Multiple sequence alignment - TraesCS1D01G252100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G252100 chr1D 100.000 4968 0 0 1 4968 344591906 344596873 0.000000e+00 9175
1 TraesCS1D01G252100 chr1B 93.260 1988 94 16 2677 4642 466090779 466088810 0.000000e+00 2892
2 TraesCS1D01G252100 chr1B 91.764 1542 63 18 1 1493 466092986 466091460 0.000000e+00 2085
3 TraesCS1D01G252100 chr1B 94.242 330 12 3 4645 4968 466088598 466088270 9.600000e-137 497
4 TraesCS1D01G252100 chr1B 89.500 200 11 4 1678 1877 466091477 466091288 1.380000e-60 244
5 TraesCS1D01G252100 chr1B 90.909 132 9 3 1500 1630 628047967 628047838 1.840000e-39 174
6 TraesCS1D01G252100 chr1A 94.902 1589 61 8 3396 4968 444126687 444128271 0.000000e+00 2468
7 TraesCS1D01G252100 chr1A 90.975 1097 68 17 2326 3409 444125586 444126664 0.000000e+00 1448
8 TraesCS1D01G252100 chr1A 86.394 904 58 33 616 1493 444124214 444125078 0.000000e+00 928
9 TraesCS1D01G252100 chr1A 91.697 542 24 6 1678 2212 444125061 444125588 0.000000e+00 732
10 TraesCS1D01G252100 chr1A 94.531 128 7 0 2203 2330 498452661 498452788 1.090000e-46 198
11 TraesCS1D01G252100 chr1A 91.176 102 9 0 66 167 444123824 444123925 6.710000e-29 139
12 TraesCS1D01G252100 chr2A 91.343 335 14 9 245 567 476213250 476212919 1.270000e-120 444
13 TraesCS1D01G252100 chr2A 87.562 402 19 10 597 977 476212831 476212440 2.120000e-118 436
14 TraesCS1D01G252100 chr2A 95.472 265 11 1 1 264 476213598 476213334 5.950000e-114 422
15 TraesCS1D01G252100 chr2A 96.721 122 4 0 2209 2330 606523686 606523807 2.340000e-48 204
16 TraesCS1D01G252100 chr3B 93.717 191 9 3 1492 1680 155415037 155414848 2.930000e-72 283
17 TraesCS1D01G252100 chr3B 90.576 191 13 4 1487 1677 97803679 97803864 1.070000e-61 248
18 TraesCS1D01G252100 chr3B 90.052 191 14 4 1487 1677 97790548 97790733 4.970000e-60 243
19 TraesCS1D01G252100 chr3B 77.660 188 33 8 1500 1681 810787271 810787087 6.800000e-19 106
20 TraesCS1D01G252100 chr2D 94.413 179 8 2 1500 1677 102663439 102663616 1.760000e-69 274
21 TraesCS1D01G252100 chr7A 93.855 179 9 2 1500 1677 70831655 70831832 8.200000e-68 268
22 TraesCS1D01G252100 chr7A 81.532 222 33 7 1906 2120 503449027 503448807 5.110000e-40 176
23 TraesCS1D01G252100 chr6A 90.270 185 17 1 1496 1680 156192676 156192493 1.790000e-59 241
24 TraesCS1D01G252100 chr6A 85.854 205 20 7 1927 2123 199815526 199815729 5.040000e-50 209
25 TraesCS1D01G252100 chr6A 93.182 132 8 1 2198 2328 22527307 22527176 5.080000e-45 193
26 TraesCS1D01G252100 chr4A 93.252 163 8 3 1515 1677 90435629 90435788 2.310000e-58 237
27 TraesCS1D01G252100 chr4A 83.182 220 26 8 1911 2123 556251693 556251908 1.830000e-44 191
28 TraesCS1D01G252100 chr4D 97.541 122 3 0 2210 2331 494875912 494876033 5.040000e-50 209
29 TraesCS1D01G252100 chr4D 92.424 132 8 2 2196 2327 55352429 55352558 2.360000e-43 187
30 TraesCS1D01G252100 chr4D 81.778 225 32 5 1906 2123 98888366 98888144 3.950000e-41 180
31 TraesCS1D01G252100 chr2B 94.656 131 7 0 2204 2334 329979296 329979426 2.340000e-48 204
32 TraesCS1D01G252100 chr6D 85.946 185 22 4 1905 2088 111627292 111627473 1.410000e-45 195
33 TraesCS1D01G252100 chr6D 83.824 204 20 8 1927 2123 147877711 147877514 1.100000e-41 182
34 TraesCS1D01G252100 chr4B 94.488 127 5 2 2203 2328 325710705 325710580 1.410000e-45 195
35 TraesCS1D01G252100 chr4B 84.577 201 22 6 1930 2123 464159055 464159253 1.830000e-44 191
36 TraesCS1D01G252100 chr4B 80.973 226 34 5 1906 2123 140706894 140706670 2.380000e-38 171
37 TraesCS1D01G252100 chr3A 95.082 122 6 0 2207 2328 638983764 638983643 5.080000e-45 193
38 TraesCS1D01G252100 chr7D 92.857 126 9 0 2209 2334 543628045 543628170 3.050000e-42 183
39 TraesCS1D01G252100 chr5D 84.831 178 22 1 1500 1677 382347214 382347386 1.840000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G252100 chr1D 344591906 344596873 4967 False 9175.0 9175 100.0000 1 4968 1 chr1D.!!$F1 4967
1 TraesCS1D01G252100 chr1B 466088270 466092986 4716 True 1429.5 2892 92.1915 1 4968 4 chr1B.!!$R2 4967
2 TraesCS1D01G252100 chr1A 444123824 444128271 4447 False 1143.0 2468 91.0288 66 4968 5 chr1A.!!$F2 4902
3 TraesCS1D01G252100 chr2A 476212440 476213598 1158 True 434.0 444 91.4590 1 977 3 chr2A.!!$R1 976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 785 0.588252 CCGCAATGCATACTAGGTGC 59.412 55.0 5.91 13.61 42.81 5.01 F
1612 1875 0.393537 CAGGTCATGGTTCTGCCCTC 60.394 60.0 0.00 0.00 36.04 4.30 F
2227 2497 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.00 44.66 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 2483 0.250597 AAGTTTTTCCGGACGGAGGG 60.251 55.0 13.64 0.0 46.06 4.30 R
2466 2742 0.796312 GTGTTGCGACAGTACATGGG 59.204 55.0 7.14 0.0 36.20 4.00 R
4202 4630 0.827368 GGGCACAAAGGGAAACAACA 59.173 50.0 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
370 476 7.017353 ACATCCCAGTCAGAATTGAGATATGAT 59.983 37.037 0.00 0.00 32.98 2.45
555 673 6.012658 TGTTGGCATCAAGATTTTGACTAC 57.987 37.500 0.00 0.00 45.54 2.73
562 697 6.565811 GCATCAAGATTTTGACTACGTTGTCA 60.566 38.462 25.49 25.49 45.54 3.58
602 785 0.588252 CCGCAATGCATACTAGGTGC 59.412 55.000 5.91 13.61 42.81 5.01
640 823 3.013921 TGTCTCCTGTTGAACACCAAAC 58.986 45.455 0.00 0.00 36.36 2.93
684 870 0.610687 CTGGAGAGAAGTCCACCACC 59.389 60.000 0.00 0.00 41.99 4.61
835 1038 4.286032 ACATTTCAGTTCCAGTAGCCACTA 59.714 41.667 0.00 0.00 32.21 2.74
836 1039 3.955650 TTCAGTTCCAGTAGCCACTAC 57.044 47.619 0.00 0.00 37.23 2.73
873 1076 2.281484 GCCAAGTGCCAACCGAGA 60.281 61.111 0.00 0.00 0.00 4.04
889 1092 2.436824 GAAGAGCTGGCCCGTTCC 60.437 66.667 7.40 0.00 0.00 3.62
911 1114 4.081309 CCATGTGAAATTCCTGCCTTTCAT 60.081 41.667 1.55 0.00 41.80 2.57
945 1167 6.035112 GCTACAGAACCTTATCAGAAAACGAG 59.965 42.308 0.00 0.00 0.00 4.18
1041 1263 2.169789 CAAGCTGAGGATGGCGTCG 61.170 63.158 0.00 0.00 0.00 5.12
1237 1474 1.518572 GTGGTGGCTATGTCGTCGG 60.519 63.158 0.00 0.00 0.00 4.79
1348 1585 1.605712 GCACCGAGTAAGAACAGCAGT 60.606 52.381 0.00 0.00 0.00 4.40
1415 1671 4.499019 CGTGGAATTAATTATGTGGGTGCC 60.499 45.833 0.00 0.00 0.00 5.01
1464 1727 4.607293 TGATGGTATCATGGCTGTCTAC 57.393 45.455 0.00 0.00 33.59 2.59
1467 1730 3.916035 TGGTATCATGGCTGTCTACTCT 58.084 45.455 0.00 0.00 0.00 3.24
1493 1756 5.916318 TCAACAAACAATGCTCCATTTTCT 58.084 33.333 0.00 0.00 31.05 2.52
1495 1758 6.479660 TCAACAAACAATGCTCCATTTTCTTC 59.520 34.615 0.00 0.00 31.05 2.87
1496 1759 6.165700 ACAAACAATGCTCCATTTTCTTCT 57.834 33.333 0.00 0.00 31.05 2.85
1498 1761 6.703165 ACAAACAATGCTCCATTTTCTTCTTC 59.297 34.615 0.00 0.00 31.05 2.87
1499 1762 6.661304 AACAATGCTCCATTTTCTTCTTCT 57.339 33.333 0.00 0.00 31.05 2.85
1500 1763 6.661304 ACAATGCTCCATTTTCTTCTTCTT 57.339 33.333 0.00 0.00 31.05 2.52
1501 1764 7.059202 ACAATGCTCCATTTTCTTCTTCTTT 57.941 32.000 0.00 0.00 31.05 2.52
1502 1765 7.503549 ACAATGCTCCATTTTCTTCTTCTTTT 58.496 30.769 0.00 0.00 31.05 2.27
1503 1766 7.989170 ACAATGCTCCATTTTCTTCTTCTTTTT 59.011 29.630 0.00 0.00 31.05 1.94
1522 1785 5.968528 TTTTTGCGGGTGAAATACTGTAT 57.031 34.783 0.00 0.00 0.00 2.29
1523 1786 5.968528 TTTTGCGGGTGAAATACTGTATT 57.031 34.783 7.22 7.22 0.00 1.89
