Multiple sequence alignment - TraesCS1D01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G249800 chr1D 100.000 2345 0 0 1 2345 342226738 342224394 0.000000e+00 4331.0
1 TraesCS1D01G249800 chr1D 100.000 520 0 0 2709 3228 342224030 342223511 0.000000e+00 961.0
2 TraesCS1D01G249800 chr1D 78.877 748 116 22 1 710 247820816 247821559 4.880000e-128 468.0
3 TraesCS1D01G249800 chr1D 91.000 100 8 1 2243 2342 491662330 491662428 2.020000e-27 134.0
4 TraesCS1D01G249800 chr1A 90.733 1802 115 18 480 2239 441933077 441931286 0.000000e+00 2355.0
5 TraesCS1D01G249800 chr1A 88.406 483 56 0 4 486 441942219 441941737 1.670000e-162 582.0
6 TraesCS1D01G249800 chr1B 92.812 640 27 10 1617 2239 458375705 458375068 0.000000e+00 909.0
7 TraesCS1D01G249800 chr1B 93.097 565 20 7 1010 1556 458376562 458375999 0.000000e+00 809.0
8 TraesCS1D01G249800 chr1B 77.135 761 151 11 46 788 354244650 354243895 1.380000e-113 420.0
9 TraesCS1D01G249800 chr1B 91.195 159 9 5 2766 2923 45756626 45756472 9.070000e-51 211.0
10 TraesCS1D01G249800 chr1B 90.196 102 10 0 2241 2342 669871308 669871409 2.020000e-27 134.0
11 TraesCS1D01G249800 chr1B 83.846 130 21 0 577 706 174362368 174362239 1.220000e-24 124.0
12 TraesCS1D01G249800 chr7D 87.500 512 64 0 1726 2237 20378739 20379250 2.770000e-165 592.0
13 TraesCS1D01G249800 chr7D 84.173 556 72 12 983 1534 20377882 20378425 2.850000e-145 525.0
14 TraesCS1D01G249800 chr7D 83.798 574 67 18 971 1536 20397317 20397872 3.690000e-144 521.0
15 TraesCS1D01G249800 chr7D 81.522 460 81 3 262 720 102959211 102959667 3.040000e-100 375.0
16 TraesCS1D01G249800 chr7D 88.757 169 8 10 2758 2923 558360280 558360440 2.540000e-46 196.0
17 TraesCS1D01G249800 chr6D 80.650 708 114 21 19 720 21908744 21908054 7.930000e-146 527.0
18 TraesCS1D01G249800 chr6D 77.447 705 127 11 1 680 455083783 455084480 3.020000e-105 392.0
19 TraesCS1D01G249800 chr6D 76.271 708 140 18 20 707 15706789 15707488 5.120000e-93 351.0
20 TraesCS1D01G249800 chr6D 90.964 166 7 8 2760 2923 48147833 48147674 1.950000e-52 217.0
21 TraesCS1D01G249800 chr6D 79.094 287 28 11 2879 3163 48147766 48147510 5.540000e-38 169.0
22 TraesCS1D01G249800 chr6D 85.385 130 19 0 577 706 192667569 192667698 5.620000e-28 135.0
23 TraesCS1D01G249800 chrUn 84.586 532 62 13 1011 1534 352522171 352521652 7.990000e-141 510.0
24 TraesCS1D01G249800 chr5B 92.614 352 24 2 2879 3228 473867770 473867419 3.720000e-139 505.0
25 TraesCS1D01G249800 chr5B 89.130 184 14 5 2752 2933 473867845 473867666 1.170000e-54 224.0
26 TraesCS1D01G249800 chr5B 87.879 99 9 2 2244 2342 61067346 61067251 2.630000e-21 113.0
27 TraesCS1D01G249800 chr7A 82.974 464 76 3 22 484 219163777 219163316 1.790000e-112 416.0
28 TraesCS1D01G249800 chr7A 83.566 286 37 9 2880 3163 215321785 215321508 3.190000e-65 259.0
29 TraesCS1D01G249800 chr7A 88.136 177 14 7 2760 2934 215321852 215321681 1.520000e-48 204.0
30 TraesCS1D01G249800 chr7A 81.215 181 29 4 305 483 24981792 24981969 1.210000e-29 141.0
31 TraesCS1D01G249800 chr4A 76.750 800 147 25 20 789 710673685 710674475 8.330000e-111 411.0
32 TraesCS1D01G249800 chr4A 84.965 286 33 6 2880 3164 635816934 635817210 6.820000e-72 281.0
33 TraesCS1D01G249800 chr4A 83.333 288 42 4 2879 3164 689679326 689679609 8.880000e-66 261.0
34 TraesCS1D01G249800 chr6B 75.307 814 141 29 87 857 692192081 692192877 5.160000e-88 335.0
35 TraesCS1D01G249800 chr6B 80.230 435 80 2 19 453 277121439 277121011 4.020000e-84 322.0
36 TraesCS1D01G249800 chr6B 93.137 102 7 0 2241 2342 694346986 694347087 2.010000e-32 150.0
37 TraesCS1D01G249800 chr5A 87.456 287 33 3 2880 3164 475309580 475309295 8.630000e-86 327.0
38 TraesCS1D01G249800 chr5A 79.147 422 80 7 68 483 556234828 556235247 5.270000e-73 285.0
39 TraesCS1D01G249800 chr5A 87.195 164 15 5 2769 2931 680350916 680350758 7.110000e-42 182.0
40 TraesCS1D01G249800 chr5A 86.614 127 12 4 2879 3004 680350858 680350736 5.620000e-28 135.0
41 TraesCS1D01G249800 chr2A 87.456 287 33 3 2880 3164 474805110 474805395 8.630000e-86 327.0
42 TraesCS1D01G249800 chr2A 86.411 287 36 3 2880 3164 75645813 75646098 8.700000e-81 311.0
43 TraesCS1D01G249800 chr2A 85.366 287 39 3 2880 3164 768660169 768660454 8.760000e-76 294.0
44 TraesCS1D01G249800 chr2A 89.888 178 12 6 2759 2934 474805041 474805214 1.170000e-54 224.0
45 TraesCS1D01G249800 chr2A 85.556 180 19 7 2758 2934 75645742 75645917 7.110000e-42 182.0
46 TraesCS1D01G249800 chr2B 75.846 650 127 18 86 720 23003655 23004289 1.460000e-78 303.0
47 TraesCS1D01G249800 chr2B 96.923 65 1 1 3164 3228 705932248 705932185 1.220000e-19 108.0
48 TraesCS1D01G249800 chr3B 87.251 251 28 3 2917 3164 40482786 40483035 1.900000e-72 283.0
49 TraesCS1D01G249800 chr3B 94.737 95 5 0 2244 2338 733327411 733327317 7.220000e-32 148.0
50 TraesCS1D01G249800 chr3B 88.235 119 11 3 2226 2344 811170545 811170430 4.340000e-29 139.0
51 TraesCS1D01G249800 chr3B 87.500 104 9 2 2240 2342 113935998 113935898 2.030000e-22 117.0
52 TraesCS1D01G249800 chr4D 80.000 325 54 5 19 340 15878338 15878654 2.500000e-56 230.0
53 TraesCS1D01G249800 chr3D 89.873 158 12 4 2769 2925 597475664 597475510 1.960000e-47 200.0
54 TraesCS1D01G249800 chr5D 93.878 98 6 0 2245 2342 549637449 549637546 7.220000e-32 148.0
55 TraesCS1D01G249800 chr5D 100.000 33 0 0 751 783 526469490 526469522 9.670000e-06 62.1
56 TraesCS1D01G249800 chr5D 100.000 28 0 0 751 778 429982309 429982282 6.000000e-03 52.8
57 TraesCS1D01G249800 chr2D 89.623 106 9 2 2241 2345 25342140 25342036 2.020000e-27 134.0
58 TraesCS1D01G249800 chr4B 82.178 101 14 4 719 816 179799271 179799172 2.060000e-12 84.2
