Multiple sequence alignment - TraesCS1D01G252200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G252200 chr1D 100.000 3349 0 0 1 3349 344598948 344595600 0.000000e+00 6185.0
1 TraesCS1D01G252200 chr1A 94.903 1295 47 7 2071 3349 444128276 444126985 0.000000e+00 2008.0
2 TraesCS1D01G252200 chr1A 90.415 1252 56 28 775 1985 444129811 444128583 0.000000e+00 1589.0
3 TraesCS1D01G252200 chr1A 83.835 266 24 8 313 561 285590028 285590291 5.590000e-58 235.0
4 TraesCS1D01G252200 chr1A 94.406 143 8 0 597 739 464856088 464856230 1.560000e-53 220.0
5 TraesCS1D01G252200 chr1A 88.608 79 9 0 82 160 364654493 364654571 2.750000e-16 97.1
6 TraesCS1D01G252200 chr1B 95.000 960 34 6 2402 3349 466088810 466089767 0.000000e+00 1495.0
7 TraesCS1D01G252200 chr1B 91.324 899 42 12 1514 2399 466087723 466088598 0.000000e+00 1195.0
8 TraesCS1D01G252200 chr1B 91.667 732 35 13 797 1514 466086975 466087694 0.000000e+00 990.0
9 TraesCS1D01G252200 chr1B 89.773 88 8 1 83 170 623918579 623918493 9.820000e-21 111.0
10 TraesCS1D01G252200 chr5D 83.582 268 23 14 313 561 478597506 478597241 7.230000e-57 231.0
11 TraesCS1D01G252200 chr5D 86.528 193 18 6 600 787 443651720 443651531 4.380000e-49 206.0
12 TraesCS1D01G252200 chr5D 91.837 147 11 1 600 746 42084211 42084356 1.580000e-48 204.0
13 TraesCS1D01G252200 chr6D 94.595 148 8 0 597 744 408691609 408691756 2.600000e-56 230.0
14 TraesCS1D01G252200 chr6D 82.772 267 26 12 313 561 82632184 82631920 1.560000e-53 220.0
15 TraesCS1D01G252200 chr6D 84.034 238 20 7 313 533 460172484 460172720 2.620000e-51 213.0
16 TraesCS1D01G252200 chr6D 96.694 121 4 0 166 286 188888119 188888239 5.670000e-48 202.0
17 TraesCS1D01G252200 chr6D 81.579 266 28 10 313 561 131695113 131694852 2.040000e-47 200.0
18 TraesCS1D01G252200 chr6D 96.667 120 4 0 165 284 305136408 305136527 2.040000e-47 200.0
19 TraesCS1D01G252200 chr6D 78.827 307 31 12 313 599 398840654 398840946 3.430000e-40 176.0
20 TraesCS1D01G252200 chr5B 93.878 147 9 0 600 746 446430593 446430447 4.350000e-54 222.0
21 TraesCS1D01G252200 chr5B 82.661 248 25 8 331 561 254105922 254106168 1.580000e-48 204.0
22 TraesCS1D01G252200 chr7D 80.984 305 35 12 313 598 517003760 517004060 1.560000e-53 220.0
23 TraesCS1D01G252200 chr7D 92.000 150 11 1 597 746 135377106 135376958 3.390000e-50 209.0
24 TraesCS1D01G252200 chr4D 93.243 148 10 0 597 744 145579614 145579761 5.630000e-53 219.0
25 TraesCS1D01G252200 chrUn 92.667 150 11 0 597 746 45773869 45773720 2.020000e-52 217.0
26 TraesCS1D01G252200 chrUn 90.323 93 7 2 83 175 12448979 12448889 1.630000e-23 121.0
27 TraesCS1D01G252200 chr3D 92.667 150 11 0 597 746 592869350 592869201 2.020000e-52 217.0
28 TraesCS1D01G252200 chr3D 80.065 306 37 11 313 598 239713035 239712734 4.380000e-49 206.0
29 TraesCS1D01G252200 chr3D 94.488 127 6 1 168 294 5478175 5478050 9.480000e-46 195.0
30 TraesCS1D01G252200 chr3D 93.902 82 5 0 88 169 481710201 481710282 1.260000e-24 124.0
31 TraesCS1D01G252200 chr2D 82.331 266 29 13 313 561 13623266 13623002 7.280000e-52 215.0
32 TraesCS1D01G252200 chr2D 80.731 301 36 17 318 599 36218473 36218770 7.280000e-52 215.0
33 TraesCS1D01G252200 chr2D 97.521 121 2 1 165 284 7396589 7396469 4.380000e-49 206.0
34 TraesCS1D01G252200 chr2D 90.323 93 7 2 83 175 12325357 12325447 1.630000e-23 121.0
35 TraesCS1D01G252200 chr7A 97.479 119 3 0 167 285 632588269 632588151 1.580000e-48 204.0
36 TraesCS1D01G252200 chr3B 97.479 119 3 0 166 284 564169699 564169817 1.580000e-48 204.0
37 TraesCS1D01G252200 chr2B 96.721 122 4 0 164 285 766070370 766070249 1.580000e-48 204.0
38 TraesCS1D01G252200 chr6B 91.549 142 10 2 144 285 204057800 204057939 9.480000e-46 195.0
39 TraesCS1D01G252200 chr6A 92.537 134 8 2 160 292 537483628 537483496 1.230000e-44 191.0
40 TraesCS1D01G252200 chr6A 88.235 136 16 0 313 448 491000616 491000481 2.670000e-36 163.0
41 TraesCS1D01G252200 chr6A 76.721 305 36 20 313 599 477378322 477378609 1.620000e-28 137.0
42 TraesCS1D01G252200 chr7B 93.103 87 4 2 83 169 482815823 482815739 3.510000e-25 126.0
43 TraesCS1D01G252200 chr7B 88.095 84 7 3 83 165 2230561 2230642 2.750000e-16 97.1
44 TraesCS1D01G252200 chr3A 93.103 87 5 1 83 169 624858012 624858097 3.510000e-25 126.0
45 TraesCS1D01G252200 chr2A 91.566 83 6 1 83 165 3580470 3580389 2.730000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G252200 chr1D 344595600 344598948 3348 True 6185.000000 6185 100.000000 1 3349 1 chr1D.!!$R1 3348
1 TraesCS1D01G252200 chr1A 444126985 444129811 2826 True 1798.500000 2008 92.659000 775 3349 2 chr1A.!!$R1 2574
2 TraesCS1D01G252200 chr1B 466086975 466089767 2792 False 1226.666667 1495 92.663667 797 3349 3 chr1B.!!$F1 2552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.032813 ATACTCCCTCCGTCCCGAAA 60.033 55.0 0.0 0.0 0.0 3.46 F
189 190 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.0 0.0 0.0 0.0 2.12 F
487 488 0.040499 GCTCATTGGGGGTTGGGTTA 59.960 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2257 0.179018 GCACCCCTTGAGTGAACACT 60.179 55.0 7.20 7.20 45.84 3.55 R
2043 2258 1.172812 GGCACCCCTTGAGTGAACAC 61.173 60.0 0.00 0.00 37.42 3.32 R
2351 2623 0.533491 TACCTGTACGAAGGCGCATT 59.467 50.0 7.18 7.18 41.46 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.566824 TTGCGGAAATCTTCAGGGC 58.433 52.632 0.00 0.00 0.00 5.19
19 20 0.038166 TTGCGGAAATCTTCAGGGCT 59.962 50.000 0.00 0.00 0.00 5.19
20 21 0.038166 TGCGGAAATCTTCAGGGCTT 59.962 50.000 0.00 0.00 0.00 4.35
21 22 1.177401 GCGGAAATCTTCAGGGCTTT 58.823 50.000 0.00 0.00 0.00 3.51
22 23 1.546029 GCGGAAATCTTCAGGGCTTTT 59.454 47.619 0.00 0.00 0.00 2.27
23 24 2.416027 GCGGAAATCTTCAGGGCTTTTC 60.416 50.000 0.00 0.00 0.00 2.29
24 25 3.084786 CGGAAATCTTCAGGGCTTTTCT 58.915 45.455 0.00 0.00 0.00 2.52
25 26 3.507622 CGGAAATCTTCAGGGCTTTTCTT 59.492 43.478 0.00 0.00 0.00 2.52
26 27 4.021981 CGGAAATCTTCAGGGCTTTTCTTT 60.022 41.667 0.00 0.00 0.00 2.52
27 28 5.509670 CGGAAATCTTCAGGGCTTTTCTTTT 60.510 40.000 0.00 0.00 0.00 2.27
28 29 6.291377 GGAAATCTTCAGGGCTTTTCTTTTT 58.709 36.000 0.00 0.00 0.00 1.94
29 30 6.425114 GGAAATCTTCAGGGCTTTTCTTTTTC 59.575 38.462 0.00 0.00 0.00 2.29
30 31 6.484364 AATCTTCAGGGCTTTTCTTTTTCA 57.516 33.333 0.00 0.00 0.00 2.69
31 32 6.676990 ATCTTCAGGGCTTTTCTTTTTCAT 57.323 33.333 0.00 0.00 0.00 2.57
32 33 6.089249 TCTTCAGGGCTTTTCTTTTTCATC 57.911 37.500 0.00 0.00 0.00 2.92
33 34 4.503741 TCAGGGCTTTTCTTTTTCATCG 57.496 40.909 0.00 0.00 0.00 3.84
34 35 4.141287 TCAGGGCTTTTCTTTTTCATCGA 58.859 39.130 0.00 0.00 0.00 3.59
35 36 4.582656 TCAGGGCTTTTCTTTTTCATCGAA 59.417 37.500 0.00 0.00 0.00 3.71
36 37 5.243730 TCAGGGCTTTTCTTTTTCATCGAAT 59.756 36.000 0.00 0.00 0.00 3.34
37 38 5.574443 CAGGGCTTTTCTTTTTCATCGAATC 59.426 40.000 0.00 0.00 0.00 2.52
38 39 5.478332 AGGGCTTTTCTTTTTCATCGAATCT 59.522 36.000 0.00 0.00 0.00 2.40
39 40 6.015095 AGGGCTTTTCTTTTTCATCGAATCTT 60.015 34.615 0.00 0.00 0.00 2.40
40 41 6.309009 GGGCTTTTCTTTTTCATCGAATCTTC 59.691 38.462 0.00 0.00 0.00 2.87
54 55 4.056050 CGAATCTTCGGGTTATTGGTAGG 58.944 47.826 4.44 0.00 46.30 3.18
55 56 2.994186 TCTTCGGGTTATTGGTAGGC 57.006 50.000 0.00 0.00 0.00 3.93
56 57 1.137479 TCTTCGGGTTATTGGTAGGCG 59.863 52.381 0.00 0.00 0.00 5.52
57 58 1.137479 CTTCGGGTTATTGGTAGGCGA 59.863 52.381 0.00 0.00 0.00 5.54
58 59 0.748450 TCGGGTTATTGGTAGGCGAG 59.252 55.000 0.00 0.00 0.00 5.03
59 60 0.462789 CGGGTTATTGGTAGGCGAGT 59.537 55.000 0.00 0.00 0.00 4.18
60 61 1.805120 CGGGTTATTGGTAGGCGAGTG 60.805 57.143 0.00 0.00 0.00 3.51
61 62 1.296727 GGTTATTGGTAGGCGAGTGC 58.703 55.000 0.00 0.00 41.71 4.40
62 63 1.134491 GGTTATTGGTAGGCGAGTGCT 60.134 52.381 0.00 0.00 42.25 4.40
63 64 2.629051 GTTATTGGTAGGCGAGTGCTT 58.371 47.619 0.00 0.00 42.25 3.91
64 65 2.309528 TATTGGTAGGCGAGTGCTTG 57.690 50.000 0.00 0.00 42.25 4.01
65 66 0.324943 ATTGGTAGGCGAGTGCTTGT 59.675 50.000 0.00 0.00 42.25 3.16
66 67 0.602638 TTGGTAGGCGAGTGCTTGTG 60.603 55.000 0.00 0.00 42.25 3.33
67 68 1.292223 GGTAGGCGAGTGCTTGTGA 59.708 57.895 0.00 0.00 42.25 3.58
68 69 0.737715 GGTAGGCGAGTGCTTGTGAG 60.738 60.000 0.00 0.00 42.25 3.51
69 70 0.038159 GTAGGCGAGTGCTTGTGAGT 60.038 55.000 0.00 0.00 42.25 3.41
70 71 1.201647 GTAGGCGAGTGCTTGTGAGTA 59.798 52.381 0.00 0.00 42.25 2.59
71 72 0.898320 AGGCGAGTGCTTGTGAGTAT 59.102 50.000 0.00 0.00 42.25 2.12
72 73 1.002366 GGCGAGTGCTTGTGAGTATG 58.998 55.000 0.00 0.00 42.25 2.39
73 74 1.673033 GGCGAGTGCTTGTGAGTATGT 60.673 52.381 0.00 0.00 42.25 2.29
74 75 1.391485 GCGAGTGCTTGTGAGTATGTG 59.609 52.381 0.00 0.00 38.39 3.21
75 76 2.677199 CGAGTGCTTGTGAGTATGTGT 58.323 47.619 0.00 0.00 0.00 3.72
76 77 2.409715 CGAGTGCTTGTGAGTATGTGTG 59.590 50.000 0.00 0.00 0.00 3.82
77 78 2.146342 AGTGCTTGTGAGTATGTGTGC 58.854 47.619 0.00 0.00 0.00 4.57
78 79 1.872952 GTGCTTGTGAGTATGTGTGCA 59.127 47.619 0.00 0.00 0.00 4.57
79 80 2.096069 GTGCTTGTGAGTATGTGTGCAG 60.096 50.000 0.00 0.00 0.00 4.41
80 81 1.135859 GCTTGTGAGTATGTGTGCAGC 60.136 52.381 0.00 0.00 0.00 5.25
81 82 2.145536 CTTGTGAGTATGTGTGCAGCA 58.854 47.619 0.00 0.00 0.00 4.41
