Multiple sequence alignment - TraesCS1D01G250900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G250900 chr1D 100.000 9420 0 0 1 9420 343186850 343177431 0.000000e+00 17396
1 TraesCS1D01G250900 chr1B 94.330 5256 191 53 4207 9420 460278068 460272878 0.000000e+00 7956
2 TraesCS1D01G250900 chr1B 91.522 3916 165 49 16 3838 460281899 460278058 0.000000e+00 5238
3 TraesCS1D01G250900 chr1B 84.419 353 55 0 3853 4205 180526413 180526061 1.950000e-91 348
4 TraesCS1D01G250900 chr1A 94.184 5124 173 44 4336 9420 442805024 442799987 0.000000e+00 7696
5 TraesCS1D01G250900 chr1A 92.839 2011 97 26 1855 3838 442807105 442805115 0.000000e+00 2872
6 TraesCS1D01G250900 chr1A 93.872 1893 84 13 4 1868 442809007 442807119 0.000000e+00 2824
7 TraesCS1D01G250900 chr1A 92.241 116 7 1 4207 4320 442805125 442805010 7.570000e-36 163
8 TraesCS1D01G250900 chr7A 89.630 540 31 10 8493 9028 280227047 280226529 0.000000e+00 664
9 TraesCS1D01G250900 chr5D 97.175 354 9 1 3853 4206 409567150 409566798 1.750000e-166 597
10 TraesCS1D01G250900 chr3B 91.808 354 29 0 3853 4206 222264931 222264578 2.360000e-135 494
11 TraesCS1D01G250900 chr2A 90.756 357 33 0 3853 4209 719694060 719694416 2.380000e-130 477
12 TraesCS1D01G250900 chr2B 89.548 354 37 0 3853 4206 208289000 208288647 5.190000e-122 449
13 TraesCS1D01G250900 chr7B 89.227 362 34 3 3853 4212 187209813 187210171 1.870000e-121 448
14 TraesCS1D01G250900 chr4B 88.430 363 34 2 3853 4207 168997202 168996840 1.880000e-116 431
15 TraesCS1D01G250900 chr6A 86.119 353 48 1 3856 4208 555821098 555820747 6.900000e-101 379
16 TraesCS1D01G250900 chr2D 84.483 348 51 3 3859 4205 434695429 434695774 3.260000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G250900 chr1D 343177431 343186850 9419 True 17396.00 17396 100.000 1 9420 1 chr1D.!!$R1 9419
1 TraesCS1D01G250900 chr1B 460272878 460281899 9021 True 6597.00 7956 92.926 16 9420 2 chr1B.!!$R2 9404
2 TraesCS1D01G250900 chr1A 442799987 442809007 9020 True 3388.75 7696 93.284 4 9420 4 chr1A.!!$R1 9416
3 TraesCS1D01G250900 chr7A 280226529 280227047 518 True 664.00 664 89.630 8493 9028 1 chr7A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.753111 GGTCATTGTGGGAGGCCATC 60.753 60.000 5.01 0.00 0.00 3.51 F
1754 1788 0.395312 ACGGTTGGATCTGGTCGTTT 59.605 50.000 0.00 0.00 0.00 3.60 F
2954 3054 0.391130 TTTCCGAGATTGACTGGCCG 60.391 55.000 0.00 0.00 0.00 6.13 F
3835 3968 0.108138 CGTTAGTCTTCAGGCAGGGG 60.108 60.000 0.00 0.00 0.00 4.79 F
4377 4514 0.026674 CGTTGCCACTGTCGCATATG 59.973 55.000 0.00 0.00 35.83 1.78 F
4378 4515 0.248215 GTTGCCACTGTCGCATATGC 60.248 55.000 18.08 18.08 35.83 3.14 F
4705 4846 0.252197 AACGTATTGGTCCCTGCTCC 59.748 55.000 0.00 0.00 0.00 4.70 F
5440 5591 1.064166 CATGCTTGGAACCCCTCTGAT 60.064 52.381 0.00 0.00 0.00 2.90 F
5872 6023 1.284785 CAGGCTGGTAGAAATGGGGAA 59.715 52.381 6.61 0.00 0.00 3.97 F
7701 7867 0.318441 TCCTGCTGTCTGAAACCTCG 59.682 55.000 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1866 0.837940 GGAAGCCTAATTCGGACCCT 59.162 55.000 0.00 0.00 0.00 4.34 R
3569 3689 0.457851 GATCTGGGTCCAGTCGAGTG 59.542 60.000 13.55 13.55 43.96 3.51 R
3846 3979 0.035317 TGTCTCCAGCAGCATTTCGT 59.965 50.000 0.00 0.00 0.00 3.85 R
4705 4846 1.153168 CATAAGTGTGGGGGCGAGG 60.153 63.158 0.00 0.00 0.00 4.63 R
5929 6080 0.968405 TGCCCAAATGCTCCAACTTC 59.032 50.000 0.00 0.00 0.00 3.01 R
6179 6333 5.479724 AGTTGTTAGGACCTAGAACCTGTAC 59.520 44.000 16.51 12.94 37.68 2.90 R
6530 6686 1.611673 GCAAGGCTAGCAGGTTGAGAA 60.612 52.381 18.24 0.00 0.00 2.87 R
6998 7154 1.580845 GCAGATGCGATACCCATGCC 61.581 60.000 0.00 0.00 0.00 4.40 R
7865 8038 0.040514 TGCAATGCGTTCTTCGGTTG 60.041 50.000 0.00 0.00 40.26 3.77 R
8561 8743 0.266152 ATACACAGGGAGGGAGGGAG 59.734 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.281182 ACTGAACTCTTAGACGTGGTCATT 59.719 41.667 0.00 0.00 34.60 2.57
34 35 4.038763 TGAACTCTTAGACGTGGTCATTGT 59.961 41.667 0.00 0.00 34.60 2.71
45 46 0.753111 GGTCATTGTGGGAGGCCATC 60.753 60.000 5.01 0.00 0.00 3.51
56 57 1.876156 GGAGGCCATCTATTTTCGCAG 59.124 52.381 5.01 0.00 0.00 5.18
62 63 3.925913 GCCATCTATTTTCGCAGCAAAAA 59.074 39.130 0.00 0.00 0.00 1.94
64 65 5.401550 CCATCTATTTTCGCAGCAAAAAGA 58.598 37.500 0.00 7.15 0.00 2.52
74 75 3.305335 CGCAGCAAAAAGACAAACCCTAT 60.305 43.478 0.00 0.00 0.00 2.57
75 76 3.989817 GCAGCAAAAAGACAAACCCTATG 59.010 43.478 0.00 0.00 0.00 2.23
82 83 7.359181 GCAAAAAGACAAACCCTATGAAAATCG 60.359 37.037 0.00 0.00 0.00 3.34
162 164 4.528206 ACCCCATCTTCAAATCTCAAAACC 59.472 41.667 0.00 0.00 0.00 3.27
174 176 2.875933 TCTCAAAACCGCGTGATTTTCT 59.124 40.909 4.92 0.00 0.00 2.52
204 206 5.351189 GGGTAAGCATGCAAATACCTTTTTG 59.649 40.000 30.14 0.00 38.28 2.44
319 321 5.159209 CCTATCCTTACGCGGTTATTACAG 58.841 45.833 12.47 0.00 0.00 2.74
498 500 1.227556 CGATAAGGCCCAAGGACCG 60.228 63.158 0.00 0.00 0.00 4.79
501 503 3.876255 TAAGGCCCAAGGACCGGGT 62.876 63.158 6.32 0.00 46.40 5.28
686 699 2.552155 CCTTAACTAACTGCTGCCACCA 60.552 50.000 0.00 0.00 0.00 4.17
720 733 2.337532 CCCGTACCCGCTAATCCG 59.662 66.667 0.00 0.00 0.00 4.18
834 848 1.078143 AGAAGCGCTCCCCACAATC 60.078 57.895 12.06 0.89 0.00 2.67
874 888 4.353437 GGGCGTCCGTCGAACACT 62.353 66.667 0.00 0.00 42.86 3.55
970 984 1.610554 ATAGCCGGTGGTTAGTGCGT 61.611 55.000 1.90 0.00 0.00 5.24
971 985 1.818959 TAGCCGGTGGTTAGTGCGTT 61.819 55.000 1.90 0.00 0.00 4.84
1662 1696 3.053917 CCCTTAAGATTTCCCTTTCCGGA 60.054 47.826 0.00 0.00 33.16 5.14
1724 1758 1.303282 GATCTCCCGTTTTGGCCCT 59.697 57.895 0.00 0.00 35.87 5.19
1754 1788 0.395312 ACGGTTGGATCTGGTCGTTT 59.605 50.000 0.00 0.00 0.00 3.60
1755 1789 1.076332 CGGTTGGATCTGGTCGTTTC 58.924 55.000 0.00 0.00 0.00 2.78
1756 1790 1.606994 CGGTTGGATCTGGTCGTTTCA 60.607 52.381 0.00 0.00 0.00 2.69
1757 1791 1.804748 GGTTGGATCTGGTCGTTTCAC 59.195 52.381 0.00 0.00 0.00 3.18
1758 1792 1.804748 GTTGGATCTGGTCGTTTCACC 59.195 52.381 0.00 0.00 36.90 4.02
2176 2242 4.724602 GCTCTCTGTCCGTGCGCA 62.725 66.667 5.66 5.66 0.00 6.09
2187 2253 2.655001 GTCCGTGCGCAAACTTTATTTC 59.345 45.455 14.00 0.00 0.00 2.17
2589 2678 3.009473 AGGTGAATCTGGTTAGCATGTGT 59.991 43.478 0.00 0.00 0.00 3.72
2658 2748 0.532115 CCTTCGCCCCTTTTGAATGG 59.468 55.000 0.00 0.00 0.00 3.16
2708 2798 2.037772 TGAACCTCTCTGCTTTGGAGTC 59.962 50.000 0.00 0.00 33.06 3.36
2734 2824 4.722361 TTAACTTTCGGGCTGTGTTTTT 57.278 36.364 0.00 0.00 0.00 1.94
2873 2973 9.607285 TCTTATACGCAAGAAAAGAAAATCAAC 57.393 29.630 0.00 0.00 43.62 3.18
2938 3038 8.131100 TGAGTTTTGATTTGTCATCTCTGTTTC 58.869 33.333 0.00 0.00 0.00 2.78
2951 3051 3.056536 TCTCTGTTTCCGAGATTGACTGG 60.057 47.826 0.00 0.00 32.86 4.00
2954 3054 0.391130 TTTCCGAGATTGACTGGCCG 60.391 55.000 0.00 0.00 0.00 6.13
2969 3069 1.361993 GCCGTGGTTGCATTTGTCA 59.638 52.632 0.00 0.00 0.00 3.58
3078 3180 7.625469 TGTCATGATACAACATGTAGGGTTAA 58.375 34.615 0.00 0.00 45.21 2.01
3120 3225 3.746045 TCAGGTTAGTTCACTGTCACC 57.254 47.619 0.00 0.00 34.02 4.02
3168 3274 4.529897 AGAGCATAGAACCAAATCATGCA 58.470 39.130 7.51 0.00 43.46 3.96
3569 3689 2.355837 TGCACGTGTCGAAGAGCC 60.356 61.111 18.38 0.00 36.95 4.70
3622 3747 4.841617 AGATCTCCGGCCGAGGCA 62.842 66.667 30.73 7.72 44.11 4.75
3735 3860 0.614812 GCCCAATCAACCAGGCATTT 59.385 50.000 0.00 0.00 45.07 2.32
3777 3903 0.520404 TCTTCTCGAAAGACCGTCCG 59.480 55.000 6.10 0.00 35.39 4.79
3785 3911 1.797046 GAAAGACCGTCCGGAGAAAAC 59.203 52.381 13.54 0.00 38.96 2.43
3828 3961 1.135660 TGCTCTCGCGTTAGTCTTCAG 60.136 52.381 5.77 0.00 39.65 3.02
3829 3962 1.795889 GCTCTCGCGTTAGTCTTCAGG 60.796 57.143 5.77 0.00 0.00 3.86
3830 3963 0.170561 TCTCGCGTTAGTCTTCAGGC 59.829 55.000 5.77 0.00 0.00 4.85
3831 3964 0.109272 CTCGCGTTAGTCTTCAGGCA 60.109 55.000 5.77 0.00 0.00 4.75
3832 3965 0.109272 TCGCGTTAGTCTTCAGGCAG 60.109 55.000 5.77 0.00 0.00 4.85
3833 3966 1.078759 CGCGTTAGTCTTCAGGCAGG 61.079 60.000 0.00 0.00 0.00 4.85
3834 3967 0.741221 GCGTTAGTCTTCAGGCAGGG 60.741 60.000 0.00 0.00 0.00 4.45
3835 3968 0.108138 CGTTAGTCTTCAGGCAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
3836 3969 0.393132 GTTAGTCTTCAGGCAGGGGC 60.393 60.000 0.00 0.00 40.13 5.80
3856 3989 3.451894 GGGGGCCACGAAATGCTG 61.452 66.667 4.39 0.00 0.00 4.41
3857 3990 4.133796 GGGGCCACGAAATGCTGC 62.134 66.667 4.39 0.00 0.00 5.25
3858 3991 3.064324 GGGCCACGAAATGCTGCT 61.064 61.111 4.39 0.00 0.00 4.24
3859 3992 2.180017 GGCCACGAAATGCTGCTG 59.820 61.111 0.00 0.00 0.00 4.41
3860 3993 2.180017 GCCACGAAATGCTGCTGG 59.820 61.111 0.00 0.00 0.00 4.85
3861 3994 2.334946 GCCACGAAATGCTGCTGGA 61.335 57.895 7.46 0.00 0.00 3.86
3862 3995 1.798735 CCACGAAATGCTGCTGGAG 59.201 57.895 0.00 0.00 0.00 3.86