59 TraesCS1D01G249800 chr3A 78.462 130 19 4 582 711 255937506 255937386 3.450000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G249800 chr1D 342223511 342226738 3227 True 2646.0 4331 100.0000 1 3228 2 chr1D.!!$R1 3227
1 TraesCS1D01G249800 chr1D 247820816 247821559 743 False 468.0 468 78.8770 1 710 1 chr1D.!!$F1 709
2 TraesCS1D01G249800 chr1A 441931286 441933077 1791 True 2355.0 2355 90.7330 480 2239 1 chr1A.!!$R1 1759
3 TraesCS1D01G249800 chr1B 458375068 458376562 1494 True 859.0 909 92.9545 1010 2239 2 chr1B.!!$R4 1229
4 TraesCS1D01G249800 chr1B 354243895 354244650 755 True 420.0 420 77.1350 46 788 1 chr1B.!!$R3 742
5 TraesCS1D01G249800 chr7D 20377882 20379250 1368 False 558.5 592 85.8365 983 2237 2 chr7D.!!$F4 1254
6 TraesCS1D01G249800 chr7D 20397317 20397872 555 False 521.0 521 83.7980 971 1536 1 chr7D.!!$F1 565
7 TraesCS1D01G249800 chr6D 21908054 21908744 690 True 527.0 527 80.6500 19 720 1 chr6D.!!$R1 701
8 TraesCS1D01G249800 chr6D 455083783 455084480 697 False 392.0 392 77.4470 1 680 1 chr6D.!!$F3 679
9 TraesCS1D01G249800 chr6D 15706789 15707488 699 False 351.0 351 76.2710 20 707 1 chr6D.!!$F1 687
10 TraesCS1D01G249800 chrUn 352521652 352522171 519 True 510.0 510 84.5860 1011 1534 1 chrUn.!!$R1 523
11 TraesCS1D01G249800 chr4A 710673685 710674475 790 False 411.0 411 76.7500 20 789 1 chr4A.!!$F3 769
12 TraesCS1D01G249800 chr6B 692192081 692192877 796 False 335.0 335 75.3070 87 857 1 chr6B.!!$F1 770
13 TraesCS1D01G249800 chr2B 23003655 23004289 634 False 303.0 303 75.8460 86 720 1 chr2B.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 875 0.037975 AAACGGACGTGGTAGCGAAT 60.038 50.0 0.0 0.0 35.59 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2834 0.033109 ATACTTTGCTTCTGGCCCCC 60.033 55.0 0.0 0.0 40.92 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.223800 GGCGGATGTTGCAGATGA 57.776 55.556 0.00 0.00 0.00 2.92
43 44 2.649034 GAGTCGACCAACGCCTCA 59.351 61.111 13.01 0.00 44.76 3.86
61 62 2.882677 ATGCTCTGCCACGTCCACA 61.883 57.895 0.00 0.00 0.00 4.17
62 63 3.044305 GCTCTGCCACGTCCACAC 61.044 66.667 0.00 0.00 0.00 3.82
273 313 1.162800 GCCAGATCGTCCTCCATTGC 61.163 60.000 0.00 0.00 0.00 3.56
274 314 0.178767 CCAGATCGTCCTCCATTGCA 59.821 55.000 0.00 0.00 0.00 4.08
278 318 2.930385 ATCGTCCTCCATTGCAGCGG 62.930 60.000 0.00 0.00 0.00 5.52
333 373 1.660560 GCAGCAATGACGGCCATCTT 61.661 55.000 2.24 0.00 33.53 2.40
396 437 3.083349 CGAGGAGGCCATGGTGGA 61.083 66.667 14.67 0.00 40.96 4.02
454 496 2.507854 GCGGCTATGGTCAGGGCTA 61.508 63.158 0.00 0.00 0.00 3.93
579 647 2.879002 TACAACCGTGGTGTCGTTTA 57.121 45.000 0.00 0.00 0.00 2.01
791 873 0.664166 GAAACGGACGTGGTAGCGAA 60.664 55.000 0.00 0.00 35.59 4.70
792 875 0.037975 AAACGGACGTGGTAGCGAAT 60.038 50.000 0.00 0.00 35.59 3.34
810 893 2.916181 GGACGCCCGTATAGCCCT 60.916 66.667 0.00 0.00 0.00 5.19
870 954 8.106462 TCTAGACCACCAAATGAATCAATACAA 58.894 33.333 0.00 0.00 0.00 2.41
875 959 8.036575 ACCACCAAATGAATCAATACAAATCTG 58.963 33.333 0.00 0.00 0.00 2.90
877 961 8.865978 CACCAAATGAATCAATACAAATCTGTG 58.134 33.333 0.00 0.00 36.96 3.66
895 979 2.031560 TGTGTTGAATGACAGAACACGC 59.968 45.455 16.85 4.64 40.83 5.34
898 982 0.107643 TGAATGACAGAACACGCCCA 59.892 50.000 0.00 0.00 0.00 5.36
904 988 1.893808 CAGAACACGCCCAAGCAGT 60.894 57.895 0.00 0.00 39.83 4.40
909 993 4.189580 ACGCCCAAGCAGTGTGGT 62.190 61.111 0.00 0.00 39.83 4.16
921 1005 2.866460 GCAGTGTGGTTCAGACGTATGT 60.866 50.000 10.41 0.00 32.70 2.29
923 1007 1.459592 GTGTGGTTCAGACGTATGTGC 59.540 52.381 10.41 4.29 0.00 4.57
1002 1111 2.879026 CCATCACCTCATTCAGCAGATG 59.121 50.000 0.00 0.00 34.22 2.90
1008 1117 2.809119 CCTCATTCAGCAGATGAGATGC 59.191 50.000 19.46 0.00 43.18 3.91
1131 1257 0.670546 CGACGAACCAGAACCATGCT 60.671 55.000 0.00 0.00 0.00 3.79
1546 1702 9.931210 GCAGGTAGTGTTGTTGTATTAATTATC 57.069 33.333 0.00 0.00 0.00 1.75
1600 2008 9.927081 AAGGACATAAAAGAATACAATCCAGAT 57.073 29.630 0.00 0.00 0.00 2.90
1601 2009 9.566432 AGGACATAAAAGAATACAATCCAGATC 57.434 33.333 0.00 0.00 0.00 2.75
1602 2010 9.566432 GGACATAAAAGAATACAATCCAGATCT 57.434 33.333 0.00 0.00 0.00 2.75
1646 2054 2.355132 CAGCTCTCCTTGTGAATGATGC 59.645 50.000 0.00 0.00 0.00 3.91
1685 2093 9.474313 AACCTTGAAATAAAGTAAGCCATGATA 57.526 29.630 0.00 0.00 0.00 2.15
1697 2105 5.722021 AAGCCATGATAACGTTTTTCCTT 57.278 34.783 5.91 0.88 0.00 3.36
1795 2361 1.854743 CGTGCTCAACCTGACATATCG 59.145 52.381 0.00 0.00 0.00 2.92
1846 2412 3.943691 ACAAGTAACGGCGGGCCA 61.944 61.111 13.24 0.00 35.37 5.36
1942 2508 0.392336 AGATGCTTCAGGATCCGCTC 59.608 55.000 5.98 3.84 42.90 5.03
2027 2593 2.096218 GGTGTCGTTGCAGAGATTGTTC 60.096 50.000 0.00 0.00 0.00 3.18
2243 2809 7.469537 ACTTTCTAGTGATGCTAGTTACACT 57.530 36.000 16.93 16.93 45.65 3.55
2244 2810 7.316640 ACTTTCTAGTGATGCTAGTTACACTG 58.683 38.462 19.83 13.25 45.65 3.66
2245 2811 5.836821 TCTAGTGATGCTAGTTACACTGG 57.163 43.478 19.83 17.93 45.65 4.00
2250 2816 3.347411 GCTAGTTACACTGGCGGAG 57.653 57.895 0.00 0.00 42.67 4.63
2264 2830 2.548178 CGGAGCTTGACTGCAATGT 58.452 52.632 0.00 0.00 36.28 2.71
2265 2831 0.445436 CGGAGCTTGACTGCAATGTC 59.555 55.000 0.00 0.00 36.28 3.06
2266 2832 1.527034 GGAGCTTGACTGCAATGTCA 58.473 50.000 4.76 4.76 44.17 3.58
2267 2833 1.467734 GGAGCTTGACTGCAATGTCAG 59.532 52.381 8.59 5.42 46.02 3.51
2268 2834 1.467734 GAGCTTGACTGCAATGTCAGG 59.532 52.381 12.27 12.27 46.02 3.86
2269 2835 0.524862 GCTTGACTGCAATGTCAGGG 59.475 55.000 16.60 11.37 46.02 4.45
2270 2836 1.171308 CTTGACTGCAATGTCAGGGG 58.829 55.000 9.56 2.36 46.02 4.79
2271 2837 0.251297 TTGACTGCAATGTCAGGGGG 60.251 55.000 8.59 0.00 46.02 5.40
2285 2851 2.118294 GGGGGCCAGAAGCAAAGT 59.882 61.111 4.39 0.00 46.50 2.66
2286 2852 1.382629 GGGGGCCAGAAGCAAAGTA 59.617 57.895 4.39 0.00 46.50 2.24
2287 2853 0.033109 GGGGGCCAGAAGCAAAGTAT 60.033 55.000 4.39 0.00 46.50 2.12