1524 1787 7.450124 TTTTTGCGGGTGAAATACTGTATTA 57.550 32.000 13.07 0.00 0.00 0.98
1525 1788 6.425577 TTTGCGGGTGAAATACTGTATTAC 57.574 37.500 13.07 8.78 0.00 1.89
1526 1789 5.347620 TGCGGGTGAAATACTGTATTACT 57.652 39.130 13.07 0.00 0.00 2.24
1527 1790 5.353938 TGCGGGTGAAATACTGTATTACTC 58.646 41.667 13.07 8.09 0.00 2.59
1528 1791 5.105269 TGCGGGTGAAATACTGTATTACTCA 60.105 40.000 13.07 11.17 0.00 3.41
1529 1792 5.813672 GCGGGTGAAATACTGTATTACTCAA 59.186 40.000 13.07 0.00 0.00 3.02
1530 1793 6.238022 GCGGGTGAAATACTGTATTACTCAAC 60.238 42.308 16.57 16.57 0.00 3.18
1531 1794 7.039882 CGGGTGAAATACTGTATTACTCAACT 58.960 38.462 20.97 4.87 28.35 3.16
1532 1795 7.222224 CGGGTGAAATACTGTATTACTCAACTC 59.778 40.741 20.97 14.05 28.35 3.01
1533 1796 7.222224 GGGTGAAATACTGTATTACTCAACTCG 59.778 40.741 20.97 0.00 28.35 4.18
1534 1797 7.972277 GGTGAAATACTGTATTACTCAACTCGA 59.028 37.037 17.18 0.00 0.00 4.04
1535 1798 9.350357 GTGAAATACTGTATTACTCAACTCGAA 57.650 33.333 13.07 0.00 0.00 3.71
1536 1799 9.917129 TGAAATACTGTATTACTCAACTCGAAA 57.083 29.630 13.07 0.00 0.00 3.46
1542 1805 9.268268 ACTGTATTACTCAACTCGAAAAATTCA 57.732 29.630 0.00 0.00 0.00 2.57
1550 1813 8.783093 ACTCAACTCGAAAAATTCATACAATCA 58.217 29.630 0.00 0.00 0.00 2.57
1551 1814 9.611284 CTCAACTCGAAAAATTCATACAATCAA 57.389 29.630 0.00 0.00 0.00 2.57
1554 1817 8.826546 ACTCGAAAAATTCATACAATCAATCG 57.173 30.769 0.00 0.00 0.00 3.34
1555 1818 8.450964 ACTCGAAAAATTCATACAATCAATCGT 58.549 29.630 0.00 0.00 0.00 3.73
1556 1819 9.914923 CTCGAAAAATTCATACAATCAATCGTA 57.085 29.630 0.00 0.00 0.00 3.43
1557 1820 9.914923 TCGAAAAATTCATACAATCAATCGTAG 57.085 29.630 0.00 0.00 0.00 3.51
1558 1821 9.914923 CGAAAAATTCATACAATCAATCGTAGA 57.085 29.630 0.00 0.00 45.75 2.59
1565 1828 9.653287 TTCATACAATCAATCGTAGAAAGTTCT 57.347 29.630 0.00 0.00 43.58 3.01
1566 1829 9.087424 TCATACAATCAATCGTAGAAAGTTCTG 57.913 33.333 3.76 0.00 43.58 3.02
1567 1830 8.873830 CATACAATCAATCGTAGAAAGTTCTGT 58.126 33.333 3.76 0.00 43.58 3.41
1569 1832 8.467402 ACAATCAATCGTAGAAAGTTCTGTAG 57.533 34.615 3.76 0.00 43.58 2.74
1570 1833 7.063544 ACAATCAATCGTAGAAAGTTCTGTAGC 59.936 37.037 3.76 0.00 43.58 3.58
1571 1834 6.020971 TCAATCGTAGAAAGTTCTGTAGCA 57.979 37.500 3.76 0.00 43.58 3.49
1572 1835 6.452242 TCAATCGTAGAAAGTTCTGTAGCAA 58.548 36.000 3.76 0.00 43.58 3.91
1573 1836 6.365247 TCAATCGTAGAAAGTTCTGTAGCAAC 59.635 38.462 3.76 0.00 43.58 4.17
1574 1837 5.449107 TCGTAGAAAGTTCTGTAGCAACT 57.551 39.130 3.76 0.00 38.19 3.16
1575 1838 6.564709 TCGTAGAAAGTTCTGTAGCAACTA 57.435 37.500 3.76 0.00 38.19 2.24
1576 1839 6.973843 TCGTAGAAAGTTCTGTAGCAACTAA 58.026 36.000 3.76 0.00 38.19 2.24
1577 1840 7.082602 TCGTAGAAAGTTCTGTAGCAACTAAG 58.917 38.462 3.76 0.00 38.19 2.18
1578 1841 6.308282 CGTAGAAAGTTCTGTAGCAACTAAGG 59.692 42.308 3.76 0.00 38.19 2.69
1579 1842 5.552178 AGAAAGTTCTGTAGCAACTAAGGG 58.448 41.667 0.00 0.00 35.89 3.95
1580 1843 3.336138 AGTTCTGTAGCAACTAAGGGC 57.664 47.619 0.00 0.00 32.08 5.19
1581 1844 2.027100 AGTTCTGTAGCAACTAAGGGCC 60.027 50.000 0.00 0.00 32.08 5.80
1582 1845 0.909623 TCTGTAGCAACTAAGGGCCC 59.090 55.000 16.46 16.46 0.00 5.80
1583 1846 0.912486 CTGTAGCAACTAAGGGCCCT 59.088 55.000 22.28 22.28 0.00 5.19
1584 1847 0.618458 TGTAGCAACTAAGGGCCCTG 59.382 55.000 29.50 17.44 0.00 4.45
1585 1848 0.909623 GTAGCAACTAAGGGCCCTGA 59.090 55.000 29.50 19.35 0.00 3.86
1586 1849 1.490910 GTAGCAACTAAGGGCCCTGAT 59.509 52.381 29.50 15.30 0.00 2.90
1587 1850 0.548510 AGCAACTAAGGGCCCTGATC 59.451 55.000 29.50 11.76 0.00 2.92
1588 1851 0.548510 GCAACTAAGGGCCCTGATCT 59.451 55.000 29.50 12.92 0.00 2.75
1589 1852 1.768870 GCAACTAAGGGCCCTGATCTA 59.231 52.381 29.50 13.47 0.00 1.98
1590 1853 2.172717 GCAACTAAGGGCCCTGATCTAA 59.827 50.000 29.50 6.04 0.00 2.10
1591 1854 3.181439 GCAACTAAGGGCCCTGATCTAAT 60.181 47.826 29.50 10.66 0.00 1.73
1592 1855 4.646572 CAACTAAGGGCCCTGATCTAATC 58.353 47.826 29.50 0.00 0.00 1.75
1593 1856 3.252351 ACTAAGGGCCCTGATCTAATCC 58.748 50.000 29.50 0.00 0.00 3.01
1594 1857 2.212752 AAGGGCCCTGATCTAATCCA 57.787 50.000 29.50 0.00 0.00 3.41
1595 1858 1.739750 AGGGCCCTGATCTAATCCAG 58.260 55.000 28.05 0.00 0.00 3.86
1597 1860 1.439543 GGCCCTGATCTAATCCAGGT 58.560 55.000 0.00 0.00 46.47 4.00
1598 1861 1.349357 GGCCCTGATCTAATCCAGGTC 59.651 57.143 0.00 0.00 46.47 3.85
1599 1862 2.050144 GCCCTGATCTAATCCAGGTCA 58.950 52.381 0.00 0.00 46.47 4.02
1600 1863 2.641815 GCCCTGATCTAATCCAGGTCAT 59.358 50.000 0.00 0.00 43.59 3.06
1601 1864 3.558746 GCCCTGATCTAATCCAGGTCATG 60.559 52.174 0.00 0.00 43.59 3.07
1609 1872 4.326255 CCAGGTCATGGTTCTGCC 57.674 61.111 0.00 0.00 44.91 4.85
1610 1873 1.379044 CCAGGTCATGGTTCTGCCC 60.379 63.158 0.00 0.00 44.91 5.36
1611 1874 1.687612 CAGGTCATGGTTCTGCCCT 59.312 57.895 0.00 0.00 36.04 5.19
1612 1875 0.393537 CAGGTCATGGTTCTGCCCTC 60.394 60.000 0.00 0.00 36.04 4.30
1613 1876 0.548682 AGGTCATGGTTCTGCCCTCT 60.549 55.000 0.00 0.00 36.04 3.69
1614 1877 1.204146 GGTCATGGTTCTGCCCTCTA 58.796 55.000 0.00 0.00 36.04 2.43
1615 1878 1.559682 GGTCATGGTTCTGCCCTCTAA 59.440 52.381 0.00 0.00 36.04 2.10
1616 1879 2.026262 GGTCATGGTTCTGCCCTCTAAA 60.026 50.000 0.00 0.00 36.04 1.85
1617 1880 3.010420 GTCATGGTTCTGCCCTCTAAAC 58.990 50.000 0.00 0.00 36.04 2.01
1618 1881 2.642311 TCATGGTTCTGCCCTCTAAACA 59.358 45.455 0.00 0.00 36.04 2.83
1619 1882 3.073798 TCATGGTTCTGCCCTCTAAACAA 59.926 43.478 0.00 0.00 36.04 2.83
1620 1883 3.140325 TGGTTCTGCCCTCTAAACAAG 57.860 47.619 0.00 0.00 36.04 3.16
1621 1884 1.813178 GGTTCTGCCCTCTAAACAAGC 59.187 52.381 0.00 0.00 0.00 4.01
1622 1885 2.504367 GTTCTGCCCTCTAAACAAGCA 58.496 47.619 0.00 0.00 0.00 3.91
1623 1886 2.884639 GTTCTGCCCTCTAAACAAGCAA 59.115 45.455 0.00 0.00 32.14 3.91
1624 1887 3.222173 TCTGCCCTCTAAACAAGCAAA 57.778 42.857 0.00 0.00 32.14 3.68
1625 1888 2.884639 TCTGCCCTCTAAACAAGCAAAC 59.115 45.455 0.00 0.00 32.14 2.93
1626 1889 2.887152 CTGCCCTCTAAACAAGCAAACT 59.113 45.455 0.00 0.00 32.14 2.66
1627 1890 3.295973 TGCCCTCTAAACAAGCAAACTT 58.704 40.909 0.00 0.00 36.19 2.66
1628 1891 4.465886 TGCCCTCTAAACAAGCAAACTTA 58.534 39.130 0.00 0.00 33.74 2.24
1629 1892 4.518970 TGCCCTCTAAACAAGCAAACTTAG 59.481 41.667 0.00 0.00 33.74 2.18
1630 1893 4.616143 GCCCTCTAAACAAGCAAACTTAGC 60.616 45.833 0.00 0.00 33.74 3.09
1631 1894 4.762251 CCCTCTAAACAAGCAAACTTAGCT 59.238 41.667 0.00 0.00 45.97 3.32
1632 1895 5.938125 CCCTCTAAACAAGCAAACTTAGCTA 59.062 40.000 0.00 0.00 42.53 3.32
1633 1896 6.430000 CCCTCTAAACAAGCAAACTTAGCTAA 59.570 38.462 5.94 5.94 42.53 3.09
1634 1897 7.361286 CCCTCTAAACAAGCAAACTTAGCTAAG 60.361 40.741 28.16 28.16 42.53 2.18
1635 1898 6.899114 TCTAAACAAGCAAACTTAGCTAAGC 58.101 36.000 29.39 18.29 42.53 3.09
1636 1899 5.774498 AAACAAGCAAACTTAGCTAAGCT 57.226 34.783 29.39 20.10 42.53 3.74
1637 1900 6.877611 AAACAAGCAAACTTAGCTAAGCTA 57.122 33.333 29.39 0.00 42.53 3.32
1638 1901 7.454260 AAACAAGCAAACTTAGCTAAGCTAT 57.546 32.000 29.39 15.54 42.53 2.97
1639 1902 6.670077 ACAAGCAAACTTAGCTAAGCTATC 57.330 37.500 29.39 17.55 42.53 2.08
