CCCCACTCCTCCTCACCTTAT 60.344 57.143 0.00 0.00 0.00 1.73
516 525 2.043227 CCCACTCCTCCTCACCTTATC 58.957 57.143 0.00 0.00 0.00 1.75
517 526 2.359781 CCCACTCCTCCTCACCTTATCT 60.360 54.545 0.00 0.00 0.00 1.98
518 527 2.962421 CCACTCCTCCTCACCTTATCTC 59.038 54.545 0.00 0.00 0.00 2.75
519 528 3.373658 CCACTCCTCCTCACCTTATCTCT 60.374 52.174 0.00 0.00 0.00 3.10
520 529 3.888930 CACTCCTCCTCACCTTATCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
521 530 3.117284 ACTCCTCCTCACCTTATCTCTCC 60.117 52.174 0.00 0.00 0.00 3.71
522 531 3.135279 TCCTCCTCACCTTATCTCTCCT 58.865 50.000 0.00 0.00 0.00 3.69
523 532 4.316872 TCCTCCTCACCTTATCTCTCCTA 58.683 47.826 0.00 0.00 0.00 2.94
524 533 4.923236 TCCTCCTCACCTTATCTCTCCTAT 59.077 45.833 0.00 0.00 0.00 2.57
525 534 5.377164 TCCTCCTCACCTTATCTCTCCTATT 59.623 44.000 0.00 0.00 0.00 1.73
526 535 6.081356 CCTCCTCACCTTATCTCTCCTATTT 58.919 44.000 0.00 0.00 0.00 1.40
527 536 6.210584 CCTCCTCACCTTATCTCTCCTATTTC 59.789 46.154 0.00 0.00 0.00 2.17
528 537 6.928202 TCCTCACCTTATCTCTCCTATTTCT 58.072 40.000 0.00 0.00 0.00 2.52
529 538 7.007723 TCCTCACCTTATCTCTCCTATTTCTC 58.992 42.308 0.00 0.00 0.00 2.87
530 539 6.072175 CCTCACCTTATCTCTCCTATTTCTCG 60.072 46.154 0.00 0.00 0.00 4.04
531 540 6.602278 TCACCTTATCTCTCCTATTTCTCGA 58.398 40.000 0.00 0.00 0.00 4.04
532 541 6.712998 TCACCTTATCTCTCCTATTTCTCGAG 59.287 42.308 5.93 5.93 0.00 4.04
533 542 6.712998 CACCTTATCTCTCCTATTTCTCGAGA 59.287 42.308 12.08 12.08 35.46 4.04
534 543 7.393234 CACCTTATCTCTCCTATTTCTCGAGAT 59.607 40.741 17.44 4.68 42.34 2.75
535 544 8.607713 ACCTTATCTCTCCTATTTCTCGAGATA 58.392 37.037 17.44 12.45 40.69 1.98
536 545 9.627123 CCTTATCTCTCCTATTTCTCGAGATAT 57.373 37.037 17.44 18.99 41.01 1.63
540 549 9.699410 ATCTCTCCTATTTCTCGAGATATCATT 57.301 33.333 19.80 3.50 39.08 2.57
543 552 9.967451 TCTCCTATTTCTCGAGATATCATTAGT 57.033 33.333 19.80 1.87 0.00 2.24
562 571 9.747898 TCATTAGTTTTTACACATGGGATTACT 57.252 29.630 0.00 0.12 0.00 2.24
564 573 8.570068 TTAGTTTTTACACATGGGATTACTCC 57.430 34.615 0.00 0.00 41.26 3.85
581 590 4.317359 CCGCATGGGTCAATCACA 57.683 55.556 9.14 0.00 0.00 3.58
582 591 2.565647 CCGCATGGGTCAATCACAA 58.434 52.632 9.14 0.00 31.12 3.33
583 592 0.171007 CCGCATGGGTCAATCACAAC 59.829 55.000 9.14 0.00 31.12 3.32
584 593 0.880441 CGCATGGGTCAATCACAACA 59.120 50.000 0.68 0.00 31.12 3.33
585 594 1.135603 CGCATGGGTCAATCACAACAG 60.136 52.381 0.68 0.00 31.12 3.16
586 595 1.203052 GCATGGGTCAATCACAACAGG 59.797 52.381 0.00 0.00 31.12 4.00
587 596 2.517959 CATGGGTCAATCACAACAGGT 58.482 47.619 0.00 0.00 31.12 4.00
588 597 3.684908 CATGGGTCAATCACAACAGGTA 58.315 45.455 0.00 0.00 31.12 3.08
589 598 4.272489 CATGGGTCAATCACAACAGGTAT 58.728 43.478 0.00 0.00 31.12 2.73
590 599 4.380843 TGGGTCAATCACAACAGGTATT 57.619 40.909 0.00 0.00 0.00 1.89
591 600 4.735369 TGGGTCAATCACAACAGGTATTT 58.265 39.130 0.00 0.00 0.00 1.40
592 601 5.144100 TGGGTCAATCACAACAGGTATTTT 58.856 37.500 0.00 0.00 0.00 1.82
593 602 5.010516 TGGGTCAATCACAACAGGTATTTTG 59.989 40.000 0.00 0.00 0.00 2.44
594 603 5.010617 GGGTCAATCACAACAGGTATTTTGT 59.989 40.000 0.00 0.00 36.35 2.83
595 604 6.207810 GGGTCAATCACAACAGGTATTTTGTA 59.792 38.462 0.00 0.00 34.12 2.41
596 605 7.255660 GGGTCAATCACAACAGGTATTTTGTAA 60.256 37.037 0.00 0.00 34.12 2.41
597 606 8.138712 GGTCAATCACAACAGGTATTTTGTAAA 58.861 33.333 0.00 0.00 34.12 2.01
598 607 9.522804 GTCAATCACAACAGGTATTTTGTAAAA 57.477 29.630 0.00 0.00 34.12 1.52
618 627 4.789012 AAAATGCATCTTGATGTTCCGT 57.211 36.364 0.00 0.00 0.00 4.69
619 628 3.770263 AATGCATCTTGATGTTCCGTG 57.230 42.857 0.00 0.00 0.00 4.94
620 629 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
621 630 0.804364 GCATCTTGATGTTCCGTGCA 59.196 50.000 11.61 0.00 0.00 4.57
622 631 1.199789 GCATCTTGATGTTCCGTGCAA 59.800 47.619 11.61 0.00 0.00 4.08