82 83 2.477845 TGTGAGTATGTGTGCAGCAT 57.522 45.000 0.00 8.50 0.00 3.79
83 84 3.608316 TGTGAGTATGTGTGCAGCATA 57.392 42.857 0.00 6.77 0.00 3.14
84 85 3.261580 TGTGAGTATGTGTGCAGCATAC 58.738 45.455 23.47 23.47 45.29 2.39
88 89 2.213499 GTATGTGTGCAGCATACTCCC 58.787 52.381 21.51 6.82 43.03 4.30
89 90 0.914644 ATGTGTGCAGCATACTCCCT 59.085 50.000 21.51 3.21 0.00 4.20
90 91 0.250234 TGTGTGCAGCATACTCCCTC 59.750 55.000 21.51 0.00 0.00 4.30
91 92 0.462759 GTGTGCAGCATACTCCCTCC 60.463 60.000 14.72 0.00 0.00 4.30
92 93 0.909133 TGTGCAGCATACTCCCTCCA 60.909 55.000 0.00 0.00 0.00 3.86
93 94 0.471617 GTGCAGCATACTCCCTCCAT 59.528 55.000 0.00 0.00 0.00 3.41
94 95 1.133976 GTGCAGCATACTCCCTCCATT 60.134 52.381 0.00 0.00 0.00 3.16
95 96 1.565759 TGCAGCATACTCCCTCCATTT 59.434 47.619 0.00 0.00 0.00 2.32
96 97 2.025037 TGCAGCATACTCCCTCCATTTT 60.025 45.455 0.00 0.00 0.00 1.82
97 98 3.026694 GCAGCATACTCCCTCCATTTTT 58.973 45.455 0.00 0.00 0.00 1.94
98 99 4.207165 GCAGCATACTCCCTCCATTTTTA 58.793 43.478 0.00 0.00 0.00 1.52
99 100 4.829492 GCAGCATACTCCCTCCATTTTTAT 59.171 41.667 0.00 0.00 0.00 1.40
100 101 5.302823 GCAGCATACTCCCTCCATTTTTATT 59.697 40.000 0.00 0.00 0.00 1.40
101 102 6.183360 GCAGCATACTCCCTCCATTTTTATTT 60.183 38.462 0.00 0.00 0.00 1.40
102 103 7.014230 GCAGCATACTCCCTCCATTTTTATTTA 59.986 37.037 0.00 0.00 0.00 1.40
103 104 8.352942 CAGCATACTCCCTCCATTTTTATTTAC 58.647 37.037 0.00 0.00 0.00 2.01
104 105 8.282256 AGCATACTCCCTCCATTTTTATTTACT 58.718 33.333 0.00 0.00 0.00 2.24
105 106 8.568794 GCATACTCCCTCCATTTTTATTTACTC 58.431 37.037 0.00 0.00 0.00 2.59
106 107 9.067986 CATACTCCCTCCATTTTTATTTACTCC 57.932 37.037 0.00 0.00 0.00 3.85
107 108 6.120220 ACTCCCTCCATTTTTATTTACTCCG 58.880 40.000 0.00 0.00 0.00 4.63
108 109 4.885325 TCCCTCCATTTTTATTTACTCCGC 59.115 41.667 0.00 0.00 0.00 5.54
109 110 4.642885 CCCTCCATTTTTATTTACTCCGCA 59.357 41.667 0.00 0.00 0.00 5.69
110 111 5.301805 CCCTCCATTTTTATTTACTCCGCAT 59.698 40.000 0.00 0.00 0.00 4.73
111 112 6.488683 CCCTCCATTTTTATTTACTCCGCATA 59.511 38.462 0.00 0.00 0.00 3.14
112 113 7.176690 CCCTCCATTTTTATTTACTCCGCATAT 59.823 37.037 0.00 0.00 0.00 1.78
113 114 8.576442 CCTCCATTTTTATTTACTCCGCATATT 58.424 33.333 0.00 0.00 0.00 1.28
177 178 8.419442 AGTTTGTAGTAAAATATACTCCCTCCG 58.581 37.037 0.00 0.00 0.00 4.63
178 179 7.902920 TTGTAGTAAAATATACTCCCTCCGT 57.097 36.000 0.00 0.00 0.00 4.69
179 180 7.516198 TGTAGTAAAATATACTCCCTCCGTC 57.484 40.000 0.00 0.00 0.00 4.79
180 181 6.491403 TGTAGTAAAATATACTCCCTCCGTCC 59.509 42.308 0.00 0.00 0.00 4.79
181 182 4.837298 AGTAAAATATACTCCCTCCGTCCC 59.163 45.833 0.00 0.00 0.00 4.46
182 183 1.920610 AATATACTCCCTCCGTCCCG 58.079 55.000 0.00 0.00 0.00 5.14
183 184 1.070604 ATATACTCCCTCCGTCCCGA 58.929 55.000 0.00 0.00 0.00 5.14
184 185 0.846015 TATACTCCCTCCGTCCCGAA 59.154 55.000 0.00 0.00 0.00 4.30
185 186 0.032813 ATACTCCCTCCGTCCCGAAA 60.033 55.000 0.00 0.00 0.00 3.46
186 187 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
187 188 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
188 189 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
189 190 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
190 191 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
191 192 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
192 193 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
193 194 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
194 195 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
203 204 5.143916 CGAAATACTTGTCGGAGAAATGG 57.856 43.478 0.00 0.00 39.69 3.16
204 205 4.868171 CGAAATACTTGTCGGAGAAATGGA 59.132 41.667 0.00 0.00 39.69 3.41
205 206 5.523916 CGAAATACTTGTCGGAGAAATGGAT 59.476 40.000 0.00 0.00 39.69 3.41
206 207 6.700081 CGAAATACTTGTCGGAGAAATGGATA 59.300 38.462 0.00 0.00 39.69 2.59
207 208 7.223971 CGAAATACTTGTCGGAGAAATGGATAA 59.776 37.037 0.00 0.00 39.69 1.75
208 209 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
209 210 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
210 211 8.980481 ATACTTGTCGGAGAAATGGATAAAAT 57.020 30.769 0.00 0.00 39.69 1.82
211 212 7.703058 ACTTGTCGGAGAAATGGATAAAATT 57.297 32.000 0.00 0.00 39.69 1.82
212 213 7.538575 ACTTGTCGGAGAAATGGATAAAATTG 58.461 34.615 0.00 0.00 39.69 2.32
213 214 6.449635 TGTCGGAGAAATGGATAAAATTGG 57.550 37.500 0.00 0.00 39.69 3.16
214 215 6.184068 TGTCGGAGAAATGGATAAAATTGGA 58.816 36.000 0.00 0.00 39.69 3.53
215 216 6.833416 TGTCGGAGAAATGGATAAAATTGGAT 59.167 34.615 0.00 0.00 39.69 3.41
216 217 7.141363 GTCGGAGAAATGGATAAAATTGGATG 58.859 38.462 0.00 0.00 39.69 3.51
217 218 6.833416 TCGGAGAAATGGATAAAATTGGATGT 59.167 34.615 0.00 0.00 0.00 3.06
218 219 7.996066 TCGGAGAAATGGATAAAATTGGATGTA 59.004 33.333 0.00 0.00 0.00 2.29
219 220 8.796475 CGGAGAAATGGATAAAATTGGATGTAT 58.204 33.333 0.00 0.00 0.00 2.29
256 257 9.956640 AATACATCTAGATTCATCCATTTCTCC 57.043 33.333 1.33 0.00 0.00 3.71
257 258 6.462500 ACATCTAGATTCATCCATTTCTCCG 58.538 40.000 1.33 0.00 0.00 4.63
258 259 6.268617 ACATCTAGATTCATCCATTTCTCCGA 59.731 38.462 1.33 0.00 0.00 4.55
259 260 6.090483 TCTAGATTCATCCATTTCTCCGAC 57.910 41.667 0.00 0.00 0.00 4.79
260 261 4.760530 AGATTCATCCATTTCTCCGACA 57.239 40.909 0.00 0.00 0.00 4.35
261 262 5.102953 AGATTCATCCATTTCTCCGACAA 57.897 39.130 0.00 0.00 0.00 3.18
262 263 5.121811 AGATTCATCCATTTCTCCGACAAG 58.878 41.667 0.00 0.00 0.00 3.16
263 264 3.981071 TCATCCATTTCTCCGACAAGT 57.019 42.857 0.00 0.00 0.00 3.16
264 265 5.414789 TTCATCCATTTCTCCGACAAGTA 57.585 39.130 0.00 0.00 0.00 2.24
265 266 5.614324 TCATCCATTTCTCCGACAAGTAT 57.386 39.130 0.00 0.00 0.00 2.12
266 267 5.989477 TCATCCATTTCTCCGACAAGTATT 58.011 37.500 0.00 0.00 0.00 1.89
267 268 6.414732 TCATCCATTTCTCCGACAAGTATTT 58.585 36.000 0.00 0.00 0.00 1.40
268 269 6.538742 TCATCCATTTCTCCGACAAGTATTTC 59.461 38.462 0.00 0.00 0.00 2.17
269 270 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
270 271 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
271 272 3.947910 TTCTCCGACAAGTATTTCCGT 57.052 42.857 0.00 0.00 0.00 4.69
272 273 5.389859 TTTCTCCGACAAGTATTTCCGTA 57.610 39.130 0.00 0.00 0.00 4.02
273 274 4.361451 TCTCCGACAAGTATTTCCGTAC 57.639 45.455 0.00 0.00 0.00 3.67
274 275 3.103738 CTCCGACAAGTATTTCCGTACG 58.896 50.000 8.69 8.69 0.00 3.67
275 276 2.159393 TCCGACAAGTATTTCCGTACGG 60.159 50.000 28.66 28.66 39.30 4.02
276 277 2.159393 CCGACAAGTATTTCCGTACGGA 60.159 50.000 32.61 32.61 43.52 4.69
277 278 3.103738 CGACAAGTATTTCCGTACGGAG 58.896 50.000 33.67 23.26 46.06 4.63
278 279 3.442100 GACAAGTATTTCCGTACGGAGG 58.558 50.000 33.67 20.29 46.06 4.30
279 280 2.167075 ACAAGTATTTCCGTACGGAGGG 59.833 50.000 33.67 20.89 46.06 4.30
280 281 2.428171 CAAGTATTTCCGTACGGAGGGA 59.572 50.000 33.67 24.13 46.06 4.20
281 282 2.305009 AGTATTTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
282 283 2.027385 GTATTTCCGTACGGAGGGAGT 58.973 52.381 33.67 20.06 46.06 3.85
283 284 2.442236 ATTTCCGTACGGAGGGAGTA 57.558 50.000 33.67 17.87 46.06 2.59
284 285 2.442236 TTTCCGTACGGAGGGAGTAT 57.558 50.000 33.67 0.00 46.06 2.12
285 286 2.442236 TTCCGTACGGAGGGAGTATT 57.558 50.000 33.67 0.00 46.06 1.89
286 287 3.576078 TTCCGTACGGAGGGAGTATTA 57.424 47.619 33.67 15.64 46.06 0.98
287 288 3.576078 TCCGTACGGAGGGAGTATTAA 57.424 47.619 32.61 6.35 39.76 1.40
288 289 3.214328 TCCGTACGGAGGGAGTATTAAC 58.786 50.000 32.61 0.00 39.76 2.01
289 290 2.951642 CCGTACGGAGGGAGTATTAACA 59.048 50.000 30.64 0.00 37.50 2.41
290 291 3.571401 CCGTACGGAGGGAGTATTAACAT 59.429 47.826 30.64 0.00 37.50 2.71
291 292 4.761739 CCGTACGGAGGGAGTATTAACATA 59.238 45.833 30.64 0.00 37.50 2.29
292 293 5.416952 CCGTACGGAGGGAGTATTAACATAT 59.583 44.000 30.64 0.00 37.50 1.78
293 294 6.599244 CCGTACGGAGGGAGTATTAACATATA 59.401 42.308 30.64 0.00 37.50 0.86
294 295 7.414540 CCGTACGGAGGGAGTATTAACATATAC 60.415 44.444 30.64 0.00 37.50 1.47
295 296 7.119699 CGTACGGAGGGAGTATTAACATATACA 59.880 40.741 7.57 0.00 34.19 2.29
296 297 7.224522 ACGGAGGGAGTATTAACATATACAC 57.775 40.000 0.00 0.00 34.19 2.90
297 298 7.008941 ACGGAGGGAGTATTAACATATACACT 58.991 38.462 0.00 0.00 34.19 3.55
298 299 8.166061 ACGGAGGGAGTATTAACATATACACTA 58.834 37.037 0.00 0.00 34.19 2.74
299 300 8.457261 CGGAGGGAGTATTAACATATACACTAC 58.543 40.741 0.00 0.00 34.19 2.73
300 301 9.531158 GGAGGGAGTATTAACATATACACTACT 57.469 37.037 0.00 0.00 34.19 2.57
312 313 8.198807 ACATATACACTACTACCAAATACCCC 57.801 38.462 0.00 0.00 0.00 4.95
313 314 8.014859 ACATATACACTACTACCAAATACCCCT 58.985 37.037 0.00 0.00 0.00 4.79
314 315 6.990908 ATACACTACTACCAAATACCCCTC 57.009 41.667 0.00 0.00 0.00 4.30
315 316 4.035814 ACACTACTACCAAATACCCCTCC 58.964 47.826 0.00 0.00 0.00 4.30
316 317 3.390311 CACTACTACCAAATACCCCTCCC 59.610 52.174 0.00 0.00 0.00 4.30
317 318 1.903043 ACTACCAAATACCCCTCCCC 58.097 55.000 0.00 0.00 0.00 4.81
318 319 1.146452 CTACCAAATACCCCTCCCCC 58.854 60.000 0.00 0.00 0.00 5.40
332 333 2.815308 CCCCCGTCCGATGAAGAG 59.185 66.667 0.00 0.00 0.00 2.85