2288 2854 1.214424 GGGGGCCAGAAGCAAAGTATA 59.786 52.381 4.39 0.00 46.50 1.47
2289 2855 2.298610 GGGGCCAGAAGCAAAGTATAC 58.701 52.381 4.39 0.00 46.50 1.47
2290 2856 2.356741 GGGGCCAGAAGCAAAGTATACA 60.357 50.000 4.39 0.00 46.50 2.29
2291 2857 3.555966 GGGCCAGAAGCAAAGTATACAT 58.444 45.455 4.39 0.00 46.50 2.29
2292 2858 3.316308 GGGCCAGAAGCAAAGTATACATG 59.684 47.826 4.39 5.06 46.50 3.21
2293 2859 3.947834 GGCCAGAAGCAAAGTATACATGT 59.052 43.478 2.69 2.69 46.50 3.21
2294 2860 4.399303 GGCCAGAAGCAAAGTATACATGTT 59.601 41.667 2.30 0.00 46.50 2.71
2295 2861 5.105756 GGCCAGAAGCAAAGTATACATGTTT 60.106 40.000 2.30 7.91 46.50 2.83
2296 2862 6.094881 GGCCAGAAGCAAAGTATACATGTTTA 59.905 38.462 2.30 0.00 46.50 2.01
2297 2863 7.201821 GGCCAGAAGCAAAGTATACATGTTTAT 60.202 37.037 2.30 3.03 46.50 1.40
2298 2864 8.836413 GCCAGAAGCAAAGTATACATGTTTATA 58.164 33.333 2.30 0.00 42.97 0.98
2301 2867 9.561069 AGAAGCAAAGTATACATGTTTATAGGG 57.439 33.333 2.30 0.00 0.00 3.53
2302 2868 8.691661 AAGCAAAGTATACATGTTTATAGGGG 57.308 34.615 2.30 0.00 0.00 4.79
2303 2869 6.715264 AGCAAAGTATACATGTTTATAGGGGC 59.285 38.462 2.30 3.17 0.00 5.80
2304 2870 6.715264 GCAAAGTATACATGTTTATAGGGGCT 59.285 38.462 2.30 0.00 0.00 5.19
2305 2871 7.881232 GCAAAGTATACATGTTTATAGGGGCTA 59.119 37.037 2.30 0.00 0.00 3.93
2306 2872 9.787435 CAAAGTATACATGTTTATAGGGGCTAA 57.213 33.333 2.30 0.00 0.00 3.09
2308 2874 9.959721 AAGTATACATGTTTATAGGGGCTAATG 57.040 33.333 2.30 0.00 0.00 1.90
2309 2875 9.333961 AGTATACATGTTTATAGGGGCTAATGA 57.666 33.333 2.30 0.00 0.00 2.57
2310 2876 9.601217 GTATACATGTTTATAGGGGCTAATGAG 57.399 37.037 2.30 0.00 0.00 2.90
2311 2877 6.763715 ACATGTTTATAGGGGCTAATGAGA 57.236 37.500 0.00 0.00 0.00 3.27
2312 2878 7.149202 ACATGTTTATAGGGGCTAATGAGAA 57.851 36.000 0.00 0.00 0.00 2.87
2313 2879 7.759607 ACATGTTTATAGGGGCTAATGAGAAT 58.240 34.615 0.00 0.00 0.00 2.40
2314 2880 8.890472 ACATGTTTATAGGGGCTAATGAGAATA 58.110 33.333 0.00 0.00 0.00 1.75
2315 2881 9.167311 CATGTTTATAGGGGCTAATGAGAATAC 57.833 37.037 0.00 0.00 0.00 1.89
2316 2882 8.506196 TGTTTATAGGGGCTAATGAGAATACT 57.494 34.615 0.00 0.00 0.00 2.12
2317 2883 8.945193 TGTTTATAGGGGCTAATGAGAATACTT 58.055 33.333 0.00 0.00 0.00 2.24
2318 2884 9.794719 GTTTATAGGGGCTAATGAGAATACTTT 57.205 33.333 0.00 0.00 0.00 2.66
2319 2885 9.793259 TTTATAGGGGCTAATGAGAATACTTTG 57.207 33.333 0.00 0.00 0.00 2.77
2320 2886 5.717119 AGGGGCTAATGAGAATACTTTGT 57.283 39.130 0.00 0.00 0.00 2.83
2321 2887 6.079712 AGGGGCTAATGAGAATACTTTGTT 57.920 37.500 0.00 0.00 0.00 2.83
2322 2888 6.122964 AGGGGCTAATGAGAATACTTTGTTC 58.877 40.000 0.00 0.00 0.00 3.18
2323 2889 6.069381 AGGGGCTAATGAGAATACTTTGTTCT 60.069 38.462 0.00 0.00 38.57 3.01
2324 2890 7.127339 AGGGGCTAATGAGAATACTTTGTTCTA 59.873 37.037 0.00 0.00 36.13 2.10
2325 2891 7.773690 GGGGCTAATGAGAATACTTTGTTCTAA 59.226 37.037 0.00 0.00 36.13 2.10
2326 2892 9.343539 GGGCTAATGAGAATACTTTGTTCTAAT 57.656 33.333 0.00 0.00 36.13 1.73
2333 2899 9.679661 TGAGAATACTTTGTTCTAATTATGCCA 57.320 29.630 0.00 0.00 36.13 4.92
2334 2900 9.937175 GAGAATACTTTGTTCTAATTATGCCAC 57.063 33.333 0.00 0.00 36.13 5.01
2335 2901 8.903820 AGAATACTTTGTTCTAATTATGCCACC 58.096 33.333 0.00 0.00 34.32 4.61
2336 2902 5.914898 ACTTTGTTCTAATTATGCCACCC 57.085 39.130 0.00 0.00 0.00 4.61
2337 2903 5.580022 ACTTTGTTCTAATTATGCCACCCT 58.420 37.500 0.00 0.00 0.00 4.34
2338 2904 6.727394 ACTTTGTTCTAATTATGCCACCCTA 58.273 36.000 0.00 0.00 0.00 3.53
2339 2905 7.179269 ACTTTGTTCTAATTATGCCACCCTAA 58.821 34.615 0.00 0.00 0.00 2.69
2340 2906 7.672239 ACTTTGTTCTAATTATGCCACCCTAAA 59.328 33.333 0.00 0.00 0.00 1.85
2341 2907 8.423906 TTTGTTCTAATTATGCCACCCTAAAA 57.576 30.769 0.00 0.00 0.00 1.52
2342 2908 7.639113 TGTTCTAATTATGCCACCCTAAAAG 57.361 36.000 0.00 0.00 0.00 2.27
2343 2909 7.406916 TGTTCTAATTATGCCACCCTAAAAGA 58.593 34.615 0.00 0.00 0.00 2.52
2344 2910 7.891183 TGTTCTAATTATGCCACCCTAAAAGAA 59.109 33.333 0.00 0.00 0.00 2.52
2749 3315 9.634163 AATCATAATATATGCATTGCAGTTGTG 57.366 29.630 17.52 15.26 43.65 3.33
2750 3316 8.393671 TCATAATATATGCATTGCAGTTGTGA 57.606 30.769 17.52 16.91 43.65 3.58
2751 3317 9.016438 TCATAATATATGCATTGCAGTTGTGAT 57.984 29.630 17.52 4.05 43.65 3.06
2752 3318 9.634163 CATAATATATGCATTGCAGTTGTGATT 57.366 29.630 17.52 11.77 43.65 2.57
2755 3321 9.467258 AATATATGCATTGCAGTTGTGATTTAC 57.533 29.630 17.52 0.00 43.65 2.01
2756 3322 3.911868 TGCATTGCAGTTGTGATTTACC 58.088 40.909 7.38 0.00 33.32 2.85
2757 3323 3.573538 TGCATTGCAGTTGTGATTTACCT 59.426 39.130 7.38 0.00 33.32 3.08
2758 3324 4.764308 TGCATTGCAGTTGTGATTTACCTA 59.236 37.500 7.38 0.00 33.32 3.08
2759 3325 5.418524 TGCATTGCAGTTGTGATTTACCTAT 59.581 36.000 7.38 0.00 33.32 2.57
2760 3326 6.071447 TGCATTGCAGTTGTGATTTACCTATT 60.071 34.615 7.38 0.00 33.32 1.73
2761 3327 7.121907 TGCATTGCAGTTGTGATTTACCTATTA 59.878 33.333 7.38 0.00 33.32 0.98
2762 3328 7.973388 GCATTGCAGTTGTGATTTACCTATTAA 59.027 33.333 3.15 0.00 0.00 1.40
2763 3329 9.853555 CATTGCAGTTGTGATTTACCTATTAAA 57.146 29.630 0.00 0.00 34.08 1.52
2784 3350 6.699575 AAATTATGGACTGTGATAACTGGC 57.300 37.500 0.00 0.00 0.00 4.85
2785 3351 4.835284 TTATGGACTGTGATAACTGGCA 57.165 40.909 0.00 0.00 0.00 4.92
2786 3352 3.719268 ATGGACTGTGATAACTGGCAA 57.281 42.857 0.00 0.00 0.00 4.52
2787 3353 2.778299 TGGACTGTGATAACTGGCAAC 58.222 47.619 0.00 0.00 0.00 4.17
2788 3354 2.371841 TGGACTGTGATAACTGGCAACT 59.628 45.455 0.00 0.00 37.61 3.16
2789 3355 2.744202 GGACTGTGATAACTGGCAACTG 59.256 50.000 0.00 0.00 42.06 3.16
2801 3367 3.484524 GCAACTGTGTGCCAGATTG 57.515 52.632 0.00 0.00 44.49 2.67
2802 3368 0.665369 GCAACTGTGTGCCAGATTGC 60.665 55.000 11.14 11.14 44.49 3.56
2803 3369 0.669619 CAACTGTGTGCCAGATTGCA 59.330 50.000 0.00 0.00 44.49 4.08