623 632 2.159338 GCATCTTGATGTTCCGTGCAAT 60.159 45.455 11.61 0.00 0.00 3.56
624 633 3.431856 CATCTTGATGTTCCGTGCAATG 58.568 45.455 0.00 0.00 0.00 2.82
625 634 1.199789 TCTTGATGTTCCGTGCAATGC 59.800 47.619 0.00 0.00 0.00 3.56
626 635 0.957362 TTGATGTTCCGTGCAATGCA 59.043 45.000 2.72 2.72 35.60 3.96
641 650 3.414272 GCACGGGCATCTTGCTAG 58.586 61.111 3.77 0.00 44.28 3.42
642 651 1.450312 GCACGGGCATCTTGCTAGT 60.450 57.895 3.77 0.00 44.28 2.57
661 670 8.856153 TGCTAGTAAATGACAAAAATACCAGA 57.144 30.769 0.00 0.00 0.00 3.86
700 710 0.390492 CATCGCTGCAGGTCTATCCA 59.610 55.000 17.12 0.00 39.02 3.41
731 1205 4.035017 CACCGCGATCCAAATTAAATGAC 58.965 43.478 8.23 0.00 0.00 3.06
820 1294 8.190784 AGGGAGTGCTTTATTTATTGAAATTCG 58.809 33.333 0.00 0.00 36.62 3.34
858 1332 1.033574 TGGCCTAAAAACCGTTGTGG 58.966 50.000 3.32 0.00 46.41 4.17
865 1339 2.287393 AAAACCGTTGTGGAAAGCAC 57.713 45.000 0.00 0.00 42.00 4.40
1167 1646 4.521062 GATGGCTCTGACGGCGCT 62.521 66.667 6.90 0.00 0.00 5.92
1269 1748 3.414700 CAGCAGCCCGTCGTCAAC 61.415 66.667 0.00 0.00 0.00 3.18
1553 2032 1.183030 TCGTCTTTCCCTCCAGCGAA 61.183 55.000 0.00 0.00 0.00 4.70
1804 2289 5.870978 GCTTTGCAAATAGGAACATGATGTT 59.129 36.000 13.23 11.10 44.37 2.71
2175 3041 2.028112 GGTTGTCTGGTCAGCAGATACA 60.028 50.000 10.37 1.73 0.00 2.29
2199 3065 2.440501 GCCTTTTTCGTGATGTATGCG 58.559 47.619 0.00 0.00 0.00 4.73
2254 3120 6.146837 CCTTCAGGATTTCGCTCTTGTATATG 59.853 42.308 0.00 0.00 37.39 1.78
2294 3160 4.977741 CATTGCTGCAGACGAAATTTTT 57.022 36.364 20.43 0.00 0.00 1.94
2361 3229 0.604578 GCTTGGATGGCTGCAAAAGA 59.395 50.000 0.50 0.00 31.82 2.52
2398 3266 4.293494 TCCTGATTGAGGAGCATTCTACT 58.707 43.478 0.00 0.00 46.96 2.57
2401 3269 5.426504 CTGATTGAGGAGCATTCTACTTGT 58.573 41.667 0.00 0.00 32.34 3.16
2402 3270 5.181009 TGATTGAGGAGCATTCTACTTGTG 58.819 41.667 0.00 0.00 32.34 3.33
2404 3272 4.890158 TGAGGAGCATTCTACTTGTGAA 57.110 40.909 0.00 0.00 32.34 3.18
2437 3305 2.038557 TCTTTCTAGGGCACAGGTTGAC 59.961 50.000 0.00 0.00 0.00 3.18
2482 3350 8.573885 GTCTGTATAGCCCTTTAAAGTTTTGTT 58.426 33.333 14.03 1.21 0.00 2.83
2507 3375 2.301009 ACCCACGAAGTACGGAGAAATT 59.699 45.455 0.00 0.00 41.61 1.82
2675 3544 5.822519 CCAGCTACTTCAAGGCACATTTATA 59.177 40.000 0.00 0.00 0.00 0.98
2739 3921 0.962356 AGCGGCCTGAACCATTTGAG 60.962 55.000 0.00 0.00 0.00 3.02
2769 3951 2.548493 GCAAGAAATCAGGCAAAAGCCA 60.548 45.455 9.42 0.00 0.00 4.75
2782 3964 2.259266 AAAGCCACCCATGCAAAAAG 57.741 45.000 0.00 0.00 0.00 2.27
3128 4487 5.942961 TGTAGAAACCCTGGTTGTTAATGA 58.057 37.500 1.58 0.00 38.47 2.57
3167 4526 4.508124 GCGACATCCAACTCAGGTAAATAG 59.492 45.833 0.00 0.00 0.00 1.73
3180 4539 8.258708 ACTCAGGTAAATAGTTATGTTCTGACC 58.741 37.037 0.00 0.00 0.00 4.02
3240 4599 7.539712 TGTAAGCATGCTTAGAATAAGACAC 57.460 36.000 34.78 23.28 38.95 3.67
3268 4627 3.735746 CGGACAAGGAATTTTGCAACTTC 59.264 43.478 0.00 5.49 0.00 3.01
3349 4708 5.295292 GCTGTGCTACATATCTGTTCATGTT 59.705 40.000 0.00 0.00 36.74 2.71
3351 4710 5.585844 TGTGCTACATATCTGTTCATGTTGG 59.414 40.000 0.00 0.00 36.74 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 107 7.775397 ACATTTTTCAGAATTTGTTCACCAG 57.225 32.000 0.00 0.00 0.00 4.00
217 226 2.160219 CACACAATCATCACCAACTCGG 59.840 50.000 0.00 0.00 42.50 4.63
218 227 2.413239 GCACACAATCATCACCAACTCG 60.413 50.000 0.00 0.00 0.00 4.18
219 228 2.095059 GGCACACAATCATCACCAACTC 60.095 50.000 0.00 0.00 0.00 3.01
220 229 1.888512 GGCACACAATCATCACCAACT 59.111 47.619 0.00 0.00 0.00 3.16
221 230 1.888512 AGGCACACAATCATCACCAAC 59.111 47.619 0.00 0.00 0.00 3.77
222 231 1.887854 CAGGCACACAATCATCACCAA 59.112 47.619 0.00 0.00 0.00 3.67
223 232 1.536940 CAGGCACACAATCATCACCA 58.463 50.000 0.00 0.00 0.00 4.17