1640 1903 6.173339 ACAAGCAAACTTAGCTAAGCTATCA 58.827 36.000 29.39 0.00 42.53 2.15
1641 1904 6.092807 ACAAGCAAACTTAGCTAAGCTATCAC 59.907 38.462 29.39 15.92 42.53 3.06
1642 1905 5.983540 AGCAAACTTAGCTAAGCTATCACT 58.016 37.500 29.39 17.61 41.01 3.41
1643 1906 7.113658 AGCAAACTTAGCTAAGCTATCACTA 57.886 36.000 29.39 0.00 41.01 2.74
1644 1907 7.556844 AGCAAACTTAGCTAAGCTATCACTAA 58.443 34.615 29.39 0.00 41.01 2.24
1645 1908 7.492994 AGCAAACTTAGCTAAGCTATCACTAAC 59.507 37.037 29.39 10.77 41.01 2.34
1646 1909 7.254488 GCAAACTTAGCTAAGCTATCACTAACC 60.254 40.741 29.39 5.75 41.01 2.85
1647 1910 7.663043 AACTTAGCTAAGCTATCACTAACCT 57.337 36.000 29.39 6.05 41.01 3.50
1648 1911 7.663043 ACTTAGCTAAGCTATCACTAACCTT 57.337 36.000 29.39 5.64 41.01 3.50
1649 1912 8.763984 ACTTAGCTAAGCTATCACTAACCTTA 57.236 34.615 29.39 0.00 41.01 2.69
1650 1913 9.369672 ACTTAGCTAAGCTATCACTAACCTTAT 57.630 33.333 29.39 4.66 41.01 1.73
1653 1916 8.485578 AGCTAAGCTATCACTAACCTTATTCT 57.514 34.615 0.00 0.00 36.99 2.40
1654 1917 8.364142 AGCTAAGCTATCACTAACCTTATTCTG 58.636 37.037 0.00 0.00 36.99 3.02
1655 1918 7.600752 GCTAAGCTATCACTAACCTTATTCTGG 59.399 40.741 0.00 0.00 0.00 3.86
1656 1919 5.859495 AGCTATCACTAACCTTATTCTGGC 58.141 41.667 0.00 0.00 0.00 4.85
1657 1920 5.604650 AGCTATCACTAACCTTATTCTGGCT 59.395 40.000 0.00 0.00 0.00 4.75
1658 1921 6.782988 AGCTATCACTAACCTTATTCTGGCTA 59.217 38.462 0.00 0.00 0.00 3.93
1659 1922 6.869388 GCTATCACTAACCTTATTCTGGCTAC 59.131 42.308 0.00 0.00 0.00 3.58
1660 1923 5.258456 TCACTAACCTTATTCTGGCTACG 57.742 43.478 0.00 0.00 0.00 3.51
1661 1924 4.951715 TCACTAACCTTATTCTGGCTACGA 59.048 41.667 0.00 0.00 0.00 3.43
1662 1925 5.597182 TCACTAACCTTATTCTGGCTACGAT 59.403 40.000 0.00 0.00 0.00 3.73
1663 1926 6.097839 TCACTAACCTTATTCTGGCTACGATT 59.902 38.462 0.00 0.00 0.00 3.34
1664 1927 6.201044 CACTAACCTTATTCTGGCTACGATTG 59.799 42.308 0.00 0.00 0.00 2.67
1665 1928 5.353394 AACCTTATTCTGGCTACGATTGA 57.647 39.130 0.00 0.00 0.00 2.57
1666 1929 5.552870 ACCTTATTCTGGCTACGATTGAT 57.447 39.130 0.00 0.00 0.00 2.57
1667 1930 6.665992 ACCTTATTCTGGCTACGATTGATA 57.334 37.500 0.00 0.00 0.00 2.15
1668 1931 7.246171 ACCTTATTCTGGCTACGATTGATAT 57.754 36.000 0.00 0.00 0.00 1.63
1669 1932 7.099764 ACCTTATTCTGGCTACGATTGATATG 58.900 38.462 0.00 0.00 0.00 1.78
1670 1933 7.039011 ACCTTATTCTGGCTACGATTGATATGA 60.039 37.037 0.00 0.00 0.00 2.15
1671 1934 7.490725 CCTTATTCTGGCTACGATTGATATGAG 59.509 40.741 0.00 0.00 0.00 2.90
1672 1935 5.791336 TTCTGGCTACGATTGATATGAGT 57.209 39.130 0.00 0.00 0.00 3.41
1673 1936 6.894339 TTCTGGCTACGATTGATATGAGTA 57.106 37.500 0.00 0.00 0.00 2.59
1674 1937 6.894339 TCTGGCTACGATTGATATGAGTAA 57.106 37.500 0.00 0.00 0.00 2.24
1675 1938 7.468141 TCTGGCTACGATTGATATGAGTAAT 57.532 36.000 0.00 0.00 0.00 1.89
1676 1939 8.575649 TCTGGCTACGATTGATATGAGTAATA 57.424 34.615 0.00 0.00 0.00 0.98
1677 1940 9.020731 TCTGGCTACGATTGATATGAGTAATAA 57.979 33.333 0.00 0.00 0.00 1.40
1678 1941 9.639601 CTGGCTACGATTGATATGAGTAATAAA 57.360 33.333 0.00 0.00 0.00 1.40
1679 1942 9.990360 TGGCTACGATTGATATGAGTAATAAAA 57.010 29.630 0.00 0.00 0.00 1.52
1689 1952 9.625747 TGATATGAGTAATAAAACAATGCTCCA 57.374 29.630 0.00 0.00 0.00 3.86
1694 1957 9.638239 TGAGTAATAAAACAATGCTCCATTTTC 57.362 29.630 0.00 0.00 31.05 2.29
1695 1958 9.638239 GAGTAATAAAACAATGCTCCATTTTCA 57.362 29.630 0.00 0.00 31.05 2.69
1704 1967 7.894376 CAATGCTCCATTTTCATTGTAAGTT 57.106 32.000 6.14 0.00 41.05 2.66
1705 1968 8.984891 CAATGCTCCATTTTCATTGTAAGTTA 57.015 30.769 6.14 0.00 41.05 2.24
1706 1969 9.079833 CAATGCTCCATTTTCATTGTAAGTTAG 57.920 33.333 6.14 0.00 41.05 2.34
1740 2003 1.068434 TCGTCAGTGTGATCAACTGCA 59.932 47.619 22.67 14.18 0.00 4.41
1745 2008 3.187022 TCAGTGTGATCAACTGCAAATCG 59.813 43.478 22.67 7.53 0.00 3.34
1753 2016 6.017934 GTGATCAACTGCAAATCGGTATGTAT 60.018 38.462 0.00 0.00 32.95 2.29
1817 2080 2.002586 GTACTGGCATGCACACTACTG 58.997 52.381 21.36 7.33 0.00 2.74
1849 2117 4.080356 ACTCCTATCCTAGTTGCAATGCAA 60.080 41.667 17.55 17.55 46.80 4.08
1950 2220 4.105057 TCCTTTAGAGCCCTTTGGTTTGTA 59.895 41.667 0.00 0.00 0.00 2.41
2038 2308 7.259088 ACATTAGTTCAGACCTACTGGAAAT 57.741 36.000 0.00 0.00 45.76 2.17
2069 2339 8.847196 CATTCCTATGAATCAAATGACATCACT 58.153 33.333 0.39 0.00 39.20 3.41
2089 2359 6.102663 TCACTTTTGCTATAGAACTGAGAGC 58.897 40.000 3.21 0.00 0.00 4.09
2090 2360 5.293079 CACTTTTGCTATAGAACTGAGAGCC 59.707 44.000 3.21 0.00 31.98 4.70
2091 2361 3.717400 TTGCTATAGAACTGAGAGCCG 57.283 47.619 3.21 0.00 31.98 5.52
2092 2362 2.656002 TGCTATAGAACTGAGAGCCGT 58.344 47.619 3.21 0.00 31.98 5.68
2093 2363 2.619177 TGCTATAGAACTGAGAGCCGTC 59.381 50.000 3.21 0.00 31.98 4.79
2094 2364 2.882137 GCTATAGAACTGAGAGCCGTCT 59.118 50.000 3.21 0.00 34.86 4.18
2114 2384 7.390027 CCGTCTCATTTCCTATGATATTCCTT 58.610 38.462 0.00 0.00 0.00 3.36
2138 2408 1.075601 ATGAACCAAAGGAGGCCTGA 58.924 50.000 12.00 0.00 32.13 3.86
2159 2429 3.860641 ACTGGTTTGCAAAAACTTCTGG 58.139 40.909 14.67 1.62 33.37 3.86
2164 2434 3.883830 TTGCAAAAACTTCTGGAGCAA 57.116 38.095 0.00 0.00 38.07 3.91
2179 2449 5.769662 TCTGGAGCAATTAGAAAAGCAAGAA 59.230 36.000 0.00 0.00 0.00 2.52
2205 2475 8.608185 TCAAGAAAATAGGCATCCCTTTTATT 57.392 30.769 0.00 0.00 42.87 1.40
2212 2482 9.660544 AAATAGGCATCCCTTTTATTTGATACT 57.339 29.630 0.00 0.00 42.87 2.12
2213 2483 8.870075 ATAGGCATCCCTTTTATTTGATACTC 57.130 34.615 0.00 0.00 42.87 2.59
2214 2484 6.071320 AGGCATCCCTTTTATTTGATACTCC 58.929 40.000 0.00 0.00 38.74 3.85
2215 2485 5.243954 GGCATCCCTTTTATTTGATACTCCC 59.756 44.000 0.00 0.00 0.00 4.30
2216 2486 6.071320 GCATCCCTTTTATTTGATACTCCCT 58.929 40.000 0.00 0.00 0.00 4.20
2217 2487 6.207614 GCATCCCTTTTATTTGATACTCCCTC 59.792 42.308 0.00 0.00 0.00 4.30
2218 2488 6.262056 TCCCTTTTATTTGATACTCCCTCC 57.738 41.667 0.00 0.00 0.00 4.30
2219 2489 5.063880 CCCTTTTATTTGATACTCCCTCCG 58.936 45.833 0.00 0.00 0.00 4.63
2220 2490 5.397559 CCCTTTTATTTGATACTCCCTCCGT 60.398 44.000 0.00 0.00 0.00 4.69
2221 2491 5.758784 CCTTTTATTTGATACTCCCTCCGTC 59.241 44.000 0.00 0.00 0.00 4.79
2222 2492 4.950205 TTATTTGATACTCCCTCCGTCC 57.050 45.455 0.00 0.00 0.00 4.79
2223 2493 1.108776 TTTGATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
2224 2494 0.754217 TTGATACTCCCTCCGTCCGG 60.754 60.000 0.00 0.00 0.00 5.14
2225 2495 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
2226 2496 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
2227 2497 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2228 2498 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
2229 2499 1.123246 ACTCCCTCCGTCCGGAAAAA 61.123 55.000 5.23 0.00 44.66 1.94
2230 2500 0.672711 CTCCCTCCGTCCGGAAAAAC 60.673 60.000 5.23 0.00 44.66 2.43
2231 2501 1.123246 TCCCTCCGTCCGGAAAAACT 61.123 55.000 5.23 0.00 44.66 2.66
2232 2502 0.250597 CCCTCCGTCCGGAAAAACTT 60.251 55.000 5.23 0.00 44.66 2.66
2233 2503 0.872388 CCTCCGTCCGGAAAAACTTG 59.128 55.000 5.23 0.00 44.66 3.16
2234 2504 1.589803 CTCCGTCCGGAAAAACTTGT 58.410 50.000 5.23 0.00 44.66 3.16
2235 2505 1.529865 CTCCGTCCGGAAAAACTTGTC 59.470 52.381 5.23 0.00 44.66 3.18
2236 2506 0.589708 CCGTCCGGAAAAACTTGTCC 59.410 55.000 5.23 0.00 37.50 4.02