333 334 2.058595 CCCCCGTCCGATGAAGAGT 61.059 63.158 0.00 0.00 0.00 3.24
334 335 1.141881 CCCCGTCCGATGAAGAGTG 59.858 63.158 0.00 0.00 0.00 3.51
335 336 1.605058 CCCCGTCCGATGAAGAGTGT 61.605 60.000 0.00 0.00 0.00 3.55
336 337 1.100510 CCCGTCCGATGAAGAGTGTA 58.899 55.000 0.00 0.00 0.00 2.90
337 338 1.202268 CCCGTCCGATGAAGAGTGTAC 60.202 57.143 0.00 0.00 0.00 2.90
338 339 1.471287 CCGTCCGATGAAGAGTGTACA 59.529 52.381 0.00 0.00 0.00 2.90
339 340 2.516923 CGTCCGATGAAGAGTGTACAC 58.483 52.381 18.56 18.56 0.00 2.90
340 341 2.731341 CGTCCGATGAAGAGTGTACACC 60.731 54.545 22.28 13.56 0.00 4.16
341 342 1.822990 TCCGATGAAGAGTGTACACCC 59.177 52.381 22.28 11.27 0.00 4.61
342 343 1.469251 CCGATGAAGAGTGTACACCCG 60.469 57.143 22.28 13.20 0.00 5.28
343 344 1.469251 CGATGAAGAGTGTACACCCGG 60.469 57.143 22.28 0.00 0.00 5.73
344 345 1.549170 GATGAAGAGTGTACACCCGGT 59.451 52.381 22.28 3.57 0.00 5.28
345 346 1.416243 TGAAGAGTGTACACCCGGTT 58.584 50.000 22.28 10.48 0.00 4.44
346 347 1.764134 TGAAGAGTGTACACCCGGTTT 59.236 47.619 22.28 9.63 0.00 3.27
347 348 2.964464 TGAAGAGTGTACACCCGGTTTA 59.036 45.455 22.28 5.19 0.00 2.01
348 349 3.387374 TGAAGAGTGTACACCCGGTTTAA 59.613 43.478 22.28 1.05 0.00 1.52
349 350 4.141756 TGAAGAGTGTACACCCGGTTTAAA 60.142 41.667 22.28 0.00 0.00 1.52
350 351 4.420522 AGAGTGTACACCCGGTTTAAAA 57.579 40.909 22.28 0.00 0.00 1.52
351 352 4.779696 AGAGTGTACACCCGGTTTAAAAA 58.220 39.130 22.28 0.00 0.00 1.94
352 353 5.379187 AGAGTGTACACCCGGTTTAAAAAT 58.621 37.500 22.28 0.00 0.00 1.82
353 354 5.829391 AGAGTGTACACCCGGTTTAAAAATT 59.171 36.000 22.28 0.00 0.00 1.82
354 355 6.321945 AGAGTGTACACCCGGTTTAAAAATTT 59.678 34.615 22.28 0.00 0.00 1.82
355 356 6.506147 AGTGTACACCCGGTTTAAAAATTTC 58.494 36.000 22.28 0.00 0.00 2.17
356 357 6.321945 AGTGTACACCCGGTTTAAAAATTTCT 59.678 34.615 22.28 0.00 0.00 2.52
357 358 6.979817 GTGTACACCCGGTTTAAAAATTTCTT 59.020 34.615 15.42 0.00 0.00 2.52
358 359 7.167968 GTGTACACCCGGTTTAAAAATTTCTTC 59.832 37.037 15.42 0.00 0.00 2.87
359 360 6.223351 ACACCCGGTTTAAAAATTTCTTCA 57.777 33.333 0.00 0.00 0.00 3.02
360 361 6.044046 ACACCCGGTTTAAAAATTTCTTCAC 58.956 36.000 0.00 0.00 0.00 3.18
361 362 6.043411 CACCCGGTTTAAAAATTTCTTCACA 58.957 36.000 0.00 0.00 0.00 3.58
362 363 6.535508 CACCCGGTTTAAAAATTTCTTCACAA 59.464 34.615 0.00 0.00 0.00 3.33
363 364 7.064728 CACCCGGTTTAAAAATTTCTTCACAAA 59.935 33.333 0.00 0.00 0.00 2.83
364 365 7.606839 ACCCGGTTTAAAAATTTCTTCACAAAA 59.393 29.630 0.00 0.00 0.00 2.44
365 366 8.119845 CCCGGTTTAAAAATTTCTTCACAAAAG 58.880 33.333 0.00 0.00 0.00 2.27
366 367 8.874816 CCGGTTTAAAAATTTCTTCACAAAAGA 58.125 29.630 0.00 0.00 0.00 2.52
367 368 9.900264 CGGTTTAAAAATTTCTTCACAAAAGAG 57.100 29.630 0.00 0.00 0.00 2.85
375 376 9.788960 AAATTTCTTCACAAAAGAGTGTACTTC 57.211 29.630 0.00 0.00 40.37 3.01
376 377 8.738645 ATTTCTTCACAAAAGAGTGTACTTCT 57.261 30.769 0.00 0.00 40.37 2.85
377 378 9.832445 ATTTCTTCACAAAAGAGTGTACTTCTA 57.168 29.630 0.00 0.00 40.37 2.10
378 379 9.832445 TTTCTTCACAAAAGAGTGTACTTCTAT 57.168 29.630 0.00 0.00 40.37 1.98
379 380 9.477484 TTCTTCACAAAAGAGTGTACTTCTATC 57.523 33.333 0.00 0.00 40.37 2.08
380 381 8.861086 TCTTCACAAAAGAGTGTACTTCTATCT 58.139 33.333 0.00 0.00 40.37 1.98
381 382 9.482627 CTTCACAAAAGAGTGTACTTCTATCTT 57.517 33.333 0.00 0.00 40.37 2.40
382 383 9.477484 TTCACAAAAGAGTGTACTTCTATCTTC 57.523 33.333 0.00 0.00 40.37 2.87
383 384 8.088981 TCACAAAAGAGTGTACTTCTATCTTCC 58.911 37.037 0.00 0.00 40.37 3.46
384 385 7.332182 CACAAAAGAGTGTACTTCTATCTTCCC 59.668 40.741 0.00 0.00 34.83 3.97
385 386 7.016268 ACAAAAGAGTGTACTTCTATCTTCCCA 59.984 37.037 0.00 0.00 30.16 4.37
386 387 7.554959 AAAGAGTGTACTTCTATCTTCCCAA 57.445 36.000 0.00 0.00 30.16 4.12
387 388 7.741554 AAGAGTGTACTTCTATCTTCCCAAT 57.258 36.000 0.00 0.00 0.00 3.16
388 389 7.118496 AGAGTGTACTTCTATCTTCCCAATG 57.882 40.000 0.00 0.00 0.00 2.82
389 390 5.675538 AGTGTACTTCTATCTTCCCAATGC 58.324 41.667 0.00 0.00 0.00 3.56
390 391 5.189736 AGTGTACTTCTATCTTCCCAATGCA 59.810 40.000 0.00 0.00 0.00 3.96
391 392 6.058183 GTGTACTTCTATCTTCCCAATGCAT 58.942 40.000 0.00 0.00 0.00 3.96
392 393 6.543831 GTGTACTTCTATCTTCCCAATGCATT 59.456 38.462 5.99 5.99 0.00 3.56
393 394 7.067494 GTGTACTTCTATCTTCCCAATGCATTT 59.933 37.037 9.83 0.00 0.00 2.32
394 395 7.615365 TGTACTTCTATCTTCCCAATGCATTTT 59.385 33.333 9.83 0.00 0.00 1.82
395 396 9.120538 GTACTTCTATCTTCCCAATGCATTTTA 57.879 33.333 9.83 0.00 0.00 1.52
396 397 8.593945 ACTTCTATCTTCCCAATGCATTTTAA 57.406 30.769 9.83 3.58 0.00 1.52
397 398 9.034800 ACTTCTATCTTCCCAATGCATTTTAAA 57.965 29.630 9.83 3.25 0.00 1.52
398 399 9.525409 CTTCTATCTTCCCAATGCATTTTAAAG 57.475 33.333 9.83 12.67 0.00 1.85
399 400 8.593945 TCTATCTTCCCAATGCATTTTAAAGT 57.406 30.769 9.83 6.89 0.00 2.66
400 401 9.693739 TCTATCTTCCCAATGCATTTTAAAGTA 57.306 29.630 9.83 7.53 0.00 2.24
401 402 9.956720 CTATCTTCCCAATGCATTTTAAAGTAG 57.043 33.333 9.83 11.99 0.00 2.57
402 403 8.593945 ATCTTCCCAATGCATTTTAAAGTAGA 57.406 30.769 9.83 6.94 0.00 2.59
403 404 8.415950 TCTTCCCAATGCATTTTAAAGTAGAA 57.584 30.769 9.83 3.31 0.00 2.10
404 405 8.865090 TCTTCCCAATGCATTTTAAAGTAGAAA 58.135 29.630 9.83 0.00 0.00 2.52
405 406 9.487790 CTTCCCAATGCATTTTAAAGTAGAAAA 57.512 29.630 9.83 0.00 0.00 2.29
406 407 9.838339 TTCCCAATGCATTTTAAAGTAGAAAAA 57.162 25.926 9.83 0.00 30.03 1.94
429 430 7.568199 AAAATATTTCTCCCTTATCACACGG 57.432 36.000 0.10 0.00 0.00 4.94
430 431 5.888982 ATATTTCTCCCTTATCACACGGT 57.111 39.130 0.00 0.00 0.00 4.83
431 432 6.989155 ATATTTCTCCCTTATCACACGGTA 57.011 37.500 0.00 0.00 0.00 4.02
432 433 5.687166 ATTTCTCCCTTATCACACGGTAA 57.313 39.130 0.00 0.00 0.00 2.85
433 434 5.687166 TTTCTCCCTTATCACACGGTAAT 57.313 39.130 0.00 0.00 0.00 1.89
434 435 4.931661 TCTCCCTTATCACACGGTAATC 57.068 45.455 0.00 0.00 0.00 1.75
435 436 4.283337 TCTCCCTTATCACACGGTAATCA 58.717 43.478 0.00 0.00 0.00 2.57
436 437 4.712829 TCTCCCTTATCACACGGTAATCAA 59.287 41.667 0.00 0.00 0.00 2.57
437 438 5.018539 TCCCTTATCACACGGTAATCAAG 57.981 43.478 0.00 0.00 0.00 3.02
438 439 4.712829 TCCCTTATCACACGGTAATCAAGA 59.287 41.667 0.00 0.00 0.00 3.02
439 440 5.365605 TCCCTTATCACACGGTAATCAAGAT 59.634 40.000 0.00 0.00 0.00 2.40
440 441 6.055588 CCCTTATCACACGGTAATCAAGATT 58.944 40.000 0.52 0.52 34.93 2.40
441 442 7.070198 TCCCTTATCACACGGTAATCAAGATTA 59.930 37.037 0.00 0.00 32.50 1.75
442 443 7.713507 CCCTTATCACACGGTAATCAAGATTAA 59.286 37.037 4.21 0.00 35.30 1.40
443 444 9.273016 CCTTATCACACGGTAATCAAGATTAAT 57.727 33.333 4.21 0.00 35.30 1.40
447 448 9.607988 ATCACACGGTAATCAAGATTAATAACA 57.392 29.630 4.21 0.00 35.30 2.41
448 449 9.607988 TCACACGGTAATCAAGATTAATAACAT 57.392 29.630 4.21 0.00 35.30 2.71
476 477 9.643693 AATTTTTACATTCACTTAGCTCATTGG 57.356 29.630 0.00 0.00 0.00 3.16
477 478 6.757897 TTTACATTCACTTAGCTCATTGGG 57.242 37.500 0.00 0.00 0.00 4.12
478 479 3.624777 ACATTCACTTAGCTCATTGGGG 58.375 45.455 0.00 0.00 0.00 4.96
479 480 2.806945 TTCACTTAGCTCATTGGGGG 57.193 50.000 0.00 0.00 0.00 5.40
480 481 1.668826 TCACTTAGCTCATTGGGGGT 58.331 50.000 0.00 0.00 0.00 4.95
481 482 1.992557 TCACTTAGCTCATTGGGGGTT 59.007 47.619 0.00 0.00 0.00 4.11
482 483 2.094675 CACTTAGCTCATTGGGGGTTG 58.905 52.381 0.00 0.00 0.00 3.77
483 484 1.005924 ACTTAGCTCATTGGGGGTTGG 59.994 52.381 0.00 0.00 0.00 3.77
484 485 0.334676 TTAGCTCATTGGGGGTTGGG 59.665 55.000 0.00 0.00 0.00 4.12
485 486 0.849094 TAGCTCATTGGGGGTTGGGT 60.849 55.000 0.00 0.00 0.00 4.51
486 487 1.229177 GCTCATTGGGGGTTGGGTT 60.229 57.895 0.00 0.00 0.00 4.11
487 488 0.040499 GCTCATTGGGGGTTGGGTTA 59.960 55.000 0.00 0.00 0.00 2.85
488 489 1.342975 GCTCATTGGGGGTTGGGTTAT 60.343 52.381 0.00 0.00 0.00 1.89
489 490 2.892301 GCTCATTGGGGGTTGGGTTATT 60.892 50.000 0.00 0.00 0.00 1.40
490 491 3.628769 GCTCATTGGGGGTTGGGTTATTA 60.629 47.826 0.00 0.00 0.00 0.98
491 492 4.615513 CTCATTGGGGGTTGGGTTATTAA 58.384 43.478 0.00 0.00 0.00 1.40
492 493 5.024803 TCATTGGGGGTTGGGTTATTAAA 57.975 39.130 0.00 0.00 0.00 1.52
493 494 5.026790 TCATTGGGGGTTGGGTTATTAAAG 58.973 41.667 0.00 0.00 0.00 1.85
494 495 4.761591 TTGGGGGTTGGGTTATTAAAGA 57.238 40.909 0.00 0.00 0.00 2.52
495 496 4.325084 TGGGGGTTGGGTTATTAAAGAG 57.675 45.455 0.00 0.00 0.00 2.85
496 497 3.011934 TGGGGGTTGGGTTATTAAAGAGG 59.988 47.826 0.00 0.00 0.00 3.69
497 498 3.270169 GGGGGTTGGGTTATTAAAGAGGA 59.730 47.826 0.00 0.00 0.00 3.71
498 499 4.533815 GGGGTTGGGTTATTAAAGAGGAG 58.466 47.826 0.00 0.00 0.00 3.69
499 500 4.228895 GGGGTTGGGTTATTAAAGAGGAGA 59.771 45.833 0.00 0.00 0.00 3.71
500 501 5.437946 GGGTTGGGTTATTAAAGAGGAGAG 58.562 45.833 0.00 0.00 0.00 3.20
501 502 5.191124 GGGTTGGGTTATTAAAGAGGAGAGA 59.809 44.000 0.00 0.00 0.00 3.10
502 503 6.350103 GGTTGGGTTATTAAAGAGGAGAGAG 58.650 44.000 0.00 0.00 0.00 3.20
503 504 6.156429 GGTTGGGTTATTAAAGAGGAGAGAGA 59.844 42.308 0.00 0.00 0.00 3.10
504 505 7.147461 GGTTGGGTTATTAAAGAGGAGAGAGAT 60.147 40.741 0.00 0.00 0.00 2.75
505 506 7.366847 TGGGTTATTAAAGAGGAGAGAGATG 57.633 40.000 0.00 0.00 0.00 2.90
506 507 6.327626 TGGGTTATTAAAGAGGAGAGAGATGG 59.672 42.308 0.00 0.00 0.00 3.51