224 233 0.171903 GCAGGCACACAATCATCACC 59.828 55.000 0.00 0.00 0.00 4.02
225 234 0.171903 GGCAGGCACACAATCATCAC 59.828 55.000 0.00 0.00 0.00 3.06
226 235 0.251253 TGGCAGGCACACAATCATCA 60.251 50.000 0.00 0.00 0.00 3.07
227 236 1.066605 GATGGCAGGCACACAATCATC 59.933 52.381 0.00 0.00 0.00 2.92
228 237 1.108776 GATGGCAGGCACACAATCAT 58.891 50.000 0.00 0.00 0.00 2.45
229 238 0.038599 AGATGGCAGGCACACAATCA 59.961 50.000 0.00 0.00 0.00 2.57
230 239 1.135199 CAAGATGGCAGGCACACAATC 60.135 52.381 0.00 0.00 0.00 2.67
231 240 0.892755 CAAGATGGCAGGCACACAAT 59.107 50.000 0.00 0.00 0.00 2.71
232 241 1.808531 GCAAGATGGCAGGCACACAA 61.809 55.000 0.00 0.00 0.00 3.33
233 242 2.270257 GCAAGATGGCAGGCACACA 61.270 57.895 0.00 0.00 0.00 3.72
234 243 1.808531 TTGCAAGATGGCAGGCACAC 61.809 55.000 0.00 0.00 45.88 3.82
235 244 0.901114 ATTGCAAGATGGCAGGCACA 60.901 50.000 4.94 0.00 45.88 4.57
236 245 1.105457 TATTGCAAGATGGCAGGCAC 58.895 50.000 4.94 0.00 45.88 5.01
237 246 2.076207 ATATTGCAAGATGGCAGGCA 57.924 45.000 5.61 0.00 45.88 4.75
238 247 3.190118 GTCTATATTGCAAGATGGCAGGC 59.810 47.826 16.68 4.08 45.88 4.85
239 248 3.755378 GGTCTATATTGCAAGATGGCAGG 59.245 47.826 16.68 2.45 45.88 4.85
240 249 3.434641 CGGTCTATATTGCAAGATGGCAG 59.565 47.826 16.68 6.42 45.88 4.85
241 250 3.181455 ACGGTCTATATTGCAAGATGGCA 60.181 43.478 16.68 1.69 43.19 4.92
242 251 3.403038 ACGGTCTATATTGCAAGATGGC 58.597 45.455 16.68 9.50 0.00 4.40
243 252 3.997021 GGACGGTCTATATTGCAAGATGG 59.003 47.826 16.68 13.71 0.00 3.51
244 253 3.675225 CGGACGGTCTATATTGCAAGATG 59.325 47.826 16.68 6.94 0.00 2.90
245 254 3.572682 TCGGACGGTCTATATTGCAAGAT 59.427 43.478 11.88 11.88 0.00 2.40
246 255 2.953648 TCGGACGGTCTATATTGCAAGA 59.046 45.455 4.94 0.00 0.00 3.02
247 256 3.364889 TCGGACGGTCTATATTGCAAG 57.635 47.619 4.94 0.00 0.00 4.01
248 257 3.572682 AGATCGGACGGTCTATATTGCAA 59.427 43.478 5.58 0.00 0.00 4.08
249 258 3.154710 AGATCGGACGGTCTATATTGCA 58.845 45.455 5.58 0.00 0.00 4.08
250 259 3.851976 AGATCGGACGGTCTATATTGC 57.148 47.619 5.58 0.00 0.00 3.56
251 260 8.610248 AGATATAGATCGGACGGTCTATATTG 57.390 38.462 31.81 0.00 44.58 1.90
253 262 9.709495 GTTAGATATAGATCGGACGGTCTATAT 57.291 37.037 31.81 31.81 46.01 0.86
254 263 7.864882 CGTTAGATATAGATCGGACGGTCTATA 59.135 40.741 27.21 27.21 41.56 1.31
255 264 6.700960 CGTTAGATATAGATCGGACGGTCTAT 59.299 42.308 25.24 25.24 39.49 1.98
256 265 6.038985 CGTTAGATATAGATCGGACGGTCTA 58.961 44.000 16.04 16.04 39.49 2.59
257 266 4.869297 CGTTAGATATAGATCGGACGGTCT 59.131 45.833 12.50 12.50 39.49 3.85
258 267 5.141355 CGTTAGATATAGATCGGACGGTC 57.859 47.826 15.93 0.00 39.49 4.79
264 273 8.071368 GCTTTCTATCCGTTAGATATAGATCGG 58.929 40.741 0.00 0.00 36.84 4.18
265 274 8.613482 TGCTTTCTATCCGTTAGATATAGATCG 58.387 37.037 0.00 0.00 36.84 3.69
268 277 9.909644 GTTTGCTTTCTATCCGTTAGATATAGA 57.090 33.333 0.00 0.00 36.84 1.98
269 278 9.915629 AGTTTGCTTTCTATCCGTTAGATATAG 57.084 33.333 0.00 0.00 36.84 1.31
272 281 9.692749 CATAGTTTGCTTTCTATCCGTTAGATA 57.307 33.333 0.00 0.00 36.81 1.98
273 282 7.657761 CCATAGTTTGCTTTCTATCCGTTAGAT 59.342 37.037 0.00 0.00 36.81 1.98
274 283 6.984474 CCATAGTTTGCTTTCTATCCGTTAGA 59.016 38.462 0.00 0.00 35.06 2.10
275 284 6.292919 GCCATAGTTTGCTTTCTATCCGTTAG 60.293 42.308 0.00 0.00 0.00 2.34
276 285 5.526111 GCCATAGTTTGCTTTCTATCCGTTA 59.474 40.000 0.00 0.00 0.00 3.18
277 286 4.335594 GCCATAGTTTGCTTTCTATCCGTT 59.664 41.667 0.00 0.00 0.00 4.44
278 287 3.877508 GCCATAGTTTGCTTTCTATCCGT 59.122 43.478 0.00 0.00 0.00 4.69
279 288 3.876914 TGCCATAGTTTGCTTTCTATCCG 59.123 43.478 0.00 0.00 0.00 4.18
280 289 5.835113 TTGCCATAGTTTGCTTTCTATCC 57.165 39.130 0.00 0.00 0.00 2.59
281 290 8.598075 CAAAATTGCCATAGTTTGCTTTCTATC 58.402 33.333 0.00 0.00 0.00 2.08
282 291 8.483307 CAAAATTGCCATAGTTTGCTTTCTAT 57.517 30.769 0.00 0.00 0.00 1.98