2237 2507 0.589708 CGTCCGGAAAAACTTGTCCC 59.410 55.000 5.23 0.00 0.00 4.46
2238 2508 1.682740 GTCCGGAAAAACTTGTCCCA 58.317 50.000 5.23 0.00 0.00 4.37
2239 2509 2.025898 GTCCGGAAAAACTTGTCCCAA 58.974 47.619 5.23 0.00 0.00 4.12
2240 2510 2.034179 GTCCGGAAAAACTTGTCCCAAG 59.966 50.000 5.23 2.54 0.00 3.61
2241 2511 1.269569 CCGGAAAAACTTGTCCCAAGC 60.270 52.381 0.00 0.00 0.00 4.01
2242 2512 1.681264 CGGAAAAACTTGTCCCAAGCT 59.319 47.619 3.96 0.00 0.00 3.74
2243 2513 2.100749 CGGAAAAACTTGTCCCAAGCTT 59.899 45.455 0.00 0.00 0.00 3.74
2244 2514 3.457234 GGAAAAACTTGTCCCAAGCTTG 58.543 45.455 19.93 19.93 0.00 4.01
2245 2515 3.118775 GGAAAAACTTGTCCCAAGCTTGT 60.119 43.478 24.35 1.49 0.00 3.16
2246 2516 4.503910 GAAAAACTTGTCCCAAGCTTGTT 58.496 39.130 24.35 8.38 0.00 2.83
2247 2517 4.551702 AAAACTTGTCCCAAGCTTGTTT 57.448 36.364 24.35 13.36 0.00 2.83
2248 2518 3.801114 AACTTGTCCCAAGCTTGTTTC 57.199 42.857 24.35 13.85 0.00 2.78
2249 2519 3.018423 ACTTGTCCCAAGCTTGTTTCT 57.982 42.857 24.35 0.00 0.00 2.52
2250 2520 2.952310 ACTTGTCCCAAGCTTGTTTCTC 59.048 45.455 24.35 10.65 0.00 2.87
2251 2521 2.727123 TGTCCCAAGCTTGTTTCTCA 57.273 45.000 24.35 12.85 0.00 3.27
2252 2522 3.011566 TGTCCCAAGCTTGTTTCTCAA 57.988 42.857 24.35 1.41 34.61 3.02
2253 2523 3.360867 TGTCCCAAGCTTGTTTCTCAAA 58.639 40.909 24.35 0.00 35.48 2.69
2254 2524 3.960102 TGTCCCAAGCTTGTTTCTCAAAT 59.040 39.130 24.35 0.00 35.48 2.32
2255 2525 4.202141 TGTCCCAAGCTTGTTTCTCAAATG 60.202 41.667 24.35 5.47 35.48 2.32
2256 2526 3.321682 TCCCAAGCTTGTTTCTCAAATGG 59.678 43.478 24.35 14.01 35.48 3.16
2257 2527 3.321682 CCCAAGCTTGTTTCTCAAATGGA 59.678 43.478 24.35 0.00 36.92 3.41
2258 2528 4.020839 CCCAAGCTTGTTTCTCAAATGGAT 60.021 41.667 24.35 0.00 36.92 3.41
2259 2529 4.927425 CCAAGCTTGTTTCTCAAATGGATG 59.073 41.667 24.35 0.00 36.92 3.51
2260 2530 5.510179 CCAAGCTTGTTTCTCAAATGGATGT 60.510 40.000 24.35 0.00 36.92 3.06
2261 2531 6.294675 CCAAGCTTGTTTCTCAAATGGATGTA 60.295 38.462 24.35 0.00 36.92 2.29
2262 2532 7.318141 CAAGCTTGTTTCTCAAATGGATGTAT 58.682 34.615 18.65 0.00 35.48 2.29
2263 2533 7.093322 AGCTTGTTTCTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
2264 2534 6.888632 AGCTTGTTTCTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
2265 2535 8.049117 AGCTTGTTTCTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
2266 2536 8.341173 GCTTGTTTCTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
2267 2537 7.792374 TGTTTCTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
2268 2538 7.337938 TGTTTCTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
2269 2539 7.280876 TGTTTCTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
2270 2540 6.737720 TCTCAAATGGATGTATCTAGCACT 57.262 37.500 0.00 0.00 0.00 4.40
2271 2541 7.839680 TCTCAAATGGATGTATCTAGCACTA 57.160 36.000 0.00 0.00 0.00 2.74
2272 2542 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
2273 2543 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
2274 2544 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2275 2545 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2276 2546 9.113838 CAAATGGATGTATCTAGCACTAACTTT 57.886 33.333 0.00 0.00 0.00 2.66
2277 2547 8.668510 AATGGATGTATCTAGCACTAACTTTG 57.331 34.615 0.00 0.00 0.00 2.77
2278 2548 7.182817 TGGATGTATCTAGCACTAACTTTGT 57.817 36.000 0.00 0.00 0.00 2.83
2279 2549 7.041721 TGGATGTATCTAGCACTAACTTTGTG 58.958 38.462 0.00 0.00 38.36 3.33
2291 2561 6.709643 CACTAACTTTGTGCTAGATACATGC 58.290 40.000 0.00 0.00 0.00 4.06
2292 2562 6.313658 CACTAACTTTGTGCTAGATACATGCA 59.686 38.462 0.00 0.00 0.00 3.96
2293 2563 7.011763 CACTAACTTTGTGCTAGATACATGCAT 59.988 37.037 0.00 0.00 39.00 3.96
2294 2564 6.764308 AACTTTGTGCTAGATACATGCATT 57.236 33.333 0.00 0.00 39.00 3.56
2295 2565 6.764308 ACTTTGTGCTAGATACATGCATTT 57.236 33.333 0.00 0.00 39.00 2.32
2296 2566 6.558009 ACTTTGTGCTAGATACATGCATTTG 58.442 36.000 0.00 0.00 39.00 2.32
2297 2567 6.375174 ACTTTGTGCTAGATACATGCATTTGA 59.625 34.615 0.00 0.00 39.00 2.69
2298 2568 5.996669 TGTGCTAGATACATGCATTTGAG 57.003 39.130 0.00 0.00 39.00 3.02
2299 2569 4.818005 TGTGCTAGATACATGCATTTGAGG 59.182 41.667 0.00 0.00 39.00 3.86
2300 2570 4.214971 GTGCTAGATACATGCATTTGAGGG 59.785 45.833 0.00 0.00 39.00 4.30
2301 2571 4.102996 TGCTAGATACATGCATTTGAGGGA 59.897 41.667 0.00 0.00 0.00 4.20
2302 2572 4.453819 GCTAGATACATGCATTTGAGGGAC 59.546 45.833 0.00 0.00 0.00 4.46
2303 2573 4.508551 AGATACATGCATTTGAGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
2304 2574 4.858850 AGATACATGCATTTGAGGGACAA 58.141 39.130 0.00 0.00 36.65 3.18
2305 2575 4.885907 AGATACATGCATTTGAGGGACAAG 59.114 41.667 0.00 0.00 39.77 3.16
2306 2576 2.880443 ACATGCATTTGAGGGACAAGT 58.120 42.857 0.00 0.00 39.77 3.16
2307 2577 3.233507 ACATGCATTTGAGGGACAAGTT 58.766 40.909 0.00 0.00 39.77 2.66
2308 2578 3.642848 ACATGCATTTGAGGGACAAGTTT 59.357 39.130 0.00 0.00 39.77 2.66
2309 2579 4.101430 ACATGCATTTGAGGGACAAGTTTT 59.899 37.500 0.00 0.00 39.77 2.43
2310 2580 4.751767 TGCATTTGAGGGACAAGTTTTT 57.248 36.364 0.00 0.00 39.77 1.94
2355 2625 4.037222 TGTCCTGTTCCTATCCTGCATAA 58.963 43.478 0.00 0.00 0.00 1.90
2397 2667 2.012673 GATTGTCCCAGTCATGCAGTC 58.987 52.381 0.00 0.00 0.00 3.51
2445 2721 6.071896 TGCCAGATTGGTAGAATCTAGATACG 60.072 42.308 5.46 0.00 40.46 3.06
2448 2724 5.419471 AGATTGGTAGAATCTAGATACGCCC 59.581 44.000 5.46 5.20 35.39 6.13
2460 2736 3.279434 AGATACGCCCCTTTTCATGAAC 58.721 45.455 7.89 0.00 0.00 3.18
2466 2742 4.173256 CGCCCCTTTTCATGAACATTAAC 58.827 43.478 7.89 0.00 0.00 2.01
2476 2753 7.389803 TTCATGAACATTAACCCATGTACTG 57.610 36.000 3.38 0.00 36.30 2.74
2483 2760 1.519408 AACCCATGTACTGTCGCAAC 58.481 50.000 0.00 0.00 0.00 4.17
2489 2766 3.871006 CCATGTACTGTCGCAACACATAT 59.129 43.478 0.00 0.00 0.00 1.78
2531 2816 9.570488 AGATTAAGTCGTGTACTATGTTTTCTC 57.430 33.333 0.00 0.00 37.50 2.87
2600 2885 4.986783 AGACCCTTTTTCCAGTCTTTAGG 58.013 43.478 0.00 0.00 36.16 2.69
2601 2886 4.663592 AGACCCTTTTTCCAGTCTTTAGGA 59.336 41.667 0.00 0.00 36.16 2.94
2602 2887 4.986783 ACCCTTTTTCCAGTCTTTAGGAG 58.013 43.478 0.00 0.00 34.91 3.69
2603 2888 4.415846 ACCCTTTTTCCAGTCTTTAGGAGT 59.584 41.667 0.00 0.00 34.91 3.85
2604 2889 5.609708 ACCCTTTTTCCAGTCTTTAGGAGTA 59.390 40.000 0.00 0.00 34.91 2.59
2605 2890 5.938710 CCCTTTTTCCAGTCTTTAGGAGTAC 59.061 44.000 0.00 0.00 34.91 2.73
2606 2891 6.239915 CCCTTTTTCCAGTCTTTAGGAGTACT 60.240 42.308 0.00 0.00 34.91 2.73
2607 2892 7.038516 CCCTTTTTCCAGTCTTTAGGAGTACTA 60.039 40.741 0.00 0.00 34.91 1.82
2631 2916 1.136305 GTACCTTCCTACTGCGCATGA 59.864 52.381 12.24 2.34 0.00 3.07
2641 2926 6.954944 TCCTACTGCGCATGATTTTATTAAC 58.045 36.000 12.24 0.00 0.00 2.01
2643 2928 4.597079 ACTGCGCATGATTTTATTAACCG 58.403 39.130 12.24 0.00 0.00 4.44
2695 3063 2.625790 TGGAACAACCACATAACAAGGC 59.374 45.455 0.00 0.00 44.64 4.35
2696 3064 2.029380 GGAACAACCACATAACAAGGCC 60.029 50.000 0.00 0.00 38.79 5.19
2708 3076 1.314730 ACAAGGCCGTGTAAAGTTGG 58.685 50.000 23.61 0.00 0.00 3.77
2720 3088 7.361457 GCCGTGTAAAGTTGGTATAGTGAAATT 60.361 37.037 0.00 0.00 0.00 1.82