3863 3996 0.674581 CCACGAAATGCTGCTGGAGA 60.675 55.000 0.00 0.00 0.00 3.71
3864 3997 0.445436 CACGAAATGCTGCTGGAGAC 59.555 55.000 0.00 0.00 0.00 3.36
3865 3998 0.035317 ACGAAATGCTGCTGGAGACA 59.965 50.000 0.00 0.00 39.59 3.41
3866 3999 1.339438 ACGAAATGCTGCTGGAGACAT 60.339 47.619 0.00 0.33 41.51 3.06
3867 4000 1.741706 CGAAATGCTGCTGGAGACATT 59.258 47.619 0.00 6.68 41.51 2.71
3868 4001 2.163010 CGAAATGCTGCTGGAGACATTT 59.837 45.455 21.58 21.58 41.51 2.32
3869 4002 3.508762 GAAATGCTGCTGGAGACATTTG 58.491 45.455 24.30 0.00 41.51 2.32
3870 4003 0.815734 ATGCTGCTGGAGACATTTGC 59.184 50.000 0.00 0.00 41.51 3.68
3871 4004 0.251033 TGCTGCTGGAGACATTTGCT 60.251 50.000 0.00 0.00 41.51 3.91
3872 4005 0.886563 GCTGCTGGAGACATTTGCTT 59.113 50.000 0.00 0.00 41.51 3.91
3873 4006 2.086869 GCTGCTGGAGACATTTGCTTA 58.913 47.619 0.00 0.00 41.51 3.09
3874 4007 2.159462 GCTGCTGGAGACATTTGCTTAC 60.159 50.000 0.00 0.00 41.51 2.34
3875 4008 2.421424 CTGCTGGAGACATTTGCTTACC 59.579 50.000 0.00 0.00 41.51 2.85
3876 4009 1.398390 GCTGGAGACATTTGCTTACCG 59.602 52.381 0.00 0.00 41.51 4.02
3877 4010 2.699954 CTGGAGACATTTGCTTACCGT 58.300 47.619 0.00 0.00 41.51 4.83
3878 4011 2.416547 CTGGAGACATTTGCTTACCGTG 59.583 50.000 0.00 0.00 41.51 4.94
3879 4012 2.037902 TGGAGACATTTGCTTACCGTGA 59.962 45.455 0.00 0.00 33.40 4.35
3880 4013 3.071479 GGAGACATTTGCTTACCGTGAA 58.929 45.455 0.00 0.00 0.00 3.18
3881 4014 3.125316 GGAGACATTTGCTTACCGTGAAG 59.875 47.826 0.00 0.00 0.00 3.02
3898 4031 3.178539 GCACTAGCTTTGGCGGAC 58.821 61.111 0.00 0.00 44.37 4.79
3899 4032 2.740714 GCACTAGCTTTGGCGGACG 61.741 63.158 0.00 0.00 44.37 4.79
3900 4033 1.080093 CACTAGCTTTGGCGGACGA 60.080 57.895 0.00 0.00 44.37 4.20
3901 4034 0.460284 CACTAGCTTTGGCGGACGAT 60.460 55.000 0.00 0.00 44.37 3.73
3902 4035 0.179108 ACTAGCTTTGGCGGACGATC 60.179 55.000 0.00 0.00 44.37 3.69
3903 4036 0.103208 CTAGCTTTGGCGGACGATCT 59.897 55.000 0.00 0.00 44.37 2.75
3904 4037 0.535335 TAGCTTTGGCGGACGATCTT 59.465 50.000 0.00 0.00 44.37 2.40
3905 4038 1.021390 AGCTTTGGCGGACGATCTTG 61.021 55.000 0.00 0.00 44.37 3.02
3906 4039 1.298859 GCTTTGGCGGACGATCTTGT 61.299 55.000 0.00 0.00 0.00 3.16
3907 4040 0.443869 CTTTGGCGGACGATCTTGTG 59.556 55.000 0.00 0.00 0.00 3.33
3908 4041 0.953471 TTTGGCGGACGATCTTGTGG 60.953 55.000 0.00 0.00 0.00 4.17
3909 4042 1.822114 TTGGCGGACGATCTTGTGGA 61.822 55.000 0.00 0.00 0.00 4.02
3910 4043 1.519455 GGCGGACGATCTTGTGGAG 60.519 63.158 0.00 0.00 0.00 3.86
3911 4044 2.167861 GCGGACGATCTTGTGGAGC 61.168 63.158 0.00 0.00 0.00 4.70
3912 4045 1.215382 CGGACGATCTTGTGGAGCA 59.785 57.895 0.00 0.00 0.00 4.26
3913 4046 0.803768 CGGACGATCTTGTGGAGCAG 60.804 60.000 0.00 0.00 0.00 4.24
3914 4047 0.532573 GGACGATCTTGTGGAGCAGA 59.467 55.000 0.00 0.00 0.00 4.26
3915 4048 1.066858 GGACGATCTTGTGGAGCAGAA 60.067 52.381 0.00 0.00 0.00 3.02
3916 4049 2.266554 GACGATCTTGTGGAGCAGAAG 58.733 52.381 0.00 0.00 36.30 2.85
3917 4050 1.895798 ACGATCTTGTGGAGCAGAAGA 59.104 47.619 0.00 0.00 45.33 2.87
3924 4057 6.737720 TCTTGTGGAGCAGAAGATATATGT 57.262 37.500 0.00 0.00 38.53 2.29
3925 4058 6.519382 TCTTGTGGAGCAGAAGATATATGTG 58.481 40.000 0.00 0.00 38.53 3.21
3926 4059 5.219343 TGTGGAGCAGAAGATATATGTGG 57.781 43.478 0.00 0.00 0.00 4.17
3927 4060 3.999663 GTGGAGCAGAAGATATATGTGGC 59.000 47.826 0.00 0.00 0.00 5.01
3928 4061 3.008375 TGGAGCAGAAGATATATGTGGCC 59.992 47.826 0.00 0.00 0.00 5.36
3929 4062 3.262915 GGAGCAGAAGATATATGTGGCCT 59.737 47.826 3.32 0.00 0.00 5.19
3930 4063 4.502962 GAGCAGAAGATATATGTGGCCTC 58.497 47.826 3.32 0.00 0.00 4.70
3931 4064 3.056250 AGCAGAAGATATATGTGGCCTCG 60.056 47.826 3.32 0.00 0.00 4.63
3932 4065 3.854666 CAGAAGATATATGTGGCCTCGG 58.145 50.000 3.32 0.00 0.00 4.63
3933 4066 3.511540 CAGAAGATATATGTGGCCTCGGA 59.488 47.826 3.32 0.00 0.00 4.55
3934 4067 4.161189 CAGAAGATATATGTGGCCTCGGAT 59.839 45.833 3.32 0.00 0.00 4.18
3935 4068 4.780021 AGAAGATATATGTGGCCTCGGATT 59.220 41.667 3.32 0.00 0.00 3.01
3936 4069 4.478206 AGATATATGTGGCCTCGGATTG 57.522 45.455 3.32 0.00 0.00 2.67
3937 4070 2.472695 TATATGTGGCCTCGGATTGC 57.527 50.000 3.32 0.00 0.00 3.56
3943 4076 2.203126 GCCTCGGATTGCCAGGAG 60.203 66.667 0.00 0.00 35.63 3.69
3944 4077 2.507944 CCTCGGATTGCCAGGAGG 59.492 66.667 0.00 0.00 36.07 4.30
3954 4087 3.708210 CCAGGAGGCGGTCAACTA 58.292 61.111 0.00 0.00 0.00 2.24
3955 4088 1.218316 CCAGGAGGCGGTCAACTAC 59.782 63.158 0.00 0.00 0.00 2.73
3956 4089 1.541310 CCAGGAGGCGGTCAACTACA 61.541 60.000 0.00 0.00 0.00 2.74
3957 4090 0.537188 CAGGAGGCGGTCAACTACAT 59.463 55.000 0.00 0.00 0.00 2.29
3958 4091 1.754803 CAGGAGGCGGTCAACTACATA 59.245 52.381 0.00 0.00 0.00 2.29
3959 4092 2.167693 CAGGAGGCGGTCAACTACATAA 59.832 50.000 0.00 0.00 0.00 1.90
3960 4093 2.835764 AGGAGGCGGTCAACTACATAAA 59.164 45.455 0.00 0.00 0.00 1.40
3961 4094 2.934553 GGAGGCGGTCAACTACATAAAC 59.065 50.000 0.00 0.00 0.00 2.01
3962 4095 3.592059 GAGGCGGTCAACTACATAAACA 58.408 45.455 0.00 0.00 0.00 2.83
3963 4096 3.596214 AGGCGGTCAACTACATAAACAG 58.404 45.455 0.00 0.00 0.00 3.16
3964 4097 3.259876 AGGCGGTCAACTACATAAACAGA 59.740 43.478 0.00 0.00 0.00 3.41
3965 4098 3.617263 GGCGGTCAACTACATAAACAGAG 59.383 47.826 0.00 0.00 0.00 3.35
3966 4099 3.617263 GCGGTCAACTACATAAACAGAGG 59.383 47.826 0.00 0.00 0.00 3.69
3967 4100 4.181578 CGGTCAACTACATAAACAGAGGG 58.818 47.826 0.00 0.00 0.00 4.30
3968 4101 4.081862 CGGTCAACTACATAAACAGAGGGA 60.082 45.833 0.00 0.00 0.00 4.20
3969 4102 5.176592 GGTCAACTACATAAACAGAGGGAC 58.823 45.833 0.00 0.00 0.00 4.46
3970 4103 4.863131 GTCAACTACATAAACAGAGGGACG 59.137 45.833 0.00 0.00 0.00 4.79
3971 4104 4.081862 TCAACTACATAAACAGAGGGACGG 60.082 45.833 0.00 0.00 0.00 4.79
3972 4105 2.764572 ACTACATAAACAGAGGGACGGG 59.235 50.000 0.00 0.00 0.00 5.28
3973 4106 1.652947 ACATAAACAGAGGGACGGGT 58.347 50.000 0.00 0.00 0.00 5.28
3974 4107 1.278127 ACATAAACAGAGGGACGGGTG 59.722 52.381 0.00 0.00 0.00 4.61
3975 4108 0.909623 ATAAACAGAGGGACGGGTGG 59.090 55.000 0.00 0.00 0.00 4.61
3976 4109 0.472352 TAAACAGAGGGACGGGTGGT 60.472 55.000 0.00 0.00 0.00 4.16
3977 4110 1.765597 AAACAGAGGGACGGGTGGTC 61.766 60.000 0.00 0.00 45.31 4.02
3984 4117 4.534401 GACGGGTGGTCCTAATGC 57.466 61.111 0.00 0.00 39.90 3.56
3985 4118 1.905512 GACGGGTGGTCCTAATGCT 59.094 57.895 0.00 0.00 39.90 3.79
3986 4119 0.462047 GACGGGTGGTCCTAATGCTG 60.462 60.000 0.00 0.00 39.90 4.41
3987 4120 1.153168 CGGGTGGTCCTAATGCTGG 60.153 63.158 0.00 0.00 0.00 4.85
3988 4121 1.910580 CGGGTGGTCCTAATGCTGGT 61.911 60.000 0.00 0.00 0.00 4.00
3989 4122 0.331616 GGGTGGTCCTAATGCTGGTT 59.668 55.000 0.00 0.00 0.00 3.67
3990 4123 1.272480 GGGTGGTCCTAATGCTGGTTT 60.272 52.381 0.00 0.00 0.00 3.27
3991 4124 2.025699 GGGTGGTCCTAATGCTGGTTTA 60.026 50.000 0.00 0.00 0.00 2.01
3992 4125 3.279434 GGTGGTCCTAATGCTGGTTTAG 58.721 50.000 0.00 0.00 0.00 1.85
3993 4126 3.308188 GGTGGTCCTAATGCTGGTTTAGT 60.308 47.826 0.00 0.00 0.00 2.24
3994 4127 4.080751 GGTGGTCCTAATGCTGGTTTAGTA 60.081 45.833 0.00 0.00 0.00 1.82
3995 4128 4.874396 GTGGTCCTAATGCTGGTTTAGTAC 59.126 45.833 0.00 0.00 0.00 2.73
3996 4129 4.532916 TGGTCCTAATGCTGGTTTAGTACA 59.467 41.667 0.00 0.00 0.00 2.90
3997 4130 5.190925 TGGTCCTAATGCTGGTTTAGTACAT 59.809 40.000 0.00 0.00 0.00 2.29
3998 4131 5.527582 GGTCCTAATGCTGGTTTAGTACATG 59.472 44.000 0.00 0.00 0.00 3.21
3999 4132 6.346096 GTCCTAATGCTGGTTTAGTACATGA 58.654 40.000 0.00 0.00 0.00 3.07
4000 4133 6.821665 GTCCTAATGCTGGTTTAGTACATGAA 59.178 38.462 0.00 0.00 0.00 2.57
4001 4134 7.335924 GTCCTAATGCTGGTTTAGTACATGAAA 59.664 37.037 0.00 0.00 0.00 2.69
4002 4135 8.052748 TCCTAATGCTGGTTTAGTACATGAAAT 58.947 33.333 0.00 0.00 0.00 2.17
4003 4136 9.337396 CCTAATGCTGGTTTAGTACATGAAATA 57.663 33.333 0.00 0.00 0.00 1.40
4006 4139 7.067532 TGCTGGTTTAGTACATGAAATAACG 57.932 36.000 0.00 0.00 0.00 3.18
4007 4140 6.874664 TGCTGGTTTAGTACATGAAATAACGA 59.125 34.615 0.00 0.00 0.00 3.85
4008 4141 7.388224 TGCTGGTTTAGTACATGAAATAACGAA 59.612 33.333 0.00 0.00 0.00 3.85
4009 4142 7.691050 GCTGGTTTAGTACATGAAATAACGAAC 59.309 37.037 0.00 1.47 0.00 3.95
4010 4143 8.031848 TGGTTTAGTACATGAAATAACGAACC 57.968 34.615 0.00 9.49 35.51 3.62
4011 4144 7.660617 TGGTTTAGTACATGAAATAACGAACCA 59.339 33.333 0.00 11.50 38.51 3.67
4012 4145 8.671028 GGTTTAGTACATGAAATAACGAACCAT 58.329 33.333 0.00 0.00 35.31 3.55
4015 4148 7.478520 AGTACATGAAATAACGAACCATAGC 57.521 36.000 0.00 0.00 0.00 2.97
4016 4149 7.045416 AGTACATGAAATAACGAACCATAGCA 58.955 34.615 0.00 0.00 0.00 3.49
4017 4150 6.751514 ACATGAAATAACGAACCATAGCAA 57.248 33.333 0.00 0.00 0.00 3.91
4018 4151 6.551736 ACATGAAATAACGAACCATAGCAAC 58.448 36.000 0.00 0.00 0.00 4.17
4019 4152 6.150307 ACATGAAATAACGAACCATAGCAACA 59.850 34.615 0.00 0.00 0.00 3.33