283 292 7.887996 CAAAATTGCCATAGTTTGCTTTCTA 57.112 32.000 0.00 0.00 0.00 2.10
284 293 6.790285 CAAAATTGCCATAGTTTGCTTTCT 57.210 33.333 0.00 0.00 0.00 2.52
300 309 4.450419 TGCGGGTATCTTTTTGCAAAATTG 59.550 37.500 24.39 19.07 0.00 2.32
301 310 4.450757 GTGCGGGTATCTTTTTGCAAAATT 59.549 37.500 24.39 14.72 33.67 1.82
302 311 3.993736 GTGCGGGTATCTTTTTGCAAAAT 59.006 39.130 24.39 12.94 33.67 1.82
303 312 3.385577 GTGCGGGTATCTTTTTGCAAAA 58.614 40.909 20.46 20.46 33.67 2.44
304 313 2.288518 GGTGCGGGTATCTTTTTGCAAA 60.289 45.455 8.05 8.05 33.67 3.68
305 314 1.271102 GGTGCGGGTATCTTTTTGCAA 59.729 47.619 0.00 0.00 33.67 4.08
306 315 0.885196 GGTGCGGGTATCTTTTTGCA 59.115 50.000 0.00 0.00 0.00 4.08
307 316 1.132453 GAGGTGCGGGTATCTTTTTGC 59.868 52.381 0.00 0.00 0.00 3.68
308 317 2.678336 GAGAGGTGCGGGTATCTTTTTG 59.322 50.000 0.00 0.00 0.00 2.44
309 318 2.572104 AGAGAGGTGCGGGTATCTTTTT 59.428 45.455 0.00 0.00 0.00 1.94
310 319 2.168728 GAGAGAGGTGCGGGTATCTTTT 59.831 50.000 0.00 0.00 0.00 2.27
311 320 1.757699 GAGAGAGGTGCGGGTATCTTT 59.242 52.381 0.00 0.00 0.00 2.52
312 321 1.404843 GAGAGAGGTGCGGGTATCTT 58.595 55.000 0.00 0.00 0.00 2.40
313 322 0.468400 GGAGAGAGGTGCGGGTATCT 60.468 60.000 0.00 0.00 0.00 1.98
314 323 0.755698 TGGAGAGAGGTGCGGGTATC 60.756 60.000 0.00 0.00 0.00 2.24
315 324 1.043673 GTGGAGAGAGGTGCGGGTAT 61.044 60.000 0.00 0.00 0.00 2.73
316 325 1.681327 GTGGAGAGAGGTGCGGGTA 60.681 63.158 0.00 0.00 0.00 3.69
317 326 2.997897 GTGGAGAGAGGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
318 327 1.903877 AATGTGGAGAGAGGTGCGGG 61.904 60.000 0.00 0.00 0.00 6.13
319 328 0.036010 AAATGTGGAGAGAGGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
320 329 1.081892 CAAATGTGGAGAGAGGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
321 330 0.807496 GCAAATGTGGAGAGAGGTGC 59.193 55.000 0.00 0.00 0.00 5.01
322 331 2.082231 CTGCAAATGTGGAGAGAGGTG 58.918 52.381 0.00 0.00 45.65 4.00
323 332 1.980765 TCTGCAAATGTGGAGAGAGGT 59.019 47.619 2.39 0.00 46.25 3.85
324 333 2.775911 TCTGCAAATGTGGAGAGAGG 57.224 50.000 2.39 0.00 46.25 3.69
329 338 4.521146 AGGTCTTATCTGCAAATGTGGAG 58.479 43.478 0.00 0.00 44.23 3.86
330 339 4.574674 AGGTCTTATCTGCAAATGTGGA 57.425 40.909 0.00 0.00 0.00 4.02
331 340 4.096984 GGAAGGTCTTATCTGCAAATGTGG 59.903 45.833 0.00 0.00 0.00 4.17
332 341 4.096984 GGGAAGGTCTTATCTGCAAATGTG 59.903 45.833 0.00 0.00 0.00 3.21
333 342 4.018050 AGGGAAGGTCTTATCTGCAAATGT 60.018 41.667 0.00 0.00 0.00 2.71
334 343 4.530875 AGGGAAGGTCTTATCTGCAAATG 58.469 43.478 0.00 0.00 0.00 2.32
335 344 4.684485 CGAGGGAAGGTCTTATCTGCAAAT 60.684 45.833 0.00 0.00 0.00 2.32
336 345 3.369471 CGAGGGAAGGTCTTATCTGCAAA 60.369 47.826 0.00 0.00 0.00 3.68
337 346 2.168521 CGAGGGAAGGTCTTATCTGCAA 59.831 50.000 0.00 0.00 0.00 4.08
338 347 1.757118 CGAGGGAAGGTCTTATCTGCA 59.243 52.381 0.00 0.00 0.00 4.41
339 348 1.757699 ACGAGGGAAGGTCTTATCTGC 59.242 52.381 0.00 0.00 0.00 4.26
340 349 3.447586 TGAACGAGGGAAGGTCTTATCTG 59.552 47.826 0.00 0.00 0.00 2.90
341 350 3.709587 TGAACGAGGGAAGGTCTTATCT 58.290 45.455 0.00 0.00 0.00 1.98
342 351 4.501743 GGATGAACGAGGGAAGGTCTTATC 60.502 50.000 0.00 0.00 0.00 1.75
343 352 3.388350 GGATGAACGAGGGAAGGTCTTAT 59.612 47.826 0.00 0.00 0.00 1.73
344 353 2.764572 GGATGAACGAGGGAAGGTCTTA 59.235 50.000 0.00 0.00 0.00 2.10
345 354 1.555533 GGATGAACGAGGGAAGGTCTT 59.444 52.381 0.00 0.00 0.00 3.01
346 355 1.196012 GGATGAACGAGGGAAGGTCT 58.804 55.000 0.00 0.00 0.00 3.85
347 356 1.196012 AGGATGAACGAGGGAAGGTC 58.804 55.000 0.00 0.00 0.00 3.85
348 357 1.657804 AAGGATGAACGAGGGAAGGT 58.342 50.000 0.00 0.00 0.00 3.50
349 358 3.643792 AGATAAGGATGAACGAGGGAAGG 59.356 47.826 0.00 0.00 0.00 3.46
350 359 4.262249 GGAGATAAGGATGAACGAGGGAAG 60.262 50.000 0.00 0.00 0.00 3.46