2721 3089 9.153721 CCGTGTAAAGTTGGTATAGTGAAATTA 57.846 33.333 0.00 0.00 0.00 1.40
2758 3135 2.158370 TGTCTGTTACCACCTCCTGAGA 60.158 50.000 0.00 0.00 0.00 3.27
2768 3145 2.691011 CACCTCCTGAGACTAGGCTTAC 59.309 54.545 0.00 0.00 37.76 2.34
2810 3187 4.531854 TCCAGACAACCAATTTGAGAACA 58.468 39.130 0.00 0.00 38.73 3.18
2860 3238 3.081061 AGAACCGCTTGCACAAATGATA 58.919 40.909 0.00 0.00 0.00 2.15
2865 3243 5.364778 ACCGCTTGCACAAATGATAGTATA 58.635 37.500 0.00 0.00 0.00 1.47
2893 3272 7.430441 TCCAAAATAGCAAGTAAAAAGGTGTC 58.570 34.615 0.00 0.00 0.00 3.67
2915 3294 9.950680 GTGTCTTGACAAAAATAAATCAGAAGA 57.049 29.630 4.93 0.00 0.00 2.87
2946 3325 9.651913 AAATGCTACCCAACAAAAATATACTTG 57.348 29.630 0.00 0.00 0.00 3.16
2948 3327 6.040247 GCTACCCAACAAAAATATACTTGGC 58.960 40.000 0.00 0.00 31.61 4.52
2979 3360 5.233988 AGTTTGCTGTCAAGATCTCAGTAC 58.766 41.667 10.62 7.42 33.12 2.73
2990 3371 8.704234 GTCAAGATCTCAGTACAAACTACAAAG 58.296 37.037 0.00 0.00 33.48 2.77
3036 3418 2.501316 TCTACAATAGCAGCAGCCAGAA 59.499 45.455 0.00 0.00 43.56 3.02
3039 3421 3.094572 ACAATAGCAGCAGCCAGAATTT 58.905 40.909 0.00 0.00 43.56 1.82
3292 3674 3.367703 GGAACCTGCAATTCAACCAGATG 60.368 47.826 11.41 0.00 0.00 2.90
3345 3727 4.262377 GGCATGTGAGCTGACTGTATCTAT 60.262 45.833 4.57 0.00 34.17 1.98
3349 3731 4.342378 TGTGAGCTGACTGTATCTATTCCC 59.658 45.833 4.57 0.00 0.00 3.97
3368 3750 3.208922 TCCCTATCCTACATCCACTCCAA 59.791 47.826 0.00 0.00 0.00 3.53
3412 3794 1.474498 GGCCTATGGTTCCGTTTCGAT 60.474 52.381 0.00 0.00 0.00 3.59
3413 3795 2.285977 GCCTATGGTTCCGTTTCGATT 58.714 47.619 0.00 0.00 0.00 3.34
3414 3796 2.681344 GCCTATGGTTCCGTTTCGATTT 59.319 45.455 0.00 0.00 0.00 2.17
3415 3797 3.128068 GCCTATGGTTCCGTTTCGATTTT 59.872 43.478 0.00 0.00 0.00 1.82
3416 3798 4.380128 GCCTATGGTTCCGTTTCGATTTTT 60.380 41.667 0.00 0.00 0.00 1.94
3470 3887 8.369424 TGGTAGTCTGTTAAACTAACAATAGCA 58.631 33.333 1.79 7.08 46.90 3.49
3494 3911 7.114106 GCATAACTGTGAAAAAGAAAGAGCTTC 59.886 37.037 0.00 0.00 0.00 3.86
3496 3913 4.035675 ACTGTGAAAAAGAAAGAGCTTCCG 59.964 41.667 0.00 0.00 34.21 4.30
3595 4014 0.036164 TTTACGGATGTGCTGGCTGT 59.964 50.000 0.00 0.00 0.00 4.40
3743 4162 2.586648 AGGAACCGATGCCTTTCTTT 57.413 45.000 0.00 0.00 0.00 2.52
3752 4171 4.884164 CCGATGCCTTTCTTTTCCTCTATT 59.116 41.667 0.00 0.00 0.00 1.73
4202 4630 1.390565 GCCTGAAGAATGCAGCTCAT 58.609 50.000 0.00 0.00 41.90 2.90
4279 4707 4.637534 AGTTCCTGTGCAGCAATAATACTG 59.362 41.667 0.00 0.00 36.96 2.74
4280 4708 4.486125 TCCTGTGCAGCAATAATACTGA 57.514 40.909 0.00 0.00 35.90 3.41
4281 4709 5.039920 TCCTGTGCAGCAATAATACTGAT 57.960 39.130 0.00 0.00 35.90 2.90
4282 4710 5.439721 TCCTGTGCAGCAATAATACTGATT 58.560 37.500 0.00 0.00 35.90 2.57
4336 4767 8.774586 GTCAATACAGCCGACATTTATTAGAAT 58.225 33.333 0.00 0.00 0.00 2.40
4413 4844 1.751437 ATCTGATCGTCCACGTCTCA 58.249 50.000 0.00 3.49 40.80 3.27
4431 4862 4.210120 GTCTCAGTCAAAGCACACTACAAG 59.790 45.833 0.00 0.00 0.00 3.16
4453 4884 7.927629 ACAAGTTGTGATGTTGCAAATATTCTT 59.072 29.630 7.96 0.00 0.00 2.52
4466 4897 5.231568 GCAAATATTCTTCATCAACAGCTGC 59.768 40.000 15.27 0.00 0.00 5.25
4474 4905 1.128136 CATCAACAGCTGCGAACTCAG 59.872 52.381 15.27 0.00 37.15 3.35
4522 4953 5.795972 AGATGATATGAGTGAGATGCCTTG 58.204 41.667 0.00 0.00 0.00 3.61
4691 5331 0.533491 TACCTGTACGAAGGCGCATT 59.467 50.000 7.18 7.18 41.46 3.56
4760 5406 3.192844 AGGCTTGAACATCTGCATTTGAG 59.807 43.478 3.26 0.00 0.00 3.02
4962 5608 3.439129 GCACCACATAAGGTACCTGAAAC 59.561 47.826 17.14 0.00 40.77 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
370 476 1.281867 CAGGTGGCATTAACAGGAGGA 59.718 52.381 0.00 0.00 0.00 3.71
555 673 1.800805 AAGCCATCTCTGTGACAACG 58.199 50.000 0.00 0.00 0.00 4.10
562 697 4.455877 CGGACTTTTTAAAGCCATCTCTGT 59.544 41.667 2.23 0.00 39.63 3.41
602 785 5.940470 AGGAGACAAGTTTTATAAGCCACAG 59.060 40.000 0.00 0.00 0.00 3.66
640 823 2.109181 GAAAGGGGGATCCGCGAG 59.891 66.667 21.47 0.00 41.60 5.03
684 870 2.461300 TCCACTATCTGGAGACTGGG 57.539 55.000 0.00 0.00 44.99 4.45
873 1076 2.606587 ATGGAACGGGCCAGCTCTT 61.607 57.895 4.39 0.00 42.15 2.85
889 1092 4.524316 TGAAAGGCAGGAATTTCACATG 57.476 40.909 0.00 0.00 39.76 3.21
911 1114 1.203187 AGGTTCTGTAGCCTCCTGACA 60.203 52.381 0.00 0.00 0.00 3.58
923 1132 4.691216 GCTCGTTTTCTGATAAGGTTCTGT 59.309 41.667 1.59 0.00 0.00 3.41
982 1204 4.159557 CCCATTTCCCTTTCTCCTTTTCA 58.840 43.478 0.00 0.00 0.00 2.69
983 1205 3.055819 GCCCATTTCCCTTTCTCCTTTTC 60.056 47.826 0.00 0.00 0.00 2.29
1074 1296 4.144727 AGGAGGGACGGGAGCGAT 62.145 66.667 0.00 0.00 0.00 4.58
1075 1297 4.816984 GAGGAGGGACGGGAGCGA 62.817 72.222 0.00 0.00 0.00 4.93
1415 1671 5.705441 TCTTTGTATGGTAAAAGTGCAGAGG 59.295 40.000 0.00 0.00 35.38 3.69
1463 1726 4.217118 GGAGCATTGTTTGTTGATCAGAGT 59.783 41.667 0.00 0.00 30.01 3.24
1464 1727 4.216902 TGGAGCATTGTTTGTTGATCAGAG 59.783 41.667 0.00 0.00 30.01 3.35
1467 1730 5.471556 AATGGAGCATTGTTTGTTGATCA 57.528 34.783 0.00 0.00 32.39 2.92
1500 1763 5.968528 ATACAGTATTTCACCCGCAAAAA 57.031 34.783 0.00 0.00 0.00 1.94
1501 1764 5.968528 AATACAGTATTTCACCCGCAAAA 57.031 34.783 0.00 0.00 0.00 2.44
1502 1765 6.174760 AGTAATACAGTATTTCACCCGCAAA 58.825 36.000 11.16 0.00 0.00 3.68
1503 1766 5.736813 AGTAATACAGTATTTCACCCGCAA 58.263 37.500 11.16 0.00 0.00 4.85
1504 1767 5.105269 TGAGTAATACAGTATTTCACCCGCA 60.105 40.000 11.16 1.80 0.00 5.69
1505 1768 5.353938 TGAGTAATACAGTATTTCACCCGC 58.646 41.667 11.16 0.00 0.00 6.13
1506 1769 7.039882 AGTTGAGTAATACAGTATTTCACCCG 58.960 38.462 11.16 0.00 0.00 5.28
1507 1770 7.222224 CGAGTTGAGTAATACAGTATTTCACCC 59.778 40.741 11.16 4.15 0.00 4.61
1508 1771 7.972277 TCGAGTTGAGTAATACAGTATTTCACC 59.028 37.037 11.16 3.27 0.00 4.02
1509 1772 8.906636 TCGAGTTGAGTAATACAGTATTTCAC 57.093 34.615 11.16 4.80 0.00 3.18
1510 1773 9.917129 TTTCGAGTTGAGTAATACAGTATTTCA 57.083 29.630 11.16 7.27 0.00 2.69
1516 1779 9.268268 TGAATTTTTCGAGTTGAGTAATACAGT 57.732 29.630 0.00 0.00 0.00 3.55
1524 1787 8.783093 TGATTGTATGAATTTTTCGAGTTGAGT 58.217 29.630 0.00 0.00 0.00 3.41
1525 1788 9.611284 TTGATTGTATGAATTTTTCGAGTTGAG 57.389 29.630 0.00 0.00 0.00 3.02
1528 1791 9.277565 CGATTGATTGTATGAATTTTTCGAGTT 57.722 29.630 0.00 0.00 0.00 3.01
1529 1792 8.450964 ACGATTGATTGTATGAATTTTTCGAGT 58.549 29.630 0.00 0.00 0.00 4.18
1530 1793 8.826546 ACGATTGATTGTATGAATTTTTCGAG 57.173 30.769 0.00 0.00 0.00 4.04
1531 1794 9.914923 CTACGATTGATTGTATGAATTTTTCGA 57.085 29.630 0.00 0.00 0.00 3.71
1532 1795 9.914923 TCTACGATTGATTGTATGAATTTTTCG 57.085 29.630 0.00 0.00 0.00 3.46
1539 1802 9.653287 AGAACTTTCTACGATTGATTGTATGAA 57.347 29.630 0.00 0.00 35.34 2.57
1540 1803 9.087424 CAGAACTTTCTACGATTGATTGTATGA 57.913 33.333 0.00 0.00 35.34 2.15
1541 1804 8.873830 ACAGAACTTTCTACGATTGATTGTATG 58.126 33.333 0.00 0.00 35.34 2.39
1543 1806 9.569167 CTACAGAACTTTCTACGATTGATTGTA 57.431 33.333 0.00 0.00 35.34 2.41
1544 1807 7.063544 GCTACAGAACTTTCTACGATTGATTGT 59.936 37.037 0.00 0.00 35.34 2.71
1545 1808 7.063426 TGCTACAGAACTTTCTACGATTGATTG 59.937 37.037 0.00 0.00 35.34 2.67
1546 1809 7.097192 TGCTACAGAACTTTCTACGATTGATT 58.903 34.615 0.00 0.00 35.34 2.57