4020 4153 6.176975 TGAAATAACGAACCATAGCAACAG 57.823 37.500 0.00 0.00 0.00 3.16
4021 4154 5.703592 TGAAATAACGAACCATAGCAACAGT 59.296 36.000 0.00 0.00 0.00 3.55
4022 4155 6.205853 TGAAATAACGAACCATAGCAACAGTT 59.794 34.615 0.00 0.00 0.00 3.16
4023 4156 6.569179 AATAACGAACCATAGCAACAGTTT 57.431 33.333 0.00 0.00 0.00 2.66
4024 4157 4.911514 AACGAACCATAGCAACAGTTTT 57.088 36.364 0.00 0.00 0.00 2.43
4025 4158 4.223320 ACGAACCATAGCAACAGTTTTG 57.777 40.909 0.00 0.00 0.00 2.44
4026 4159 3.630312 ACGAACCATAGCAACAGTTTTGT 59.370 39.130 0.00 0.00 39.87 2.83
4028 4161 5.040635 CGAACCATAGCAACAGTTTTGTTT 58.959 37.500 0.00 0.00 45.01 2.83
4029 4162 5.173131 CGAACCATAGCAACAGTTTTGTTTC 59.827 40.000 0.00 0.00 45.01 2.78
4030 4163 5.852282 ACCATAGCAACAGTTTTGTTTCT 57.148 34.783 0.00 0.00 45.01 2.52
4031 4164 6.220726 ACCATAGCAACAGTTTTGTTTCTT 57.779 33.333 0.00 0.00 45.01 2.52
4032 4165 6.042143 ACCATAGCAACAGTTTTGTTTCTTG 58.958 36.000 0.00 0.00 45.01 3.02
4033 4166 5.050837 CCATAGCAACAGTTTTGTTTCTTGC 60.051 40.000 0.00 0.00 45.01 4.01
4034 4167 4.192429 AGCAACAGTTTTGTTTCTTGCT 57.808 36.364 0.00 0.00 45.01 3.91
4035 4168 4.176271 AGCAACAGTTTTGTTTCTTGCTC 58.824 39.130 0.00 0.00 45.01 4.26
4036 4169 4.082026 AGCAACAGTTTTGTTTCTTGCTCT 60.082 37.500 0.00 0.00 45.01 4.09
4037 4170 4.627035 GCAACAGTTTTGTTTCTTGCTCTT 59.373 37.500 0.00 0.00 45.01 2.85
4038 4171 5.120674 GCAACAGTTTTGTTTCTTGCTCTTT 59.879 36.000 0.00 0.00 45.01 2.52
4039 4172 6.347644 GCAACAGTTTTGTTTCTTGCTCTTTT 60.348 34.615 0.00 0.00 45.01 2.27
4040 4173 6.710692 ACAGTTTTGTTTCTTGCTCTTTTG 57.289 33.333 0.00 0.00 32.28 2.44
4041 4174 6.223120 ACAGTTTTGTTTCTTGCTCTTTTGT 58.777 32.000 0.00 0.00 32.28 2.83
4042 4175 6.705825 ACAGTTTTGTTTCTTGCTCTTTTGTT 59.294 30.769 0.00 0.00 32.28 2.83
4043 4176 7.226523 ACAGTTTTGTTTCTTGCTCTTTTGTTT 59.773 29.630 0.00 0.00 32.28 2.83
4044 4177 8.069574 CAGTTTTGTTTCTTGCTCTTTTGTTTT 58.930 29.630 0.00 0.00 0.00 2.43
4045 4178 8.282592 AGTTTTGTTTCTTGCTCTTTTGTTTTC 58.717 29.630 0.00 0.00 0.00 2.29
4046 4179 6.388259 TTGTTTCTTGCTCTTTTGTTTTCG 57.612 33.333 0.00 0.00 0.00 3.46
4047 4180 5.704888 TGTTTCTTGCTCTTTTGTTTTCGA 58.295 33.333 0.00 0.00 0.00 3.71
4048 4181 5.799936 TGTTTCTTGCTCTTTTGTTTTCGAG 59.200 36.000 0.00 0.00 0.00 4.04
4049 4182 3.952535 TCTTGCTCTTTTGTTTTCGAGC 58.047 40.909 0.00 0.00 46.74 5.03
4051 4184 2.384899 GCTCTTTTGTTTTCGAGCGT 57.615 45.000 0.00 0.00 39.39 5.07
4052 4185 3.515071 GCTCTTTTGTTTTCGAGCGTA 57.485 42.857 0.00 0.00 39.39 4.42
4053 4186 3.470562 GCTCTTTTGTTTTCGAGCGTAG 58.529 45.455 0.00 0.00 39.39 3.51
4054 4187 3.664537 GCTCTTTTGTTTTCGAGCGTAGG 60.665 47.826 0.00 0.00 39.39 3.18
4055 4188 3.719924 TCTTTTGTTTTCGAGCGTAGGA 58.280 40.909 0.00 0.00 0.00 2.94
4056 4189 4.121317 TCTTTTGTTTTCGAGCGTAGGAA 58.879 39.130 0.00 0.00 0.00 3.36
4057 4190 4.753107 TCTTTTGTTTTCGAGCGTAGGAAT 59.247 37.500 0.00 0.00 0.00 3.01
4058 4191 5.237779 TCTTTTGTTTTCGAGCGTAGGAATT 59.762 36.000 0.00 0.00 0.00 2.17
4059 4192 5.427036 TTTGTTTTCGAGCGTAGGAATTT 57.573 34.783 0.00 0.00 0.00 1.82
4060 4193 5.427036 TTGTTTTCGAGCGTAGGAATTTT 57.573 34.783 0.00 0.00 0.00 1.82
4061 4194 6.542574 TTGTTTTCGAGCGTAGGAATTTTA 57.457 33.333 0.00 0.00 0.00 1.52
4062 4195 6.542574 TGTTTTCGAGCGTAGGAATTTTAA 57.457 33.333 0.00 0.00 0.00 1.52
4063 4196 7.136289 TGTTTTCGAGCGTAGGAATTTTAAT 57.864 32.000 0.00 0.00 0.00 1.40
4064 4197 7.586747 TGTTTTCGAGCGTAGGAATTTTAATT 58.413 30.769 0.00 0.00 0.00 1.40
4065 4198 8.077386 TGTTTTCGAGCGTAGGAATTTTAATTT 58.923 29.630 0.00 0.00 0.00 1.82
4066 4199 8.572976 GTTTTCGAGCGTAGGAATTTTAATTTC 58.427 33.333 0.00 0.00 0.00 2.17
4067 4200 6.028040 TCGAGCGTAGGAATTTTAATTTCG 57.972 37.500 0.00 0.00 0.00 3.46
4068 4201 5.806502 TCGAGCGTAGGAATTTTAATTTCGA 59.193 36.000 3.24 3.24 30.16 3.71
4069 4202 6.020121 TCGAGCGTAGGAATTTTAATTTCGAG 60.020 38.462 3.24 0.00 29.65 4.04
4070 4203 6.359480 AGCGTAGGAATTTTAATTTCGAGG 57.641 37.500 0.00 0.00 0.00 4.63
4071 4204 4.968181 GCGTAGGAATTTTAATTTCGAGGC 59.032 41.667 5.82 5.82 34.76 4.70
4072 4205 5.220796 GCGTAGGAATTTTAATTTCGAGGCT 60.221 40.000 11.56 0.00 37.40 4.58
4073 4206 6.419771 CGTAGGAATTTTAATTTCGAGGCTC 58.580 40.000 3.87 3.87 0.00 4.70
4074 4207 6.036735 CGTAGGAATTTTAATTTCGAGGCTCA 59.963 38.462 15.95 0.00 0.00 4.26
4075 4208 7.254795 CGTAGGAATTTTAATTTCGAGGCTCAT 60.255 37.037 15.95 0.00 0.00 2.90
4076 4209 9.052759 GTAGGAATTTTAATTTCGAGGCTCATA 57.947 33.333 15.95 0.00 0.00 2.15
4077 4210 8.519799 AGGAATTTTAATTTCGAGGCTCATAA 57.480 30.769 15.95 8.00 0.00 1.90
4078 4211 9.136323 AGGAATTTTAATTTCGAGGCTCATAAT 57.864 29.630 15.95 10.01 0.00 1.28
4079 4212 9.399403 GGAATTTTAATTTCGAGGCTCATAATC 57.601 33.333 15.95 0.58 0.00 1.75
4082 4215 9.956720 ATTTTAATTTCGAGGCTCATAATCTTG 57.043 29.630 15.95 0.00 0.00 3.02
4083 4216 5.429957 AATTTCGAGGCTCATAATCTTGC 57.570 39.130 15.95 0.00 0.00 4.01
4084 4217 2.533266 TCGAGGCTCATAATCTTGCC 57.467 50.000 15.95 0.00 45.21 4.52
4090 4223 4.725790 GGCTCATAATCTTGCCAAGTTT 57.274 40.909 4.04 5.19 44.34 2.66
4091 4224 4.427312 GGCTCATAATCTTGCCAAGTTTG 58.573 43.478 10.33 2.71 44.34 2.93
4092 4225 3.861689 GCTCATAATCTTGCCAAGTTTGC 59.138 43.478 10.33 2.70 0.00 3.68
4093 4226 4.381292 GCTCATAATCTTGCCAAGTTTGCT 60.381 41.667 10.33 0.00 0.00 3.91
4094 4227 5.717119 CTCATAATCTTGCCAAGTTTGCTT 58.283 37.500 10.33 0.00 34.82 3.91
4109 4242 8.665175 CAAGTTTGCTTGTAATCTTGACATAG 57.335 34.615 13.29 0.00 45.18 2.23
4110 4243 7.383102 AGTTTGCTTGTAATCTTGACATAGG 57.617 36.000 0.00 0.00 0.00 2.57
4111 4244 6.942576 AGTTTGCTTGTAATCTTGACATAGGT 59.057 34.615 0.00 0.00 0.00 3.08
4112 4245 8.100791 AGTTTGCTTGTAATCTTGACATAGGTA 58.899 33.333 0.00 0.00 0.00 3.08
4113 4246 8.391106 GTTTGCTTGTAATCTTGACATAGGTAG 58.609 37.037 0.00 0.00 0.00 3.18
4114 4247 7.418337 TGCTTGTAATCTTGACATAGGTAGA 57.582 36.000 0.00 0.00 0.00 2.59
4115 4248 7.265673 TGCTTGTAATCTTGACATAGGTAGAC 58.734 38.462 0.00 0.00 0.00 2.59
4116 4249 7.093509 TGCTTGTAATCTTGACATAGGTAGACA 60.094 37.037 0.00 0.00 0.00 3.41
4117 4250 7.928706 GCTTGTAATCTTGACATAGGTAGACAT 59.071 37.037 0.00 0.00 0.00 3.06
4118 4251 9.254133 CTTGTAATCTTGACATAGGTAGACATG 57.746 37.037 0.00 0.00 0.00 3.21
4119 4252 8.306313 TGTAATCTTGACATAGGTAGACATGT 57.694 34.615 0.00 0.00 38.08 3.21
4120 4253 8.758829 TGTAATCTTGACATAGGTAGACATGTT 58.241 33.333 0.00 0.00 35.55 2.71
4121 4254 9.601217 GTAATCTTGACATAGGTAGACATGTTT 57.399 33.333 0.00 0.00 35.55 2.83
4122 4255 8.498054 AATCTTGACATAGGTAGACATGTTTG 57.502 34.615 0.00 0.00 35.55 2.93
4123 4256 6.406370 TCTTGACATAGGTAGACATGTTTGG 58.594 40.000 0.00 0.00 35.55 3.28
4124 4257 5.755409 TGACATAGGTAGACATGTTTGGT 57.245 39.130 0.00 0.00 35.55 3.67
4125 4258 6.121776 TGACATAGGTAGACATGTTTGGTT 57.878 37.500 0.00 0.00 35.55 3.67
4126 4259 5.937540 TGACATAGGTAGACATGTTTGGTTG 59.062 40.000 0.00 0.00 35.55 3.77
4127 4260 5.253330 ACATAGGTAGACATGTTTGGTTGG 58.747 41.667 0.00 0.00 31.32 3.77
4128 4261 3.154827 AGGTAGACATGTTTGGTTGGG 57.845 47.619 0.00 0.00 0.00 4.12
4129 4262 2.445525 AGGTAGACATGTTTGGTTGGGT 59.554 45.455 0.00 0.00 0.00 4.51
4130 4263 3.117284 AGGTAGACATGTTTGGTTGGGTT 60.117 43.478 0.00 0.00 0.00 4.11
4131 4264 4.105057 AGGTAGACATGTTTGGTTGGGTTA 59.895 41.667 0.00 0.00 0.00 2.85
4132 4265 4.216902 GGTAGACATGTTTGGTTGGGTTAC 59.783 45.833 0.00 0.00 0.00 2.50
4133 4266 3.227614 AGACATGTTTGGTTGGGTTACC 58.772 45.455 0.00 0.00 38.73 2.85
4134 4267 2.297880 GACATGTTTGGTTGGGTTACCC 59.702 50.000 14.66 14.66 45.71 3.69
4144 4277 1.078001 GGGTTACCCACATGACCCG 60.078 63.158 16.81 0.00 44.65 5.28
4145 4278 1.555477 GGGTTACCCACATGACCCGA 61.555 60.000 16.81 0.00 44.65 5.14
4146 4279 0.325602 GGTTACCCACATGACCCGAA 59.674 55.000 0.00 0.00 0.00 4.30
4147 4280 1.445871 GTTACCCACATGACCCGAAC 58.554 55.000 0.00 0.00 0.00 3.95
4148 4281 0.325602 TTACCCACATGACCCGAACC 59.674 55.000 0.00 0.00 0.00 3.62
4149 4282 0.545787 TACCCACATGACCCGAACCT 60.546 55.000 0.00 0.00 0.00 3.50
4150 4283 1.378762 CCCACATGACCCGAACCTT 59.621 57.895 0.00 0.00 0.00 3.50
4151 4284 0.960364 CCCACATGACCCGAACCTTG 60.960 60.000 0.00 0.00 0.00 3.61
4152 4285 0.250727 CCACATGACCCGAACCTTGT 60.251 55.000 0.00 0.00 0.00 3.16
4153 4286 1.002659 CCACATGACCCGAACCTTGTA 59.997 52.381 0.00 0.00 0.00 2.41
4154 4287 2.073816 CACATGACCCGAACCTTGTAC 58.926 52.381 0.00 0.00 0.00 2.90
4155 4288 1.002773 ACATGACCCGAACCTTGTACC 59.997 52.381 0.00 0.00 0.00 3.34
4156 4289 1.278127 CATGACCCGAACCTTGTACCT 59.722 52.381 0.00 0.00 0.00 3.08
4157 4290 2.307496 TGACCCGAACCTTGTACCTA 57.693 50.000 0.00 0.00 0.00 3.08
4158 4291 2.823959 TGACCCGAACCTTGTACCTAT 58.176 47.619 0.00 0.00 0.00 2.57