507 508 6.327887 GGGTTATTAAAGAGGAGAGAGATGGT 59.672 42.308 0.00 0.00 0.00 3.55
508 509 7.213678 GGTTATTAAAGAGGAGAGAGATGGTG 58.786 42.308 0.00 0.00 0.00 4.17
509 510 5.885449 ATTAAAGAGGAGAGAGATGGTGG 57.115 43.478 0.00 0.00 0.00 4.61
510 511 2.173126 AAGAGGAGAGAGATGGTGGG 57.827 55.000 0.00 0.00 0.00 4.61
511 512 1.014804 AGAGGAGAGAGATGGTGGGT 58.985 55.000 0.00 0.00 0.00 4.51
512 513 1.364328 AGAGGAGAGAGATGGTGGGTT 59.636 52.381 0.00 0.00 0.00 4.11
513 514 1.484240 GAGGAGAGAGATGGTGGGTTG 59.516 57.143 0.00 0.00 0.00 3.77
514 515 0.107459 GGAGAGAGATGGTGGGTTGC 60.107 60.000 0.00 0.00 0.00 4.17
515 516 0.615331 GAGAGAGATGGTGGGTTGCA 59.385 55.000 0.00 0.00 0.00 4.08
516 517 0.326264 AGAGAGATGGTGGGTTGCAC 59.674 55.000 0.00 0.00 0.00 4.57
517 518 0.678048 GAGAGATGGTGGGTTGCACC 60.678 60.000 0.00 0.00 42.80 5.01
518 519 1.136329 AGAGATGGTGGGTTGCACCT 61.136 55.000 0.00 0.00 42.92 4.00
519 520 0.251341 GAGATGGTGGGTTGCACCTT 60.251 55.000 0.00 0.00 42.92 3.50
520 521 0.188342 AGATGGTGGGTTGCACCTTT 59.812 50.000 0.00 0.00 42.92 3.11
521 522 0.603065 GATGGTGGGTTGCACCTTTC 59.397 55.000 0.00 0.00 42.92 2.62
522 523 0.831711 ATGGTGGGTTGCACCTTTCC 60.832 55.000 0.00 6.30 42.92 3.13
523 524 1.456705 GGTGGGTTGCACCTTTCCA 60.457 57.895 0.00 0.00 38.64 3.53
524 525 1.045911 GGTGGGTTGCACCTTTCCAA 61.046 55.000 0.00 0.00 38.64 3.53
525 526 1.047801 GTGGGTTGCACCTTTCCAAT 58.952 50.000 5.48 0.00 38.64 3.16
526 527 1.047002 TGGGTTGCACCTTTCCAATG 58.953 50.000 5.48 0.00 38.64 2.82
527 528 0.320683 GGGTTGCACCTTTCCAATGC 60.321 55.000 5.48 0.00 38.64 3.56
532 533 3.488778 TGCACCTTTCCAATGCATTTT 57.511 38.095 9.83 0.00 44.17 1.82
533 534 3.818180 TGCACCTTTCCAATGCATTTTT 58.182 36.364 9.83 0.00 44.17 1.94
557 558 9.856162 TTTTTACTCCACTTTATAGTTTGTCCT 57.144 29.630 0.00 0.00 30.26 3.85
561 562 8.843885 ACTCCACTTTATAGTTTGTCCTAAAC 57.156 34.615 0.00 0.00 30.26 2.01
562 563 8.434392 ACTCCACTTTATAGTTTGTCCTAAACA 58.566 33.333 5.46 0.00 31.17 2.83
563 564 9.280174 CTCCACTTTATAGTTTGTCCTAAACAA 57.720 33.333 5.46 0.00 46.11 2.83
590 591 9.706691 ATGGTATGTATATTTTTCACTAGACGG 57.293 33.333 0.00 0.00 0.00 4.79
591 592 8.916062 TGGTATGTATATTTTTCACTAGACGGA 58.084 33.333 0.00 0.00 0.00 4.69
592 593 9.408069 GGTATGTATATTTTTCACTAGACGGAG 57.592 37.037 0.00 0.00 0.00 4.63
593 594 9.408069 GTATGTATATTTTTCACTAGACGGAGG 57.592 37.037 0.00 0.00 0.00 4.30
594 595 7.649533 TGTATATTTTTCACTAGACGGAGGA 57.350 36.000 0.00 0.00 0.00 3.71
595 596 7.713750 TGTATATTTTTCACTAGACGGAGGAG 58.286 38.462 0.00 0.00 0.00 3.69
596 597 6.793505 ATATTTTTCACTAGACGGAGGAGT 57.206 37.500 0.00 0.00 0.00 3.85
597 598 7.893124 ATATTTTTCACTAGACGGAGGAGTA 57.107 36.000 0.00 0.00 0.00 2.59
598 599 6.793505 ATTTTTCACTAGACGGAGGAGTAT 57.206 37.500 0.00 0.00 0.00 2.12
599 600 7.893124 ATTTTTCACTAGACGGAGGAGTATA 57.107 36.000 0.00 0.00 0.00 1.47
600 601 7.893124 TTTTTCACTAGACGGAGGAGTATAT 57.107 36.000 0.00 0.00 0.00 0.86
601 602 8.985315 TTTTTCACTAGACGGAGGAGTATATA 57.015 34.615 0.00 0.00 0.00 0.86
602 603 9.584008 TTTTTCACTAGACGGAGGAGTATATAT 57.416 33.333 0.00 0.00 0.00 0.86
603 604 8.789825 TTTCACTAGACGGAGGAGTATATATC 57.210 38.462 0.00 0.00 0.00 1.63
604 605 7.492077 TCACTAGACGGAGGAGTATATATCA 57.508 40.000 0.00 0.00 0.00 2.15
605 606 8.091952 TCACTAGACGGAGGAGTATATATCAT 57.908 38.462 0.00 0.00 0.00 2.45
606 607 8.549731 TCACTAGACGGAGGAGTATATATCATT 58.450 37.037 0.00 0.00 0.00 2.57
607 608 8.616942 CACTAGACGGAGGAGTATATATCATTG 58.383 40.741 0.00 0.00 0.00 2.82
608 609 7.776030 ACTAGACGGAGGAGTATATATCATTGG 59.224 40.741 0.00 0.00 0.00 3.16
609 610 6.732487 AGACGGAGGAGTATATATCATTGGA 58.268 40.000 0.00 0.00 0.00 3.53
610 611 7.358263 AGACGGAGGAGTATATATCATTGGAT 58.642 38.462 0.00 0.00 37.55 3.41
611 612 7.841729 AGACGGAGGAGTATATATCATTGGATT 59.158 37.037 0.00 0.00 34.89 3.01
612 613 8.012957 ACGGAGGAGTATATATCATTGGATTC 57.987 38.462 0.00 0.00 34.89 2.52
613 614 7.619698 ACGGAGGAGTATATATCATTGGATTCA 59.380 37.037 0.00 0.00 34.89 2.57
614 615 8.646004 CGGAGGAGTATATATCATTGGATTCAT 58.354 37.037 0.00 0.00 34.89 2.57
615 616 9.995003 GGAGGAGTATATATCATTGGATTCATC 57.005 37.037 0.00 0.00 34.89 2.92
676 677 9.755804 TTGTAAATGTTCATATTGTTTTCTGCA 57.244 25.926 0.00 0.00 0.00 4.41
677 678 9.755804 TGTAAATGTTCATATTGTTTTCTGCAA 57.244 25.926 0.00 0.00 0.00 4.08
680 681 8.891671 AATGTTCATATTGTTTTCTGCAAACT 57.108 26.923 4.66 0.00 44.68 2.66
681 682 8.891671 ATGTTCATATTGTTTTCTGCAAACTT 57.108 26.923 4.66 0.00 44.68 2.66
682 683 8.129161 TGTTCATATTGTTTTCTGCAAACTTG 57.871 30.769 4.66 0.00 44.68 3.16
683 684 7.978414 TGTTCATATTGTTTTCTGCAAACTTGA 59.022 29.630 4.66 1.10 44.68 3.02
684 685 8.981647 GTTCATATTGTTTTCTGCAAACTTGAT 58.018 29.630 4.66 0.22 44.68 2.57
685 686 8.746922 TCATATTGTTTTCTGCAAACTTGATC 57.253 30.769 4.66 0.00 44.68 2.92
686 687 8.358895 TCATATTGTTTTCTGCAAACTTGATCA 58.641 29.630 4.66 0.00 44.68 2.92
687 688 8.980610 CATATTGTTTTCTGCAAACTTGATCAA 58.019 29.630 8.12 8.12 44.68 2.57
688 689 7.846644 ATTGTTTTCTGCAAACTTGATCAAA 57.153 28.000 9.88 0.00 44.68 2.69
689 690 6.645700 TGTTTTCTGCAAACTTGATCAAAC 57.354 33.333 9.88 0.82 44.68 2.93
690 691 6.397272 TGTTTTCTGCAAACTTGATCAAACT 58.603 32.000 9.88 0.00 44.68 2.66
691 692 6.873076 TGTTTTCTGCAAACTTGATCAAACTT 59.127 30.769 9.88 2.86 44.68 2.66
692 693 7.387397 TGTTTTCTGCAAACTTGATCAAACTTT 59.613 29.630 9.88 7.20 44.68 2.66
693 694 8.868916 GTTTTCTGCAAACTTGATCAAACTTTA 58.131 29.630 9.88 0.00 41.58 1.85
694 695 9.598517 TTTTCTGCAAACTTGATCAAACTTTAT 57.401 25.926 9.88 0.00 0.00 1.40
744 745 6.753107 ATGTGGAGTAAATAAAAACGGAGG 57.247 37.500 0.00 0.00 0.00 4.30
745 746 5.005094 TGTGGAGTAAATAAAAACGGAGGG 58.995 41.667 0.00 0.00 0.00 4.30
746 747 4.397103 GTGGAGTAAATAAAAACGGAGGGG 59.603 45.833 0.00 0.00 0.00 4.79
747 748 3.949754 GGAGTAAATAAAAACGGAGGGGG 59.050 47.826 0.00 0.00 0.00 5.40
748 749 3.359033 AGTAAATAAAAACGGAGGGGGC 58.641 45.455 0.00 0.00 0.00 5.80
749 750 2.312424 AAATAAAAACGGAGGGGGCA 57.688 45.000 0.00 0.00 0.00 5.36
750 751 2.543037 AATAAAAACGGAGGGGGCAT 57.457 45.000 0.00 0.00 0.00 4.40
751 752 1.775385 ATAAAAACGGAGGGGGCATG 58.225 50.000 0.00 0.00 0.00 4.06
752 753 0.406361 TAAAAACGGAGGGGGCATGT 59.594 50.000 0.00 0.00 0.00 3.21
753 754 1.184970 AAAAACGGAGGGGGCATGTG 61.185 55.000 0.00 0.00 0.00 3.21
754 755 2.366153 AAAACGGAGGGGGCATGTGT 62.366 55.000 0.00 0.00 0.00 3.72
755 756 3.567579 AACGGAGGGGGCATGTGTG 62.568 63.158 0.00 0.00 0.00 3.82
756 757 4.033776 CGGAGGGGGCATGTGTGT 62.034 66.667 0.00 0.00 0.00 3.72
757 758 2.665089 CGGAGGGGGCATGTGTGTA 61.665 63.158 0.00 0.00 0.00 2.90
758 759 1.077716 GGAGGGGGCATGTGTGTAC 60.078 63.158 0.00 0.00 0.00 2.90
759 760 1.449601 GAGGGGGCATGTGTGTACG 60.450 63.158 0.00 0.00 0.00 3.67
760 761 2.180159 GAGGGGGCATGTGTGTACGT 62.180 60.000 0.00 0.00 0.00 3.57
761 762 1.302993 GGGGGCATGTGTGTACGTT 60.303 57.895 0.00 0.00 0.00 3.99
762 763 0.891904 GGGGGCATGTGTGTACGTTT 60.892 55.000 0.00 0.00 0.00 3.60
763 764 1.611148 GGGGGCATGTGTGTACGTTTA 60.611 52.381 0.00 0.00 0.00 2.01
764 765 2.361789 GGGGCATGTGTGTACGTTTAT 58.638 47.619 0.00 0.00 0.00 1.40
765 766 2.096819 GGGGCATGTGTGTACGTTTATG 59.903 50.000 0.00 0.00 0.00 1.90
766 767 2.745281 GGGCATGTGTGTACGTTTATGT 59.255 45.455 0.00 0.00 0.00 2.29
767 768 3.189702 GGGCATGTGTGTACGTTTATGTT 59.810 43.478 0.00 0.00 0.00 2.71
768 769 4.392445 GGGCATGTGTGTACGTTTATGTTA 59.608 41.667 0.00 0.00 0.00 2.41
769 770 5.065474 GGGCATGTGTGTACGTTTATGTTAT 59.935 40.000 0.00 0.00 0.00 1.89
770 771 6.258287 GGGCATGTGTGTACGTTTATGTTATA 59.742 38.462 0.00 0.00 0.00 0.98
771 772 7.201626 GGGCATGTGTGTACGTTTATGTTATAA 60.202 37.037 0.00 0.00 0.00 0.98
772 773 8.339714 GGCATGTGTGTACGTTTATGTTATAAT 58.660 33.333 0.00 0.00 0.00 1.28
773 774 9.365311 GCATGTGTGTACGTTTATGTTATAATC 57.635 33.333 0.00 0.00 0.00 1.75
827 828 3.048337 TCCACGGAAGCGTATTCTTTT 57.952 42.857 0.00 0.00 0.00 2.27
854 855 5.807520 TGCACAAATCAAACAATGTTTACGT 59.192 32.000 11.33 0.00 0.00 3.57
898 899 3.575399 GCAAACAGAGTTGCCCTTG 57.425 52.632 0.00 0.00 46.69 3.61
899 900 0.598419 GCAAACAGAGTTGCCCTTGC 60.598 55.000 0.00 0.00 46.69 4.01
901 902 1.455383 AAACAGAGTTGCCCTTGCCG 61.455 55.000 0.00 0.00 36.33 5.69
902 903 2.281761 CAGAGTTGCCCTTGCCGT 60.282 61.111 0.00 0.00 36.33 5.68
903 904 2.281761 AGAGTTGCCCTTGCCGTG 60.282 61.111 0.00 0.00 36.33 4.94
904 905 2.281484 GAGTTGCCCTTGCCGTGA 60.281 61.111 0.00 0.00 36.33 4.35
905 906 2.594592 AGTTGCCCTTGCCGTGAC 60.595 61.111 0.00 0.00 36.33 3.67
907 908 3.884774 TTGCCCTTGCCGTGACCT 61.885 61.111 0.00 0.00 36.33 3.85
910 911 3.953775 CCCTTGCCGTGACCTGGT 61.954 66.667 0.00 0.00 0.00 4.00
911 912 2.113139 CCTTGCCGTGACCTGGTT 59.887 61.111 0.00 0.00 0.00 3.67
912 913 1.966451 CCTTGCCGTGACCTGGTTC 60.966 63.158 0.00 0.00 0.00 3.62
913 914 2.280524 TTGCCGTGACCTGGTTCG 60.281 61.111 15.08 15.08 0.00 3.95
914 915 2.709125 CTTGCCGTGACCTGGTTCGA 62.709 60.000 20.89 5.26 0.00 3.71
915 916 2.029964 GCCGTGACCTGGTTCGAA 59.970 61.111 20.89 0.00 0.00 3.71