351 360 3.641906 GGAGATAAGGATGAACGAGGGAA 59.358 47.826 0.00 0.00 0.00 3.97
352 361 3.231818 GGAGATAAGGATGAACGAGGGA 58.768 50.000 0.00 0.00 0.00 4.20
353 362 2.300437 GGGAGATAAGGATGAACGAGGG 59.700 54.545 0.00 0.00 0.00 4.30
354 363 2.965831 TGGGAGATAAGGATGAACGAGG 59.034 50.000 0.00 0.00 0.00 4.63
355 364 3.384789 TGTGGGAGATAAGGATGAACGAG 59.615 47.826 0.00 0.00 0.00 4.18
356 365 3.371034 TGTGGGAGATAAGGATGAACGA 58.629 45.455 0.00 0.00 0.00 3.85
357 366 3.819564 TGTGGGAGATAAGGATGAACG 57.180 47.619 0.00 0.00 0.00 3.95
358 367 4.080299 AGGTTGTGGGAGATAAGGATGAAC 60.080 45.833 0.00 0.00 0.00 3.18
359 368 4.111577 AGGTTGTGGGAGATAAGGATGAA 58.888 43.478 0.00 0.00 0.00 2.57
360 369 3.711704 GAGGTTGTGGGAGATAAGGATGA 59.288 47.826 0.00 0.00 0.00 2.92
361 370 3.455910 TGAGGTTGTGGGAGATAAGGATG 59.544 47.826 0.00 0.00 0.00 3.51
362 371 3.736094 TGAGGTTGTGGGAGATAAGGAT 58.264 45.455 0.00 0.00 0.00 3.24
363 372 3.199442 TGAGGTTGTGGGAGATAAGGA 57.801 47.619 0.00 0.00 0.00 3.36
364 373 4.202441 CAATGAGGTTGTGGGAGATAAGG 58.798 47.826 0.00 0.00 33.01 2.69
400 409 8.518702 GCTAGATTGTTCCAGAGAAATTCTTTT 58.481 33.333 0.00 0.00 32.41 2.27
401 410 7.667219 TGCTAGATTGTTCCAGAGAAATTCTTT 59.333 33.333 0.00 0.00 32.41 2.52
402 411 7.170965 TGCTAGATTGTTCCAGAGAAATTCTT 58.829 34.615 0.00 0.00 32.41 2.52
403 412 6.715280 TGCTAGATTGTTCCAGAGAAATTCT 58.285 36.000 0.00 0.00 36.25 2.40
404 413 6.992063 TGCTAGATTGTTCCAGAGAAATTC 57.008 37.500 0.00 0.00 32.58 2.17
405 414 6.320672 CCATGCTAGATTGTTCCAGAGAAATT 59.679 38.462 0.00 0.00 32.58 1.82
406 415 5.826737 CCATGCTAGATTGTTCCAGAGAAAT 59.173 40.000 0.00 0.00 32.58 2.17
407 416 5.188434 CCATGCTAGATTGTTCCAGAGAAA 58.812 41.667 0.00 0.00 32.58 2.52
408 417 4.225942 ACCATGCTAGATTGTTCCAGAGAA 59.774 41.667 0.00 0.00 0.00 2.87
409 418 3.776969 ACCATGCTAGATTGTTCCAGAGA 59.223 43.478 0.00 0.00 0.00 3.10
410 419 3.875727 CACCATGCTAGATTGTTCCAGAG 59.124 47.826 0.00 0.00 0.00 3.35
411 420 3.370846 CCACCATGCTAGATTGTTCCAGA 60.371 47.826 0.00 0.00 0.00 3.86
412 421 2.947652 CCACCATGCTAGATTGTTCCAG 59.052 50.000 0.00 0.00 0.00 3.86
413 422 2.945440 GCCACCATGCTAGATTGTTCCA 60.945 50.000 0.00 0.00 0.00 3.53
414 423 1.678101 GCCACCATGCTAGATTGTTCC 59.322 52.381 0.00 0.00 0.00 3.62
415 424 1.678101 GGCCACCATGCTAGATTGTTC 59.322 52.381 0.00 0.00 0.00 3.18
416 425 1.005805 TGGCCACCATGCTAGATTGTT 59.994 47.619 0.00 0.00 0.00 2.83
417 426 0.625316 TGGCCACCATGCTAGATTGT 59.375 50.000 0.00 0.00 0.00 2.71
418 427 1.027357 GTGGCCACCATGCTAGATTG 58.973 55.000 26.31 0.00 35.28 2.67
419 428 0.625316 TGTGGCCACCATGCTAGATT 59.375 50.000 32.62 0.00 35.28 2.40
420 429 0.625316 TTGTGGCCACCATGCTAGAT 59.375 50.000 32.62 0.00 35.28 1.98
421 430 0.625316 ATTGTGGCCACCATGCTAGA 59.375 50.000 32.62 8.94 35.28 2.43
422 431 1.135527 CAATTGTGGCCACCATGCTAG 59.864 52.381 32.62 14.08 35.28 3.42
423 432 1.184431 CAATTGTGGCCACCATGCTA 58.816 50.000 32.62 10.60 35.28 3.49
424 433 1.546589 CCAATTGTGGCCACCATGCT 61.547 55.000 32.62 10.85 38.35 3.79
425 434 1.078988 CCAATTGTGGCCACCATGC 60.079 57.895 32.62 8.54 38.35 4.06
435 444 0.096976 GATGGACGACGCCAATTGTG 59.903 55.000 13.63 0.00 42.16 3.33
436 445 1.024579 GGATGGACGACGCCAATTGT 61.025 55.000 13.63 0.00 42.16 2.71
437 446 0.744414 AGGATGGACGACGCCAATTG 60.744 55.000 13.63 0.00 42.16 2.32
438 447 0.462047 GAGGATGGACGACGCCAATT 60.462 55.000 13.63 0.59 42.16 2.32
439 448 1.144057 GAGGATGGACGACGCCAAT 59.856 57.895 13.63 0.00 42.16 3.16
440 449 1.613317 ATGAGGATGGACGACGCCAA 61.613 55.000 13.63 0.00 42.16 4.52
441 450 2.058001 ATGAGGATGGACGACGCCA 61.058 57.895 12.33 12.33 43.23 5.69
442 451 1.592669 CATGAGGATGGACGACGCC 60.593 63.158 0.00 0.00 0.00 5.68
443 452 2.240500 GCATGAGGATGGACGACGC 61.241 63.158 0.00 0.00 0.00 5.19