4159 4292 2.498481 TGACCCGAACCTTGTACCTATG 59.502 50.000 0.00 0.00 0.00 2.23
4160 4293 2.762327 GACCCGAACCTTGTACCTATGA 59.238 50.000 0.00 0.00 0.00 2.15
4161 4294 2.498885 ACCCGAACCTTGTACCTATGAC 59.501 50.000 0.00 0.00 0.00 3.06
4162 4295 2.498481 CCCGAACCTTGTACCTATGACA 59.502 50.000 0.00 0.00 0.00 3.58
4163 4296 3.055675 CCCGAACCTTGTACCTATGACAA 60.056 47.826 0.00 0.00 35.55 3.18
4164 4297 4.383770 CCCGAACCTTGTACCTATGACAAT 60.384 45.833 0.00 0.00 36.27 2.71
4165 4298 5.183228 CCGAACCTTGTACCTATGACAATT 58.817 41.667 0.00 0.00 36.27 2.32
4166 4299 5.293569 CCGAACCTTGTACCTATGACAATTC 59.706 44.000 0.00 0.00 36.27 2.17
4167 4300 5.293569 CGAACCTTGTACCTATGACAATTCC 59.706 44.000 0.00 0.00 36.27 3.01
4168 4301 6.388619 AACCTTGTACCTATGACAATTCCT 57.611 37.500 0.00 0.00 36.27 3.36
4169 4302 6.388619 ACCTTGTACCTATGACAATTCCTT 57.611 37.500 0.00 0.00 36.27 3.36
4170 4303 6.790319 ACCTTGTACCTATGACAATTCCTTT 58.210 36.000 0.00 0.00 36.27 3.11
4171 4304 6.659242 ACCTTGTACCTATGACAATTCCTTTG 59.341 38.462 0.00 0.00 41.36 2.77
4172 4305 6.884295 CCTTGTACCTATGACAATTCCTTTGA 59.116 38.462 0.00 0.00 38.76 2.69
4173 4306 7.393234 CCTTGTACCTATGACAATTCCTTTGAA 59.607 37.037 0.00 0.00 38.76 2.69
4174 4307 8.877864 TTGTACCTATGACAATTCCTTTGAAT 57.122 30.769 0.00 0.00 43.08 2.57
4175 4308 8.279970 TGTACCTATGACAATTCCTTTGAATG 57.720 34.615 0.00 0.00 40.34 2.67
4176 4309 8.106462 TGTACCTATGACAATTCCTTTGAATGA 58.894 33.333 0.00 0.00 40.34 2.57
4177 4310 8.956426 GTACCTATGACAATTCCTTTGAATGAA 58.044 33.333 0.00 0.00 40.34 2.57
4178 4311 8.599624 ACCTATGACAATTCCTTTGAATGAAT 57.400 30.769 0.00 0.00 40.34 2.57
4179 4312 9.699410 ACCTATGACAATTCCTTTGAATGAATA 57.301 29.630 0.00 0.00 40.34 1.75
4187 4320 9.305925 CAATTCCTTTGAATGAATAAAGTAGGC 57.694 33.333 0.00 0.00 40.34 3.93
4188 4321 6.677781 TCCTTTGAATGAATAAAGTAGGCG 57.322 37.500 0.00 0.00 33.21 5.52
4189 4322 6.411376 TCCTTTGAATGAATAAAGTAGGCGA 58.589 36.000 0.00 0.00 33.21 5.54
4190 4323 6.538742 TCCTTTGAATGAATAAAGTAGGCGAG 59.461 38.462 0.00 0.00 33.21 5.03
4191 4324 6.238484 CCTTTGAATGAATAAAGTAGGCGAGG 60.238 42.308 0.00 0.00 33.21 4.63
4192 4325 5.353394 TGAATGAATAAAGTAGGCGAGGT 57.647 39.130 0.00 0.00 0.00 3.85
4193 4326 5.741011 TGAATGAATAAAGTAGGCGAGGTT 58.259 37.500 0.00 0.00 0.00 3.50
4194 4327 6.177610 TGAATGAATAAAGTAGGCGAGGTTT 58.822 36.000 0.00 0.00 0.00 3.27
4195 4328 6.315393 TGAATGAATAAAGTAGGCGAGGTTTC 59.685 38.462 0.00 0.00 0.00 2.78
4196 4329 5.416271 TGAATAAAGTAGGCGAGGTTTCT 57.584 39.130 0.00 0.00 0.00 2.52
4197 4330 6.534475 TGAATAAAGTAGGCGAGGTTTCTA 57.466 37.500 0.00 0.00 0.00 2.10
4198 4331 6.938507 TGAATAAAGTAGGCGAGGTTTCTAA 58.061 36.000 0.00 0.00 0.00 2.10
4199 4332 7.388437 TGAATAAAGTAGGCGAGGTTTCTAAA 58.612 34.615 0.00 0.00 0.00 1.85
4200 4333 7.879160 TGAATAAAGTAGGCGAGGTTTCTAAAA 59.121 33.333 0.00 0.00 0.00 1.52
4201 4334 8.625786 AATAAAGTAGGCGAGGTTTCTAAAAA 57.374 30.769 0.00 0.00 0.00 1.94
4321 4454 7.582667 AACTCATTAGGTTGTGCTAAGTTTT 57.417 32.000 0.00 0.00 0.00 2.43
4322 4455 7.582667 ACTCATTAGGTTGTGCTAAGTTTTT 57.417 32.000 0.00 0.00 0.00 1.94
4341 4474 2.903404 TTTTTGCGGGGAAGGTTGT 58.097 47.368 0.00 0.00 0.00 3.32
4353 4490 0.951558 AAGGTTGTGCTAAGTTGCCG 59.048 50.000 0.00 0.00 0.00 5.69
4377 4514 0.026674 CGTTGCCACTGTCGCATATG 59.973 55.000 0.00 0.00 35.83 1.78
4378 4515 0.248215 GTTGCCACTGTCGCATATGC 60.248 55.000 18.08 18.08 35.83 3.14
4379 4516 0.676151 TTGCCACTGTCGCATATGCA 60.676 50.000 26.52 11.60 42.21 3.96
4442 4582 2.975799 GCGGCCTTGTCGGTTTCA 60.976 61.111 0.00 0.00 34.25 2.69
4476 4617 6.423604 CACCAACCTTCGAAGCATTTTTAAAT 59.576 34.615 19.99 0.00 0.00 1.40
4488 4629 6.334202 AGCATTTTTAAATATTTCCCGCGAA 58.666 32.000 8.23 0.00 0.00 4.70
4489 4630 6.254804 AGCATTTTTAAATATTTCCCGCGAAC 59.745 34.615 8.23 0.00 0.00 3.95
4490 4631 6.508880 GCATTTTTAAATATTTCCCGCGAACC 60.509 38.462 8.23 0.00 0.00 3.62
4523 4664 1.374190 CAACTGAGAGGCTGCCACT 59.626 57.895 22.65 20.68 0.00 4.00
4524 4665 0.610174 CAACTGAGAGGCTGCCACTA 59.390 55.000 22.65 8.08 0.00 2.74
4525 4666 0.610687 AACTGAGAGGCTGCCACTAC 59.389 55.000 22.65 13.77 0.00 2.73
4536 4677 3.824443 GGCTGCCACTACCTTTTAAAAGA 59.176 43.478 26.11 9.00 38.28 2.52
4544 4685 5.412904 CACTACCTTTTAAAAGAGAGGGCAG 59.587 44.000 26.11 13.77 38.28 4.85
4551 4692 5.784578 TTAAAAGAGAGGGCAGGAAAAAC 57.215 39.130 0.00 0.00 0.00 2.43
4588 4729 4.882427 GTGCCTAGGAAAAAGGAAGGATAC 59.118 45.833 14.75 0.00 36.08 2.24
4593 4734 6.374613 CCTAGGAAAAAGGAAGGATACACAAC 59.625 42.308 1.05 0.00 36.08 3.32
4602 4743 2.699954 AGGATACACAACTGCGAAAGG 58.300 47.619 0.00 0.00 41.41 3.11
4612 4753 0.813210 CTGCGAAAGGAGGGAGATGC 60.813 60.000 0.00 0.00 46.80 3.91
4705 4846 0.252197 AACGTATTGGTCCCTGCTCC 59.748 55.000 0.00 0.00 0.00 4.70
4756 4897 6.316140 GCTAATGTCCATGTACATTCAACTCA 59.684 38.462 18.71 1.53 44.79 3.41
4759 4900 5.003160 TGTCCATGTACATTCAACTCAAGG 58.997 41.667 5.37 1.07 0.00 3.61
4884 5031 1.111277 AAACTTCCACACAAGGCCAC 58.889 50.000 5.01 0.00 0.00 5.01
5054 5201 3.243975 ACTGTACCCACTAACGAACCTTG 60.244 47.826 0.00 0.00 0.00 3.61
5304 5453 5.960113 TCCGTATTTATTTGCTGCATTTGT 58.040 33.333 1.84 0.00 0.00 2.83
5314 5463 3.049206 TGCTGCATTTGTTAACGCTTTC 58.951 40.909 0.00 0.00 0.00 2.62
5320 5469 3.619233 TTTGTTAACGCTTTCCTCAGC 57.381 42.857 0.26 0.00 36.33 4.26
5339 5488 1.884235 CGGAGCAGAGGACTGTTTTT 58.116 50.000 0.00 0.00 45.04 1.94
5340 5489 1.801178 CGGAGCAGAGGACTGTTTTTC 59.199 52.381 0.00 0.00 45.04 2.29
5342 5491 3.481453 GGAGCAGAGGACTGTTTTTCTT 58.519 45.455 0.00 0.00 45.04 2.52
5343 5492 3.500299 GGAGCAGAGGACTGTTTTTCTTC 59.500 47.826 0.00 0.00 45.04 2.87
5350 5499 7.413644 CAGAGGACTGTTTTTCTTCTTCTTTC 58.586 38.462 0.00 0.00 39.11 2.62
5373 5522 8.462143 TTCGAAACTAGATAGCACACTTAAAG 57.538 34.615 0.00 0.00 0.00 1.85
5397 5546 5.487153 AACACTGTGTACGTTTTGCAATA 57.513 34.783 14.69 0.00 0.00 1.90
5440 5591 1.064166 CATGCTTGGAACCCCTCTGAT 60.064 52.381 0.00 0.00 0.00 2.90
5872 6023 1.284785 CAGGCTGGTAGAAATGGGGAA 59.715 52.381 6.61 0.00 0.00 3.97
6179 6333 6.425114 ACTTTTGTGCTAACTGACTCAGTATG 59.575 38.462 12.22 9.07 44.62 2.39
6428 6584 7.014615 ACAGAAGAAAAGTTAGGCATGAATGTT 59.985 33.333 0.00 0.00 0.00 2.71
6530 6686 6.657541 ACCACAAAACGTTGATCCAAGTATAT 59.342 34.615 0.00 0.00 38.20 0.86
6602 6758 3.146066 GTTTGACATAGAGCCCACAACA 58.854 45.455 0.00 0.00 0.00 3.33
6699 6855 3.314080 TGTTAGCTTTGTAAAGTGCGCTT 59.686 39.130 9.73 6.71 38.28 4.68
6835 6991 4.717877 TCTTCAACAAGCAGATCAAAGGA 58.282 39.130 0.00 0.00 0.00 3.36
6859 7015 5.013568 ACAAGAGAGAGATCATTCAGCTG 57.986 43.478 7.63 7.63 0.00 4.24
6903 7059 4.798882 ACCACAGAGGAAACCAATTGTAA 58.201 39.130 4.43 0.00 41.22 2.41
6904 7060 4.827284 ACCACAGAGGAAACCAATTGTAAG 59.173 41.667 4.43 0.00 41.22 2.34
6905 7061 4.827284 CCACAGAGGAAACCAATTGTAAGT 59.173 41.667 4.43 0.00 41.22 2.24
6906 7062 5.301805 CCACAGAGGAAACCAATTGTAAGTT 59.698 40.000 4.43 0.00 41.22 2.66
6907 7063 6.438763 CACAGAGGAAACCAATTGTAAGTTC 58.561 40.000 4.43 2.44 0.00 3.01
6908 7064 6.039270 CACAGAGGAAACCAATTGTAAGTTCA 59.961 38.462 4.43 0.00 0.00 3.18
6909 7065 6.263168 ACAGAGGAAACCAATTGTAAGTTCAG 59.737 38.462 4.43 0.00 0.00 3.02
6910 7066 6.486657 CAGAGGAAACCAATTGTAAGTTCAGA 59.513 38.462 4.43 0.00 0.00 3.27
6917 7073 5.239525 ACCAATTGTAAGTTCAGAGTTCAGC 59.760 40.000 4.43 0.00 0.00 4.26
6935 7091 4.959596 CAGCAAAACTGTCAGCTCATAT 57.040 40.909 0.00 0.00 41.86 1.78
6951 7107 8.851145 TCAGCTCATATACTACTACTTTTCCTG 58.149 37.037 0.00 0.00 0.00 3.86
6998 7154 1.075374 TCTTTTGGGTGTGGGATCCTG 59.925 52.381 12.58 0.00 0.00 3.86
7051 7207 2.705127 TGCCCTAGTGCATGATGTCATA 59.295 45.455 0.00 0.00 36.04 2.15
7052 7208 3.136260 TGCCCTAGTGCATGATGTCATAA 59.864 43.478 0.00 0.00 36.04 1.90
7150 7306 1.007387 CACCTTGTTCTTTGGCGCC 60.007 57.895 22.73 22.73 0.00 6.53
7241 7397 2.034812 TGTTTGCCGGTTGGTGATTAAC 59.965 45.455 1.90 0.00 37.67 2.01
7251 7407 7.331193 GCCGGTTGGTGATTAACTATAGAATAG 59.669 40.741 6.78 0.00 37.67 1.73
7427 7583 2.432444 TGCACATTACAGTTAGTGGGC 58.568 47.619 0.00 0.00 43.12 5.36
7444 7600 1.351350 GGGCTCTTGTAGGGTCAACTT 59.649 52.381 0.00 0.00 0.00 2.66
7548 7714 2.892852 CCTTTCTTCAGGGCATGAACAA 59.107 45.455 10.99 4.34 43.09 2.83
7701 7867 0.318441 TCCTGCTGTCTGAAACCTCG 59.682 55.000 0.00 0.00 0.00 4.63
7755 7921 1.740296 CGGCAACTACAAGGGACCG 60.740 63.158 0.00 0.00 0.00 4.79
7799 7965 3.943381 GGGTATGTACGCTTAAGGCTTTT 59.057 43.478 4.45 0.00 39.13 2.27
7800 7966 4.397103 GGGTATGTACGCTTAAGGCTTTTT 59.603 41.667 4.45 0.00 39.13 1.94
7801 7967 5.448225 GGGTATGTACGCTTAAGGCTTTTTC 60.448 44.000 4.45 0.00 39.13 2.29
7802 7968 5.122711 GGTATGTACGCTTAAGGCTTTTTCA 59.877 40.000 4.45 0.00 39.13 2.69