916 917 1.375523 GCCGTGACCTGGTTCGAAT 60.376 57.895 20.89 0.00 0.00 3.34
917 918 1.635663 GCCGTGACCTGGTTCGAATG 61.636 60.000 20.89 9.86 0.00 2.67
940 941 4.368543 AAAGCCGACCGACCGACC 62.369 66.667 0.00 0.00 0.00 4.79
1227 1237 1.022982 TGCTGCAGGCGAATCTCTTG 61.023 55.000 17.12 0.00 45.43 3.02
1478 1492 9.020731 CAAAACCTGGACCTGTTTTAAGTATAT 57.979 33.333 18.81 0.46 41.40 0.86
1506 1520 6.209986 TCGAGATTCAGGTTGAACTACCTTTA 59.790 38.462 5.31 0.00 46.39 1.85
1509 1523 8.392372 AGATTCAGGTTGAACTACCTTTAAAC 57.608 34.615 5.31 3.46 46.39 2.01
1510 1524 7.996644 AGATTCAGGTTGAACTACCTTTAAACA 59.003 33.333 5.31 0.00 46.39 2.83
1514 1528 8.973182 TCAGGTTGAACTACCTTTAAACAAAAT 58.027 29.630 5.31 0.00 46.39 1.82
1515 1529 9.030301 CAGGTTGAACTACCTTTAAACAAAATG 57.970 33.333 5.31 0.00 46.39 2.32
1526 1570 7.872483 ACCTTTAAACAAAATGCGAATTCAGAT 59.128 29.630 6.22 0.00 0.00 2.90
1594 1638 7.448915 AGCAATGCTATATGGGATAGAAGAT 57.551 36.000 5.69 0.00 36.99 2.40
1652 1696 3.435671 AGTTTAGCGTTGTTATGGTCAGC 59.564 43.478 0.00 0.00 0.00 4.26
1663 1707 4.161377 TGTTATGGTCAGCACTAGCATACA 59.839 41.667 4.87 4.81 45.49 2.29
1769 1817 5.194432 ACGTCTGGTCAGTATATCTTCTGT 58.806 41.667 0.00 0.00 33.89 3.41
1776 1824 6.607198 TGGTCAGTATATCTTCTGTCATGTGA 59.393 38.462 0.00 0.00 33.89 3.58
1777 1825 6.920758 GGTCAGTATATCTTCTGTCATGTGAC 59.079 42.308 6.21 6.21 44.97 3.67
1778 1826 7.201866 GGTCAGTATATCTTCTGTCATGTGACT 60.202 40.741 13.71 0.00 44.99 3.41
1779 1827 8.194104 GTCAGTATATCTTCTGTCATGTGACTT 58.806 37.037 13.71 0.00 44.99 3.01
1780 1828 8.193438 TCAGTATATCTTCTGTCATGTGACTTG 58.807 37.037 13.71 7.35 44.99 3.16
1781 1829 7.978414 CAGTATATCTTCTGTCATGTGACTTGT 59.022 37.037 13.71 0.00 44.99 3.16
1782 1830 7.978414 AGTATATCTTCTGTCATGTGACTTGTG 59.022 37.037 13.71 3.45 44.99 3.33
1783 1831 4.670896 TCTTCTGTCATGTGACTTGTGA 57.329 40.909 13.71 5.41 44.99 3.58
1787 1835 3.895041 TCTGTCATGTGACTTGTGAGGTA 59.105 43.478 13.71 0.00 44.99 3.08
1798 1846 6.979238 GTGACTTGTGAGGTACCAGTTATATC 59.021 42.308 15.94 1.01 35.58 1.63
1845 1893 2.679355 TGTGCTTGACAATAACGTGC 57.321 45.000 0.00 0.00 0.00 5.34
1963 2011 6.313164 CCCATCTCATATCATGTTCGAGATTG 59.687 42.308 12.64 10.55 40.57 2.67
1998 2213 7.612677 AGTACTAGTAACAATAACTTGCAGCT 58.387 34.615 3.61 0.00 35.69 4.24
1999 2214 6.727824 ACTAGTAACAATAACTTGCAGCTG 57.272 37.500 10.11 10.11 35.69 4.24
2019 2234 5.983118 AGCTGCACTTGGTTTTATTGTTTAC 59.017 36.000 1.02 0.00 0.00 2.01
2042 2257 4.638421 CGGAAGATTTGTTGCCATAAGGTA 59.362 41.667 0.00 0.00 37.19 3.08
2043 2258 5.220854 CGGAAGATTTGTTGCCATAAGGTAG 60.221 44.000 0.00 0.00 37.19 3.18
2060 2275 2.550208 GGTAGTGTTCACTCAAGGGGTG 60.550 54.545 8.80 0.00 36.17 4.61
2080 2350 1.750399 CCCAAGGGAGATGTTGCGG 60.750 63.158 0.00 0.00 37.50 5.69
2266 2538 9.692325 AAATTCTTAGATTTGATCTAACCAGCT 57.308 29.630 6.35 0.00 44.56 4.24
2512 2999 4.924305 TTTGCTTTCATATCATCAGGCC 57.076 40.909 0.00 0.00 0.00 5.19
2520 3007 0.321034 TATCATCAGGCCGCATGCTC 60.321 55.000 17.13 7.20 40.92 4.26
2565 3052 1.933181 CGTGAAGACAAGAGCACAACA 59.067 47.619 0.00 0.00 0.00 3.33
2589 3076 1.270252 TGAGTTCGCAGCTGTTGATGA 60.270 47.619 16.64 3.23 0.00 2.92
2611 3098 7.872163 TGAAGAATATTTGCAACATCACAAC 57.128 32.000 0.00 0.00 0.00 3.32
2629 3116 4.094887 CACAACTTGTAGTGTGCTTTGACT 59.905 41.667 0.00 0.00 0.00 3.41
2724 3211 7.336931 ACTTGTCAATTCTAATAAATGTCGGCT 59.663 33.333 0.00 0.00 0.00 5.52
2727 3214 7.766738 TGTCAATTCTAATAAATGTCGGCTGTA 59.233 33.333 0.00 0.00 0.00 2.74
2759 3246 3.403968 TGCCAAACAGACTATTAACGCA 58.596 40.909 0.00 0.00 0.00 5.24
2760 3247 3.815962 TGCCAAACAGACTATTAACGCAA 59.184 39.130 0.00 0.00 0.00 4.85
2762 3249 5.048364 TGCCAAACAGACTATTAACGCAAAT 60.048 36.000 0.00 0.00 0.00 2.32
2763 3250 5.511729 GCCAAACAGACTATTAACGCAAATC 59.488 40.000 0.00 0.00 0.00 2.17
2840 3330 0.827368 GGGCACAAAGGGAAACAACA 59.173 50.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038166 AGCCCTGAAGATTTCCGCAA 59.962 50.000 0.00 0.00 0.00 4.85
1 2 0.038166 AAGCCCTGAAGATTTCCGCA 59.962 50.000 0.00 0.00 0.00 5.69
2 3 1.177401 AAAGCCCTGAAGATTTCCGC 58.823 50.000 0.00 0.00 0.00 5.54
3 4 3.084786 AGAAAAGCCCTGAAGATTTCCG 58.915 45.455 0.00 0.00 31.91 4.30
4 5 5.474578 AAAGAAAAGCCCTGAAGATTTCC 57.525 39.130 0.00 0.00 31.91 3.13
5 6 6.986231 TGAAAAAGAAAAGCCCTGAAGATTTC 59.014 34.615 0.00 0.00 0.00 2.17
6 7 6.888105 TGAAAAAGAAAAGCCCTGAAGATTT 58.112 32.000 0.00 0.00 0.00 2.17
7 8 6.484364 TGAAAAAGAAAAGCCCTGAAGATT 57.516 33.333 0.00 0.00 0.00 2.40
8 9 6.571150 CGATGAAAAAGAAAAGCCCTGAAGAT 60.571 38.462 0.00 0.00 0.00 2.40
9 10 5.278463 CGATGAAAAAGAAAAGCCCTGAAGA 60.278 40.000 0.00 0.00 0.00 2.87
10 11 4.919754 CGATGAAAAAGAAAAGCCCTGAAG 59.080 41.667 0.00 0.00 0.00 3.02
11 12 4.582656 TCGATGAAAAAGAAAAGCCCTGAA 59.417 37.500 0.00 0.00 0.00 3.02
12 13 4.141287 TCGATGAAAAAGAAAAGCCCTGA 58.859 39.130 0.00 0.00 0.00 3.86
13 14 4.503741 TCGATGAAAAAGAAAAGCCCTG 57.496 40.909 0.00 0.00 0.00 4.45
14 15 5.478332 AGATTCGATGAAAAAGAAAAGCCCT 59.522 36.000 0.00 0.00 0.00 5.19
15 16 5.714047 AGATTCGATGAAAAAGAAAAGCCC 58.286 37.500 0.00 0.00 0.00 5.19
16 17 7.270685 GAAGATTCGATGAAAAAGAAAAGCC 57.729 36.000 0.00 0.00 0.00 4.35
33 34 3.813724 GCCTACCAATAACCCGAAGATTC 59.186 47.826 0.00 0.00 0.00 2.52
34 35 3.743269 CGCCTACCAATAACCCGAAGATT 60.743 47.826 0.00 0.00 0.00 2.40
35 36 2.224209 CGCCTACCAATAACCCGAAGAT 60.224 50.000 0.00 0.00 0.00 2.40
36 37 1.137479 CGCCTACCAATAACCCGAAGA 59.863 52.381 0.00 0.00 0.00 2.87
37 38 1.137479 TCGCCTACCAATAACCCGAAG 59.863 52.381 0.00 0.00 0.00 3.79
38 39 1.137479 CTCGCCTACCAATAACCCGAA 59.863 52.381 0.00 0.00 0.00 4.30
39 40 0.748450 CTCGCCTACCAATAACCCGA 59.252 55.000 0.00 0.00 0.00 5.14
40 41 0.462789 ACTCGCCTACCAATAACCCG 59.537 55.000 0.00 0.00 0.00 5.28
41 42 1.949465 CACTCGCCTACCAATAACCC 58.051 55.000 0.00 0.00 0.00 4.11
42 43 1.134491 AGCACTCGCCTACCAATAACC 60.134 52.381 0.00 0.00 39.83 2.85
43 44 2.311124 AGCACTCGCCTACCAATAAC 57.689 50.000 0.00 0.00 39.83 1.89
44 45 2.027561 ACAAGCACTCGCCTACCAATAA 60.028 45.455 0.00 0.00 39.83 1.40
45 46 1.553248 ACAAGCACTCGCCTACCAATA 59.447 47.619 0.00 0.00 39.83 1.90
46 47 0.324943 ACAAGCACTCGCCTACCAAT 59.675 50.000 0.00 0.00 39.83 3.16
47 48 0.602638 CACAAGCACTCGCCTACCAA 60.603 55.000 0.00 0.00 39.83 3.67
48 49 1.005037 CACAAGCACTCGCCTACCA 60.005 57.895 0.00 0.00 39.83 3.25
49 50 0.737715 CTCACAAGCACTCGCCTACC 60.738 60.000 0.00 0.00 39.83 3.18
50 51 0.038159 ACTCACAAGCACTCGCCTAC 60.038 55.000 0.00 0.00 39.83 3.18
51 52 1.541379 TACTCACAAGCACTCGCCTA 58.459 50.000 0.00 0.00 39.83 3.93
52 53 0.898320 ATACTCACAAGCACTCGCCT 59.102 50.000 0.00 0.00 39.83 5.52
53 54 1.002366 CATACTCACAAGCACTCGCC 58.998 55.000 0.00 0.00 39.83 5.54
54 55 1.391485 CACATACTCACAAGCACTCGC 59.609 52.381 0.00 0.00 38.99 5.03
55 56 2.409715 CACACATACTCACAAGCACTCG 59.590 50.000 0.00 0.00 0.00 4.18
56 57 2.158449 GCACACATACTCACAAGCACTC 59.842 50.000 0.00 0.00 0.00 3.51
57 58 2.146342 GCACACATACTCACAAGCACT 58.854 47.619 0.00 0.00 0.00 4.40
58 59 1.872952 TGCACACATACTCACAAGCAC 59.127 47.619 0.00 0.00 0.00 4.40
59 60 2.145536 CTGCACACATACTCACAAGCA 58.854 47.619 0.00 0.00 0.00 3.91
60 61 1.135859 GCTGCACACATACTCACAAGC 60.136 52.381 0.00 0.00 0.00 4.01
61 62 2.145536 TGCTGCACACATACTCACAAG 58.854 47.619 0.00 0.00 0.00 3.16
62 63 2.252976 TGCTGCACACATACTCACAA 57.747 45.000 0.00 0.00 0.00 3.33
63 64 2.477845 ATGCTGCACACATACTCACA 57.522 45.000 3.57 0.00 0.00 3.58
64 65 3.933155 GTATGCTGCACACATACTCAC 57.067 47.619 20.49 4.59 44.19 3.51
68 69 2.158900 AGGGAGTATGCTGCACACATAC 60.159 50.000 20.31 20.31 46.68 2.39
69 70 2.103094 GAGGGAGTATGCTGCACACATA 59.897 50.000 14.14 0.00 34.49 2.29
70 71 0.914644 AGGGAGTATGCTGCACACAT 59.085 50.000 14.14 0.00 34.49 3.21
71 72 0.250234 GAGGGAGTATGCTGCACACA 59.750 55.000 14.14 0.00 34.49 3.72
72 73 0.462759 GGAGGGAGTATGCTGCACAC 60.463 60.000 3.57 2.79 34.49 3.82
73 74 0.909133 TGGAGGGAGTATGCTGCACA 60.909 55.000 3.57 0.00 34.49 4.57
74 75 0.471617 ATGGAGGGAGTATGCTGCAC 59.528 55.000 3.57 0.00 34.49 4.57
75 76 1.216064 AATGGAGGGAGTATGCTGCA 58.784 50.000 4.13 4.13 34.49 4.41
76 77 2.355010 AAATGGAGGGAGTATGCTGC 57.645 50.000 0.00 0.00 0.00 5.25
77 78 6.966534 AATAAAAATGGAGGGAGTATGCTG 57.033 37.500 0.00 0.00 0.00 4.41
78 79 8.282256 AGTAAATAAAAATGGAGGGAGTATGCT 58.718 33.333 0.00 0.00 0.00 3.79
79 80 8.465273 AGTAAATAAAAATGGAGGGAGTATGC 57.535 34.615 0.00 0.00 0.00 3.14
80 81 9.067986 GGAGTAAATAAAAATGGAGGGAGTATG 57.932 37.037 0.00 0.00 0.00 2.39
81 82 7.937394 CGGAGTAAATAAAAATGGAGGGAGTAT 59.063 37.037 0.00 0.00 0.00 2.12
82 83 7.277396 CGGAGTAAATAAAAATGGAGGGAGTA 58.723 38.462 0.00 0.00 0.00 2.59
83 84 6.120220 CGGAGTAAATAAAAATGGAGGGAGT 58.880 40.000 0.00 0.00 0.00 3.85
84 85 5.008712 GCGGAGTAAATAAAAATGGAGGGAG 59.991 44.000 0.00 0.00 0.00 4.30
85 86 4.885325 GCGGAGTAAATAAAAATGGAGGGA 59.115 41.667 0.00 0.00 0.00 4.20
86 87 4.642885 TGCGGAGTAAATAAAAATGGAGGG 59.357 41.667 0.00 0.00 0.00 4.30
87 88 5.828299 TGCGGAGTAAATAAAAATGGAGG 57.172 39.130 0.00 0.00 0.00 4.30