1547 1810 6.631016 TGCTACAGAACTTTCTACGATTGAT 58.369 36.000 0.00 0.00 35.34 2.57
1548 1811 6.020971 TGCTACAGAACTTTCTACGATTGA 57.979 37.500 0.00 0.00 35.34 2.57
1549 1812 6.366332 AGTTGCTACAGAACTTTCTACGATTG 59.634 38.462 0.13 0.00 35.34 2.67
1550 1813 6.456501 AGTTGCTACAGAACTTTCTACGATT 58.543 36.000 0.13 0.00 35.34 3.34
1551 1814 6.026947 AGTTGCTACAGAACTTTCTACGAT 57.973 37.500 0.13 0.00 35.34 3.73
1552 1815 5.449107 AGTTGCTACAGAACTTTCTACGA 57.551 39.130 0.13 0.00 35.34 3.43
1553 1816 6.308282 CCTTAGTTGCTACAGAACTTTCTACG 59.692 42.308 0.13 0.00 35.34 3.51
1554 1817 6.590677 CCCTTAGTTGCTACAGAACTTTCTAC 59.409 42.308 0.13 0.00 35.34 2.59
1555 1818 6.698380 CCCTTAGTTGCTACAGAACTTTCTA 58.302 40.000 0.13 0.00 35.34 2.10
1556 1819 5.552178 CCCTTAGTTGCTACAGAACTTTCT 58.448 41.667 0.13 0.00 38.25 2.52
1557 1820 4.154375 GCCCTTAGTTGCTACAGAACTTTC 59.846 45.833 0.13 0.00 35.30 2.62
1558 1821 4.072839 GCCCTTAGTTGCTACAGAACTTT 58.927 43.478 0.13 0.00 35.30 2.66
1559 1822 3.559384 GGCCCTTAGTTGCTACAGAACTT 60.559 47.826 0.13 0.00 35.30 2.66
1560 1823 2.027100 GGCCCTTAGTTGCTACAGAACT 60.027 50.000 0.13 0.00 37.43 3.01
1561 1824 2.357075 GGCCCTTAGTTGCTACAGAAC 58.643 52.381 0.13 0.00 0.00 3.01
1562 1825 1.280998 GGGCCCTTAGTTGCTACAGAA 59.719 52.381 17.04 0.00 0.00 3.02
1563 1826 0.909623 GGGCCCTTAGTTGCTACAGA 59.090 55.000 17.04 0.00 0.00 3.41
1564 1827 0.912486 AGGGCCCTTAGTTGCTACAG 59.088 55.000 22.28 0.00 0.00 2.74
1565 1828 0.618458 CAGGGCCCTTAGTTGCTACA 59.382 55.000 26.10 0.00 0.00 2.74
1566 1829 0.909623 TCAGGGCCCTTAGTTGCTAC 59.090 55.000 26.10 0.00 0.00 3.58
1567 1830 1.768870 GATCAGGGCCCTTAGTTGCTA 59.231 52.381 26.10 0.00 0.00 3.49
1568 1831 0.548510 GATCAGGGCCCTTAGTTGCT 59.451 55.000 26.10 1.85 0.00 3.91
1569 1832 0.548510 AGATCAGGGCCCTTAGTTGC 59.451 55.000 26.10 8.71 0.00 4.17
1570 1833 4.505742 GGATTAGATCAGGGCCCTTAGTTG 60.506 50.000 26.10 12.39 0.00 3.16
1571 1834 3.653352 GGATTAGATCAGGGCCCTTAGTT 59.347 47.826 26.10 11.42 0.00 2.24
1572 1835 3.252351 GGATTAGATCAGGGCCCTTAGT 58.748 50.000 26.10 11.40 0.00 2.24
1573 1836 3.251484 TGGATTAGATCAGGGCCCTTAG 58.749 50.000 26.10 13.15 0.00 2.18
1574 1837 3.251484 CTGGATTAGATCAGGGCCCTTA 58.749 50.000 26.10 17.02 0.00 2.69
1575 1838 2.061061 CTGGATTAGATCAGGGCCCTT 58.939 52.381 26.10 9.29 0.00 3.95
1576 1839 1.739750 CTGGATTAGATCAGGGCCCT 58.260 55.000 22.28 22.28 0.00 5.19
1577 1840 0.695347 CCTGGATTAGATCAGGGCCC 59.305 60.000 16.46 16.46 44.99 5.80
1592 1855 1.379044 GGGCAGAACCATGACCTGG 60.379 63.158 0.00 0.00 45.80 4.45
1593 1856 4.326255 GGGCAGAACCATGACCTG 57.674 61.111 0.00 0.00 45.80 4.00
1596 1859 3.010420 GTTTAGAGGGCAGAACCATGAC 58.990 50.000 0.00 0.00 42.05 3.06
1597 1860 2.642311 TGTTTAGAGGGCAGAACCATGA 59.358 45.455 0.00 0.00 42.05 3.07
1598 1861 3.071874 TGTTTAGAGGGCAGAACCATG 57.928 47.619 0.00 0.00 42.05 3.66
1599 1862 3.690460 CTTGTTTAGAGGGCAGAACCAT 58.310 45.455 0.00 0.00 42.05 3.55
1600 1863 2.814097 GCTTGTTTAGAGGGCAGAACCA 60.814 50.000 0.00 0.00 42.05 3.67
1601 1864 1.813178 GCTTGTTTAGAGGGCAGAACC 59.187 52.381 0.00 0.00 37.93 3.62
1602 1865 2.504367 TGCTTGTTTAGAGGGCAGAAC 58.496 47.619 0.00 0.00 0.00 3.01
1603 1866 2.949177 TGCTTGTTTAGAGGGCAGAA 57.051 45.000 0.00 0.00 0.00 3.02
1604 1867 2.884639 GTTTGCTTGTTTAGAGGGCAGA 59.115 45.455 0.00 0.00 34.37 4.26
1605 1868 2.887152 AGTTTGCTTGTTTAGAGGGCAG 59.113 45.455 0.00 0.00 34.37 4.85
1606 1869 2.944129 AGTTTGCTTGTTTAGAGGGCA 58.056 42.857 0.00 0.00 0.00 5.36
1607 1870 4.616143 GCTAAGTTTGCTTGTTTAGAGGGC 60.616 45.833 1.79 0.00 36.22 5.19
1608 1871 4.762251 AGCTAAGTTTGCTTGTTTAGAGGG 59.238 41.667 5.96 0.00 37.52 4.30
1609 1872 5.948992 AGCTAAGTTTGCTTGTTTAGAGG 57.051 39.130 5.96 0.00 37.52 3.69
1610 1873 7.018235 GCTTAGCTAAGTTTGCTTGTTTAGAG 58.982 38.462 29.42 4.33 41.46 2.43
1611 1874 6.710744 AGCTTAGCTAAGTTTGCTTGTTTAGA 59.289 34.615 29.42 0.00 41.46 2.10
1612 1875 6.903419 AGCTTAGCTAAGTTTGCTTGTTTAG 58.097 36.000 29.42 5.30 41.46 1.85
1613 1876 6.877611 AGCTTAGCTAAGTTTGCTTGTTTA 57.122 33.333 29.42 0.00 41.46 2.01
1614 1877 5.774498 AGCTTAGCTAAGTTTGCTTGTTT 57.226 34.783 29.42 2.51 41.46 2.83
1615 1878 6.655003 TGATAGCTTAGCTAAGTTTGCTTGTT 59.345 34.615 29.42 12.83 44.62 2.83
1616 1879 6.092807 GTGATAGCTTAGCTAAGTTTGCTTGT 59.907 38.462 29.42 15.66 44.62 3.16
1617 1880 6.314896 AGTGATAGCTTAGCTAAGTTTGCTTG 59.685 38.462 29.42 11.29 44.62 4.01
1618 1881 6.410540 AGTGATAGCTTAGCTAAGTTTGCTT 58.589 36.000 29.42 14.47 44.62 3.91
1619 1882 5.983540 AGTGATAGCTTAGCTAAGTTTGCT 58.016 37.500 29.42 23.72 44.62 3.91
1620 1883 7.254488 GGTTAGTGATAGCTTAGCTAAGTTTGC 60.254 40.741 29.42 18.69 44.62 3.68
1621 1884 7.982354 AGGTTAGTGATAGCTTAGCTAAGTTTG 59.018 37.037 29.42 10.25 44.62 2.93
1622 1885 8.080363 AGGTTAGTGATAGCTTAGCTAAGTTT 57.920 34.615 29.42 21.36 44.62 2.66
1623 1886 7.663043 AGGTTAGTGATAGCTTAGCTAAGTT 57.337 36.000 29.42 26.66 44.62 2.66
1624 1887 7.663043 AAGGTTAGTGATAGCTTAGCTAAGT 57.337 36.000 29.42 19.89 44.62 2.24
1627 1890 9.589461 AGAATAAGGTTAGTGATAGCTTAGCTA 57.411 33.333 16.76 16.76 45.55 3.32
1628 1891 8.364142 CAGAATAAGGTTAGTGATAGCTTAGCT 58.636 37.037 12.67 12.67 43.41 3.32
1629 1892 7.600752 CCAGAATAAGGTTAGTGATAGCTTAGC 59.399 40.741 0.00 0.00 38.52 3.09
1630 1893 7.600752 GCCAGAATAAGGTTAGTGATAGCTTAG 59.399 40.741 0.00 0.00 38.52 2.18
1631 1894 7.290248 AGCCAGAATAAGGTTAGTGATAGCTTA 59.710 37.037 0.00 0.00 39.20 3.09
1632 1895 6.100424 AGCCAGAATAAGGTTAGTGATAGCTT 59.900 38.462 0.00 0.00 37.18 3.74
1633 1896 5.604650 AGCCAGAATAAGGTTAGTGATAGCT 59.395 40.000 0.00 0.00 0.00 3.32
1634 1897 5.859495 AGCCAGAATAAGGTTAGTGATAGC 58.141 41.667 0.00 0.00 0.00 2.97
1635 1898 7.040617 TCGTAGCCAGAATAAGGTTAGTGATAG 60.041 40.741 0.00 0.00 0.00 2.08
1636 1899 6.774170 TCGTAGCCAGAATAAGGTTAGTGATA 59.226 38.462 0.00 0.00 0.00 2.15
1637 1900 5.597182 TCGTAGCCAGAATAAGGTTAGTGAT 59.403 40.000 0.00 0.00 0.00 3.06
1638 1901 4.951715 TCGTAGCCAGAATAAGGTTAGTGA 59.048 41.667 0.00 0.00 0.00 3.41
1639 1902 5.258456 TCGTAGCCAGAATAAGGTTAGTG 57.742 43.478 0.00 0.00 0.00 2.74
1640 1903 6.097839 TCAATCGTAGCCAGAATAAGGTTAGT 59.902 38.462 0.00 0.00 0.00 2.24
1641 1904 6.513180 TCAATCGTAGCCAGAATAAGGTTAG 58.487 40.000 0.00 0.00 0.00 2.34
1642 1905 6.474140 TCAATCGTAGCCAGAATAAGGTTA 57.526 37.500 0.00 0.00 0.00 2.85
1643 1906 5.353394 TCAATCGTAGCCAGAATAAGGTT 57.647 39.130 0.00 0.00 0.00 3.50
1644 1907 5.552870 ATCAATCGTAGCCAGAATAAGGT 57.447 39.130 0.00 0.00 0.00 3.50
1645 1908 7.323420 TCATATCAATCGTAGCCAGAATAAGG 58.677 38.462 0.00 0.00 0.00 2.69
1646 1909 8.031864 ACTCATATCAATCGTAGCCAGAATAAG 58.968 37.037 0.00 0.00 0.00 1.73
1647 1910 7.896811 ACTCATATCAATCGTAGCCAGAATAA 58.103 34.615 0.00 0.00 0.00 1.40
1648 1911 7.468141 ACTCATATCAATCGTAGCCAGAATA 57.532 36.000 0.00 0.00 0.00 1.75
1649 1912 6.352016 ACTCATATCAATCGTAGCCAGAAT 57.648 37.500 0.00 0.00 0.00 2.40
1650 1913 5.791336 ACTCATATCAATCGTAGCCAGAA 57.209 39.130 0.00 0.00 0.00 3.02
1651 1914 6.894339 TTACTCATATCAATCGTAGCCAGA 57.106 37.500 0.00 0.00 0.00 3.86
1652 1915 9.639601 TTTATTACTCATATCAATCGTAGCCAG 57.360 33.333 0.00 0.00 0.00 4.85