444 453 1.592669 GGCATGAGGATGGACGACG 60.593 63.158 0.00 0.00 0.00 5.12
445 454 0.249657 GAGGCATGAGGATGGACGAC 60.250 60.000 0.00 0.00 0.00 4.34
446 455 1.402896 GGAGGCATGAGGATGGACGA 61.403 60.000 0.00 0.00 0.00 4.20
447 456 1.070445 GGAGGCATGAGGATGGACG 59.930 63.158 0.00 0.00 0.00 4.79
448 457 1.070445 CGGAGGCATGAGGATGGAC 59.930 63.158 0.00 0.00 0.00 4.02
449 458 2.811514 GCGGAGGCATGAGGATGGA 61.812 63.158 0.00 0.00 39.62 3.41
450 459 2.281345 GCGGAGGCATGAGGATGG 60.281 66.667 0.00 0.00 39.62 3.51
451 460 1.301558 GAGCGGAGGCATGAGGATG 60.302 63.158 0.00 0.00 43.41 3.51
452 461 1.756408 CTGAGCGGAGGCATGAGGAT 61.756 60.000 0.00 0.00 43.41 3.24
453 462 2.364186 TGAGCGGAGGCATGAGGA 60.364 61.111 0.00 0.00 43.41 3.71
454 463 2.108566 CTGAGCGGAGGCATGAGG 59.891 66.667 0.00 0.00 43.41 3.86
455 464 1.227205 GACTGAGCGGAGGCATGAG 60.227 63.158 0.00 0.00 43.41 2.90
456 465 1.683707 AGACTGAGCGGAGGCATGA 60.684 57.895 0.00 0.00 43.41 3.07
457 466 1.521010 CAGACTGAGCGGAGGCATG 60.521 63.158 0.00 0.00 43.41 4.06
458 467 1.683707 TCAGACTGAGCGGAGGCAT 60.684 57.895 0.00 0.00 43.41 4.40
459 468 2.283173 TCAGACTGAGCGGAGGCA 60.283 61.111 0.00 0.00 43.41 4.75
460 469 2.183046 GTCAGACTGAGCGGAGGC 59.817 66.667 5.10 0.00 40.37 4.70
461 470 2.888863 GGTCAGACTGAGCGGAGG 59.111 66.667 18.22 0.00 35.04 4.30
466 475 2.935201 GTGATTGATGGTCAGACTGAGC 59.065 50.000 24.56 24.56 44.54 4.26
467 476 3.055602 TGGTGATTGATGGTCAGACTGAG 60.056 47.826 5.10 0.00 0.00 3.35
468 477 2.905736 TGGTGATTGATGGTCAGACTGA 59.094 45.455 0.00 0.00 0.00 3.41
469 478 3.005554 GTGGTGATTGATGGTCAGACTG 58.994 50.000 0.00 0.00 0.00 3.51
470 479 2.026822 GGTGGTGATTGATGGTCAGACT 60.027 50.000 0.00 0.00 0.00 3.24
471 480 2.290260 TGGTGGTGATTGATGGTCAGAC 60.290 50.000 0.00 0.00 0.00 3.51
472 481 1.984424 TGGTGGTGATTGATGGTCAGA 59.016 47.619 0.00 0.00 0.00 3.27
473 482 2.086869 GTGGTGGTGATTGATGGTCAG 58.913 52.381 0.00 0.00 0.00 3.51
474 483 1.610363 CGTGGTGGTGATTGATGGTCA 60.610 52.381 0.00 0.00 0.00 4.02
475 484 1.086696 CGTGGTGGTGATTGATGGTC 58.913 55.000 0.00 0.00 0.00 4.02
476 485 0.960364 GCGTGGTGGTGATTGATGGT 60.960 55.000 0.00 0.00 0.00 3.55
477 486 1.656818 GGCGTGGTGGTGATTGATGG 61.657 60.000 0.00 0.00 0.00 3.51
478 487 1.656818 GGGCGTGGTGGTGATTGATG 61.657 60.000 0.00 0.00 0.00 3.07
479 488 1.378514 GGGCGTGGTGGTGATTGAT 60.379 57.895 0.00 0.00 0.00 2.57
480 489 2.033448 GGGCGTGGTGGTGATTGA 59.967 61.111 0.00 0.00 0.00 2.57
481 490 3.061848 GGGGCGTGGTGGTGATTG 61.062 66.667 0.00 0.00 0.00 2.67
482 491 3.575247 TGGGGCGTGGTGGTGATT 61.575 61.111 0.00 0.00 0.00 2.57
483 492 4.344865 GTGGGGCGTGGTGGTGAT 62.345 66.667 0.00 0.00 0.00 3.06
488 497 4.394712 GAGGAGTGGGGCGTGGTG 62.395 72.222 0.00 0.00 0.00 4.17
491 500 3.775654 GAGGAGGAGTGGGGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
492 501 4.316823 TGAGGAGGAGTGGGGCGT 62.317 66.667 0.00 0.00 0.00 5.68
493 502 3.775654 GTGAGGAGGAGTGGGGCG 61.776 72.222 0.00 0.00 0.00 6.13
494 503 3.403558 GGTGAGGAGGAGTGGGGC 61.404 72.222 0.00 0.00 0.00 5.80
495 504 0.042731 TAAGGTGAGGAGGAGTGGGG 59.957 60.000 0.00 0.00 0.00 4.96
496 505 2.043227 GATAAGGTGAGGAGGAGTGGG 58.957 57.143 0.00 0.00 0.00 4.61
497 506 2.962421 GAGATAAGGTGAGGAGGAGTGG 59.038 54.545 0.00 0.00 0.00 4.00
498 507 3.888930 GAGAGATAAGGTGAGGAGGAGTG 59.111 52.174 0.00 0.00 0.00 3.51
499 508 3.117284 GGAGAGATAAGGTGAGGAGGAGT 60.117 52.174 0.00 0.00 0.00 3.85
500 509 3.140144 AGGAGAGATAAGGTGAGGAGGAG 59.860 52.174 0.00 0.00 0.00 3.69
501 510 3.135279 AGGAGAGATAAGGTGAGGAGGA 58.865 50.000 0.00 0.00 0.00 3.71
502 511 3.611025 AGGAGAGATAAGGTGAGGAGG 57.389 52.381 0.00 0.00 0.00 4.30
503 512 7.010160 AGAAATAGGAGAGATAAGGTGAGGAG 58.990 42.308 0.00 0.00 0.00 3.69
504 513 6.928202 AGAAATAGGAGAGATAAGGTGAGGA 58.072 40.000 0.00 0.00 0.00 3.71