2804 3370 1.067364 CAACTGTGTGCCAGATTGCAA 59.933 47.619 0.00 0.00 44.49 4.08
2805 3371 1.401761 ACTGTGTGCCAGATTGCAAA 58.598 45.000 1.71 0.00 44.49 3.68
2806 3372 1.965643 ACTGTGTGCCAGATTGCAAAT 59.034 42.857 1.71 0.00 44.49 2.32
2807 3373 2.029649 ACTGTGTGCCAGATTGCAAATC 60.030 45.455 1.71 1.84 44.49 2.17
2808 3374 1.273048 TGTGTGCCAGATTGCAAATCC 59.727 47.619 1.71 0.00 44.11 3.01
2809 3375 1.273048 GTGTGCCAGATTGCAAATCCA 59.727 47.619 1.71 0.00 44.11 3.41
2810 3376 1.273048 TGTGCCAGATTGCAAATCCAC 59.727 47.619 1.71 7.59 44.11 4.02
2811 3377 0.896923 TGCCAGATTGCAAATCCACC 59.103 50.000 1.71 0.00 38.56 4.61
2812 3378 0.896923 GCCAGATTGCAAATCCACCA 59.103 50.000 1.71 0.00 0.00 4.17
2813 3379 1.404583 GCCAGATTGCAAATCCACCAC 60.405 52.381 1.71 0.00 0.00 4.16
2814 3380 1.894466 CCAGATTGCAAATCCACCACA 59.106 47.619 1.71 0.00 0.00 4.17
2815 3381 2.353011 CCAGATTGCAAATCCACCACAC 60.353 50.000 1.71 0.00 0.00 3.82
2816 3382 1.895131 AGATTGCAAATCCACCACACC 59.105 47.619 1.71 0.00 0.00 4.16
2817 3383 0.975887 ATTGCAAATCCACCACACCC 59.024 50.000 1.71 0.00 0.00 4.61
2818 3384 1.118356 TTGCAAATCCACCACACCCC 61.118 55.000 0.00 0.00 0.00 4.95
2819 3385 2.282783 GCAAATCCACCACACCCCC 61.283 63.158 0.00 0.00 0.00 5.40
2820 3386 1.464722 CAAATCCACCACACCCCCT 59.535 57.895 0.00 0.00 0.00 4.79
2821 3387 0.611896 CAAATCCACCACACCCCCTC 60.612 60.000 0.00 0.00 0.00 4.30
2822 3388 2.137177 AAATCCACCACACCCCCTCG 62.137 60.000 0.00 0.00 0.00 4.63
2823 3389 3.864983 ATCCACCACACCCCCTCGT 62.865 63.158 0.00 0.00 0.00 4.18
2824 3390 4.329545 CCACCACACCCCCTCGTG 62.330 72.222 0.00 0.00 39.75 4.35
2839 3405 3.361977 GTGCCGCACGAAACCCAT 61.362 61.111 7.96 0.00 0.00 4.00
2840 3406 3.053291 TGCCGCACGAAACCCATC 61.053 61.111 0.00 0.00 0.00 3.51
2841 3407 3.810896 GCCGCACGAAACCCATCC 61.811 66.667 0.00 0.00 0.00 3.51
2842 3408 3.131478 CCGCACGAAACCCATCCC 61.131 66.667 0.00 0.00 0.00 3.85
2843 3409 2.046314 CGCACGAAACCCATCCCT 60.046 61.111 0.00 0.00 0.00 4.20
2844 3410 1.674322 CGCACGAAACCCATCCCTT 60.674 57.895 0.00 0.00 0.00 3.95
2845 3411 1.644786 CGCACGAAACCCATCCCTTC 61.645 60.000 0.00 0.00 0.00 3.46
2846 3412 0.322546 GCACGAAACCCATCCCTTCT 60.323 55.000 0.00 0.00 0.00 2.85
2847 3413 1.886655 GCACGAAACCCATCCCTTCTT 60.887 52.381 0.00 0.00 0.00 2.52
2848 3414 2.084546 CACGAAACCCATCCCTTCTTC 58.915 52.381 0.00 0.00 0.00 2.87
2849 3415 1.985895 ACGAAACCCATCCCTTCTTCT 59.014 47.619 0.00 0.00 0.00 2.85
2850 3416 2.027100 ACGAAACCCATCCCTTCTTCTC 60.027 50.000 0.00 0.00 0.00 2.87
2851 3417 2.681097 CGAAACCCATCCCTTCTTCTCC 60.681 54.545 0.00 0.00 0.00 3.71
2852 3418 2.367947 AACCCATCCCTTCTTCTCCT 57.632 50.000 0.00 0.00 0.00 3.69
2853 3419 1.589414 ACCCATCCCTTCTTCTCCTG 58.411 55.000 0.00 0.00 0.00 3.86
2854 3420 1.081174 ACCCATCCCTTCTTCTCCTGA 59.919 52.381 0.00 0.00 0.00 3.86
2855 3421 2.294127 ACCCATCCCTTCTTCTCCTGAT 60.294 50.000 0.00 0.00 0.00 2.90
2856 3422 2.782341 CCCATCCCTTCTTCTCCTGATT 59.218 50.000 0.00 0.00 0.00 2.57
2857 3423 3.203934 CCCATCCCTTCTTCTCCTGATTT 59.796 47.826 0.00 0.00 0.00 2.17
2858 3424 4.325658 CCCATCCCTTCTTCTCCTGATTTT 60.326 45.833 0.00 0.00 0.00 1.82
2859 3425 4.886489 CCATCCCTTCTTCTCCTGATTTTC 59.114 45.833 0.00 0.00 0.00 2.29
2860 3426 5.339861 CCATCCCTTCTTCTCCTGATTTTCT 60.340 44.000 0.00 0.00 0.00 2.52
2861 3427 5.171339 TCCCTTCTTCTCCTGATTTTCTG 57.829 43.478 0.00 0.00 0.00 3.02
2862 3428 4.018960 TCCCTTCTTCTCCTGATTTTCTGG 60.019 45.833 0.00 0.00 36.89 3.86
2863 3429 4.268359 CCTTCTTCTCCTGATTTTCTGGG 58.732 47.826 1.25 0.00 36.30 4.45
2864 3430 3.356529 TCTTCTCCTGATTTTCTGGGC 57.643 47.619 1.25 0.00 36.30 5.36
2865 3431 2.025887 TCTTCTCCTGATTTTCTGGGCC 60.026 50.000 0.00 0.00 36.30 5.80
2866 3432 1.371467 TCTCCTGATTTTCTGGGCCA 58.629 50.000 5.85 5.85 36.30 5.36
2867 3433 1.925255 TCTCCTGATTTTCTGGGCCAT 59.075 47.619 6.72 0.00 36.30 4.40
2868 3434 2.092212 TCTCCTGATTTTCTGGGCCATC 60.092 50.000 6.72 0.93 36.30 3.51
2869 3435 1.063717 TCCTGATTTTCTGGGCCATCC 60.064 52.381 6.72 0.00 36.30 3.51
2895 3461 4.096003 CCGCACGAACCCATCCCT 62.096 66.667 0.00 0.00 0.00 4.20
2896 3462 2.046314 CGCACGAACCCATCCCTT 60.046 61.111 0.00 0.00 0.00 3.95
2897 3463 1.674322 CGCACGAACCCATCCCTTT 60.674 57.895 0.00 0.00 0.00 3.11
2898 3464 1.241315 CGCACGAACCCATCCCTTTT 61.241 55.000 0.00 0.00 0.00 2.27
2899 3465 0.966179 GCACGAACCCATCCCTTTTT 59.034 50.000 0.00 0.00 0.00 1.94
2900 3466 1.067846 GCACGAACCCATCCCTTTTTC 60.068 52.381 0.00 0.00 0.00 2.29
2901 3467 2.514803 CACGAACCCATCCCTTTTTCT 58.485 47.619 0.00 0.00 0.00 2.52
2902 3468 2.488153 CACGAACCCATCCCTTTTTCTC 59.512 50.000 0.00 0.00 0.00 2.87
2903 3469 2.092323 CGAACCCATCCCTTTTTCTCC 58.908 52.381 0.00 0.00 0.00 3.71
2904 3470 2.290960 CGAACCCATCCCTTTTTCTCCT 60.291 50.000 0.00 0.00 0.00 3.69
2905 3471 2.907458 ACCCATCCCTTTTTCTCCTG 57.093 50.000 0.00 0.00 0.00 3.86
2906 3472 2.358258 ACCCATCCCTTTTTCTCCTGA 58.642 47.619 0.00 0.00 0.00 3.86
2907 3473 2.929043 ACCCATCCCTTTTTCTCCTGAT 59.071 45.455 0.00 0.00 0.00 2.90
2908 3474 3.337909 ACCCATCCCTTTTTCTCCTGATT 59.662 43.478 0.00 0.00 0.00 2.57
2909 3475 4.202825 ACCCATCCCTTTTTCTCCTGATTT 60.203 41.667 0.00 0.00 0.00 2.17
2910 3476 4.779489 CCCATCCCTTTTTCTCCTGATTTT 59.221 41.667 0.00 0.00 0.00 1.82
2911 3477 5.105187 CCCATCCCTTTTTCTCCTGATTTTC 60.105 44.000 0.00 0.00 0.00 2.29
2912 3478 5.718607 CCATCCCTTTTTCTCCTGATTTTCT 59.281 40.000 0.00 0.00 0.00 2.52
2913 3479 6.350780 CCATCCCTTTTTCTCCTGATTTTCTG 60.351 42.308 0.00 0.00 0.00 3.02
2914 3480 5.079643 TCCCTTTTTCTCCTGATTTTCTGG 58.920 41.667 0.00 0.00 36.89 3.86
2915 3481 4.221482 CCCTTTTTCTCCTGATTTTCTGGG 59.779 45.833 1.25 0.00 36.30 4.45
2916 3482 4.322273 CCTTTTTCTCCTGATTTTCTGGGC 60.322 45.833 1.25 0.00 36.30 5.36