7816 7982 5.067954 GGCTTTTTCACTTACCAGAACCTA 58.932 41.667 0.00 0.00 0.00 3.08
7833 8006 2.578021 ACCTAGTCAGTGCCATTTCCAT 59.422 45.455 0.00 0.00 0.00 3.41
7848 8021 6.128822 GCCATTTCCATTTTCTTTTCGACTTC 60.129 38.462 0.00 0.00 0.00 3.01
7865 8038 6.998338 TCGACTTCTCTATTACTGTTCGTAC 58.002 40.000 0.00 0.00 0.00 3.67
7876 8049 3.118542 ACTGTTCGTACAACCGAAGAAC 58.881 45.455 0.00 0.00 46.45 3.01
7885 8058 0.238289 AACCGAAGAACGCATTGCAG 59.762 50.000 9.69 4.31 41.07 4.41
7908 8086 6.255670 CAGTGCTAGAATTTGCATCTTACGTA 59.744 38.462 0.00 0.00 41.45 3.57
8421 8599 1.134699 CATAGAGTCGCAGGGCTGAAA 60.135 52.381 0.00 0.00 0.00 2.69
8829 9020 7.605309 ACTGGATGCATACATACATAGATGTTG 59.395 37.037 13.22 0.00 46.25 3.33
8880 9075 7.526142 TTGCAGGTCTATATACAGGTAGAAG 57.474 40.000 0.00 0.00 0.00 2.85
8930 9125 7.272244 TGATCACTTGTGTTGTTCTTCTCTTA 58.728 34.615 0.00 0.00 0.00 2.10
8994 9190 3.670625 TGTACGTAGCTGCAAGGATTTT 58.329 40.909 1.02 0.00 0.00 1.82
9028 9224 8.897752 AGAATCTGCATATTCCAAGAAGTAAAC 58.102 33.333 18.31 0.00 36.68 2.01
9029 9225 8.814038 AATCTGCATATTCCAAGAAGTAAACT 57.186 30.769 0.00 0.00 0.00 2.66
9030 9226 7.615582 TCTGCATATTCCAAGAAGTAAACTG 57.384 36.000 0.00 0.00 0.00 3.16
9031 9227 7.168219 TCTGCATATTCCAAGAAGTAAACTGT 58.832 34.615 0.00 0.00 0.00 3.55
9032 9228 8.318412 TCTGCATATTCCAAGAAGTAAACTGTA 58.682 33.333 0.00 0.00 0.00 2.74
9052 9248 3.951775 AAACAGTTTGACAAGCAACCA 57.048 38.095 4.77 0.00 35.91 3.67
9089 9289 4.770010 CCAGGTTTTAAGCTTAACCATCCA 59.230 41.667 25.88 7.71 44.99 3.41
9097 9297 7.589958 TTAAGCTTAACCATCCAAAACAGAA 57.410 32.000 14.96 0.00 0.00 3.02
9250 9450 2.432146 TGGTTTGCCAAAACACAGCATA 59.568 40.909 3.23 0.00 46.30 3.14
9308 9509 8.062065 ACTTCAAAACACACCTAATTCTTCAA 57.938 30.769 0.00 0.00 0.00 2.69
9336 9537 3.733988 CGTCTACTCCGAAGCATGCTTAA 60.734 47.826 32.02 18.97 36.26 1.85
9344 9545 4.697828 TCCGAAGCATGCTTAACAAACATA 59.302 37.500 32.02 7.24 36.26 2.29
9347 9548 4.019919 AGCATGCTTAACAAACATAGCG 57.980 40.909 16.30 0.00 36.43 4.26
9395 9596 4.840716 AGGACAGCAAATCAGAGATTCT 57.159 40.909 0.00 0.00 0.00 2.40
9397 9598 3.626670 GGACAGCAAATCAGAGATTCTGG 59.373 47.826 6.27 0.00 44.39 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.655848 ACGTCTAAGAGTTCAGTGTTCTCTAT 59.344 38.462 15.85 10.85 37.54 1.98
1 2 5.996513 ACGTCTAAGAGTTCAGTGTTCTCTA 59.003 40.000 15.85 3.56 37.54 2.43
2 3 4.822896 ACGTCTAAGAGTTCAGTGTTCTCT 59.177 41.667 11.81 11.81 39.79 3.10
8 9 3.004419 TGACCACGTCTAAGAGTTCAGTG 59.996 47.826 0.00 0.00 33.15 3.66
11 12 4.038763 ACAATGACCACGTCTAAGAGTTCA 59.961 41.667 0.00 0.00 33.15 3.18
14 15 3.306088 CCACAATGACCACGTCTAAGAGT 60.306 47.826 0.00 0.00 33.15 3.24
32 33 2.421388 CGAAAATAGATGGCCTCCCACA 60.421 50.000 3.32 0.00 45.77 4.17
45 46 6.347110 GTTTGTCTTTTTGCTGCGAAAATAG 58.653 36.000 23.89 15.50 0.00 1.73
56 57 7.359181 CGATTTTCATAGGGTTTGTCTTTTTGC 60.359 37.037 0.00 0.00 0.00 3.68
62 63 6.370718 GTGTACGATTTTCATAGGGTTTGTCT 59.629 38.462 0.00 0.00 0.00 3.41
64 65 5.998981 TGTGTACGATTTTCATAGGGTTTGT 59.001 36.000 0.00 0.00 0.00 2.83
82 83 9.817809 TTGACCATCTCTTAGATTTATGTGTAC 57.182 33.333 0.00 0.00 31.32 2.90
137 139 6.381133 GGTTTTGAGATTTGAAGATGGGGTAT 59.619 38.462 0.00 0.00 0.00 2.73
162 164 2.095263 ACCCATTTGAGAAAATCACGCG 60.095 45.455 3.53 3.53 37.77 6.01
174 176 4.822685 ATTTGCATGCTTACCCATTTGA 57.177 36.364 20.33 0.00 0.00 2.69
204 206 3.864583 TGCATGCTTTTCTCAACAACAAC 59.135 39.130 20.33 0.00 0.00 3.32
275 277 2.418197 GCTGTAATGTGCGAGGGTAGAA 60.418 50.000 0.00 0.00 0.00 2.10
334 336 2.417787 GGTACAGGCGAATACGGAAGTT 60.418 50.000 0.00 0.00 46.40 2.66
388 390 4.752879 CCCCGCATCCGTGTTCGT 62.753 66.667 0.00 0.00 35.01 3.85
480 482 1.227556 CGGTCCTTGGGCCTTATCG 60.228 63.158 4.53 0.00 0.00 2.92
686 699 2.125512 GCGCAGATCCGACAAGGT 60.126 61.111 0.30 0.00 41.99 3.50
834 848 2.017049 CCTGTTCTAAATCGGCTTGGG 58.983 52.381 0.00 0.00 0.00 4.12
856 870 4.353437 GTGTTCGACGGACGCCCT 62.353 66.667 8.72 0.00 42.26 5.19
874 888 4.314740 AGCTTTTTGTAATGGCGTCAAA 57.685 36.364 0.00 0.00 0.00 2.69
921 935 4.891727 CTCGATTCCCGGCCCGTG 62.892 72.222 0.85 0.00 39.14 4.94
928 942 2.203771 CCCTCCCTCTCGATTCCCG 61.204 68.421 0.00 0.00 40.25 5.14
1591 1625 6.090898 GCGCACACGAGGATTAATTAATAGAT 59.909 38.462 10.68 0.41 43.93 1.98
1662 1696 5.525199 ACTAACGGAAAATTTCAAATGCGT 58.475 33.333 8.09 4.78 0.00 5.24
1734 1768 1.259609 AACGACCAGATCCAACCGTA 58.740 50.000 0.00 0.00 0.00 4.02
1754 1788 1.070105 CGGAAGAAACCACGGGTGA 59.930 57.895 0.00 0.00 35.34 4.02
1755 1789 2.613506 GCGGAAGAAACCACGGGTG 61.614 63.158 0.00 0.00 35.34 4.61
1756 1790 2.281276 GCGGAAGAAACCACGGGT 60.281 61.111 0.00 0.00 37.65 5.28
1757 1791 1.852067 CTTGCGGAAGAAACCACGGG 61.852 60.000 11.79 0.00 0.00 5.28
1758 1792 1.574428 CTTGCGGAAGAAACCACGG 59.426 57.895 11.79 0.00 0.00 4.94
1827 1866 0.837940 GGAAGCCTAATTCGGACCCT 59.162 55.000 0.00 0.00 0.00 4.34
1831 1870 3.945285 GTCATTTGGAAGCCTAATTCGGA 59.055 43.478 0.00 0.00 27.30 4.55
1998 2064 1.143183 GGCTGAATAACTCCGCCGA 59.857 57.895 0.00 0.00 43.58 5.54
1999 2065 3.719214 GGCTGAATAACTCCGCCG 58.281 61.111 0.00 0.00 43.58 6.46
2159 2225 4.724602 TGCGCACGGACAGAGAGC 62.725 66.667 5.66 0.00 36.85 4.09
2166 2232 2.325509 AATAAAGTTTGCGCACGGAC 57.674 45.000 11.12 9.83 0.00 4.79
2176 2242 1.471287 GGCGAGCCGGAAATAAAGTTT 59.529 47.619 5.05 0.00 0.00 2.66
2330 2400 2.602676 CCCCCGACAGGTGATGGTT 61.603 63.158 0.00 0.00 35.12 3.67
2589 2678 1.540367 AAATCTGGTGACCCCCGGA 60.540 57.895 0.73 0.00 43.93 5.14
2615 2705 0.942252 AAAGGTTTTGTCGAGACCGC 59.058 50.000 0.34 0.00 38.48 5.68
2658 2748 4.299978 GTGTCATCGCTAGTTAATCTCCC 58.700 47.826 0.00 0.00 0.00 4.30
2708 2798 3.040099 CACAGCCCGAAAGTTAAAAACG 58.960 45.455 0.00 0.00 36.23 3.60
2823 2913 2.569853 TGCATTCCCGACTCTCCTTTTA 59.430 45.455 0.00 0.00 0.00 1.52
2826 2916 1.207791 ATGCATTCCCGACTCTCCTT 58.792 50.000 0.00 0.00 0.00 3.36
2938 3038 1.811266 CACGGCCAGTCAATCTCGG 60.811 63.158 2.24 0.00 0.00 4.63
2951 3051 0.939106 GTGACAAATGCAACCACGGC 60.939 55.000 0.00 0.00 0.00 5.68
2954 3054 1.753956 GACGTGACAAATGCAACCAC 58.246 50.000 0.00 0.00 0.00 4.16
2969 3069 1.202440 TGTCCAACTTTGTAGCGACGT 60.202 47.619 0.00 0.00 0.00 4.34
3050 3152 6.767902 ACCCTACATGTTGTATCATGACAATC 59.232 38.462 2.30 0.00 45.41 2.67
3120 3225 2.101185 ACTCGCGTCGCTCTCATG 59.899 61.111 16.36 0.00 0.00 3.07
3248 3359 9.553064 CTGAAACTATACCATTGAATTCTAGCT 57.447 33.333 7.05 0.00 0.00 3.32
3569 3689 0.457851 GATCTGGGTCCAGTCGAGTG 59.542 60.000 13.55 13.55 43.96 3.51
3712 3837 2.354729 CTGGTTGATTGGGCCGGA 59.645 61.111 5.05 0.00 0.00 5.14
3746 3871 2.358737 AGAAGAAACGCGGCCAGG 60.359 61.111 12.47 0.00 0.00 4.45
3777 3903 1.071228 ACAGGTGTACCGGTTTTCTCC 59.929 52.381 15.04 14.03 41.69 3.71
3785 3911 4.404098 GGCCCACAGGTGTACCGG 62.404 72.222 0.00 0.00 42.08 5.28
3839 3972 3.451894 CAGCATTTCGTGGCCCCC 61.452 66.667 0.00 0.00 0.00 5.40
3840 3973 4.133796 GCAGCATTTCGTGGCCCC 62.134 66.667 0.00 0.00 0.00 5.80
3841 3974 3.064324 AGCAGCATTTCGTGGCCC 61.064 61.111 0.00 0.00 0.00 5.80
3842 3975 2.180017 CAGCAGCATTTCGTGGCC 59.820 61.111 0.00 0.00 0.00 5.36
3843 3976 2.180017 CCAGCAGCATTTCGTGGC 59.820 61.111 0.00 0.00 0.00 5.01
3844 3977 0.674581 TCTCCAGCAGCATTTCGTGG 60.675 55.000 0.00 0.00 0.00 4.94
3845 3978 0.445436 GTCTCCAGCAGCATTTCGTG 59.555 55.000 0.00 0.00 0.00 4.35
3846 3979 0.035317 TGTCTCCAGCAGCATTTCGT 59.965 50.000 0.00 0.00 0.00 3.85
3847 3980 1.376543 ATGTCTCCAGCAGCATTTCG 58.623 50.000 0.00 0.00 0.00 3.46
3848 3981 3.508762 CAAATGTCTCCAGCAGCATTTC 58.491 45.455 0.00 0.00 37.03 2.17
3849 3982 2.353406 GCAAATGTCTCCAGCAGCATTT 60.353 45.455 0.00 0.00 38.40 2.32
3850 3983 1.203994 GCAAATGTCTCCAGCAGCATT 59.796 47.619 0.00 0.00 33.07 3.56
3851 3984 0.815734 GCAAATGTCTCCAGCAGCAT 59.184 50.000 0.00 0.00 0.00 3.79
3852 3985 0.251033 AGCAAATGTCTCCAGCAGCA 60.251 50.000 0.00 0.00 0.00 4.41
3853 3986 0.886563 AAGCAAATGTCTCCAGCAGC 59.113 50.000 0.00 0.00 0.00 5.25
3854 3987 2.421424 GGTAAGCAAATGTCTCCAGCAG 59.579 50.000 0.00 0.00 0.00 4.24
3855 3988 2.436417 GGTAAGCAAATGTCTCCAGCA 58.564 47.619 0.00 0.00 0.00 4.41
3856 3989 1.398390 CGGTAAGCAAATGTCTCCAGC 59.602 52.381 0.00 0.00 0.00 4.85
3857 3990 2.416547 CACGGTAAGCAAATGTCTCCAG 59.583 50.000 0.00 0.00 0.00 3.86
3858 3991 2.037902 TCACGGTAAGCAAATGTCTCCA 59.962 45.455 0.00 0.00 0.00 3.86
3859 3992 2.695359 TCACGGTAAGCAAATGTCTCC 58.305 47.619 0.00 0.00 0.00 3.71
3860 3993 4.327854 CTTCACGGTAAGCAAATGTCTC 57.672 45.455 0.00 0.00 0.00 3.36
3881 4014 2.740714 CGTCCGCCAAAGCTAGTGC 61.741 63.158 0.00 0.00 36.60 4.40