505 514 6.072175 CGAGAAATAGGAGAGATAAGGTGAGG 60.072 46.154 0.00 0.00 0.00 3.86
506 515 6.712998 TCGAGAAATAGGAGAGATAAGGTGAG 59.287 42.308 0.00 0.00 0.00 3.51
507 516 6.602278 TCGAGAAATAGGAGAGATAAGGTGA 58.398 40.000 0.00 0.00 0.00 4.02
508 517 6.712998 TCTCGAGAAATAGGAGAGATAAGGTG 59.287 42.308 14.01 0.00 33.58 4.00
509 518 6.843752 TCTCGAGAAATAGGAGAGATAAGGT 58.156 40.000 14.01 0.00 33.58 3.50
510 519 7.938140 ATCTCGAGAAATAGGAGAGATAAGG 57.062 40.000 20.91 0.00 44.12 2.69
514 523 9.699410 AATGATATCTCGAGAAATAGGAGAGAT 57.301 33.333 20.91 10.51 46.55 2.75
517 526 9.967451 ACTAATGATATCTCGAGAAATAGGAGA 57.033 33.333 20.91 1.11 40.75 3.71
536 545 9.747898 AGTAATCCCATGTGTAAAAACTAATGA 57.252 29.630 0.00 0.00 0.00 2.57
538 547 9.185680 GGAGTAATCCCATGTGTAAAAACTAAT 57.814 33.333 0.00 0.00 0.00 1.73
539 548 8.570068 GGAGTAATCCCATGTGTAAAAACTAA 57.430 34.615 0.00 0.00 0.00 2.24
554 563 4.800554 CCATGCGGGAGTAATCCC 57.199 61.111 18.69 18.69 46.43 3.85
564 573 0.171007 GTTGTGATTGACCCATGCGG 59.829 55.000 0.00 0.00 37.81 5.69
565 574 0.880441 TGTTGTGATTGACCCATGCG 59.120 50.000 0.00 0.00 0.00 4.73
566 575 1.203052 CCTGTTGTGATTGACCCATGC 59.797 52.381 0.00 0.00 0.00 4.06
567 576 2.517959 ACCTGTTGTGATTGACCCATG 58.482 47.619 0.00 0.00 0.00 3.66
568 577 2.978156 ACCTGTTGTGATTGACCCAT 57.022 45.000 0.00 0.00 0.00 4.00
569 578 4.380843 AATACCTGTTGTGATTGACCCA 57.619 40.909 0.00 0.00 0.00 4.51
570 579 5.010617 ACAAAATACCTGTTGTGATTGACCC 59.989 40.000 0.00 0.00 36.62 4.46
571 580 6.084326 ACAAAATACCTGTTGTGATTGACC 57.916 37.500 0.00 0.00 36.62 4.02
572 581 9.522804 TTTTACAAAATACCTGTTGTGATTGAC 57.477 29.630 0.00 0.00 38.40 3.18
596 605 4.925054 CACGGAACATCAAGATGCATTTTT 59.075 37.500 9.85 0.00 42.39 1.94
597 606 4.487948 CACGGAACATCAAGATGCATTTT 58.512 39.130 9.85 0.00 42.39 1.82
598 607 3.674138 GCACGGAACATCAAGATGCATTT 60.674 43.478 9.85 0.00 42.39 2.32
599 608 2.159338 GCACGGAACATCAAGATGCATT 60.159 45.455 9.85 0.00 42.39 3.56
600 609 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
601 610 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
602 611 0.804364 TGCACGGAACATCAAGATGC 59.196 50.000 9.85 0.00 42.39 3.91
603 612 3.431856 CATTGCACGGAACATCAAGATG 58.568 45.455 8.45 8.45 44.15 2.90
604 613 2.159338 GCATTGCACGGAACATCAAGAT 60.159 45.455 3.15 0.00 0.00 2.40
605 614 1.199789 GCATTGCACGGAACATCAAGA 59.800 47.619 3.15 0.00 0.00 3.02
606 615 1.068402 TGCATTGCACGGAACATCAAG 60.068 47.619 7.38 0.00 31.71 3.02
607 616 0.957362 TGCATTGCACGGAACATCAA 59.043 45.000 7.38 0.00 31.71 2.57
608 617 2.638744 TGCATTGCACGGAACATCA 58.361 47.368 7.38 0.00 31.71 3.07
624 633 0.179084 TACTAGCAAGATGCCCGTGC 60.179 55.000 6.11 6.11 46.52 5.34
625 634 2.309528 TTACTAGCAAGATGCCCGTG 57.690 50.000 0.00 0.00 46.52 4.94
626 635 3.118408 TCATTTACTAGCAAGATGCCCGT 60.118 43.478 0.00 0.00 46.52 5.28
627 636 3.248602 GTCATTTACTAGCAAGATGCCCG 59.751 47.826 0.00 0.00 46.52 6.13
628 637 4.199310 TGTCATTTACTAGCAAGATGCCC 58.801 43.478 0.00 0.00 46.52 5.36
629 638 5.818136 TTGTCATTTACTAGCAAGATGCC 57.182 39.130 0.00 0.00 46.52 4.40
630 639 8.693542 ATTTTTGTCATTTACTAGCAAGATGC 57.306 30.769 0.00 0.00 45.46 3.91
633 642 9.290988 TGGTATTTTTGTCATTTACTAGCAAGA 57.709 29.630 0.00 0.00 0.00 3.02
634 643 9.559958 CTGGTATTTTTGTCATTTACTAGCAAG 57.440 33.333 0.00 0.00 0.00 4.01
635 644 9.290988 TCTGGTATTTTTGTCATTTACTAGCAA 57.709 29.630 0.00 0.00 0.00 3.91
636 645 8.726988 GTCTGGTATTTTTGTCATTTACTAGCA 58.273 33.333 0.00 0.00 0.00 3.49
637 646 8.182227 GGTCTGGTATTTTTGTCATTTACTAGC 58.818 37.037 0.00 0.00 0.00 3.42
638 647 8.388103 CGGTCTGGTATTTTTGTCATTTACTAG 58.612 37.037 0.00 0.00 0.00 2.57
639 648 8.095792 TCGGTCTGGTATTTTTGTCATTTACTA 58.904 33.333 0.00 0.00 0.00 1.82
640 649 6.938030 TCGGTCTGGTATTTTTGTCATTTACT 59.062 34.615 0.00 0.00 0.00 2.24