2917 3483 2.514458 TTCTCCTGATTTTCTGGGCC 57.486 50.000 0.00 0.00 36.30 5.80
2918 3484 1.371467 TCTCCTGATTTTCTGGGCCA 58.629 50.000 5.85 5.85 36.30 5.36
2919 3485 1.925255 TCTCCTGATTTTCTGGGCCAT 59.075 47.619 6.72 0.00 36.30 4.40
2920 3486 2.092212 TCTCCTGATTTTCTGGGCCATC 60.092 50.000 6.72 0.93 36.30 3.51
2921 3487 1.063717 TCCTGATTTTCTGGGCCATCC 60.064 52.381 6.72 0.00 36.30 3.51
2946 3512 4.452733 CCCGCACGAACCCCTCTC 62.453 72.222 0.00 0.00 0.00 3.20
2947 3513 3.382832 CCGCACGAACCCCTCTCT 61.383 66.667 0.00 0.00 0.00 3.10
2948 3514 2.657237 CGCACGAACCCCTCTCTT 59.343 61.111 0.00 0.00 0.00 2.85
2949 3515 1.446272 CGCACGAACCCCTCTCTTC 60.446 63.158 0.00 0.00 0.00 2.87
2950 3516 1.878656 CGCACGAACCCCTCTCTTCT 61.879 60.000 0.00 0.00 0.00 2.85
2951 3517 0.108567 GCACGAACCCCTCTCTTCTC 60.109 60.000 0.00 0.00 0.00 2.87
2952 3518 0.533032 CACGAACCCCTCTCTTCTCC 59.467 60.000 0.00 0.00 0.00 3.71
2953 3519 0.410270 ACGAACCCCTCTCTTCTCCT 59.590 55.000 0.00 0.00 0.00 3.69
2954 3520 0.820871 CGAACCCCTCTCTTCTCCTG 59.179 60.000 0.00 0.00 0.00 3.86
2955 3521 1.617263 CGAACCCCTCTCTTCTCCTGA 60.617 57.143 0.00 0.00 0.00 3.86
2956 3522 2.758130 GAACCCCTCTCTTCTCCTGAT 58.242 52.381 0.00 0.00 0.00 2.90
2957 3523 2.959421 ACCCCTCTCTTCTCCTGATT 57.041 50.000 0.00 0.00 0.00 2.57
2958 3524 3.213160 ACCCCTCTCTTCTCCTGATTT 57.787 47.619 0.00 0.00 0.00 2.17
2959 3525 3.536287 ACCCCTCTCTTCTCCTGATTTT 58.464 45.455 0.00 0.00 0.00 1.82
2960 3526 4.699994 ACCCCTCTCTTCTCCTGATTTTA 58.300 43.478 0.00 0.00 0.00 1.52
2961 3527 5.292815 ACCCCTCTCTTCTCCTGATTTTAT 58.707 41.667 0.00 0.00 0.00 1.40
2962 3528 5.131809 ACCCCTCTCTTCTCCTGATTTTATG 59.868 44.000 0.00 0.00 0.00 1.90
2963 3529 5.455899 CCCCTCTCTTCTCCTGATTTTATGG 60.456 48.000 0.00 0.00 0.00 2.74
2964 3530 5.455899 CCCTCTCTTCTCCTGATTTTATGGG 60.456 48.000 0.00 0.00 0.00 4.00
2965 3531 5.041191 TCTCTTCTCCTGATTTTATGGGC 57.959 43.478 0.00 0.00 0.00 5.36
2966 3532 4.140536 CTCTTCTCCTGATTTTATGGGCC 58.859 47.826 0.00 0.00 0.00 5.80
2967 3533 3.527253 TCTTCTCCTGATTTTATGGGCCA 59.473 43.478 9.61 9.61 0.00 5.36
2968 3534 3.297134 TCTCCTGATTTTATGGGCCAC 57.703 47.619 9.28 0.00 0.00 5.01
2969 3535 2.091885 TCTCCTGATTTTATGGGCCACC 60.092 50.000 9.28 0.00 37.24 4.61
2970 3536 1.063266 TCCTGATTTTATGGGCCACCC 60.063 52.381 9.28 0.00 45.71 4.61
3008 3574 2.514824 GGCCTGTCCCGATTCTGC 60.515 66.667 0.00 0.00 0.00 4.26
3009 3575 2.892425 GCCTGTCCCGATTCTGCG 60.892 66.667 0.00 0.00 0.00 5.18
3010 3576 2.892425 CCTGTCCCGATTCTGCGC 60.892 66.667 0.00 0.00 0.00 6.09
3011 3577 2.125552 CTGTCCCGATTCTGCGCA 60.126 61.111 10.98 10.98 0.00 6.09
3012 3578 2.434185 TGTCCCGATTCTGCGCAC 60.434 61.111 5.66 0.00 0.00 5.34
3013 3579 2.434185 GTCCCGATTCTGCGCACA 60.434 61.111 5.66 0.00 0.00 4.57
3014 3580 2.434185 TCCCGATTCTGCGCACAC 60.434 61.111 5.66 0.00 0.00 3.82
3015 3581 2.741985 CCCGATTCTGCGCACACA 60.742 61.111 5.66 0.00 0.00 3.72
3016 3582 2.476051 CCGATTCTGCGCACACAC 59.524 61.111 5.66 0.00 0.00 3.82
3017 3583 2.094539 CGATTCTGCGCACACACG 59.905 61.111 5.66 6.97 0.00 4.49
3018 3584 2.657757 CGATTCTGCGCACACACGT 61.658 57.895 5.66 0.00 34.88 4.49
3019 3585 1.154599 GATTCTGCGCACACACGTG 60.155 57.895 15.48 15.48 46.56 4.49
3020 3586 1.831389 GATTCTGCGCACACACGTGT 61.831 55.000 17.22 17.22 45.50 4.49
3029 3595 3.699671 CACACGTGTGCAGTTCGA 58.300 55.556 33.52 0.00 39.39 3.71
3030 3596 2.002899 CACACGTGTGCAGTTCGAA 58.997 52.632 33.52 0.00 39.39 3.71
3031 3597 0.371989 CACACGTGTGCAGTTCGAAA 59.628 50.000 33.52 0.00 39.39 3.46
3032 3598 1.080298 ACACGTGTGCAGTTCGAAAA 58.920 45.000 22.71 0.00 0.00 2.29
3033 3599 1.465387 ACACGTGTGCAGTTCGAAAAA 59.535 42.857 22.71 0.00 0.00 1.94
3062 3628 5.757850 AAAAATGCGATGGGAGAGTAATC 57.242 39.130 0.00 0.00 0.00 1.75
3063 3629 2.732412 ATGCGATGGGAGAGTAATCG 57.268 50.000 0.00 0.00 44.59 3.34
3064 3630 1.687563 TGCGATGGGAGAGTAATCGA 58.312 50.000 8.35 0.00 44.57 3.59
3065 3631 2.028876 TGCGATGGGAGAGTAATCGAA 58.971 47.619 8.35 0.00 44.57 3.71
3066 3632 2.223735 TGCGATGGGAGAGTAATCGAAC 60.224 50.000 8.35 0.00 44.57 3.95
3067 3633 2.862921 GCGATGGGAGAGTAATCGAACC 60.863 54.545 8.35 0.00 44.57 3.62
3068 3634 2.604855 CGATGGGAGAGTAATCGAACCG 60.605 54.545 0.00 0.00 44.57 4.44
3069 3635 2.133281 TGGGAGAGTAATCGAACCGA 57.867 50.000 0.00 0.00 41.13 4.69
3070 3636 1.747355 TGGGAGAGTAATCGAACCGAC 59.253 52.381 0.00 0.00 39.18 4.79
3071 3637 1.747355 GGGAGAGTAATCGAACCGACA 59.253 52.381 0.00 0.00 39.18 4.35
3072 3638 2.165030 GGGAGAGTAATCGAACCGACAA 59.835 50.000 0.00 0.00 39.18 3.18
3073 3639 3.177487 GGAGAGTAATCGAACCGACAAC 58.823 50.000 0.00 0.00 39.18 3.32
3074 3640 3.177487 GAGAGTAATCGAACCGACAACC 58.823 50.000 0.00 0.00 39.18 3.77
3075 3641 2.824341 AGAGTAATCGAACCGACAACCT 59.176 45.455 0.00 0.00 39.18 3.50
3076 3642 4.012374 AGAGTAATCGAACCGACAACCTA 58.988 43.478 0.00 0.00 39.18 3.08
3077 3643 4.101235 GAGTAATCGAACCGACAACCTAC 58.899 47.826 0.00 0.00 39.18 3.18
3078 3644 2.375173 AATCGAACCGACAACCTACC 57.625 50.000 0.00 0.00 39.18 3.18
3079 3645 1.259609 ATCGAACCGACAACCTACCA 58.740 50.000 0.00 0.00 39.18 3.25
3080 3646 0.314935 TCGAACCGACAACCTACCAC 59.685 55.000 0.00 0.00 0.00 4.16
3081 3647 0.032403 CGAACCGACAACCTACCACA 59.968 55.000 0.00 0.00 0.00 4.17
3082 3648 1.538634 CGAACCGACAACCTACCACAA 60.539 52.381 0.00 0.00 0.00 3.33
3083 3649 1.869132 GAACCGACAACCTACCACAAC 59.131 52.381 0.00 0.00 0.00 3.32
3084 3650 1.125633 ACCGACAACCTACCACAACT 58.874 50.000 0.00 0.00 0.00 3.16
3085 3651 2.318908 ACCGACAACCTACCACAACTA 58.681 47.619 0.00 0.00 0.00 2.24
3086 3652 2.699846 ACCGACAACCTACCACAACTAA 59.300 45.455 0.00 0.00 0.00 2.24
3087 3653 3.325716 ACCGACAACCTACCACAACTAAT 59.674 43.478 0.00 0.00 0.00 1.73