151 152 8.419442 CGGAGGGAGTATATTTTACTACAAACT 58.581 37.037 0.00 0.00 30.01 2.66
152 153 8.200120 ACGGAGGGAGTATATTTTACTACAAAC 58.800 37.037 0.00 0.00 30.01 2.93
153 154 8.310122 ACGGAGGGAGTATATTTTACTACAAA 57.690 34.615 0.00 0.00 30.01 2.83
154 155 7.014615 GGACGGAGGGAGTATATTTTACTACAA 59.985 40.741 0.00 0.00 30.01 2.41
155 156 6.491403 GGACGGAGGGAGTATATTTTACTACA 59.509 42.308 0.00 0.00 30.01 2.74
156 157 6.071672 GGGACGGAGGGAGTATATTTTACTAC 60.072 46.154 0.00 0.00 0.00 2.73
157 158 6.012745 GGGACGGAGGGAGTATATTTTACTA 58.987 44.000 0.00 0.00 0.00 1.82
158 159 4.837298 GGGACGGAGGGAGTATATTTTACT 59.163 45.833 0.00 0.00 0.00 2.24
159 160 5.144692 GGGACGGAGGGAGTATATTTTAC 57.855 47.826 0.00 0.00 0.00 2.01
181 182 4.868171 TCCATTTCTCCGACAAGTATTTCG 59.132 41.667 0.00 0.00 34.93 3.46
182 183 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
183 184 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
184 185 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
185 186 8.980481 ATTTTATCCATTTCTCCGACAAGTAT 57.020 30.769 0.00 0.00 0.00 2.12
186 187 8.673711 CAATTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
187 188 7.362920 CCAATTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
188 189 6.974622 CCAATTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
189 190 6.661377 TCCAATTTTATCCATTTCTCCGACAA 59.339 34.615 0.00 0.00 0.00 3.18
190 191 6.184068 TCCAATTTTATCCATTTCTCCGACA 58.816 36.000 0.00 0.00 0.00 4.35
191 192 6.693315 TCCAATTTTATCCATTTCTCCGAC 57.307 37.500 0.00 0.00 0.00 4.79
192 193 6.833416 ACATCCAATTTTATCCATTTCTCCGA 59.167 34.615 0.00 0.00 0.00 4.55
193 194 7.042797 ACATCCAATTTTATCCATTTCTCCG 57.957 36.000 0.00 0.00 0.00 4.63
230 231 9.956640 GGAGAAATGGATGAATCTAGATGTATT 57.043 33.333 5.86 0.00 0.00 1.89
231 232 8.256605 CGGAGAAATGGATGAATCTAGATGTAT 58.743 37.037 5.86 3.87 0.00 2.29
232 233 7.451566 TCGGAGAAATGGATGAATCTAGATGTA 59.548 37.037 5.86 0.00 0.00 2.29
233 234 6.268617 TCGGAGAAATGGATGAATCTAGATGT 59.731 38.462 5.86 0.00 0.00 3.06
234 235 6.589523 GTCGGAGAAATGGATGAATCTAGATG 59.410 42.308 5.86 0.00 39.69 2.90
235 236 6.268617 TGTCGGAGAAATGGATGAATCTAGAT 59.731 38.462 0.00 0.00 39.69 1.98
236 237 5.598417 TGTCGGAGAAATGGATGAATCTAGA 59.402 40.000 0.00 0.00 39.69 2.43
237 238 5.847304 TGTCGGAGAAATGGATGAATCTAG 58.153 41.667 0.00 0.00 39.69 2.43
238 239 5.869649 TGTCGGAGAAATGGATGAATCTA 57.130 39.130 0.00 0.00 39.69 1.98
239 240 4.760530 TGTCGGAGAAATGGATGAATCT 57.239 40.909 0.00 0.00 39.69 2.40
240 241 4.878397 ACTTGTCGGAGAAATGGATGAATC 59.122 41.667 0.00 0.00 39.69 2.52
241 242 4.848357 ACTTGTCGGAGAAATGGATGAAT 58.152 39.130 0.00 0.00 39.69 2.57
242 243 4.286297 ACTTGTCGGAGAAATGGATGAA 57.714 40.909 0.00 0.00 39.69 2.57
243 244 3.981071 ACTTGTCGGAGAAATGGATGA 57.019 42.857 0.00 0.00 39.69 2.92
244 245 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
245 246 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
246 247 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
247 248 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
248 249 4.630069 ACGGAAATACTTGTCGGAGAAATG 59.370 41.667 0.00 0.00 39.69 2.32
249 250 4.828829 ACGGAAATACTTGTCGGAGAAAT 58.171 39.130 0.00 0.00 39.69 2.17
250 251 4.261578 ACGGAAATACTTGTCGGAGAAA 57.738 40.909 0.00 0.00 39.69 2.52
251 252 3.947910 ACGGAAATACTTGTCGGAGAA 57.052 42.857 0.00 0.00 39.69 2.87
252 253 3.181507 CGTACGGAAATACTTGTCGGAGA 60.182 47.826 7.57 0.00 0.00 3.71
253 254 3.103738 CGTACGGAAATACTTGTCGGAG 58.896 50.000 7.57 0.00 0.00 4.63
254 255 2.159393 CCGTACGGAAATACTTGTCGGA 60.159 50.000 30.64 0.00 38.03 4.55
255 256 2.159393 TCCGTACGGAAATACTTGTCGG 60.159 50.000 33.96 3.19 42.05 4.79
256 257 3.103738 CTCCGTACGGAAATACTTGTCG 58.896 50.000 34.77 17.08 44.66 4.35
257 258 3.442100 CCTCCGTACGGAAATACTTGTC 58.558 50.000 34.77 0.00 44.66 3.18
258 259 2.167075 CCCTCCGTACGGAAATACTTGT 59.833 50.000 34.77 0.00 44.66 3.16
259 260 2.428171 TCCCTCCGTACGGAAATACTTG 59.572 50.000 34.77 21.77 44.66 3.16
260 261 2.692041 CTCCCTCCGTACGGAAATACTT 59.308 50.000 34.77 0.00 44.66 2.24
261 262 2.305009 CTCCCTCCGTACGGAAATACT 58.695 52.381 34.77 0.00 44.66 2.12
262 263 2.027385 ACTCCCTCCGTACGGAAATAC 58.973 52.381 34.77 0.00 44.66 1.89
263 264 2.442236 ACTCCCTCCGTACGGAAATA 57.558 50.000 34.77 21.70 44.66 1.40
264 265 2.442236 TACTCCCTCCGTACGGAAAT 57.558 50.000 34.77 20.78 44.66 2.17
265 266 2.442236 ATACTCCCTCCGTACGGAAA 57.558 50.000 34.77 22.33 44.66 3.13
266 267 2.442236 AATACTCCCTCCGTACGGAA 57.558 50.000 34.77 21.13 44.66 4.30
267 268 3.214328 GTTAATACTCCCTCCGTACGGA 58.786 50.000 33.55 33.55 42.90 4.69
268 269 2.951642 TGTTAATACTCCCTCCGTACGG 59.048 50.000 28.66 28.66 0.00 4.02
269 270 4.843220 ATGTTAATACTCCCTCCGTACG 57.157 45.455 8.69 8.69 0.00 3.67
270 271 8.239998 GTGTATATGTTAATACTCCCTCCGTAC 58.760 40.741 0.00 0.00 34.13 3.67
271 272 8.166061 AGTGTATATGTTAATACTCCCTCCGTA 58.834 37.037 0.00 0.00 34.13 4.02
272 273 7.008941 AGTGTATATGTTAATACTCCCTCCGT 58.991 38.462 0.00 0.00 34.13 4.69
273 274 7.463961 AGTGTATATGTTAATACTCCCTCCG 57.536 40.000 0.00 0.00 34.13 4.63
274 275 9.531158 AGTAGTGTATATGTTAATACTCCCTCC 57.469 37.037 0.00 0.00 34.13 4.30
286 287 8.654094 GGGGTATTTGGTAGTAGTGTATATGTT 58.346 37.037 0.00 0.00 0.00 2.71
287 288 8.014859 AGGGGTATTTGGTAGTAGTGTATATGT 58.985 37.037 0.00 0.00 0.00 2.29
288 289 8.431910 AGGGGTATTTGGTAGTAGTGTATATG 57.568 38.462 0.00 0.00 0.00 1.78
289 290 7.677319 GGAGGGGTATTTGGTAGTAGTGTATAT 59.323 40.741 0.00 0.00 0.00 0.86
290 291 7.012607 GGAGGGGTATTTGGTAGTAGTGTATA 58.987 42.308 0.00 0.00 0.00 1.47
291 292 5.842874 GGAGGGGTATTTGGTAGTAGTGTAT 59.157 44.000 0.00 0.00 0.00 2.29
292 293 5.211201 GGAGGGGTATTTGGTAGTAGTGTA 58.789 45.833 0.00 0.00 0.00 2.90
293 294 4.035814 GGAGGGGTATTTGGTAGTAGTGT 58.964 47.826 0.00 0.00 0.00 3.55
294 295 3.390311 GGGAGGGGTATTTGGTAGTAGTG 59.610 52.174 0.00 0.00 0.00 2.74
295 296 3.634477 GGGGAGGGGTATTTGGTAGTAGT 60.634 52.174 0.00 0.00 0.00 2.73
296 297 2.977580 GGGGAGGGGTATTTGGTAGTAG 59.022 54.545 0.00 0.00 0.00 2.57
297 298 2.361722 GGGGGAGGGGTATTTGGTAGTA 60.362 54.545 0.00 0.00 0.00 1.82
298 299 1.630035 GGGGGAGGGGTATTTGGTAGT 60.630 57.143 0.00 0.00 0.00 2.73
299 300 1.146452 GGGGGAGGGGTATTTGGTAG 58.854 60.000 0.00 0.00 0.00 3.18
300 301 3.363266 GGGGGAGGGGTATTTGGTA 57.637 57.895 0.00 0.00 0.00 3.25
301 302 4.199287 GGGGGAGGGGTATTTGGT 57.801 61.111 0.00 0.00 0.00 3.67
315 316 2.058595 ACTCTTCATCGGACGGGGG 61.059 63.158 0.00 0.00 0.00 5.40
316 317 1.141881 CACTCTTCATCGGACGGGG 59.858 63.158 0.00 0.00 0.00 5.73
317 318 1.100510 TACACTCTTCATCGGACGGG 58.899 55.000 0.00 0.00 0.00 5.28
318 319 1.471287 TGTACACTCTTCATCGGACGG 59.529 52.381 0.00 0.00 0.00 4.79
319 320 2.516923 GTGTACACTCTTCATCGGACG 58.483 52.381 18.92 0.00 0.00 4.79
320 321 2.416972 GGGTGTACACTCTTCATCGGAC 60.417 54.545 24.55 4.14 0.00 4.79
321 322 1.822990 GGGTGTACACTCTTCATCGGA 59.177 52.381 24.55 0.00 0.00 4.55
322 323 1.469251 CGGGTGTACACTCTTCATCGG 60.469 57.143 23.11 6.80 0.00 4.18
323 324 1.469251 CCGGGTGTACACTCTTCATCG 60.469 57.143 23.11 14.86 0.00 3.84
324 325 1.549170 ACCGGGTGTACACTCTTCATC 59.451 52.381 23.11 6.01 0.00 2.92
325 326 1.640917 ACCGGGTGTACACTCTTCAT 58.359 50.000 23.11 3.46 0.00 2.57
326 327 1.416243 AACCGGGTGTACACTCTTCA 58.584 50.000 23.11 0.00 0.00 3.02
327 328 2.538512 AAACCGGGTGTACACTCTTC 57.461 50.000 23.11 7.80 0.00 2.87
328 329 4.420522 TTTAAACCGGGTGTACACTCTT 57.579 40.909 23.11 13.34 0.00 2.85
329 330 4.420522 TTTTAAACCGGGTGTACACTCT 57.579 40.909 23.11 7.42 0.00 3.24
330 331 5.694231 ATTTTTAAACCGGGTGTACACTC 57.306 39.130 24.55 20.71 0.00 3.51
331 332 6.321945 AGAAATTTTTAAACCGGGTGTACACT 59.678 34.615 24.55 7.16 0.00 3.55
332 333 6.506147 AGAAATTTTTAAACCGGGTGTACAC 58.494 36.000 18.01 18.01 0.00 2.90
333 334 6.712179 AGAAATTTTTAAACCGGGTGTACA 57.288 33.333 6.32 0.00 0.00 2.90
334 335 7.167968 GTGAAGAAATTTTTAAACCGGGTGTAC 59.832 37.037 6.32 0.00 0.00 2.90
335 336 7.147949 TGTGAAGAAATTTTTAAACCGGGTGTA 60.148 33.333 6.32 0.00 0.00 2.90
336 337 6.044046 GTGAAGAAATTTTTAAACCGGGTGT 58.956 36.000 6.32 0.00 0.00 4.16
337 338 6.043411 TGTGAAGAAATTTTTAAACCGGGTG 58.957 36.000 6.32 0.00 0.00 4.61
338 339 6.223351 TGTGAAGAAATTTTTAAACCGGGT 57.777 33.333 6.32 0.00 0.00 5.28
339 340 7.541122 TTTGTGAAGAAATTTTTAAACCGGG 57.459 32.000 6.32 0.00 0.00 5.73
340 341 8.874816 TCTTTTGTGAAGAAATTTTTAAACCGG 58.125 29.630 0.00 0.00 0.00 5.28
341 342 9.900264 CTCTTTTGTGAAGAAATTTTTAAACCG 57.100 29.630 0.00 0.00 0.00 4.44
349 350 9.788960 GAAGTACACTCTTTTGTGAAGAAATTT 57.211 29.630 0.00 0.00 40.12 1.82
350 351 9.178758 AGAAGTACACTCTTTTGTGAAGAAATT 57.821 29.630 0.00 0.00 40.12 1.82
351 352 8.738645 AGAAGTACACTCTTTTGTGAAGAAAT 57.261 30.769 0.00 0.00 40.12 2.17
352 353 9.832445 ATAGAAGTACACTCTTTTGTGAAGAAA 57.168 29.630 3.13 0.00 40.12 2.52
353 354 9.477484 GATAGAAGTACACTCTTTTGTGAAGAA 57.523 33.333 3.13 0.00 40.12 2.52
354 355 8.861086 AGATAGAAGTACACTCTTTTGTGAAGA 58.139 33.333 3.13 0.00 40.12 2.87