641 650 7.136289 TCGGTCTGGTATTTTTGTCATTTAC 57.864 36.000 0.00 0.00 0.00 2.01
642 651 7.747155 TTCGGTCTGGTATTTTTGTCATTTA 57.253 32.000 0.00 0.00 0.00 1.40
661 670 0.953960 GAGGCACGGTCAATTTCGGT 60.954 55.000 0.00 0.00 0.00 4.69
700 710 1.283181 GATCGCGGTGCTATCTCGT 59.717 57.895 6.13 0.00 29.78 4.18
831 1305 5.743026 ACGGTTTTTAGGCCAAAAATTTG 57.257 34.783 21.02 16.98 45.39 2.32
835 1309 3.933332 CACAACGGTTTTTAGGCCAAAAA 59.067 39.130 16.82 16.82 42.47 1.94
858 1332 1.082104 CCGTTGGCTTCGTGCTTTC 60.082 57.895 3.58 0.00 42.39 2.62
865 1339 1.241315 ATTTCCACCCGTTGGCTTCG 61.241 55.000 0.00 0.00 46.47 3.79
1145 1624 1.440893 CCGTCAGAGCCATCAGAGG 59.559 63.158 0.00 0.00 0.00 3.69
1149 1628 4.819761 GCGCCGTCAGAGCCATCA 62.820 66.667 0.00 0.00 0.00 3.07
1269 1748 0.031449 GCTCCTTCTCGATCTTCGGG 59.969 60.000 0.00 0.00 42.83 5.14
1272 1751 3.380004 TCTTGAGCTCCTTCTCGATCTTC 59.620 47.826 12.15 0.00 35.90 2.87
1454 1933 2.766651 TACAGGGTGGATCCGGGC 60.767 66.667 7.39 0.00 37.00 6.13
1553 2032 1.299976 GAGCCTCCAAATGTCCGGT 59.700 57.895 0.00 0.00 0.00 5.28
1804 2289 9.902196 TTCGCACAAAATAAGATATACGAGATA 57.098 29.630 0.00 0.00 0.00 1.98
1819 2304 5.415701 ACAAGATACATCCTTCGCACAAAAT 59.584 36.000 0.00 0.00 0.00 1.82
1880 2388 5.124457 GCTTGTCTATTTTGATTCTGCTGGA 59.876 40.000 0.00 0.00 0.00 3.86
1891 2399 4.730657 CTTGAGGCTGCTTGTCTATTTTG 58.269 43.478 0.00 0.00 0.00 2.44
1970 2835 7.920160 TGTTTCTGTGCATCAATACTGAATA 57.080 32.000 0.00 0.00 35.59 1.75
2007 2873 3.966154 AGTAGAATGCGATCCGTTACTG 58.034 45.455 0.00 0.00 0.00 2.74
2199 3065 6.977213 ACAACATTAAACATGTACCTTCCAC 58.023 36.000 0.00 0.00 0.00 4.02
2254 3120 5.464168 CAATGCATGGGTTATTTAGCTAGC 58.536 41.667 6.62 6.62 0.00 3.42
2294 3160 9.420118 ACATATACATGAAAGCTTGGGATAAAA 57.580 29.630 0.00 0.00 35.96 1.52
2295 3161 8.995027 ACATATACATGAAAGCTTGGGATAAA 57.005 30.769 0.00 0.00 35.96 1.40
2361 3229 5.363868 TCAATCAGGATAATCTTCACTCGGT 59.636 40.000 0.00 0.00 0.00 4.69
2398 3266 6.405538 AGAAAGAAACCAGCAAAATTCACAA 58.594 32.000 0.00 0.00 0.00 3.33
2401 3269 6.239289 CCCTAGAAAGAAACCAGCAAAATTCA 60.239 38.462 0.00 0.00 0.00 2.57
2402 3270 6.159293 CCCTAGAAAGAAACCAGCAAAATTC 58.841 40.000 0.00 0.00 0.00 2.17
2404 3272 4.021104 GCCCTAGAAAGAAACCAGCAAAAT 60.021 41.667 0.00 0.00 0.00 1.82
2437 3305 7.251704 ACAGACGCTATATCTTGAAATTTGG 57.748 36.000 0.00 0.00 0.00 3.28
2482 3350 3.884895 TCTCCGTACTTCGTGGGTATAA 58.115 45.455 0.00 0.00 37.94 0.98
2627 3496 6.238759 GGACCTGGAACATTTGATACAATAGC 60.239 42.308 0.00 0.00 38.20 2.97
2631 3500 4.991776 TGGACCTGGAACATTTGATACAA 58.008 39.130 0.00 0.00 38.20 2.41
2739 3921 8.477984 TTTGCCTGATTTCTTGCAATTATAAC 57.522 30.769 0.00 0.00 42.66 1.89
2769 3951 5.453198 CCTGTTTACTTCTTTTTGCATGGGT 60.453 40.000 0.00 0.00 0.00 4.51
2782 3964 6.474427 GCACAAAAAGGTAACCTGTTTACTTC 59.526 38.462 0.00 0.00 38.88 3.01
2847 4029 1.302192 ATGTAGGTTGCGTTGCCGT 60.302 52.632 0.00 0.00 36.15 5.68
2969 4152 4.701651 TGCACATTCTTCATACAGGGAAAG 59.298 41.667 0.00 0.00 0.00 2.62
2973 4156 3.614092 ACTGCACATTCTTCATACAGGG 58.386 45.455 0.00 0.00 0.00 4.45
2976 4159 4.910195 AGGAACTGCACATTCTTCATACA 58.090 39.130 6.04 0.00 37.18 2.29
3128 4487 2.679716 GCTCTGGCCCATCACCTT 59.320 61.111 0.00 0.00 0.00 3.50
3167 4526 3.010420 GCAGGAAGGGTCAGAACATAAC 58.990 50.000 0.00 0.00 0.00 1.89
3180 4539 5.310409 TCCCAATTATAAGAGCAGGAAGG 57.690 43.478 0.00 0.00 0.00 3.46
3240 4599 4.229876 GCAAAATTCCTTGTCCGAAGAAG 58.770 43.478 0.00 0.00 0.00 2.85
3268 4627 4.565564 AGTTTTTAGCGCGTACCTCAATAG 59.434 41.667 8.43 0.00 0.00 1.73
3305 4664 1.541233 CCGATGCTGGTTAGATCACCC 60.541 57.143 0.00 0.00 35.73 4.61
3349 4708 2.781923 CATCACATGGTTCACTGTCCA 58.218 47.619 0.00 0.00 38.14 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.