3088 3654 4.202388 ACCGACAACCTACCACAACTAATT 60.202 41.667 0.00 0.00 0.00 1.40
3089 3655 4.758165 CCGACAACCTACCACAACTAATTT 59.242 41.667 0.00 0.00 0.00 1.82
3090 3656 5.933463 CCGACAACCTACCACAACTAATTTA 59.067 40.000 0.00 0.00 0.00 1.40
3091 3657 6.091713 CCGACAACCTACCACAACTAATTTAG 59.908 42.308 1.79 1.79 0.00 1.85
3092 3658 6.401796 CGACAACCTACCACAACTAATTTAGC 60.402 42.308 3.28 0.00 0.00 3.09
3093 3659 6.300703 ACAACCTACCACAACTAATTTAGCA 58.699 36.000 3.28 0.00 0.00 3.49
3094 3660 6.773685 ACAACCTACCACAACTAATTTAGCAA 59.226 34.615 3.28 0.00 0.00 3.91
3095 3661 6.812879 ACCTACCACAACTAATTTAGCAAC 57.187 37.500 3.28 0.00 0.00 4.17
3096 3662 6.300703 ACCTACCACAACTAATTTAGCAACA 58.699 36.000 3.28 0.00 0.00 3.33
3097 3663 6.773685 ACCTACCACAACTAATTTAGCAACAA 59.226 34.615 3.28 0.00 0.00 2.83
3098 3664 7.081976 CCTACCACAACTAATTTAGCAACAAC 58.918 38.462 3.28 0.00 0.00 3.32
3099 3665 5.516090 ACCACAACTAATTTAGCAACAACG 58.484 37.500 3.28 0.00 0.00 4.10
3100 3666 5.297278 ACCACAACTAATTTAGCAACAACGA 59.703 36.000 3.28 0.00 0.00 3.85
3101 3667 6.183360 ACCACAACTAATTTAGCAACAACGAA 60.183 34.615 3.28 0.00 0.00 3.85
3102 3668 6.141685 CCACAACTAATTTAGCAACAACGAAC 59.858 38.462 3.28 0.00 0.00 3.95
3103 3669 6.689241 CACAACTAATTTAGCAACAACGAACA 59.311 34.615 3.28 0.00 0.00 3.18
3104 3670 7.219154 CACAACTAATTTAGCAACAACGAACAA 59.781 33.333 3.28 0.00 0.00 2.83
3105 3671 7.219344 ACAACTAATTTAGCAACAACGAACAAC 59.781 33.333 3.28 0.00 0.00 3.32
3106 3672 7.023197 ACTAATTTAGCAACAACGAACAACT 57.977 32.000 3.28 0.00 0.00 3.16
3107 3673 7.130269 ACTAATTTAGCAACAACGAACAACTC 58.870 34.615 3.28 0.00 0.00 3.01
3115 3681 3.782042 CGAACAACTCGGCTAGGC 58.218 61.111 6.15 6.15 44.20 3.93
3116 3682 1.810030 CGAACAACTCGGCTAGGCC 60.810 63.158 11.22 0.00 46.75 5.19
3130 3696 4.307443 GCTAGGCCATGTTATTGGTTTC 57.693 45.455 5.01 0.00 39.11 2.78
3131 3697 3.954258 GCTAGGCCATGTTATTGGTTTCT 59.046 43.478 5.01 0.00 39.11 2.52
3132 3698 4.402474 GCTAGGCCATGTTATTGGTTTCTT 59.598 41.667 5.01 0.00 39.11 2.52
3133 3699 5.105351 GCTAGGCCATGTTATTGGTTTCTTT 60.105 40.000 5.01 0.00 39.11 2.52
3134 3700 5.405935 AGGCCATGTTATTGGTTTCTTTC 57.594 39.130 5.01 0.00 39.11 2.62
3135 3701 4.837860 AGGCCATGTTATTGGTTTCTTTCA 59.162 37.500 5.01 0.00 39.11 2.69
3136 3702 5.306678 AGGCCATGTTATTGGTTTCTTTCAA 59.693 36.000 5.01 0.00 39.11 2.69
3137 3703 5.408299 GGCCATGTTATTGGTTTCTTTCAAC 59.592 40.000 0.00 0.00 39.11 3.18
3138 3704 6.223120 GCCATGTTATTGGTTTCTTTCAACT 58.777 36.000 0.00 0.00 39.11 3.16
3139 3705 6.705825 GCCATGTTATTGGTTTCTTTCAACTT 59.294 34.615 0.00 0.00 39.11 2.66
3140 3706 7.870445 GCCATGTTATTGGTTTCTTTCAACTTA 59.130 33.333 0.00 0.00 39.11 2.24
3141 3707 9.191995 CCATGTTATTGGTTTCTTTCAACTTAC 57.808 33.333 0.00 0.00 31.74 2.34
3142 3708 9.743057 CATGTTATTGGTTTCTTTCAACTTACA 57.257 29.630 0.00 0.00 0.00 2.41
3143 3709 9.744468 ATGTTATTGGTTTCTTTCAACTTACAC 57.256 29.630 0.00 0.00 0.00 2.90
3144 3710 8.740906 TGTTATTGGTTTCTTTCAACTTACACA 58.259 29.630 0.00 0.00 0.00 3.72
3145 3711 9.016623 GTTATTGGTTTCTTTCAACTTACACAC 57.983 33.333 0.00 0.00 0.00 3.82
3146 3712 6.827586 TTGGTTTCTTTCAACTTACACACT 57.172 33.333 0.00 0.00 0.00 3.55
3147 3713 7.925043 TTGGTTTCTTTCAACTTACACACTA 57.075 32.000 0.00 0.00 0.00 2.74
3148 3714 7.311364 TGGTTTCTTTCAACTTACACACTAC 57.689 36.000 0.00 0.00 0.00 2.73
3149 3715 7.107542 TGGTTTCTTTCAACTTACACACTACT 58.892 34.615 0.00 0.00 0.00 2.57
3150 3716 7.608761 TGGTTTCTTTCAACTTACACACTACTT 59.391 33.333 0.00 0.00 0.00 2.24
3151 3717 7.908601 GGTTTCTTTCAACTTACACACTACTTG 59.091 37.037 0.00 0.00 0.00 3.16
3152 3718 8.448615 GTTTCTTTCAACTTACACACTACTTGT 58.551 33.333 0.00 0.00 39.97 3.16
3153 3719 9.656040 TTTCTTTCAACTTACACACTACTTGTA 57.344 29.630 0.00 0.00 35.67 2.41
3154 3720 8.638685 TCTTTCAACTTACACACTACTTGTAC 57.361 34.615 0.00 0.00 35.67 2.90
3155 3721 7.707893 TCTTTCAACTTACACACTACTTGTACC 59.292 37.037 0.00 0.00 35.67 3.34
3156 3722 6.720112 TCAACTTACACACTACTTGTACCT 57.280 37.500 0.00 0.00 35.67 3.08
3157 3723 7.116075 TCAACTTACACACTACTTGTACCTT 57.884 36.000 0.00 0.00 35.67 3.50
3158 3724 7.205297 TCAACTTACACACTACTTGTACCTTC 58.795 38.462 0.00 0.00 35.67 3.46
3159 3725 6.094193 ACTTACACACTACTTGTACCTTCC 57.906 41.667 0.00 0.00 35.67 3.46
3160 3726 5.837438 ACTTACACACTACTTGTACCTTCCT 59.163 40.000 0.00 0.00 35.67 3.36
3161 3727 4.602340 ACACACTACTTGTACCTTCCTG 57.398 45.455 0.00 0.00 35.67 3.86
3162 3728 4.220724 ACACACTACTTGTACCTTCCTGA 58.779 43.478 0.00 0.00 35.67 3.86
3163 3729 4.652421 ACACACTACTTGTACCTTCCTGAA 59.348 41.667 0.00 0.00 35.67 3.02
3164 3730 4.989168 CACACTACTTGTACCTTCCTGAAC 59.011 45.833 0.00 0.00 35.67 3.18
3165 3731 4.900054 ACACTACTTGTACCTTCCTGAACT 59.100 41.667 0.00 0.00 36.32 3.01
3166 3732 5.010820 ACACTACTTGTACCTTCCTGAACTC 59.989 44.000 0.00 0.00 36.32 3.01
3167 3733 5.010719 CACTACTTGTACCTTCCTGAACTCA 59.989 44.000 0.00 0.00 0.00 3.41
3168 3734 4.338379 ACTTGTACCTTCCTGAACTCAC 57.662 45.455 0.00 0.00 0.00 3.51
3169 3735 3.967987 ACTTGTACCTTCCTGAACTCACT 59.032 43.478 0.00 0.00 0.00 3.41
3170 3736 4.409247 ACTTGTACCTTCCTGAACTCACTT 59.591 41.667 0.00 0.00 0.00 3.16
3171 3737 4.336889 TGTACCTTCCTGAACTCACTTG 57.663 45.455 0.00 0.00 0.00 3.16
3172 3738 3.709653 TGTACCTTCCTGAACTCACTTGT 59.290 43.478 0.00 0.00 0.00 3.16
3173 3739 3.477210 ACCTTCCTGAACTCACTTGTC 57.523 47.619 0.00 0.00 0.00 3.18
3174 3740 3.041946 ACCTTCCTGAACTCACTTGTCT 58.958 45.455 0.00 0.00 0.00 3.41
3175 3741 3.181461 ACCTTCCTGAACTCACTTGTCTG 60.181 47.826 0.00 0.00 0.00 3.51
3176 3742 3.397482 CTTCCTGAACTCACTTGTCTGG 58.603 50.000 0.00 0.00 0.00 3.86
3177 3743 1.694150 TCCTGAACTCACTTGTCTGGG 59.306 52.381 0.00 0.00 0.00 4.45