3882 4015 0.460284 ATCGTCCGCCAAAGCTAGTG 60.460 55.000 0.00 0.00 36.60 2.74
3883 4016 0.179108 GATCGTCCGCCAAAGCTAGT 60.179 55.000 0.00 0.00 36.60 2.57
3884 4017 0.103208 AGATCGTCCGCCAAAGCTAG 59.897 55.000 0.00 0.00 36.60 3.42
3885 4018 0.535335 AAGATCGTCCGCCAAAGCTA 59.465 50.000 0.00 0.00 36.60 3.32
3886 4019 1.021390 CAAGATCGTCCGCCAAAGCT 61.021 55.000 0.00 0.00 36.60 3.74
3887 4020 1.298859 ACAAGATCGTCCGCCAAAGC 61.299 55.000 0.00 0.00 0.00 3.51
3888 4021 0.443869 CACAAGATCGTCCGCCAAAG 59.556 55.000 0.00 0.00 0.00 2.77
3889 4022 0.953471 CCACAAGATCGTCCGCCAAA 60.953 55.000 0.00 0.00 0.00 3.28
3890 4023 1.375396 CCACAAGATCGTCCGCCAA 60.375 57.895 0.00 0.00 0.00 4.52
3891 4024 2.225791 CTCCACAAGATCGTCCGCCA 62.226 60.000 0.00 0.00 0.00 5.69
3892 4025 1.519455 CTCCACAAGATCGTCCGCC 60.519 63.158 0.00 0.00 0.00 6.13
3893 4026 2.167861 GCTCCACAAGATCGTCCGC 61.168 63.158 0.00 0.00 0.00 5.54
3894 4027 0.803768 CTGCTCCACAAGATCGTCCG 60.804 60.000 0.00 0.00 0.00 4.79
3895 4028 0.532573 TCTGCTCCACAAGATCGTCC 59.467 55.000 0.00 0.00 0.00 4.79
3896 4029 2.094494 TCTTCTGCTCCACAAGATCGTC 60.094 50.000 0.00 0.00 0.00 4.20
3897 4030 1.895798 TCTTCTGCTCCACAAGATCGT 59.104 47.619 0.00 0.00 0.00 3.73
3898 4031 2.662006 TCTTCTGCTCCACAAGATCG 57.338 50.000 0.00 0.00 0.00 3.69
3899 4032 7.331440 CACATATATCTTCTGCTCCACAAGATC 59.669 40.741 0.08 0.00 37.85 2.75
3900 4033 7.160049 CACATATATCTTCTGCTCCACAAGAT 58.840 38.462 0.00 0.00 39.63 2.40
3901 4034 6.463472 CCACATATATCTTCTGCTCCACAAGA 60.463 42.308 0.00 0.00 0.00 3.02
3902 4035 5.699915 CCACATATATCTTCTGCTCCACAAG 59.300 44.000 0.00 0.00 0.00 3.16
3903 4036 5.614308 CCACATATATCTTCTGCTCCACAA 58.386 41.667 0.00 0.00 0.00 3.33
3904 4037 4.503817 GCCACATATATCTTCTGCTCCACA 60.504 45.833 0.00 0.00 0.00 4.17
3905 4038 3.999663 GCCACATATATCTTCTGCTCCAC 59.000 47.826 0.00 0.00 0.00 4.02
3906 4039 3.008375 GGCCACATATATCTTCTGCTCCA 59.992 47.826 0.00 0.00 0.00 3.86
3907 4040 3.262915 AGGCCACATATATCTTCTGCTCC 59.737 47.826 5.01 0.00 0.00 4.70
3908 4041 4.502962 GAGGCCACATATATCTTCTGCTC 58.497 47.826 5.01 0.00 0.00 4.26
3909 4042 3.056250 CGAGGCCACATATATCTTCTGCT 60.056 47.826 5.01 0.00 0.00 4.24
3910 4043 3.257393 CGAGGCCACATATATCTTCTGC 58.743 50.000 5.01 0.00 0.00 4.26
3911 4044 3.511540 TCCGAGGCCACATATATCTTCTG 59.488 47.826 5.01 0.00 0.00 3.02
3912 4045 3.779444 TCCGAGGCCACATATATCTTCT 58.221 45.455 5.01 0.00 0.00 2.85
3913 4046 4.744795 ATCCGAGGCCACATATATCTTC 57.255 45.455 5.01 0.00 0.00 2.87
3914 4047 4.836825 CAATCCGAGGCCACATATATCTT 58.163 43.478 5.01 0.00 0.00 2.40
3915 4048 3.369892 GCAATCCGAGGCCACATATATCT 60.370 47.826 5.01 0.00 0.00 1.98
3916 4049 2.939103 GCAATCCGAGGCCACATATATC 59.061 50.000 5.01 0.00 0.00 1.63
3917 4050 2.991250 GCAATCCGAGGCCACATATAT 58.009 47.619 5.01 0.00 0.00 0.86
3918 4051 2.472695 GCAATCCGAGGCCACATATA 57.527 50.000 5.01 0.00 0.00 0.86
3919 4052 3.329300 GCAATCCGAGGCCACATAT 57.671 52.632 5.01 0.00 0.00 1.78
3920 4053 4.876701 GCAATCCGAGGCCACATA 57.123 55.556 5.01 0.00 0.00 2.29
3926 4059 2.203126 CTCCTGGCAATCCGAGGC 60.203 66.667 0.00 0.00 33.40 4.70
3927 4060 2.507944 CCTCCTGGCAATCCGAGG 59.492 66.667 5.50 5.50 34.88 4.63
3937 4070 1.218316 GTAGTTGACCGCCTCCTGG 59.782 63.158 0.00 0.00 0.00 4.45
3938 4071 0.537188 ATGTAGTTGACCGCCTCCTG 59.463 55.000 0.00 0.00 0.00 3.86
3939 4072 2.154567 TATGTAGTTGACCGCCTCCT 57.845 50.000 0.00 0.00 0.00 3.69
3940 4073 2.934553 GTTTATGTAGTTGACCGCCTCC 59.065 50.000 0.00 0.00 0.00 4.30
3941 4074 3.592059 TGTTTATGTAGTTGACCGCCTC 58.408 45.455 0.00 0.00 0.00 4.70
3942 4075 3.259876 TCTGTTTATGTAGTTGACCGCCT 59.740 43.478 0.00 0.00 0.00 5.52
3943 4076 3.592059 TCTGTTTATGTAGTTGACCGCC 58.408 45.455 0.00 0.00 0.00 6.13
3944 4077 3.617263 CCTCTGTTTATGTAGTTGACCGC 59.383 47.826 0.00 0.00 0.00 5.68
3945 4078 4.081862 TCCCTCTGTTTATGTAGTTGACCG 60.082 45.833 0.00 0.00 0.00 4.79
3946 4079 5.176592 GTCCCTCTGTTTATGTAGTTGACC 58.823 45.833 0.00 0.00 0.00 4.02
3947 4080 4.863131 CGTCCCTCTGTTTATGTAGTTGAC 59.137 45.833 0.00 0.00 0.00 3.18
3948 4081 4.081862 CCGTCCCTCTGTTTATGTAGTTGA 60.082 45.833 0.00 0.00 0.00 3.18
3949 4082 4.181578 CCGTCCCTCTGTTTATGTAGTTG 58.818 47.826 0.00 0.00 0.00 3.16
3950 4083 3.197116 CCCGTCCCTCTGTTTATGTAGTT 59.803 47.826 0.00 0.00 0.00 2.24
3951 4084 2.764572 CCCGTCCCTCTGTTTATGTAGT 59.235 50.000 0.00 0.00 0.00 2.73
3952 4085 2.764572 ACCCGTCCCTCTGTTTATGTAG 59.235 50.000 0.00 0.00 0.00 2.74
3953 4086 2.498481 CACCCGTCCCTCTGTTTATGTA 59.502 50.000 0.00 0.00 0.00 2.29
3954 4087 1.278127 CACCCGTCCCTCTGTTTATGT 59.722 52.381 0.00 0.00 0.00 2.29
3955 4088 1.406887 CCACCCGTCCCTCTGTTTATG 60.407 57.143 0.00 0.00 0.00 1.90
3956 4089 0.909623 CCACCCGTCCCTCTGTTTAT 59.090 55.000 0.00 0.00 0.00 1.40
3957 4090 0.472352 ACCACCCGTCCCTCTGTTTA 60.472 55.000 0.00 0.00 0.00 2.01
3958 4091 1.765597 GACCACCCGTCCCTCTGTTT 61.766 60.000 0.00 0.00 35.23 2.83
3959 4092 2.122547 ACCACCCGTCCCTCTGTT 60.123 61.111 0.00 0.00 0.00 3.16
3960 4093 2.603776 GACCACCCGTCCCTCTGT 60.604 66.667 0.00 0.00 35.23 3.41
3967 4100 0.462047 CAGCATTAGGACCACCCGTC 60.462 60.000 0.00 0.00 40.87 4.79
3968 4101 1.602237 CAGCATTAGGACCACCCGT 59.398 57.895 0.00 0.00 40.87 5.28
3969 4102 1.153168 CCAGCATTAGGACCACCCG 60.153 63.158 0.00 0.00 40.87 5.28
3970 4103 0.331616 AACCAGCATTAGGACCACCC 59.668 55.000 0.00 0.00 36.73 4.61
3971 4104 2.215942 AAACCAGCATTAGGACCACC 57.784 50.000 0.00 0.00 0.00 4.61
3972 4105 3.951663 ACTAAACCAGCATTAGGACCAC 58.048 45.455 0.00 0.00 35.20 4.16
3973 4106 4.532916 TGTACTAAACCAGCATTAGGACCA 59.467 41.667 6.28 0.00 41.54 4.02
3974 4107 5.093849 TGTACTAAACCAGCATTAGGACC 57.906 43.478 6.28 0.00 41.54 4.46
3975 4108 6.346096 TCATGTACTAAACCAGCATTAGGAC 58.654 40.000 2.42 2.42 42.24 3.85
3976 4109 6.553953 TCATGTACTAAACCAGCATTAGGA 57.446 37.500 0.00 0.00 35.20 2.94
3977 4110 7.624360 TTTCATGTACTAAACCAGCATTAGG 57.376 36.000 0.00 0.00 35.20 2.69
3980 4113 8.181573 CGTTATTTCATGTACTAAACCAGCATT 58.818 33.333 0.00 0.00 0.00 3.56
3981 4114 7.551262 TCGTTATTTCATGTACTAAACCAGCAT 59.449 33.333 0.00 0.00 0.00 3.79
3982 4115 6.874664 TCGTTATTTCATGTACTAAACCAGCA 59.125 34.615 0.00 0.00 0.00 4.41
3983 4116 7.298507 TCGTTATTTCATGTACTAAACCAGC 57.701 36.000 0.00 0.00 0.00 4.85
3984 4117 8.173130 GGTTCGTTATTTCATGTACTAAACCAG 58.827 37.037 0.00 0.00 0.00 4.00
3985 4118 7.660617 TGGTTCGTTATTTCATGTACTAAACCA 59.339 33.333 0.00 0.00 0.00 3.67
3986 4119 8.031848 TGGTTCGTTATTTCATGTACTAAACC 57.968 34.615 0.00 0.00 0.00 3.27
3989 4122 9.037737 GCTATGGTTCGTTATTTCATGTACTAA 57.962 33.333 0.00 0.00 0.00 2.24
3990 4123 8.198778 TGCTATGGTTCGTTATTTCATGTACTA 58.801 33.333 0.00 0.00 0.00 1.82
3991 4124 7.045416 TGCTATGGTTCGTTATTTCATGTACT 58.955 34.615 0.00 0.00 0.00 2.73
3992 4125 7.241663 TGCTATGGTTCGTTATTTCATGTAC 57.758 36.000 0.00 0.00 0.00 2.90
3993 4126 7.334671 TGTTGCTATGGTTCGTTATTTCATGTA 59.665 33.333 0.00 0.00 0.00 2.29
3994 4127 6.150307 TGTTGCTATGGTTCGTTATTTCATGT 59.850 34.615 0.00 0.00 0.00 3.21
3995 4128 6.550843 TGTTGCTATGGTTCGTTATTTCATG 58.449 36.000 0.00 0.00 0.00 3.07
3996 4129 6.374333 ACTGTTGCTATGGTTCGTTATTTCAT 59.626 34.615 0.00 0.00 0.00 2.57
3997 4130 5.703592 ACTGTTGCTATGGTTCGTTATTTCA 59.296 36.000 0.00 0.00 0.00 2.69
3998 4131 6.178239 ACTGTTGCTATGGTTCGTTATTTC 57.822 37.500 0.00 0.00 0.00 2.17
3999 4132 6.569179 AACTGTTGCTATGGTTCGTTATTT 57.431 33.333 0.00 0.00 0.00 1.40
4000 4133 6.569179 AAACTGTTGCTATGGTTCGTTATT 57.431 33.333 0.00 0.00 0.00 1.40
4001 4134 6.016610 ACAAAACTGTTGCTATGGTTCGTTAT 60.017 34.615 0.00 0.00 0.00 1.89
4002 4135 5.297278 ACAAAACTGTTGCTATGGTTCGTTA 59.703 36.000 0.00 0.00 0.00 3.18
4003 4136 4.097286 ACAAAACTGTTGCTATGGTTCGTT 59.903 37.500 0.00 0.00 0.00 3.85
4004 4137 3.630312 ACAAAACTGTTGCTATGGTTCGT 59.370 39.130 0.00 0.00 0.00 3.85
4005 4138 4.223320 ACAAAACTGTTGCTATGGTTCG 57.777 40.909 0.00 0.00 0.00 3.95
4006 4139 6.273071 AGAAACAAAACTGTTGCTATGGTTC 58.727 36.000 13.96 13.96 35.98 3.62
4007 4140 6.220726 AGAAACAAAACTGTTGCTATGGTT 57.779 33.333 0.00 0.00 35.98 3.67
4008 4141 5.852282 AGAAACAAAACTGTTGCTATGGT 57.148 34.783 0.00 0.00 35.98 3.55
4009 4142 5.050837 GCAAGAAACAAAACTGTTGCTATGG 60.051 40.000 0.00 0.00 36.70 2.74
4010 4143 5.750067 AGCAAGAAACAAAACTGTTGCTATG 59.250 36.000 5.61 2.60 46.60 2.23
4011 4144 5.906073 AGCAAGAAACAAAACTGTTGCTAT 58.094 33.333 5.61 0.00 46.60 2.97
4012 4145 5.323371 AGCAAGAAACAAAACTGTTGCTA 57.677 34.783 5.61 0.00 46.60 3.49
4013 4146 4.192429 AGCAAGAAACAAAACTGTTGCT 57.808 36.364 1.61 1.61 44.37 3.91
4014 4147 4.176271 AGAGCAAGAAACAAAACTGTTGC 58.824 39.130 0.00 0.00 40.45 4.17
4015 4148 6.710692 AAAGAGCAAGAAACAAAACTGTTG 57.289 33.333 0.00 0.00 31.64 3.33