1653 1916 9.990360 TTTTATTACTCATATCAATCGTAGCCA 57.010 29.630 0.00 0.00 0.00 4.75
1663 1926 9.625747 TGGAGCATTGTTTTATTACTCATATCA 57.374 29.630 0.00 0.00 0.00 2.15
1668 1931 9.638239 GAAAATGGAGCATTGTTTTATTACTCA 57.362 29.630 0.00 0.00 34.04 3.41
1669 1932 9.638239 TGAAAATGGAGCATTGTTTTATTACTC 57.362 29.630 0.00 0.00 34.04 2.59
1681 1944 8.806146 ACTAACTTACAATGAAAATGGAGCATT 58.194 29.630 0.00 0.00 35.39 3.56
1682 1945 8.353423 ACTAACTTACAATGAAAATGGAGCAT 57.647 30.769 0.00 0.00 0.00 3.79
1683 1946 7.759489 ACTAACTTACAATGAAAATGGAGCA 57.241 32.000 0.00 0.00 0.00 4.26
1697 1960 9.263538 ACGAATTGATGTGTAAACTAACTTACA 57.736 29.630 0.00 0.00 39.02 2.41
1698 1961 9.737025 GACGAATTGATGTGTAAACTAACTTAC 57.263 33.333 0.00 0.00 33.22 2.34
1699 1962 9.478768 TGACGAATTGATGTGTAAACTAACTTA 57.521 29.630 0.00 0.00 0.00 2.24
1700 1963 8.373048 TGACGAATTGATGTGTAAACTAACTT 57.627 30.769 0.00 0.00 0.00 2.66
1701 1964 7.656137 ACTGACGAATTGATGTGTAAACTAACT 59.344 33.333 0.00 0.00 0.00 2.24
1702 1965 7.740346 CACTGACGAATTGATGTGTAAACTAAC 59.260 37.037 0.00 0.00 0.00 2.34
1703 1966 7.439955 ACACTGACGAATTGATGTGTAAACTAA 59.560 33.333 0.00 0.00 36.96 2.24
1704 1967 6.926826 ACACTGACGAATTGATGTGTAAACTA 59.073 34.615 0.00 0.00 36.96 2.24
1705 1968 5.758296 ACACTGACGAATTGATGTGTAAACT 59.242 36.000 0.00 0.00 36.96 2.66
1706 1969 5.845953 CACACTGACGAATTGATGTGTAAAC 59.154 40.000 0.00 0.00 36.96 2.01
1745 2008 7.976826 TGTTCAAATACGGTTCAATACATACC 58.023 34.615 0.00 0.00 0.00 2.73
1753 2016 7.442969 AGTTAGACATGTTCAAATACGGTTCAA 59.557 33.333 0.00 0.00 0.00 2.69
1763 2026 6.001460 CCCAGGTTAGTTAGACATGTTCAAA 58.999 40.000 0.00 0.00 0.00 2.69
1817 2080 4.732065 ACTAGGATAGGAGTAGGACTTGC 58.268 47.826 0.00 0.00 44.97 4.01
1867 2135 3.202906 CAAAGGAGGACTCAACGTTTGA 58.797 45.455 0.00 0.00 39.85 2.69
1987 2257 7.601705 TTTTCTCCTTTGAAATGTGAAGGAT 57.398 32.000 4.68 0.00 45.67 3.24
2038 2308 9.865152 TGTCATTTGATTCATAGGAATGGAATA 57.135 29.630 7.46 0.00 43.69 1.75
2069 2339 4.081642 ACGGCTCTCAGTTCTATAGCAAAA 60.082 41.667 0.00 0.00 34.85 2.44
2089 2359 6.940739 AGGAATATCATAGGAAATGAGACGG 58.059 40.000 0.00 0.00 0.00 4.79
2090 2360 8.839310 AAAGGAATATCATAGGAAATGAGACG 57.161 34.615 0.00 0.00 0.00 4.18
2091 2361 9.225436 GGAAAGGAATATCATAGGAAATGAGAC 57.775 37.037 0.00 0.00 0.00 3.36
2092 2362 9.175577 AGGAAAGGAATATCATAGGAAATGAGA 57.824 33.333 0.00 0.00 0.00 3.27
2114 2384 2.025321 GGCCTCCTTTGGTTCATAGGAA 60.025 50.000 0.00 0.00 40.12 3.36
2138 2408 3.513515 TCCAGAAGTTTTTGCAAACCAGT 59.486 39.130 12.39 1.54 43.08 4.00
2159 2429 8.025445 TCTTGATTCTTGCTTTTCTAATTGCTC 58.975 33.333 0.00 0.00 0.00 4.26
2179 2449 8.788238 ATAAAAGGGATGCCTATTTTCTTGAT 57.212 30.769 6.05 0.00 0.00 2.57
2205 2475 0.754217 CCGGACGGAGGGAGTATCAA 60.754 60.000 4.40 0.00 34.77 2.57
2210 2480 1.123246 TTTTTCCGGACGGAGGGAGT 61.123 55.000 13.64 0.00 46.06 3.85
2211 2481 0.672711 GTTTTTCCGGACGGAGGGAG 60.673 60.000 13.64 0.00 46.06 4.30
2212 2482 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
2213 2483 0.250597 AAGTTTTTCCGGACGGAGGG 60.251 55.000 13.64 0.00 46.06 4.30
2214 2484 0.872388 CAAGTTTTTCCGGACGGAGG 59.128 55.000 13.64 0.00 46.06 4.30
2215 2485 1.529865 GACAAGTTTTTCCGGACGGAG 59.470 52.381 13.64 3.15 46.06 4.63
2216 2486 1.585297 GACAAGTTTTTCCGGACGGA 58.415 50.000 1.83 9.76 43.52 4.69
2217 2487 0.589708 GGACAAGTTTTTCCGGACGG 59.410 55.000 1.83 3.96 0.00 4.79
2218 2488 0.589708 GGGACAAGTTTTTCCGGACG 59.410 55.000 1.83 0.00 32.00 4.79
2219 2489 1.682740 TGGGACAAGTTTTTCCGGAC 58.317 50.000 1.83 0.00 31.92 4.79
2226 2496 9.359853 TTGAGAAACAAGCTTGGGACAAGTTTT 62.360 37.037 29.18 17.36 37.48 2.43
2227 2497 7.976078 TTGAGAAACAAGCTTGGGACAAGTTT 61.976 38.462 29.18 18.04 37.48 2.66
2228 2498 6.561626 TTGAGAAACAAGCTTGGGACAAGTT 61.562 40.000 29.18 10.62 37.48 2.66
2229 2499 5.112668 TTGAGAAACAAGCTTGGGACAAGT 61.113 41.667 29.18 4.47 37.48 3.16
2230 2500 3.381272 TTGAGAAACAAGCTTGGGACAAG 59.619 43.478 29.18 3.71 37.48 3.16
2231 2501 3.360867 TTGAGAAACAAGCTTGGGACAA 58.639 40.909 29.18 21.59 37.48 3.18
2232 2502 2.727123 TGAGAAACAAGCTTGGGACA 57.273 45.000 29.18 17.71 0.00 4.02
2233 2503 4.301628 CATTTGAGAAACAAGCTTGGGAC 58.698 43.478 29.18 18.46 39.77 4.46
2234 2504 3.321682 CCATTTGAGAAACAAGCTTGGGA 59.678 43.478 29.18 7.03 39.77 4.37
2235 2505 3.321682 TCCATTTGAGAAACAAGCTTGGG 59.678 43.478 29.18 16.37 39.77 4.12
2236 2506 4.589216 TCCATTTGAGAAACAAGCTTGG 57.411 40.909 29.18 12.28 39.77 3.61
2237 2507 5.535333 ACATCCATTTGAGAAACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
2238 2508 5.796424 ACATCCATTTGAGAAACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
2239 2509 6.888632 AGATACATCCATTTGAGAAACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
2240 2510 7.093322 AGATACATCCATTTGAGAAACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
2241 2511 8.341173 GCTAGATACATCCATTTGAGAAACAAG 58.659 37.037 0.00 0.00 39.77 3.16
2242 2512 7.828717 TGCTAGATACATCCATTTGAGAAACAA 59.171 33.333 0.00 0.00 36.65 2.83
2243 2513 7.280876 GTGCTAGATACATCCATTTGAGAAACA 59.719 37.037 0.00 0.00 0.00 2.83
2244 2514 7.497249 AGTGCTAGATACATCCATTTGAGAAAC 59.503 37.037 0.00 0.00 0.00 2.78
2245 2515 7.568349 AGTGCTAGATACATCCATTTGAGAAA 58.432 34.615 0.00 0.00 0.00 2.52
2246 2516 7.129457 AGTGCTAGATACATCCATTTGAGAA 57.871 36.000 0.00 0.00 0.00 2.87
2247 2517 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
2248 2518 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
2249 2519 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2250 2520 8.668510 AAGTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
2251 2521 9.113838 CAAAGTTAGTGCTAGATACATCCATTT 57.886 33.333 0.00 0.00 0.00 2.32
2252 2522 8.267894 ACAAAGTTAGTGCTAGATACATCCATT 58.732 33.333 0.00 0.00 0.00 3.16
2253 2523 7.712639 CACAAAGTTAGTGCTAGATACATCCAT 59.287 37.037 0.00 0.00 0.00 3.41
2254 2524 7.041721 CACAAAGTTAGTGCTAGATACATCCA 58.958 38.462 0.00 0.00 0.00 3.41
2255 2525 7.470289 CACAAAGTTAGTGCTAGATACATCC 57.530 40.000 0.00 0.00 0.00 3.51
2267 2537 6.313658 TGCATGTATCTAGCACAAAGTTAGTG 59.686 38.462 0.00 0.00 39.92 2.74
2268 2538 6.406370 TGCATGTATCTAGCACAAAGTTAGT 58.594 36.000 0.00 0.00 33.25 2.24
2269 2539 6.908870 TGCATGTATCTAGCACAAAGTTAG 57.091 37.500 0.00 0.00 32.55 2.34
2270 2540 7.864108 AATGCATGTATCTAGCACAAAGTTA 57.136 32.000 0.00 0.00 41.60 2.24
2271 2541 6.764308 AATGCATGTATCTAGCACAAAGTT 57.236 33.333 0.00 0.00 41.60 2.66
2272 2542 6.375174 TCAAATGCATGTATCTAGCACAAAGT 59.625 34.615 0.00 0.00 41.60 2.66
2273 2543 6.788243 TCAAATGCATGTATCTAGCACAAAG 58.212 36.000 0.00 0.36 41.60 2.77
2274 2544 6.183360 CCTCAAATGCATGTATCTAGCACAAA 60.183 38.462 0.00 0.00 41.60 2.83
2275 2545 5.297527 CCTCAAATGCATGTATCTAGCACAA 59.702 40.000 0.00 0.00 41.60 3.33
2276 2546 4.818005 CCTCAAATGCATGTATCTAGCACA 59.182 41.667 0.00 0.22 41.60 4.57
2277 2547 4.214971 CCCTCAAATGCATGTATCTAGCAC 59.785 45.833 0.00 0.00 41.60 4.40
2278 2548 4.102996 TCCCTCAAATGCATGTATCTAGCA 59.897 41.667 0.00 0.00 43.14 3.49
2279 2549 4.453819 GTCCCTCAAATGCATGTATCTAGC 59.546 45.833 0.00 0.00 0.00 3.42