355 356 9.482627 AAGATAGAAGTACACTCTTTTGTGAAG 57.517 33.333 3.13 0.00 40.12 3.02
356 357 9.477484 GAAGATAGAAGTACACTCTTTTGTGAA 57.523 33.333 3.13 0.00 40.12 3.18
357 358 8.088981 GGAAGATAGAAGTACACTCTTTTGTGA 58.911 37.037 3.13 0.00 40.12 3.58
358 359 7.332182 GGGAAGATAGAAGTACACTCTTTTGTG 59.668 40.741 3.13 0.00 43.07 3.33
359 360 7.016268 TGGGAAGATAGAAGTACACTCTTTTGT 59.984 37.037 3.13 0.00 0.00 2.83
360 361 7.386851 TGGGAAGATAGAAGTACACTCTTTTG 58.613 38.462 3.13 0.00 0.00 2.44
361 362 7.554959 TGGGAAGATAGAAGTACACTCTTTT 57.445 36.000 3.13 0.00 0.00 2.27
362 363 7.554959 TTGGGAAGATAGAAGTACACTCTTT 57.445 36.000 3.13 0.00 0.00 2.52
363 364 7.560368 CATTGGGAAGATAGAAGTACACTCTT 58.440 38.462 3.13 0.20 0.00 2.85
364 365 6.407525 GCATTGGGAAGATAGAAGTACACTCT 60.408 42.308 0.00 0.00 0.00 3.24
365 366 5.755861 GCATTGGGAAGATAGAAGTACACTC 59.244 44.000 0.00 0.00 0.00 3.51
366 367 5.189736 TGCATTGGGAAGATAGAAGTACACT 59.810 40.000 0.00 0.00 0.00 3.55
367 368 5.428253 TGCATTGGGAAGATAGAAGTACAC 58.572 41.667 0.00 0.00 0.00 2.90
368 369 5.692115 TGCATTGGGAAGATAGAAGTACA 57.308 39.130 0.00 0.00 0.00 2.90
369 370 7.573968 AAATGCATTGGGAAGATAGAAGTAC 57.426 36.000 13.82 0.00 0.00 2.73
370 371 9.693739 TTAAAATGCATTGGGAAGATAGAAGTA 57.306 29.630 13.82 0.00 0.00 2.24
371 372 8.593945 TTAAAATGCATTGGGAAGATAGAAGT 57.406 30.769 13.82 0.00 0.00 3.01
372 373 9.525409 CTTTAAAATGCATTGGGAAGATAGAAG 57.475 33.333 13.82 2.86 0.00 2.85
373 374 9.034800 ACTTTAAAATGCATTGGGAAGATAGAA 57.965 29.630 24.20 6.95 0.00 2.10
374 375 8.593945 ACTTTAAAATGCATTGGGAAGATAGA 57.406 30.769 24.20 3.93 0.00 1.98
375 376 9.956720 CTACTTTAAAATGCATTGGGAAGATAG 57.043 33.333 24.20 18.84 0.00 2.08
376 377 9.693739 TCTACTTTAAAATGCATTGGGAAGATA 57.306 29.630 24.20 15.74 0.00 1.98
377 378 8.593945 TCTACTTTAAAATGCATTGGGAAGAT 57.406 30.769 24.20 15.56 0.00 2.40
378 379 8.415950 TTCTACTTTAAAATGCATTGGGAAGA 57.584 30.769 24.20 14.54 0.00 2.87
379 380 9.487790 TTTTCTACTTTAAAATGCATTGGGAAG 57.512 29.630 13.82 17.45 0.00 3.46
380 381 9.838339 TTTTTCTACTTTAAAATGCATTGGGAA 57.162 25.926 13.82 4.80 0.00 3.97
404 405 7.614192 ACCGTGTGATAAGGGAGAAATATTTTT 59.386 33.333 1.43 0.00 31.45 1.94
405 406 7.116736 ACCGTGTGATAAGGGAGAAATATTTT 58.883 34.615 1.43 0.00 31.45 1.82
406 407 6.659824 ACCGTGTGATAAGGGAGAAATATTT 58.340 36.000 0.00 0.00 31.45 1.40
407 408 6.248569 ACCGTGTGATAAGGGAGAAATATT 57.751 37.500 0.00 0.00 31.45 1.28
408 409 5.888982 ACCGTGTGATAAGGGAGAAATAT 57.111 39.130 0.00 0.00 31.45 1.28
409 410 6.795144 TTACCGTGTGATAAGGGAGAAATA 57.205 37.500 0.00 0.00 31.45 1.40
410 411 5.687166 TTACCGTGTGATAAGGGAGAAAT 57.313 39.130 0.00 0.00 31.45 2.17
411 412 5.188163 TGATTACCGTGTGATAAGGGAGAAA 59.812 40.000 0.00 0.00 31.45 2.52
412 413 4.712829 TGATTACCGTGTGATAAGGGAGAA 59.287 41.667 0.00 0.00 31.45 2.87
413 414 4.283337 TGATTACCGTGTGATAAGGGAGA 58.717 43.478 0.00 0.00 31.45 3.71
414 415 4.665833 TGATTACCGTGTGATAAGGGAG 57.334 45.455 0.00 0.00 31.45 4.30
415 416 4.712829 TCTTGATTACCGTGTGATAAGGGA 59.287 41.667 0.00 0.00 31.45 4.20
416 417 5.018539 TCTTGATTACCGTGTGATAAGGG 57.981 43.478 0.00 0.00 31.45 3.95
417 418 8.657074 TTAATCTTGATTACCGTGTGATAAGG 57.343 34.615 2.87 0.00 0.00 2.69
421 422 9.607988 TGTTATTAATCTTGATTACCGTGTGAT 57.392 29.630 2.87 0.00 0.00 3.06
422 423 9.607988 ATGTTATTAATCTTGATTACCGTGTGA 57.392 29.630 2.87 0.00 0.00 3.58
450 451 9.643693 CCAATGAGCTAAGTGAATGTAAAAATT 57.356 29.630 0.00 0.00 0.00 1.82
451 452 8.253113 CCCAATGAGCTAAGTGAATGTAAAAAT 58.747 33.333 0.00 0.00 0.00 1.82
452 453 7.309744 CCCCAATGAGCTAAGTGAATGTAAAAA 60.310 37.037 0.00 0.00 0.00 1.94
453 454 6.152661 CCCCAATGAGCTAAGTGAATGTAAAA 59.847 38.462 0.00 0.00 0.00 1.52
454 455 5.652014 CCCCAATGAGCTAAGTGAATGTAAA 59.348 40.000 0.00 0.00 0.00 2.01
455 456 5.192927 CCCCAATGAGCTAAGTGAATGTAA 58.807 41.667 0.00 0.00 0.00 2.41
456 457 4.385199 CCCCCAATGAGCTAAGTGAATGTA 60.385 45.833 0.00 0.00 0.00 2.29
457 458 3.624777 CCCCAATGAGCTAAGTGAATGT 58.375 45.455 0.00 0.00 0.00 2.71
458 459 2.954318 CCCCCAATGAGCTAAGTGAATG 59.046 50.000 0.00 0.00 0.00 2.67
459 460 2.582636 ACCCCCAATGAGCTAAGTGAAT 59.417 45.455 0.00 0.00 0.00 2.57
460 461 1.992557 ACCCCCAATGAGCTAAGTGAA 59.007 47.619 0.00 0.00 0.00 3.18
461 462 1.668826 ACCCCCAATGAGCTAAGTGA 58.331 50.000 0.00 0.00 0.00 3.41
462 463 2.094675 CAACCCCCAATGAGCTAAGTG 58.905 52.381 0.00 0.00 0.00 3.16
463 464 1.005924 CCAACCCCCAATGAGCTAAGT 59.994 52.381 0.00 0.00 0.00 2.24
464 465 1.686115 CCCAACCCCCAATGAGCTAAG 60.686 57.143 0.00 0.00 0.00 2.18
465 466 0.334676 CCCAACCCCCAATGAGCTAA 59.665 55.000 0.00 0.00 0.00 3.09
466 467 0.849094 ACCCAACCCCCAATGAGCTA 60.849 55.000 0.00 0.00 0.00 3.32
467 468 1.739608 AACCCAACCCCCAATGAGCT 61.740 55.000 0.00 0.00 0.00 4.09
468 469 0.040499 TAACCCAACCCCCAATGAGC 59.960 55.000 0.00 0.00 0.00 4.26
469 470 2.846665 ATAACCCAACCCCCAATGAG 57.153 50.000 0.00 0.00 0.00 2.90
470 471 4.694280 TTAATAACCCAACCCCCAATGA 57.306 40.909 0.00 0.00 0.00 2.57
471 472 5.026790 TCTTTAATAACCCAACCCCCAATG 58.973 41.667 0.00 0.00 0.00 2.82
472 473 5.277250 CTCTTTAATAACCCAACCCCCAAT 58.723 41.667 0.00 0.00 0.00 3.16
473 474 4.511294 CCTCTTTAATAACCCAACCCCCAA 60.511 45.833 0.00 0.00 0.00 4.12
474 475 3.011934 CCTCTTTAATAACCCAACCCCCA 59.988 47.826 0.00 0.00 0.00 4.96
475 476 3.270169 TCCTCTTTAATAACCCAACCCCC 59.730 47.826 0.00 0.00 0.00 5.40
476 477 4.228895 TCTCCTCTTTAATAACCCAACCCC 59.771 45.833 0.00 0.00 0.00 4.95
477 478 5.191124 TCTCTCCTCTTTAATAACCCAACCC 59.809 44.000 0.00 0.00 0.00 4.11
478 479 6.156429 TCTCTCTCCTCTTTAATAACCCAACC 59.844 42.308 0.00 0.00 0.00 3.77
479 480 7.184067 TCTCTCTCCTCTTTAATAACCCAAC 57.816 40.000 0.00 0.00 0.00 3.77
480 481 7.147479 CCATCTCTCTCCTCTTTAATAACCCAA 60.147 40.741 0.00 0.00 0.00 4.12
481 482 6.327626 CCATCTCTCTCCTCTTTAATAACCCA 59.672 42.308 0.00 0.00 0.00 4.51
482 483 6.327887 ACCATCTCTCTCCTCTTTAATAACCC 59.672 42.308 0.00 0.00 0.00 4.11
483 484 7.213678 CACCATCTCTCTCCTCTTTAATAACC 58.786 42.308 0.00 0.00 0.00 2.85
484 485 7.213678 CCACCATCTCTCTCCTCTTTAATAAC 58.786 42.308 0.00 0.00 0.00 1.89
485 486 6.327626 CCCACCATCTCTCTCCTCTTTAATAA 59.672 42.308 0.00 0.00 0.00 1.40
486 487 5.841237 CCCACCATCTCTCTCCTCTTTAATA 59.159 44.000 0.00 0.00 0.00 0.98
487 488 4.657969 CCCACCATCTCTCTCCTCTTTAAT 59.342 45.833 0.00 0.00 0.00 1.40
488 489 4.033709 CCCACCATCTCTCTCCTCTTTAA 58.966 47.826 0.00 0.00 0.00 1.52
489 490 3.012959 ACCCACCATCTCTCTCCTCTTTA 59.987 47.826 0.00 0.00 0.00 1.85
490 491 2.225753 ACCCACCATCTCTCTCCTCTTT 60.226 50.000 0.00 0.00 0.00 2.52
491 492 1.364328 ACCCACCATCTCTCTCCTCTT 59.636 52.381 0.00 0.00 0.00 2.85
492 493 1.014804 ACCCACCATCTCTCTCCTCT 58.985 55.000 0.00 0.00 0.00 3.69
493 494 1.484240 CAACCCACCATCTCTCTCCTC 59.516 57.143 0.00 0.00 0.00 3.71
494 495 1.577736 CAACCCACCATCTCTCTCCT 58.422 55.000 0.00 0.00 0.00 3.69
495 496 0.107459 GCAACCCACCATCTCTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
496 497 0.615331 TGCAACCCACCATCTCTCTC 59.385 55.000 0.00 0.00 0.00 3.20
497 498 0.326264 GTGCAACCCACCATCTCTCT 59.674 55.000 0.00 0.00 38.55 3.10
498 499 2.859992 GTGCAACCCACCATCTCTC 58.140 57.895 0.00 0.00 38.55 3.20
510 511 3.984838 TGCATTGGAAAGGTGCAAC 57.015 47.368 0.00 0.00 44.99 4.17
531 532 9.856162 AGGACAAACTATAAAGTGGAGTAAAAA 57.144 29.630 0.00 0.00 35.62 1.94
535 536 9.933723 GTTTAGGACAAACTATAAAGTGGAGTA 57.066 33.333 0.00 0.00 35.62 2.59
536 537 8.434392 TGTTTAGGACAAACTATAAAGTGGAGT 58.566 33.333 2.00 0.00 34.69 3.85
537 538 8.842358 TGTTTAGGACAAACTATAAAGTGGAG 57.158 34.615 2.00 0.00 34.69 3.86
564 565 9.706691 CCGTCTAGTGAAAAATATACATACCAT 57.293 33.333 0.00 0.00 0.00 3.55
565 566 8.916062 TCCGTCTAGTGAAAAATATACATACCA 58.084 33.333 0.00 0.00 0.00 3.25
566 567 9.408069 CTCCGTCTAGTGAAAAATATACATACC 57.592 37.037 0.00 0.00 0.00 2.73
567 568 9.408069 CCTCCGTCTAGTGAAAAATATACATAC 57.592 37.037 0.00 0.00 0.00 2.39
568 569 9.358406 TCCTCCGTCTAGTGAAAAATATACATA 57.642 33.333 0.00 0.00 0.00 2.29
569 570 8.246430 TCCTCCGTCTAGTGAAAAATATACAT 57.754 34.615 0.00 0.00 0.00 2.29
570 571 7.341256 ACTCCTCCGTCTAGTGAAAAATATACA 59.659 37.037 0.00 0.00 0.00 2.29
571 572 7.714703 ACTCCTCCGTCTAGTGAAAAATATAC 58.285 38.462 0.00 0.00 0.00 1.47
572 573 7.893124 ACTCCTCCGTCTAGTGAAAAATATA 57.107 36.000 0.00 0.00 0.00 0.86
573 574 6.793505 ACTCCTCCGTCTAGTGAAAAATAT 57.206 37.500 0.00 0.00 0.00 1.28
574 575 7.893124 ATACTCCTCCGTCTAGTGAAAAATA 57.107 36.000 0.00 0.00 0.00 1.40
575 576 6.793505 ATACTCCTCCGTCTAGTGAAAAAT 57.206 37.500 0.00 0.00 0.00 1.82
576 577 7.893124 ATATACTCCTCCGTCTAGTGAAAAA 57.107 36.000 0.00 0.00 0.00 1.94
577 578 9.228949 GATATATACTCCTCCGTCTAGTGAAAA 57.771 37.037 0.00 0.00 0.00 2.29
578 579 8.380867 TGATATATACTCCTCCGTCTAGTGAAA 58.619 37.037 0.00 0.00 0.00 2.69
579 580 7.914859 TGATATATACTCCTCCGTCTAGTGAA 58.085 38.462 0.00 0.00 0.00 3.18
580 581 7.492077 TGATATATACTCCTCCGTCTAGTGA 57.508 40.000 0.00 0.00 0.00 3.41
581 582 8.616942 CAATGATATATACTCCTCCGTCTAGTG 58.383 40.741 0.00 0.00 0.00 2.74