4016 4149 6.705825 ACAAAAGAGCAAGAAACAAAACTGTT 59.294 30.769 0.00 0.00 0.00 3.16
4017 4150 6.223120 ACAAAAGAGCAAGAAACAAAACTGT 58.777 32.000 0.00 0.00 0.00 3.55
4018 4151 6.710692 ACAAAAGAGCAAGAAACAAAACTG 57.289 33.333 0.00 0.00 0.00 3.16
4019 4152 7.728847 AAACAAAAGAGCAAGAAACAAAACT 57.271 28.000 0.00 0.00 0.00 2.66
4020 4153 7.266125 CGAAAACAAAAGAGCAAGAAACAAAAC 59.734 33.333 0.00 0.00 0.00 2.43
4021 4154 7.169982 TCGAAAACAAAAGAGCAAGAAACAAAA 59.830 29.630 0.00 0.00 0.00 2.44
4022 4155 6.642950 TCGAAAACAAAAGAGCAAGAAACAAA 59.357 30.769 0.00 0.00 0.00 2.83
4023 4156 6.153067 TCGAAAACAAAAGAGCAAGAAACAA 58.847 32.000 0.00 0.00 0.00 2.83
4024 4157 5.704888 TCGAAAACAAAAGAGCAAGAAACA 58.295 33.333 0.00 0.00 0.00 2.83
4025 4158 6.248201 CTCGAAAACAAAAGAGCAAGAAAC 57.752 37.500 0.00 0.00 0.00 2.78
4033 4166 3.739300 TCCTACGCTCGAAAACAAAAGAG 59.261 43.478 0.00 0.00 0.00 2.85
4034 4167 3.719924 TCCTACGCTCGAAAACAAAAGA 58.280 40.909 0.00 0.00 0.00 2.52
4035 4168 4.461992 TTCCTACGCTCGAAAACAAAAG 57.538 40.909 0.00 0.00 0.00 2.27
4036 4169 5.427036 AATTCCTACGCTCGAAAACAAAA 57.573 34.783 0.00 0.00 0.00 2.44
4037 4170 5.427036 AAATTCCTACGCTCGAAAACAAA 57.573 34.783 0.00 0.00 0.00 2.83
4038 4171 5.427036 AAAATTCCTACGCTCGAAAACAA 57.573 34.783 0.00 0.00 0.00 2.83
4039 4172 6.542574 TTAAAATTCCTACGCTCGAAAACA 57.457 33.333 0.00 0.00 0.00 2.83
4040 4173 8.443898 AAATTAAAATTCCTACGCTCGAAAAC 57.556 30.769 0.00 0.00 0.00 2.43
4041 4174 7.479291 CGAAATTAAAATTCCTACGCTCGAAAA 59.521 33.333 0.00 0.00 0.00 2.29
4042 4175 6.957077 CGAAATTAAAATTCCTACGCTCGAAA 59.043 34.615 0.00 0.00 0.00 3.46
4043 4176 6.310956 TCGAAATTAAAATTCCTACGCTCGAA 59.689 34.615 0.00 0.00 29.89 3.71
4044 4177 5.806502 TCGAAATTAAAATTCCTACGCTCGA 59.193 36.000 0.00 3.35 30.16 4.04
4045 4178 6.028040 TCGAAATTAAAATTCCTACGCTCG 57.972 37.500 0.00 0.00 0.00 5.03
4046 4179 6.419771 CCTCGAAATTAAAATTCCTACGCTC 58.580 40.000 0.00 0.00 0.00 5.03
4047 4180 5.220796 GCCTCGAAATTAAAATTCCTACGCT 60.221 40.000 0.00 0.00 0.00 5.07
4048 4181 4.968181 GCCTCGAAATTAAAATTCCTACGC 59.032 41.667 0.00 0.00 0.00 4.42
4049 4182 6.036735 TGAGCCTCGAAATTAAAATTCCTACG 59.963 38.462 0.00 0.00 0.00 3.51
4050 4183 7.316544 TGAGCCTCGAAATTAAAATTCCTAC 57.683 36.000 0.00 0.00 0.00 3.18
4051 4184 9.621629 TTATGAGCCTCGAAATTAAAATTCCTA 57.378 29.630 0.00 0.00 0.00 2.94
4052 4185 8.519799 TTATGAGCCTCGAAATTAAAATTCCT 57.480 30.769 0.00 0.00 0.00 3.36
4053 4186 9.399403 GATTATGAGCCTCGAAATTAAAATTCC 57.601 33.333 0.00 0.00 0.00 3.01
4056 4189 9.956720 CAAGATTATGAGCCTCGAAATTAAAAT 57.043 29.630 0.00 0.00 0.00 1.82
4057 4190 7.915397 GCAAGATTATGAGCCTCGAAATTAAAA 59.085 33.333 0.00 0.00 0.00 1.52
4058 4191 7.417612 GCAAGATTATGAGCCTCGAAATTAAA 58.582 34.615 0.00 0.00 0.00 1.52
4059 4192 6.017109 GGCAAGATTATGAGCCTCGAAATTAA 60.017 38.462 0.00 0.00 43.70 1.40
4060 4193 5.470098 GGCAAGATTATGAGCCTCGAAATTA 59.530 40.000 0.00 0.00 43.70 1.40
4061 4194 4.276926 GGCAAGATTATGAGCCTCGAAATT 59.723 41.667 0.00 0.00 43.70 1.82
4062 4195 3.817647 GGCAAGATTATGAGCCTCGAAAT 59.182 43.478 0.00 0.00 43.70 2.17
4063 4196 3.206150 GGCAAGATTATGAGCCTCGAAA 58.794 45.455 0.00 0.00 43.70 3.46
4064 4197 2.838736 GGCAAGATTATGAGCCTCGAA 58.161 47.619 0.00 0.00 43.70 3.71
4065 4198 2.533266 GGCAAGATTATGAGCCTCGA 57.467 50.000 0.00 0.00 43.70 4.04
4070 4203 3.861689 GCAAACTTGGCAAGATTATGAGC 59.138 43.478 32.50 20.99 0.00 4.26
4071 4204 5.320549 AGCAAACTTGGCAAGATTATGAG 57.679 39.130 32.50 15.84 0.00 2.90
4072 4205 5.726980 AAGCAAACTTGGCAAGATTATGA 57.273 34.783 32.50 0.00 33.84 2.15
4085 4218 7.448469 ACCTATGTCAAGATTACAAGCAAACTT 59.552 33.333 0.00 0.00 36.19 2.66
4086 4219 6.942576 ACCTATGTCAAGATTACAAGCAAACT 59.057 34.615 0.00 0.00 0.00 2.66
4087 4220 7.145932 ACCTATGTCAAGATTACAAGCAAAC 57.854 36.000 0.00 0.00 0.00 2.93
4088 4221 8.318412 TCTACCTATGTCAAGATTACAAGCAAA 58.682 33.333 0.00 0.00 0.00 3.68
4089 4222 7.764443 GTCTACCTATGTCAAGATTACAAGCAA 59.236 37.037 0.00 0.00 0.00 3.91
4090 4223 7.093509 TGTCTACCTATGTCAAGATTACAAGCA 60.094 37.037 0.00 0.00 0.00 3.91
4091 4224 7.265673 TGTCTACCTATGTCAAGATTACAAGC 58.734 38.462 0.00 0.00 0.00 4.01
4092 4225 9.254133 CATGTCTACCTATGTCAAGATTACAAG 57.746 37.037 0.00 0.00 0.00 3.16
4093 4226 8.758829 ACATGTCTACCTATGTCAAGATTACAA 58.241 33.333 0.00 0.00 32.32 2.41
4094 4227 8.306313 ACATGTCTACCTATGTCAAGATTACA 57.694 34.615 0.00 0.00 32.32 2.41
4095 4228 9.601217 AAACATGTCTACCTATGTCAAGATTAC 57.399 33.333 0.00 0.00 36.56 1.89
4096 4229 9.599866 CAAACATGTCTACCTATGTCAAGATTA 57.400 33.333 0.00 0.00 36.56 1.75
4097 4230 7.554118 CCAAACATGTCTACCTATGTCAAGATT 59.446 37.037 0.00 0.00 36.56 2.40
4098 4231 7.050377 CCAAACATGTCTACCTATGTCAAGAT 58.950 38.462 0.00 0.00 36.56 2.40
4099 4232 6.013725 ACCAAACATGTCTACCTATGTCAAGA 60.014 38.462 0.00 0.00 36.56 3.02
4100 4233 6.173339 ACCAAACATGTCTACCTATGTCAAG 58.827 40.000 0.00 0.00 36.56 3.02
4101 4234 6.121776 ACCAAACATGTCTACCTATGTCAA 57.878 37.500 0.00 0.00 36.56 3.18
4102 4235 5.755409 ACCAAACATGTCTACCTATGTCA 57.245 39.130 0.00 0.00 36.56 3.58
4103 4236 5.354234 CCAACCAAACATGTCTACCTATGTC 59.646 44.000 0.00 0.00 36.56 3.06
4104 4237 5.253330 CCAACCAAACATGTCTACCTATGT 58.747 41.667 0.00 0.00 39.08 2.29
4105 4238 4.640201 CCCAACCAAACATGTCTACCTATG 59.360 45.833 0.00 0.00 0.00 2.23
4106 4239 4.291249 ACCCAACCAAACATGTCTACCTAT 59.709 41.667 0.00 0.00 0.00 2.57
4107 4240 3.653836 ACCCAACCAAACATGTCTACCTA 59.346 43.478 0.00 0.00 0.00 3.08
4108 4241 2.445525 ACCCAACCAAACATGTCTACCT 59.554 45.455 0.00 0.00 0.00 3.08
4109 4242 2.871453 ACCCAACCAAACATGTCTACC 58.129 47.619 0.00 0.00 0.00 3.18
4110 4243 4.216902 GGTAACCCAACCAAACATGTCTAC 59.783 45.833 0.00 0.00 39.50 2.59
4111 4244 4.400120 GGTAACCCAACCAAACATGTCTA 58.600 43.478 0.00 0.00 39.50 2.59
4112 4245 3.227614 GGTAACCCAACCAAACATGTCT 58.772 45.455 0.00 0.00 39.50 3.41
4113 4246 3.653539 GGTAACCCAACCAAACATGTC 57.346 47.619 0.00 0.00 39.50 3.06
4128 4261 1.445871 GTTCGGGTCATGTGGGTAAC 58.554 55.000 0.00 0.00 0.00 2.50
4129 4262 0.325602 GGTTCGGGTCATGTGGGTAA 59.674 55.000 0.00 0.00 0.00 2.85
4130 4263 0.545787 AGGTTCGGGTCATGTGGGTA 60.546 55.000 0.00 0.00 0.00 3.69
4131 4264 1.423794 AAGGTTCGGGTCATGTGGGT 61.424 55.000 0.00 0.00 0.00 4.51
4132 4265 0.960364 CAAGGTTCGGGTCATGTGGG 60.960 60.000 0.00 0.00 0.00 4.61
4133 4266 0.250727 ACAAGGTTCGGGTCATGTGG 60.251 55.000 0.00 0.00 0.00 4.17
4134 4267 2.073816 GTACAAGGTTCGGGTCATGTG 58.926 52.381 0.00 0.00 0.00 3.21
4135 4268 1.002773 GGTACAAGGTTCGGGTCATGT 59.997 52.381 0.00 0.00 0.00 3.21
4136 4269 1.278127 AGGTACAAGGTTCGGGTCATG 59.722 52.381 0.00 0.00 0.00 3.07
4137 4270 1.652947 AGGTACAAGGTTCGGGTCAT 58.347 50.000 0.00 0.00 0.00 3.06
4138 4271 2.307496 TAGGTACAAGGTTCGGGTCA 57.693 50.000 0.00 0.00 0.00 4.02
4139 4272 2.762327 TCATAGGTACAAGGTTCGGGTC 59.238 50.000 0.00 0.00 0.00 4.46
4140 4273 2.498885 GTCATAGGTACAAGGTTCGGGT 59.501 50.000 0.00 0.00 0.00 5.28
4141 4274 2.498481 TGTCATAGGTACAAGGTTCGGG 59.502 50.000 0.00 0.00 0.00 5.14
4142 4275 3.880047 TGTCATAGGTACAAGGTTCGG 57.120 47.619 0.00 0.00 0.00 4.30
4143 4276 5.293569 GGAATTGTCATAGGTACAAGGTTCG 59.706 44.000 0.00 0.00 40.00 3.95
4144 4277 6.415573 AGGAATTGTCATAGGTACAAGGTTC 58.584 40.000 0.00 0.00 40.00 3.62
4145 4278 6.388619 AGGAATTGTCATAGGTACAAGGTT 57.611 37.500 0.00 0.00 40.00 3.50
4146 4279 6.388619 AAGGAATTGTCATAGGTACAAGGT 57.611 37.500 0.00 0.00 40.00 3.50
4147 4280 6.884295 TCAAAGGAATTGTCATAGGTACAAGG 59.116 38.462 0.00 0.00 40.00 3.61
4148 4281 7.921786 TCAAAGGAATTGTCATAGGTACAAG 57.078 36.000 0.00 0.00 40.00 3.16
4149 4282 8.739039 CATTCAAAGGAATTGTCATAGGTACAA 58.261 33.333 0.00 0.00 41.78 2.41
4150 4283 8.106462 TCATTCAAAGGAATTGTCATAGGTACA 58.894 33.333 0.00 0.00 41.78 2.90
4151 4284 8.506168 TCATTCAAAGGAATTGTCATAGGTAC 57.494 34.615 0.00 0.00 41.78 3.34
4152 4285 9.699410 ATTCATTCAAAGGAATTGTCATAGGTA 57.301 29.630 0.00 0.00 41.78 3.08
4153 4286 8.599624 ATTCATTCAAAGGAATTGTCATAGGT 57.400 30.769 0.00 0.00 41.78 3.08
4161 4294 9.305925 GCCTACTTTATTCATTCAAAGGAATTG 57.694 33.333 7.81 3.14 41.78 2.32
4162 4295 8.190784 CGCCTACTTTATTCATTCAAAGGAATT 58.809 33.333 7.81 0.00 41.78 2.17
4163 4296 7.556275 TCGCCTACTTTATTCATTCAAAGGAAT 59.444 33.333 7.65 7.65 44.51 3.01
4164 4297 6.882140 TCGCCTACTTTATTCATTCAAAGGAA 59.118 34.615 0.00 0.00 36.32 3.36
4165 4298 6.411376 TCGCCTACTTTATTCATTCAAAGGA 58.589 36.000 0.00 0.00 36.32 3.36
4166 4299 6.238484 CCTCGCCTACTTTATTCATTCAAAGG 60.238 42.308 0.00 0.00 36.32 3.11
4167 4300 6.316390 ACCTCGCCTACTTTATTCATTCAAAG 59.684 38.462 0.00 0.00 37.69 2.77
4168 4301 6.177610 ACCTCGCCTACTTTATTCATTCAAA 58.822 36.000 0.00 0.00 0.00 2.69