3178 3744 1.694150 CCTGAACTCACTTGTCTGGGA 59.306 52.381 0.00 0.00 0.00 4.37
3179 3745 2.304180 CCTGAACTCACTTGTCTGGGAT 59.696 50.000 0.00 0.00 0.00 3.85
3180 3746 3.244700 CCTGAACTCACTTGTCTGGGATT 60.245 47.826 0.00 0.00 0.00 3.01
3181 3747 4.392940 CTGAACTCACTTGTCTGGGATTT 58.607 43.478 0.00 0.00 0.00 2.17
3182 3748 4.136796 TGAACTCACTTGTCTGGGATTTG 58.863 43.478 0.00 0.00 0.00 2.32
3183 3749 3.146104 ACTCACTTGTCTGGGATTTGG 57.854 47.619 0.00 0.00 0.00 3.28
3184 3750 2.711009 ACTCACTTGTCTGGGATTTGGA 59.289 45.455 0.00 0.00 0.00 3.53
3185 3751 3.138283 ACTCACTTGTCTGGGATTTGGAA 59.862 43.478 0.00 0.00 0.00 3.53
3186 3752 3.486383 TCACTTGTCTGGGATTTGGAAC 58.514 45.455 0.00 0.00 0.00 3.62
3187 3753 2.558359 CACTTGTCTGGGATTTGGAACC 59.442 50.000 0.00 0.00 0.00 3.62
3188 3754 2.447047 ACTTGTCTGGGATTTGGAACCT 59.553 45.455 0.00 0.00 0.00 3.50
3189 3755 3.117131 ACTTGTCTGGGATTTGGAACCTT 60.117 43.478 0.00 0.00 0.00 3.50
3190 3756 3.611025 TGTCTGGGATTTGGAACCTTT 57.389 42.857 0.00 0.00 0.00 3.11
3191 3757 3.922375 TGTCTGGGATTTGGAACCTTTT 58.078 40.909 0.00 0.00 0.00 2.27
3192 3758 4.294347 TGTCTGGGATTTGGAACCTTTTT 58.706 39.130 0.00 0.00 0.00 1.94
3212 3778 3.547054 TTCTGGACGTTTTACACCAGT 57.453 42.857 15.89 0.00 46.68 4.00
3213 3779 3.547054 TCTGGACGTTTTACACCAGTT 57.453 42.857 15.89 0.00 46.68 3.16
3214 3780 3.460103 TCTGGACGTTTTACACCAGTTC 58.540 45.455 15.89 0.00 46.68 3.01
3215 3781 3.118702 TCTGGACGTTTTACACCAGTTCA 60.119 43.478 15.89 0.00 46.68 3.18
3216 3782 3.199677 TGGACGTTTTACACCAGTTCAG 58.800 45.455 0.00 0.00 0.00 3.02
3217 3783 3.118702 TGGACGTTTTACACCAGTTCAGA 60.119 43.478 0.00 0.00 0.00 3.27
3218 3784 4.062991 GGACGTTTTACACCAGTTCAGAT 58.937 43.478 0.00 0.00 0.00 2.90
3219 3785 4.084013 GGACGTTTTACACCAGTTCAGATG 60.084 45.833 0.00 0.00 0.00 2.90
3220 3786 3.813166 ACGTTTTACACCAGTTCAGATGG 59.187 43.478 0.00 0.00 43.87 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.461548 CTCCTACCGCTTCATCTGCA 59.538 55.000 0.00 0.00 0.00 4.41
14 15 0.739561 GTCGACTCCTACCGCTTCAT 59.260 55.000 8.70 0.00 0.00 2.57
15 16 1.310933 GGTCGACTCCTACCGCTTCA 61.311 60.000 16.46 0.00 0.00 3.02
17 18 0.896940 TTGGTCGACTCCTACCGCTT 60.897 55.000 16.46 0.00 38.70 4.68
43 44 2.046892 GTGGACGTGGCAGAGCAT 60.047 61.111 0.00 0.00 0.00 3.79
61 62 3.399181 ATGGCCATCGTGTCGGGT 61.399 61.111 14.09 0.00 0.00 5.28
62 63 2.896854 CATGGCCATCGTGTCGGG 60.897 66.667 17.61 0.00 0.00 5.14
117 118 0.684805 CTACAACCTCGGCCTCCTCT 60.685 60.000 0.00 0.00 0.00 3.69
154 155 1.338020 CAGGAGGCCAAGTTTCAACAC 59.662 52.381 5.01 0.00 0.00 3.32
216 217 1.524002 CATGTCGGCCTCACCATCT 59.476 57.895 0.00 0.00 39.03 2.90
259 275 1.522355 CGCTGCAATGGAGGACGAT 60.522 57.895 3.49 0.00 0.00 3.73
333 373 0.805614 CTCGTCGGAGCAGAAGAAGA 59.194 55.000 0.00 0.00 32.61 2.87
396 437 0.832135 TTTCTCCTCTCCGCACCAGT 60.832 55.000 0.00 0.00 0.00 4.00
428 470 0.104855 GACCATAGCCGCAGTCATCA 59.895 55.000 0.00 0.00 0.00 3.07
454 496 2.522185 TCCGCCCGCTATATAAACTCT 58.478 47.619 0.00 0.00 0.00 3.24
486 550 0.388520 TCGTTCGTCTGTCTGCCATG 60.389 55.000 0.00 0.00 0.00 3.66
748 829 3.914713 CCCTGGCCCACCCAAACT 61.915 66.667 0.00 0.00 44.81 2.66
791 873 2.580601 GGGCTATACGGGCGTCCAT 61.581 63.158 6.96 0.00 0.00 3.41
792 875 3.228759 GGGCTATACGGGCGTCCA 61.229 66.667 6.96 0.00 0.00 4.02
802 885 5.670361 ACCAAAGATAAAGTGGAGGGCTATA 59.330 40.000 0.00 0.00 36.23 1.31
810 893 5.136828 TCTGCAAACCAAAGATAAAGTGGA 58.863 37.500 0.00 0.00 36.23 4.02
846 930 8.642935 TTTGTATTGATTCATTTGGTGGTCTA 57.357 30.769 0.00 0.00 0.00 2.59
870 954 5.277490 CGTGTTCTGTCATTCAACACAGATT 60.277 40.000 16.74 0.00 46.55 2.40
875 959 2.602217 GGCGTGTTCTGTCATTCAACAC 60.602 50.000 10.50 10.50 40.03 3.32
877 961 1.069227 GGGCGTGTTCTGTCATTCAAC 60.069 52.381 0.00 0.00 0.00 3.18
895 979 0.179020 TCTGAACCACACTGCTTGGG 60.179 55.000 0.71 0.00 38.59 4.12
898 982 0.178068 ACGTCTGAACCACACTGCTT 59.822 50.000 0.00 0.00 0.00 3.91
904 988 1.069358 TGCACATACGTCTGAACCACA 59.931 47.619 8.06 0.00 0.00 4.17
909 993 3.056179 TCTTCCATGCACATACGTCTGAA 60.056 43.478 8.06 0.00 0.00 3.02
921 1005 2.378038 GTTAAGGGCATCTTCCATGCA 58.622 47.619 8.74 0.00 46.21 3.96
923 1007 2.310538 GGGTTAAGGGCATCTTCCATG 58.689 52.381 0.00 0.00 36.93 3.66
1008 1117 3.119919 AGACTAGACGTTTCGCTACCAAG 60.120 47.826 0.00 0.00 0.00 3.61
1131 1257 0.877071 GCTTCAGCTTGCTGTTGCTA 59.123 50.000 20.20 0.06 37.81 3.49
1498 1624 5.980324 CAAATGTAGACGATTTTGCAGTG 57.020 39.130 0.00 0.00 0.00 3.66
1605 2013 9.638176 AGAGCTGGAATAAAATCTGTTATGATT 57.362 29.630 0.00 0.00 38.19 2.57
1606 2014 9.282569 GAGAGCTGGAATAAAATCTGTTATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1607 2015 7.716998 GGAGAGCTGGAATAAAATCTGTTATGA 59.283 37.037 0.00 0.00 0.00 2.15
1608 2016 7.718753 AGGAGAGCTGGAATAAAATCTGTTATG 59.281 37.037 0.00 0.00 0.00 1.90
1609 2017 7.810260 AGGAGAGCTGGAATAAAATCTGTTAT 58.190 34.615 0.00 0.00 0.00 1.89
1610 2018 7.200434 AGGAGAGCTGGAATAAAATCTGTTA 57.800 36.000 0.00 0.00 0.00 2.41
1611 2019 6.072199 AGGAGAGCTGGAATAAAATCTGTT 57.928 37.500 0.00 0.00 0.00 3.16
1612 2020 5.707066 AGGAGAGCTGGAATAAAATCTGT 57.293 39.130 0.00 0.00 0.00 3.41
1613 2021 5.884792 ACAAGGAGAGCTGGAATAAAATCTG 59.115 40.000 0.00 0.00 0.00 2.90
1614 2022 5.884792 CACAAGGAGAGCTGGAATAAAATCT 59.115 40.000 0.00 0.00 0.00 2.40
1795 2361 2.165437 AGTCTCGAACATCTCTTGGAGC 59.835 50.000 0.00 0.00 0.00 4.70
1942 2508 1.996191 GCTAGCTTCCTGACTTTGTCG 59.004 52.381 7.70 0.00 34.95 4.35
2203 2769 1.407656 AAGTGAAGCCTGACCCACGA 61.408 55.000 0.00 0.00 34.93 4.35
2239 2805 2.031163 GTCAAGCTCCGCCAGTGT 59.969 61.111 0.00 0.00 0.00 3.55
2240 2806 2.031516 CAGTCAAGCTCCGCCAGTG 61.032 63.158 0.00 0.00 0.00 3.66
2241 2807 2.345244 CAGTCAAGCTCCGCCAGT 59.655 61.111 0.00 0.00 0.00 4.00