582 583 7.776030 CCAATGATATATACTCCTCCGTCTAGT 59.224 40.741 0.00 0.00 0.00 2.57
583 584 7.993758 TCCAATGATATATACTCCTCCGTCTAG 59.006 40.741 0.00 0.00 0.00 2.43
584 585 7.868974 TCCAATGATATATACTCCTCCGTCTA 58.131 38.462 0.00 0.00 0.00 2.59
585 586 6.732487 TCCAATGATATATACTCCTCCGTCT 58.268 40.000 0.00 0.00 0.00 4.18
586 587 7.589958 ATCCAATGATATATACTCCTCCGTC 57.410 40.000 0.00 0.00 0.00 4.79
587 588 7.619698 TGAATCCAATGATATATACTCCTCCGT 59.380 37.037 0.00 0.00 0.00 4.69
588 589 8.011844 TGAATCCAATGATATATACTCCTCCG 57.988 38.462 0.00 0.00 0.00 4.63
589 590 9.995003 GATGAATCCAATGATATATACTCCTCC 57.005 37.037 0.00 0.00 0.00 4.30
650 651 9.755804 TGCAGAAAACAATATGAACATTTACAA 57.244 25.926 0.00 0.00 0.00 2.41
651 652 9.755804 TTGCAGAAAACAATATGAACATTTACA 57.244 25.926 0.00 0.00 0.00 2.41
668 669 7.903995 AAAGTTTGATCAAGTTTGCAGAAAA 57.096 28.000 8.41 0.00 36.76 2.29
718 719 8.899771 CCTCCGTTTTTATTTACTCCACATATT 58.100 33.333 0.00 0.00 0.00 1.28
719 720 7.501225 CCCTCCGTTTTTATTTACTCCACATAT 59.499 37.037 0.00 0.00 0.00 1.78
720 721 6.824704 CCCTCCGTTTTTATTTACTCCACATA 59.175 38.462 0.00 0.00 0.00 2.29
721 722 5.650703 CCCTCCGTTTTTATTTACTCCACAT 59.349 40.000 0.00 0.00 0.00 3.21
722 723 5.005094 CCCTCCGTTTTTATTTACTCCACA 58.995 41.667 0.00 0.00 0.00 4.17
723 724 4.397103 CCCCTCCGTTTTTATTTACTCCAC 59.603 45.833 0.00 0.00 0.00 4.02
724 725 4.568169 CCCCCTCCGTTTTTATTTACTCCA 60.568 45.833 0.00 0.00 0.00 3.86
725 726 3.949754 CCCCCTCCGTTTTTATTTACTCC 59.050 47.826 0.00 0.00 0.00 3.85
726 727 3.379372 GCCCCCTCCGTTTTTATTTACTC 59.621 47.826 0.00 0.00 0.00 2.59
727 728 3.245336 TGCCCCCTCCGTTTTTATTTACT 60.245 43.478 0.00 0.00 0.00 2.24
728 729 3.090790 TGCCCCCTCCGTTTTTATTTAC 58.909 45.455 0.00 0.00 0.00 2.01
729 730 3.453059 TGCCCCCTCCGTTTTTATTTA 57.547 42.857 0.00 0.00 0.00 1.40
730 731 2.312424 TGCCCCCTCCGTTTTTATTT 57.688 45.000 0.00 0.00 0.00 1.40
731 732 2.107366 CATGCCCCCTCCGTTTTTATT 58.893 47.619 0.00 0.00 0.00 1.40
732 733 1.006639 ACATGCCCCCTCCGTTTTTAT 59.993 47.619 0.00 0.00 0.00 1.40
733 734 0.406361 ACATGCCCCCTCCGTTTTTA 59.594 50.000 0.00 0.00 0.00 1.52
734 735 1.155155 ACATGCCCCCTCCGTTTTT 59.845 52.632 0.00 0.00 0.00 1.94
735 736 1.606313 CACATGCCCCCTCCGTTTT 60.606 57.895 0.00 0.00 0.00 2.43
736 737 2.035626 CACATGCCCCCTCCGTTT 59.964 61.111 0.00 0.00 0.00 3.60
737 738 3.256960 ACACATGCCCCCTCCGTT 61.257 61.111 0.00 0.00 0.00 4.44
738 739 4.033776 CACACATGCCCCCTCCGT 62.034 66.667 0.00 0.00 0.00 4.69
739 740 2.665089 TACACACATGCCCCCTCCG 61.665 63.158 0.00 0.00 0.00 4.63
740 741 1.077716 GTACACACATGCCCCCTCC 60.078 63.158 0.00 0.00 0.00 4.30
741 742 1.449601 CGTACACACATGCCCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
742 743 1.774894 AACGTACACACATGCCCCCT 61.775 55.000 0.00 0.00 0.00 4.79
743 744 0.891904 AAACGTACACACATGCCCCC 60.892 55.000 0.00 0.00 0.00 5.40
744 745 1.810959 TAAACGTACACACATGCCCC 58.189 50.000 0.00 0.00 0.00 5.80
745 746 2.745281 ACATAAACGTACACACATGCCC 59.255 45.455 0.00 0.00 0.00 5.36
746 747 4.413495 AACATAAACGTACACACATGCC 57.587 40.909 0.00 0.00 0.00 4.40
747 748 9.365311 GATTATAACATAAACGTACACACATGC 57.635 33.333 0.00 0.00 0.00 4.06
788 789 2.040178 GATTCCTCTACACGACCCCAT 58.960 52.381 0.00 0.00 0.00 4.00
789 790 1.481871 GATTCCTCTACACGACCCCA 58.518 55.000 0.00 0.00 0.00 4.96
790 791 0.751452 GGATTCCTCTACACGACCCC 59.249 60.000 0.00 0.00 0.00 4.95
792 793 2.580966 GTGGATTCCTCTACACGACC 57.419 55.000 3.95 0.00 33.34 4.79
827 828 8.483218 CGTAAACATTGTTTGATTTGTGCAATA 58.517 29.630 22.04 0.00 0.00 1.90
854 855 1.512156 GGCTTCCGTTGCCTCGAAAA 61.512 55.000 0.00 0.00 46.38 2.29
898 899 1.375523 ATTCGAACCAGGTCACGGC 60.376 57.895 15.94 0.00 0.00 5.68
899 900 1.019278 CCATTCGAACCAGGTCACGG 61.019 60.000 15.94 4.04 0.00 4.94
901 902 1.002087 AGTCCATTCGAACCAGGTCAC 59.998 52.381 0.00 0.00 0.00 3.67
902 903 1.275291 GAGTCCATTCGAACCAGGTCA 59.725 52.381 0.00 0.00 0.00 4.02
903 904 1.275291 TGAGTCCATTCGAACCAGGTC 59.725 52.381 0.00 1.10 0.00 3.85
904 905 1.348064 TGAGTCCATTCGAACCAGGT 58.652 50.000 0.00 0.00 0.00 4.00
905 906 2.472695 TTGAGTCCATTCGAACCAGG 57.527 50.000 0.00 3.13 0.00 4.45
907 908 2.151202 GCTTTGAGTCCATTCGAACCA 58.849 47.619 0.00 0.00 0.00 3.67
910 911 1.001520 TCGGCTTTGAGTCCATTCGAA 59.998 47.619 0.00 0.00 0.00 3.71
911 912 0.606096 TCGGCTTTGAGTCCATTCGA 59.394 50.000 0.00 0.00 0.00 3.71
912 913 0.721718 GTCGGCTTTGAGTCCATTCG 59.278 55.000 0.00 0.00 0.00 3.34
913 914 1.087501 GGTCGGCTTTGAGTCCATTC 58.912 55.000 0.00 0.00 0.00 2.67
914 915 0.673644 CGGTCGGCTTTGAGTCCATT 60.674 55.000 0.00 0.00 0.00 3.16
915 916 1.079127 CGGTCGGCTTTGAGTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
916 917 2.204461 TCGGTCGGCTTTGAGTCCA 61.204 57.895 0.00 0.00 0.00 4.02
917 918 1.737008 GTCGGTCGGCTTTGAGTCC 60.737 63.158 0.00 0.00 0.00 3.85
940 941 1.442184 CAGTCGTCCCGTGAAGTCG 60.442 63.158 0.00 0.00 0.00 4.18
941 942 1.080705 CCAGTCGTCCCGTGAAGTC 60.081 63.158 0.00 0.00 0.00 3.01
942 943 1.803366 GACCAGTCGTCCCGTGAAGT 61.803 60.000 0.00 0.00 35.23 3.01
943 944 1.080705 GACCAGTCGTCCCGTGAAG 60.081 63.158 0.00 0.00 35.23 3.02
1187 1197 1.925972 AGAGGTCAGGAAAGGGGGC 60.926 63.158 0.00 0.00 0.00 5.80
1215 1225 1.131315 GGAGCAAACAAGAGATTCGCC 59.869 52.381 0.00 0.00 0.00 5.54
1478 1492 4.336889 AGTTCAACCTGAATCTCGAACA 57.663 40.909 0.00 0.00 38.79 3.18
1506 1520 7.775120 AGGATATCTGAATTCGCATTTTGTTT 58.225 30.769 2.05 0.00 0.00 2.83
1514 1528 9.383519 GGAATTATAAGGATATCTGAATTCGCA 57.616 33.333 2.05 0.00 34.29 5.10
1515 1529 9.606631 AGGAATTATAAGGATATCTGAATTCGC 57.393 33.333 2.05 5.99 34.29 4.70
1550 1594 7.482169 TTGCTTCTCTTCTAGATGGAACTTA 57.518 36.000 5.84 0.00 35.61 2.24
1557 1601 9.089601 CATATAGCATTGCTTCTCTTCTAGATG 57.910 37.037 17.71 5.34 40.44 2.90
1594 1638 4.721776 AGAGCAAGGGAAGGTATCAACATA 59.278 41.667 0.00 0.00 0.00 2.29
1703 1751 2.355818 GGATGGTTCTGGTTCTGGGTAC 60.356 54.545 0.00 0.00 0.00 3.34
1769 1817 2.969262 TGGTACCTCACAAGTCACATGA 59.031 45.455 14.36 0.00 0.00 3.07
1776 1824 6.668283 AGTGATATAACTGGTACCTCACAAGT 59.332 38.462 22.85 12.12 43.83 3.16
1777 1825 7.113658 AGTGATATAACTGGTACCTCACAAG 57.886 40.000 22.85 11.56 35.22 3.16
1778 1826 7.616542 TGTAGTGATATAACTGGTACCTCACAA 59.383 37.037 22.85 10.61 35.22 3.33
1779 1827 7.120716 TGTAGTGATATAACTGGTACCTCACA 58.879 38.462 22.85 11.23 35.22 3.58
1780 1828 7.578310 TGTAGTGATATAACTGGTACCTCAC 57.422 40.000 14.36 15.67 33.46 3.51
1781 1829 7.783119 ACATGTAGTGATATAACTGGTACCTCA 59.217 37.037 14.36 3.41 0.00 3.86
1782 1830 8.179509 ACATGTAGTGATATAACTGGTACCTC 57.820 38.462 14.36 0.43 0.00 3.85
1798 1846 6.691388 CATGATGAATTTCAGCACATGTAGTG 59.309 38.462 18.73 8.34 46.19 2.74
1845 1893 8.472683 TTTTAAAAATTCAATGTAGGATGCCG 57.527 30.769 0.00 0.00 0.00 5.69
1898 1946 2.022195 GCCTGATGCTGATGAACATGT 58.978 47.619 0.00 0.00 36.87 3.21
1925 1973 9.342308 TGATATGAGATGGGTTCTGAATTTAAC 57.658 33.333 0.00 0.00 33.74 2.01
1933 1981 5.407691 CGAACATGATATGAGATGGGTTCTG 59.592 44.000 0.00 0.00 33.74 3.02
1973 2021 7.545965 CAGCTGCAAGTTATTGTTACTAGTACT 59.454 37.037 0.00 0.00 38.76 2.73
1998 2213 5.067413 TCCGTAAACAATAAAACCAAGTGCA 59.933 36.000 0.00 0.00 0.00 4.57
1999 2214 5.521544 TCCGTAAACAATAAAACCAAGTGC 58.478 37.500 0.00 0.00 0.00 4.40
2002 2217 9.471084 AAATCTTCCGTAAACAATAAAACCAAG 57.529 29.630 0.00 0.00 0.00 3.61
2003 2218 9.250624 CAAATCTTCCGTAAACAATAAAACCAA 57.749 29.630 0.00 0.00 0.00 3.67
2042 2257 0.179018 GCACCCCTTGAGTGAACACT 60.179 55.000 7.20 7.20 45.84 3.55
2043 2258 1.172812 GGCACCCCTTGAGTGAACAC 61.173 60.000 0.00 0.00 37.42 3.32
2060 2275 2.054453 GCAACATCTCCCTTGGGGC 61.054 63.158 5.78 0.00 43.94 5.80
2080 2350 3.439129 GCACCACATAAGGTACCTGAAAC 59.561 47.826 17.14 0.00 40.77 2.78
2282 2554 3.192844 AGGCTTGAACATCTGCATTTGAG 59.807 43.478 3.26 0.00 0.00 3.02
2351 2623 0.533491 TACCTGTACGAAGGCGCATT 59.467 50.000 7.18 7.18 41.46 3.56
2520 3007 5.795972 AGATGATATGAGTGAGATGCCTTG 58.204 41.667 0.00 0.00 0.00 3.61
2568 3055 1.128136 CATCAACAGCTGCGAACTCAG 59.872 52.381 15.27 0.00 37.15 3.35
2576 3063 5.231568 GCAAATATTCTTCATCAACAGCTGC 59.768 40.000 15.27 0.00 0.00 5.25
2589 3076 7.927629 ACAAGTTGTGATGTTGCAAATATTCTT 59.072 29.630 7.96 0.00 0.00 2.52
2611 3098 4.210120 GTCTCAGTCAAAGCACACTACAAG 59.790 45.833 0.00 0.00 0.00 3.16
2629 3116 1.751437 ATCTGATCGTCCACGTCTCA 58.249 50.000 0.00 3.49 40.80 3.27
2706 3193 8.774586 GTCAATACAGCCGACATTTATTAGAAT 58.225 33.333 0.00 0.00 0.00 2.40
2759 3246 5.887598 TCCTGTGCAGCAATAATACTGATTT 59.112 36.000 0.00 0.00 35.90 2.17
2760 3247 5.439721 TCCTGTGCAGCAATAATACTGATT 58.560 37.500 0.00 0.00 35.90 2.57
2762 3249 4.486125 TCCTGTGCAGCAATAATACTGA 57.514 40.909 0.00 0.00 35.90 3.41
2763 3250 4.637534 AGTTCCTGTGCAGCAATAATACTG 59.362 41.667 0.00 0.00 36.96 2.74
2840 3330 1.390565 GCCTGAAGAATGCAGCTCAT 58.609 50.000 0.00 0.00 41.90 2.90
3290 3789 4.884164 CCGATGCCTTTCTTTTCCTCTATT 59.116 41.667 0.00 0.00 0.00 1.73
3299 3798 2.586648 AGGAACCGATGCCTTTCTTT 57.413 45.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.