4169 4302 5.741011 ACCTCGCCTACTTTATTCATTCAA 58.259 37.500 0.00 0.00 0.00 2.69
4170 4303 5.353394 ACCTCGCCTACTTTATTCATTCA 57.647 39.130 0.00 0.00 0.00 2.57
4171 4304 6.539103 AGAAACCTCGCCTACTTTATTCATTC 59.461 38.462 0.00 0.00 0.00 2.67
4172 4305 6.415573 AGAAACCTCGCCTACTTTATTCATT 58.584 36.000 0.00 0.00 0.00 2.57
4173 4306 5.990668 AGAAACCTCGCCTACTTTATTCAT 58.009 37.500 0.00 0.00 0.00 2.57
4174 4307 5.416271 AGAAACCTCGCCTACTTTATTCA 57.584 39.130 0.00 0.00 0.00 2.57
4175 4308 7.838771 TTTAGAAACCTCGCCTACTTTATTC 57.161 36.000 0.00 0.00 0.00 1.75
4176 4309 8.625786 TTTTTAGAAACCTCGCCTACTTTATT 57.374 30.769 0.00 0.00 0.00 1.40
4323 4456 0.461961 CACAACCTTCCCCGCAAAAA 59.538 50.000 0.00 0.00 0.00 1.94
4324 4457 2.022240 GCACAACCTTCCCCGCAAAA 62.022 55.000 0.00 0.00 0.00 2.44
4325 4458 2.494530 GCACAACCTTCCCCGCAAA 61.495 57.895 0.00 0.00 0.00 3.68
4326 4459 2.058125 TAGCACAACCTTCCCCGCAA 62.058 55.000 0.00 0.00 0.00 4.85
4327 4460 2.058125 TTAGCACAACCTTCCCCGCA 62.058 55.000 0.00 0.00 0.00 5.69
4331 4464 1.269723 GCAACTTAGCACAACCTTCCC 59.730 52.381 0.00 0.00 0.00 3.97
4332 4465 1.269723 GGCAACTTAGCACAACCTTCC 59.730 52.381 0.00 0.00 35.83 3.46
4333 4466 1.069227 CGGCAACTTAGCACAACCTTC 60.069 52.381 0.00 0.00 35.83 3.46
4334 4467 0.951558 CGGCAACTTAGCACAACCTT 59.048 50.000 0.00 0.00 35.83 3.50
4341 4474 3.055719 GCTGGCGGCAACTTAGCA 61.056 61.111 14.48 0.00 41.35 3.49
4366 4503 0.942252 ACATGCTGCATATGCGACAG 59.058 50.000 22.21 15.09 45.83 3.51
4377 4514 3.589881 GATCGGCCCACATGCTGC 61.590 66.667 0.00 0.00 37.54 5.25
4378 4515 0.250424 TATGATCGGCCCACATGCTG 60.250 55.000 12.32 0.00 39.04 4.41
4379 4516 0.694771 ATATGATCGGCCCACATGCT 59.305 50.000 12.32 0.54 0.00 3.79
4442 4582 1.839424 GAAGGTTGGTGGCTTAGCAT 58.161 50.000 6.53 0.00 36.53 3.79
4476 4617 1.564483 AAGGGGGTTCGCGGGAAATA 61.564 55.000 17.22 0.00 33.05 1.40
4488 4629 2.090775 AGTTGTCAATTTGGAAGGGGGT 60.091 45.455 0.00 0.00 0.00 4.95
4489 4630 2.299867 CAGTTGTCAATTTGGAAGGGGG 59.700 50.000 0.00 0.00 0.00 5.40
4490 4631 3.230134 TCAGTTGTCAATTTGGAAGGGG 58.770 45.455 0.00 0.00 0.00 4.79
4523 4664 4.600111 TCCTGCCCTCTCTTTTAAAAGGTA 59.400 41.667 24.20 13.48 36.67 3.08
4524 4665 3.397955 TCCTGCCCTCTCTTTTAAAAGGT 59.602 43.478 24.20 0.00 36.67 3.50
4525 4666 4.034285 TCCTGCCCTCTCTTTTAAAAGG 57.966 45.455 24.20 16.10 36.67 3.11
4551 4692 1.915141 AGGCACAGGAAAACATGAGG 58.085 50.000 0.00 0.00 0.00 3.86
4588 4729 0.250295 TCCCTCCTTTCGCAGTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
4593 4734 0.813210 GCATCTCCCTCCTTTCGCAG 60.813 60.000 0.00 0.00 0.00 5.18
4612 4753 3.190327 CACCCTCTCTATGTATCGCAGAG 59.810 52.174 0.00 0.00 43.63 3.35
4705 4846 1.153168 CATAAGTGTGGGGGCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
4756 4897 4.966805 TGGGTATAAACGAGAGATTCCCTT 59.033 41.667 0.00 0.00 34.14 3.95
4759 4900 5.532664 AGTGGGTATAAACGAGAGATTCC 57.467 43.478 0.00 0.00 0.00 3.01
4884 5031 4.988540 TCATAACACAGGACGAAACTGAAG 59.011 41.667 11.48 6.95 39.24 3.02
5054 5201 3.315749 CGTAGTCTGATCTTCACCTACCC 59.684 52.174 0.00 0.00 28.99 3.69
5185 5334 5.221481 TGCATGAAGGTGTTCACAAAATGAT 60.221 36.000 0.00 0.00 45.58 2.45
5320 5469 1.801178 GAAAAACAGTCCTCTGCTCCG 59.199 52.381 0.00 0.00 44.77 4.63
5327 5476 6.258068 TCGAAAGAAGAAGAAAAACAGTCCTC 59.742 38.462 0.00 0.00 37.03 3.71
5350 5499 8.462143 TTCTTTAAGTGTGCTATCTAGTTTCG 57.538 34.615 0.00 0.00 0.00 3.46
5373 5522 3.749404 TGCAAAACGTACACAGTGTTTC 58.251 40.909 12.53 5.07 34.92 2.78
5397 5546 4.752101 GGTATGACTGCATTTCGATTAGCT 59.248 41.667 0.00 0.00 35.94 3.32
5440 5591 9.542462 GGTGTTATCTGCTGAGTAACATAAATA 57.458 33.333 20.41 5.43 39.61 1.40
5872 6023 6.386654 CACAAAACACAACTTACCTGAAAGT 58.613 36.000 0.00 0.00 41.46 2.66
5929 6080 0.968405 TGCCCAAATGCTCCAACTTC 59.032 50.000 0.00 0.00 0.00 3.01
6179 6333 5.479724 AGTTGTTAGGACCTAGAACCTGTAC 59.520 44.000 16.51 12.94 37.68 2.90
6530 6686 1.611673 GCAAGGCTAGCAGGTTGAGAA 60.612 52.381 18.24 0.00 0.00 2.87
6602 6758 7.116736 CCAAAACCCTACAGAACTATACCAAT 58.883 38.462 0.00 0.00 0.00 3.16
6699 6855 3.181434 ACAATTGAAAGACAGGGTAGCCA 60.181 43.478 13.59 0.00 0.00 4.75
6835 6991 5.875910 CAGCTGAATGATCTCTCTCTTGTTT 59.124 40.000 8.42 0.00 0.00 2.83
6917 7073 9.239002 GTAGTAGTATATGAGCTGACAGTTTTG 57.761 37.037 3.99 0.00 0.00 2.44
6935 7091 5.699458 GCAAGTTGCAGGAAAAGTAGTAGTA 59.301 40.000 22.90 0.00 44.26 1.82
6936 7092 4.515567 GCAAGTTGCAGGAAAAGTAGTAGT 59.484 41.667 22.90 0.00 44.26 2.73
6998 7154 1.580845 GCAGATGCGATACCCATGCC 61.581 60.000 0.00 0.00 0.00 4.40
7051 7207 5.823045 CCAAGAGAAGACAGGTGTTAGTTTT 59.177 40.000 0.00 0.00 0.00 2.43
7052 7208 5.368989 CCAAGAGAAGACAGGTGTTAGTTT 58.631 41.667 0.00 0.00 0.00 2.66
7150 7306 5.253330 TGGTTTCCTGCTTTCTGGTATTAG 58.747 41.667 0.00 0.00 33.50 1.73
7427 7583 4.351874 TGGAAAGTTGACCCTACAAGAG 57.648 45.455 0.00 0.00 0.00 2.85
7701 7867 2.450476 AGTGACCTTCCAAATGCCATC 58.550 47.619 0.00 0.00 0.00 3.51
7755 7921 1.269988 TGCTTCAGTGAGAGTGTGAGC 60.270 52.381 4.15 4.15 33.07 4.26
7799 7965 5.145564 ACTGACTAGGTTCTGGTAAGTGAA 58.854 41.667 1.32 0.00 35.70 3.18
7800 7966 4.737578 ACTGACTAGGTTCTGGTAAGTGA 58.262 43.478 1.32 0.00 35.70 3.41
7801 7967 4.810790 CACTGACTAGGTTCTGGTAAGTG 58.189 47.826 12.45 12.45 44.16 3.16
7802 7968 3.258622 GCACTGACTAGGTTCTGGTAAGT 59.741 47.826 0.00 0.00 37.17 2.24
7816 7982 4.154942 AGAAAATGGAAATGGCACTGACT 58.845 39.130 0.00 0.00 0.00 3.41
7833 8006 9.760077 ACAGTAATAGAGAAGTCGAAAAGAAAA 57.240 29.630 0.00 0.00 0.00 2.29
7848 8021 5.872635 TCGGTTGTACGAACAGTAATAGAG 58.127 41.667 0.00 0.00 40.34 2.43
7865 8038 0.040514 TGCAATGCGTTCTTCGGTTG 60.041 50.000 0.00 0.00 40.26 3.77
7885 8058 5.470845 ACGTAAGATGCAAATTCTAGCAC 57.529 39.130 0.00 0.00 42.31 4.40
7908 8086 3.134623 TGACCTGCAAAGATGATCCGTAT 59.865 43.478 0.00 0.00 0.00 3.06
7972 8150 4.634133 GACGACGGGCACACGACA 62.634 66.667 9.44 0.00 37.61 4.35
8559 8741 3.700350 ACAGGGAGGGAGGGAGGG 61.700 72.222 0.00 0.00 0.00 4.30
8560 8742 1.886730 TACACAGGGAGGGAGGGAGG 61.887 65.000 0.00 0.00 0.00 4.30
8561 8743 0.266152 ATACACAGGGAGGGAGGGAG 59.734 60.000 0.00 0.00 0.00 4.30
8562 8744 0.722676 AATACACAGGGAGGGAGGGA 59.277 55.000 0.00 0.00 0.00 4.20
8563 8745 1.132500 GAATACACAGGGAGGGAGGG 58.868 60.000 0.00 0.00 0.00 4.30
8564 8746 1.765314 CAGAATACACAGGGAGGGAGG 59.235 57.143 0.00 0.00 0.00 4.30
8565 8747 2.472029 ACAGAATACACAGGGAGGGAG 58.528 52.381 0.00 0.00 0.00 4.30
8566 8748 2.642171 ACAGAATACACAGGGAGGGA 57.358 50.000 0.00 0.00 0.00 4.20
8775 8966 1.957877 CCGAACCAGAGGAGGAGATAC 59.042 57.143 0.00 0.00 0.00 2.24
8829 9020 1.970917 CTCGGCAGAACATGAACGGC 61.971 60.000 0.00 5.12 33.33 5.68
8855 9046 7.309499 CCTTCTACCTGTATATAGACCTGCAAG 60.309 44.444 0.00 0.00 0.00 4.01
8880 9075 7.047460 ACAGAGGAAATTCAATGCATAATCC 57.953 36.000 0.00 2.06 0.00 3.01
8930 9125 1.078143 GTCTGCCTCCCGCTCAAAT 60.078 57.895 0.00 0.00 38.78 2.32
8994 9190 9.676861 CTTGGAATATGCAGATTCTAATGGATA 57.323 33.333 26.49 9.43 36.20 2.59
9005 9201 7.831193 ACAGTTTACTTCTTGGAATATGCAGAT 59.169 33.333 0.00 0.00 0.00 2.90
9007 9203 7.383102 ACAGTTTACTTCTTGGAATATGCAG 57.617 36.000 0.00 0.00 0.00 4.41
9029 9225 4.218635 TGGTTGCTTGTCAAACTGTTTACA 59.781 37.500 5.31 8.15 42.81 2.41
9030 9226 4.739195 TGGTTGCTTGTCAAACTGTTTAC 58.261 39.130 5.31 5.84 42.81 2.01
9031 9227 4.676723 GCTGGTTGCTTGTCAAACTGTTTA 60.677 41.667 5.31 0.00 42.81 2.01
9032 9228 3.848726 CTGGTTGCTTGTCAAACTGTTT 58.151 40.909 0.00 0.00 42.81 2.83
9052 9248 3.975168 AACCTGGTCGTTTACTATGCT 57.025 42.857 0.00 0.00 0.00 3.79
9058 9254 5.428496 AAGCTTAAAACCTGGTCGTTTAC 57.572 39.130 0.00 0.00 34.89 2.01
9063 9263 3.816523 TGGTTAAGCTTAAAACCTGGTCG 59.183 43.478 24.77 0.00 44.55 4.79
9089 9289 9.048446 CACAATTCCAAGAAATCATTCTGTTTT 57.952 29.630 0.00 0.00 45.19 2.43
9097 9297 7.613585 TGTATTGCACAATTCCAAGAAATCAT 58.386 30.769 0.47 0.00 32.95 2.45
9243 9443 5.994250 AGGATAGTGTCACATTTATGCTGT 58.006 37.500 5.62 0.00 0.00 4.40
9250 9450 3.937814 TCGCAAGGATAGTGTCACATTT 58.062 40.909 5.62 0.00 38.47 2.32
9258 9458 2.076100 TGCTGTTTCGCAAGGATAGTG 58.924 47.619 0.00 0.00 36.89 2.74
9308 9509 1.451067 CTTCGGAGTAGACGGTGTCT 58.549 55.000 4.70 4.70 45.54 3.41
9336 9537 4.829064 ACAATGTTGTCGCTATGTTTGT 57.171 36.364 0.00 0.00 36.50 2.83
9344 9545 6.349033 GGGACTATTTAAACAATGTTGTCGCT 60.349 38.462 16.23 0.00 41.31 4.93
9347 9548 8.519526 TGATGGGACTATTTAAACAATGTTGTC 58.480 33.333 0.00 1.48 41.31 3.18
9395 9596 3.737559 ACACAAAGAGGATAATGCCCA 57.262 42.857 0.00 0.00 0.00 5.36
9397 9598 5.643379 TTGAACACAAAGAGGATAATGCC 57.357 39.130 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.