2280 2550 5.614308 TGTCCCTCAAATGCATGTATCTAG 58.386 41.667 0.00 0.00 0.00 2.43
2281 2551 5.628797 TGTCCCTCAAATGCATGTATCTA 57.371 39.130 0.00 0.00 0.00 1.98
2282 2552 4.508551 TGTCCCTCAAATGCATGTATCT 57.491 40.909 0.00 0.00 0.00 1.98
2283 2553 4.641989 ACTTGTCCCTCAAATGCATGTATC 59.358 41.667 0.00 0.00 35.48 2.24
2284 2554 4.603131 ACTTGTCCCTCAAATGCATGTAT 58.397 39.130 0.00 0.00 35.48 2.29
2285 2555 4.032960 ACTTGTCCCTCAAATGCATGTA 57.967 40.909 0.00 0.00 35.48 2.29
2286 2556 2.880443 ACTTGTCCCTCAAATGCATGT 58.120 42.857 0.00 0.00 35.48 3.21
2287 2557 3.947910 AACTTGTCCCTCAAATGCATG 57.052 42.857 0.00 0.00 35.48 4.06
2288 2558 4.961438 AAAACTTGTCCCTCAAATGCAT 57.039 36.364 0.00 0.00 35.48 3.96
2289 2559 4.751767 AAAAACTTGTCCCTCAAATGCA 57.248 36.364 0.00 0.00 35.48 3.96
2307 2577 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
2308 2578 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2309 2579 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
2310 2580 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
2311 2581 0.679002 CTTGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
2312 2582 0.964358 ACTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
2313 2583 1.264295 AACTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2314 2584 2.036862 ACAAACTTGTACTCCCTCCGTC 59.963 50.000 0.00 0.00 40.16 4.79
2315 2585 2.036862 GACAAACTTGTACTCCCTCCGT 59.963 50.000 0.00 0.00 42.43 4.69
2316 2586 2.612221 GGACAAACTTGTACTCCCTCCG 60.612 54.545 0.00 0.00 42.43 4.63
2317 2587 3.055209 GGACAAACTTGTACTCCCTCC 57.945 52.381 0.00 0.00 42.43 4.30
2355 2625 1.755959 TGTGAGCCAAGTTGCAATTGT 59.244 42.857 0.59 0.00 0.00 2.71
2397 2667 6.129009 GCAGTCATGTTTCAATAACAAAGCAG 60.129 38.462 0.00 0.00 33.42 4.24
2445 2721 4.503910 GGTTAATGTTCATGAAAAGGGGC 58.496 43.478 10.35 0.00 0.00 5.80
2448 2724 6.700352 ACATGGGTTAATGTTCATGAAAAGG 58.300 36.000 10.35 0.00 37.50 3.11
2460 2736 3.266636 TGCGACAGTACATGGGTTAATG 58.733 45.455 0.00 0.00 0.00 1.90
2466 2742 0.796312 GTGTTGCGACAGTACATGGG 59.204 55.000 7.14 0.00 36.20 4.00
2476 2753 2.201732 ACCATCGATATGTGTTGCGAC 58.798 47.619 0.00 0.00 35.44 5.19
2483 2760 5.351189 TCTTGTGAACAACCATCGATATGTG 59.649 40.000 0.00 0.00 0.00 3.21
2489 2766 5.995282 ACTTAATCTTGTGAACAACCATCGA 59.005 36.000 0.00 0.00 0.00 3.59
2541 2826 2.815503 CAATCTGGCAGTCATGTTGTCA 59.184 45.455 15.27 6.99 0.00 3.58
2564 2849 7.705752 GGAAAAAGGGTCTAAATACTAGAGACG 59.294 40.741 0.00 0.00 40.46 4.18
2603 2888 5.413833 GCGCAGTAGGAAGGTACATATAGTA 59.586 44.000 0.30 0.00 0.00 1.82
2604 2889 4.217983 GCGCAGTAGGAAGGTACATATAGT 59.782 45.833 0.30 0.00 0.00 2.12
2605 2890 4.217767 TGCGCAGTAGGAAGGTACATATAG 59.782 45.833 5.66 0.00 0.00 1.31
2606 2891 4.146564 TGCGCAGTAGGAAGGTACATATA 58.853 43.478 5.66 0.00 0.00 0.86
2607 2892 2.963101 TGCGCAGTAGGAAGGTACATAT 59.037 45.455 5.66 0.00 0.00 1.78
2641 2926 9.729281 ATGTGGGTATATTACTTTATTAACCGG 57.271 33.333 0.00 0.00 0.00 5.28
2655 2942 6.894654 TGTTCCAAATGTCATGTGGGTATATT 59.105 34.615 20.16 0.00 32.95 1.28
2659 2946 4.105754 TGTTCCAAATGTCATGTGGGTA 57.894 40.909 20.16 7.73 32.95 3.69
2660 2947 2.956132 TGTTCCAAATGTCATGTGGGT 58.044 42.857 20.16 0.00 32.95 4.51
2663 2950 4.319139 TGGTTGTTCCAAATGTCATGTG 57.681 40.909 0.00 0.00 44.12 3.21
2674 2961 2.625790 GCCTTGTTATGTGGTTGTTCCA 59.374 45.455 0.00 0.00 45.01 3.53
2695 3063 7.605410 ATTTCACTATACCAACTTTACACGG 57.395 36.000 0.00 0.00 0.00 4.94
2758 3135 3.393278 TGTGGTTTTGGAGTAAGCCTAGT 59.607 43.478 0.00 0.00 0.00 2.57
2768 3145 4.126437 GGAATTTGGTTGTGGTTTTGGAG 58.874 43.478 0.00 0.00 0.00 3.86
2865 3243 9.271828 CACCTTTTTACTTGCTATTTTGGATTT 57.728 29.630 0.00 0.00 0.00 2.17
2939 3318 7.014808 ACAGCAAACTTAAAAAGGCCAAGTATA 59.985 33.333 5.01 0.00 32.35 1.47
2940 3319 6.183360 ACAGCAAACTTAAAAAGGCCAAGTAT 60.183 34.615 5.01 0.00 32.35 2.12
2941 3320 5.128008 ACAGCAAACTTAAAAAGGCCAAGTA 59.872 36.000 5.01 0.00 32.35 2.24
2942 3321 4.081142 ACAGCAAACTTAAAAAGGCCAAGT 60.081 37.500 5.01 1.82 34.03 3.16
2943 3322 4.441792 ACAGCAAACTTAAAAAGGCCAAG 58.558 39.130 5.01 1.03 0.00 3.61
2944 3323 4.081420 TGACAGCAAACTTAAAAAGGCCAA 60.081 37.500 5.01 0.00 0.00 4.52
2946 3325 4.053469 TGACAGCAAACTTAAAAAGGCC 57.947 40.909 0.00 0.00 0.00 5.19
2948 3327 7.428826 AGATCTTGACAGCAAACTTAAAAAGG 58.571 34.615 0.00 0.00 32.73 3.11
3067 3449 4.035091 TGTCGGCAATACATAAACAGATGC 59.965 41.667 0.00 0.00 0.00 3.91
3068 3450 5.501715 GTGTCGGCAATACATAAACAGATG 58.498 41.667 0.00 0.00 0.00 2.90
3132 3514 4.553330 TCACCTAATGAACCTGTCCTTC 57.447 45.455 0.00 0.00 33.02 3.46
3178 3560 7.707624 TCCATATTTCTCAAGCTTCACATTT 57.292 32.000 0.00 0.00 0.00 2.32
3182 3564 6.995091 ACCTATCCATATTTCTCAAGCTTCAC 59.005 38.462 0.00 0.00 0.00 3.18
3253 3635 6.543831 GCAGGTTCCAGATTAATCAACAGTAT 59.456 38.462 17.56 0.00 0.00 2.12
3345 3727 3.208922 TGGAGTGGATGTAGGATAGGGAA 59.791 47.826 0.00 0.00 0.00 3.97
3349 3731 5.815233 ATGTTGGAGTGGATGTAGGATAG 57.185 43.478 0.00 0.00 0.00 2.08
3368 3750 5.532406 CAGTATATAGGGCAGCACAAAATGT 59.468 40.000 0.00 0.00 0.00 2.71
3416 3798 7.398829 TGTAAGATGGCATAGACCAGTAAAAA 58.601 34.615 0.00 0.00 44.71 1.94
3417 3799 6.953101 TGTAAGATGGCATAGACCAGTAAAA 58.047 36.000 0.00 0.00 44.71 1.52
3418 3800 6.553953 TGTAAGATGGCATAGACCAGTAAA 57.446 37.500 0.00 0.00 44.71 2.01
3420 3802 7.093333 CCATATGTAAGATGGCATAGACCAGTA 60.093 40.741 0.00 0.00 44.71 2.74
3421 3803 6.296087 CCATATGTAAGATGGCATAGACCAGT 60.296 42.308 0.00 0.00 44.71 4.00
3422 3804 6.111382 CCATATGTAAGATGGCATAGACCAG 58.889 44.000 0.00 0.00 44.71 4.00
3470 3887 7.520614 CGGAAGCTCTTTCTTTTTCACAGTTAT 60.521 37.037 0.00 0.00 36.03 1.89
3484 3901 5.803020 ATTTATCACACGGAAGCTCTTTC 57.197 39.130 0.00 0.00 34.93 2.62
3494 3911 9.787532 ATAGTCAAATGAAAATTTATCACACGG 57.212 29.630 0.00 0.00 0.00 4.94
3595 4014 2.447429 TGATTTGTACAAGGGGGTTCCA 59.553 45.455 8.56 0.00 38.24 3.53
4202 4630 0.827368 GGGCACAAAGGGAAACAACA 59.173 50.000 0.00 0.00 0.00 3.33
4279 4707 5.511729 GCCAAACAGACTATTAACGCAAATC 59.488 40.000 0.00 0.00 0.00 2.17
4280 4708 5.048364 TGCCAAACAGACTATTAACGCAAAT 60.048 36.000 0.00 0.00 0.00 2.32
4281 4709 4.276183 TGCCAAACAGACTATTAACGCAAA 59.724 37.500 0.00 0.00 0.00 3.68
4282 4710 3.815962 TGCCAAACAGACTATTAACGCAA 59.184 39.130 0.00 0.00 0.00 4.85
4315 4746 7.766738 TGTCAATTCTAATAAATGTCGGCTGTA 59.233 33.333 0.00 0.00 0.00 2.74
4318 4749 7.336931 ACTTGTCAATTCTAATAAATGTCGGCT 59.663 33.333 0.00 0.00 0.00 5.52
4413 4844 4.094887 CACAACTTGTAGTGTGCTTTGACT 59.905 41.667 0.00 0.00 0.00 3.41
4431 4862 7.872163 TGAAGAATATTTGCAACATCACAAC 57.128 32.000 0.00 0.00 0.00 3.32
4453 4884 1.270252 TGAGTTCGCAGCTGTTGATGA 60.270 47.619 16.64 3.23 0.00 2.92
4477 4908 1.933181 CGTGAAGACAAGAGCACAACA 59.067 47.619 0.00 0.00 0.00 3.33
4522 4953 0.321034 TATCATCAGGCCGCATGCTC 60.321 55.000 17.13 7.20 40.92 4.26
4530 4961 4.924305 TTTGCTTTCATATCATCAGGCC 57.076 40.909 0.00 0.00 0.00 5.19
4776 5422 9.692325 AAATTCTTAGATTTGATCTAACCAGCT 57.308 29.630 6.35 0.00 44.56 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.