2242 2808 3.123620 GCAGTCAAGCTCCGCCAG 61.124 66.667 0.00 0.00 0.00 4.85
2243 2809 2.753009 ATTGCAGTCAAGCTCCGCCA 62.753 55.000 0.00 0.00 35.37 5.69
2244 2810 2.042831 ATTGCAGTCAAGCTCCGCC 61.043 57.895 0.00 0.00 35.37 6.13
2245 2811 1.136147 CATTGCAGTCAAGCTCCGC 59.864 57.895 0.00 0.00 35.37 5.54
2246 2812 0.445436 GACATTGCAGTCAAGCTCCG 59.555 55.000 1.41 0.00 38.40 4.63
2247 2813 1.467734 CTGACATTGCAGTCAAGCTCC 59.532 52.381 9.75 0.00 46.90 4.70
2248 2814 1.467734 CCTGACATTGCAGTCAAGCTC 59.532 52.381 9.75 0.00 46.90 4.09
2249 2815 1.531423 CCTGACATTGCAGTCAAGCT 58.469 50.000 9.75 0.00 46.90 3.74
2250 2816 0.524862 CCCTGACATTGCAGTCAAGC 59.475 55.000 9.75 0.00 46.90 4.01
2251 2817 1.171308 CCCCTGACATTGCAGTCAAG 58.829 55.000 9.75 4.35 46.90 3.02
2252 2818 0.251297 CCCCCTGACATTGCAGTCAA 60.251 55.000 9.75 0.00 46.90 3.18
2253 2819 1.379916 CCCCCTGACATTGCAGTCA 59.620 57.895 8.36 8.36 45.64 3.41
2254 2820 4.326255 CCCCCTGACATTGCAGTC 57.674 61.111 0.00 0.00 38.99 3.51
2268 2834 0.033109 ATACTTTGCTTCTGGCCCCC 60.033 55.000 0.00 0.00 40.92 5.40
2269 2835 2.298610 GTATACTTTGCTTCTGGCCCC 58.701 52.381 0.00 0.00 40.92 5.80
2270 2836 2.999331 TGTATACTTTGCTTCTGGCCC 58.001 47.619 0.00 0.00 40.92 5.80
2271 2837 3.947834 ACATGTATACTTTGCTTCTGGCC 59.052 43.478 0.00 0.00 40.92 5.36
2272 2838 5.567138 AACATGTATACTTTGCTTCTGGC 57.433 39.130 0.00 0.00 42.22 4.85
2275 2841 9.561069 CCCTATAAACATGTATACTTTGCTTCT 57.439 33.333 0.00 0.00 0.00 2.85
2276 2842 8.784043 CCCCTATAAACATGTATACTTTGCTTC 58.216 37.037 0.00 0.00 0.00 3.86
2277 2843 7.230712 GCCCCTATAAACATGTATACTTTGCTT 59.769 37.037 0.00 2.97 0.00 3.91
2278 2844 6.715264 GCCCCTATAAACATGTATACTTTGCT 59.285 38.462 0.00 0.00 0.00 3.91
2279 2845 6.715264 AGCCCCTATAAACATGTATACTTTGC 59.285 38.462 0.00 0.00 0.00 3.68
2280 2846 9.787435 TTAGCCCCTATAAACATGTATACTTTG 57.213 33.333 0.00 4.80 0.00 2.77
2282 2848 9.959721 CATTAGCCCCTATAAACATGTATACTT 57.040 33.333 0.00 0.00 0.00 2.24
2283 2849 9.333961 TCATTAGCCCCTATAAACATGTATACT 57.666 33.333 0.00 0.00 0.00 2.12
2284 2850 9.601217 CTCATTAGCCCCTATAAACATGTATAC 57.399 37.037 0.00 0.00 0.00 1.47
2285 2851 9.555411 TCTCATTAGCCCCTATAAACATGTATA 57.445 33.333 0.00 0.00 0.00 1.47
2286 2852 8.449423 TCTCATTAGCCCCTATAAACATGTAT 57.551 34.615 0.00 0.00 0.00 2.29
2287 2853 7.865530 TCTCATTAGCCCCTATAAACATGTA 57.134 36.000 0.00 0.00 0.00 2.29
2288 2854 6.763715 TCTCATTAGCCCCTATAAACATGT 57.236 37.500 0.00 0.00 0.00 3.21
2289 2855 9.167311 GTATTCTCATTAGCCCCTATAAACATG 57.833 37.037 0.00 0.00 0.00 3.21
2290 2856 9.117223 AGTATTCTCATTAGCCCCTATAAACAT 57.883 33.333 0.00 0.00 0.00 2.71
2291 2857 8.506196 AGTATTCTCATTAGCCCCTATAAACA 57.494 34.615 0.00 0.00 0.00 2.83
2292 2858 9.794719 AAAGTATTCTCATTAGCCCCTATAAAC 57.205 33.333 0.00 0.00 0.00 2.01
2293 2859 9.793259 CAAAGTATTCTCATTAGCCCCTATAAA 57.207 33.333 0.00 0.00 0.00 1.40
2294 2860 8.945193 ACAAAGTATTCTCATTAGCCCCTATAA 58.055 33.333 0.00 0.00 0.00 0.98
2295 2861 8.506196 ACAAAGTATTCTCATTAGCCCCTATA 57.494 34.615 0.00 0.00 0.00 1.31
2296 2862 7.394144 ACAAAGTATTCTCATTAGCCCCTAT 57.606 36.000 0.00 0.00 0.00 2.57
2297 2863 6.824958 ACAAAGTATTCTCATTAGCCCCTA 57.175 37.500 0.00 0.00 0.00 3.53
2298 2864 5.717119 ACAAAGTATTCTCATTAGCCCCT 57.283 39.130 0.00 0.00 0.00 4.79
2299 2865 6.122964 AGAACAAAGTATTCTCATTAGCCCC 58.877 40.000 0.00 0.00 30.33 5.80
2300 2866 8.732746 TTAGAACAAAGTATTCTCATTAGCCC 57.267 34.615 0.00 0.00 37.57 5.19
2307 2873 9.679661 TGGCATAATTAGAACAAAGTATTCTCA 57.320 29.630 0.00 0.00 37.57 3.27
2308 2874 9.937175 GTGGCATAATTAGAACAAAGTATTCTC 57.063 33.333 0.00 0.00 37.57 2.87
2309 2875 8.903820 GGTGGCATAATTAGAACAAAGTATTCT 58.096 33.333 0.00 0.00 39.70 2.40
2310 2876 8.135529 GGGTGGCATAATTAGAACAAAGTATTC 58.864 37.037 0.00 0.00 0.00 1.75
2311 2877 7.839200 AGGGTGGCATAATTAGAACAAAGTATT 59.161 33.333 0.00 0.00 0.00 1.89
2312 2878 7.354312 AGGGTGGCATAATTAGAACAAAGTAT 58.646 34.615 0.00 0.00 0.00 2.12
2313 2879 6.727394 AGGGTGGCATAATTAGAACAAAGTA 58.273 36.000 0.00 0.00 0.00 2.24
2314 2880 5.580022 AGGGTGGCATAATTAGAACAAAGT 58.420 37.500 0.00 0.00 0.00 2.66
2315 2881 7.639113 TTAGGGTGGCATAATTAGAACAAAG 57.361 36.000 0.00 0.00 0.00 2.77
2316 2882 8.423906 TTTTAGGGTGGCATAATTAGAACAAA 57.576 30.769 0.00 0.00 0.00 2.83
2317 2883 7.891183 TCTTTTAGGGTGGCATAATTAGAACAA 59.109 33.333 0.00 0.00 0.00 2.83
2318 2884 7.406916 TCTTTTAGGGTGGCATAATTAGAACA 58.593 34.615 0.00 0.00 0.00 3.18
2319 2885 7.875327 TCTTTTAGGGTGGCATAATTAGAAC 57.125 36.000 0.00 0.00 0.00 3.01
2723 3289 9.634163 CACAACTGCAATGCATATATTATGATT 57.366 29.630 8.91 0.00 38.13 2.57
2724 3290 9.016438 TCACAACTGCAATGCATATATTATGAT 57.984 29.630 8.91 0.00 38.13 2.45
2725 3291 8.393671 TCACAACTGCAATGCATATATTATGA 57.606 30.769 8.91 3.62 38.13 2.15
2726 3292 9.634163 AATCACAACTGCAATGCATATATTATG 57.366 29.630 8.91 1.17 38.13 1.90
2729 3295 9.467258 GTAAATCACAACTGCAATGCATATATT 57.533 29.630 8.91 0.00 38.13 1.28
2730 3296 8.084073 GGTAAATCACAACTGCAATGCATATAT 58.916 33.333 8.91 0.00 38.13 0.86
2731 3297 7.285172 AGGTAAATCACAACTGCAATGCATATA 59.715 33.333 8.91 0.00 38.13 0.86
2732 3298 6.097270 AGGTAAATCACAACTGCAATGCATAT 59.903 34.615 8.91 0.00 38.13 1.78
2733 3299 5.418524 AGGTAAATCACAACTGCAATGCATA 59.581 36.000 8.91 0.00 38.13 3.14
2734 3300 4.221262 AGGTAAATCACAACTGCAATGCAT 59.779 37.500 8.91 0.00 38.13 3.96
2735 3301 3.573538 AGGTAAATCACAACTGCAATGCA 59.426 39.130 7.99 7.99 36.92 3.96
2736 3302 4.178545 AGGTAAATCACAACTGCAATGC 57.821 40.909 0.00 0.00 0.00 3.56
2737 3303 9.853555 TTTAATAGGTAAATCACAACTGCAATG 57.146 29.630 0.00 0.00 0.00 2.82
2758 3324 8.850156 GCCAGTTATCACAGTCCATAATTTAAT 58.150 33.333 0.00 0.00 0.00 1.40
2759 3325 7.831690 TGCCAGTTATCACAGTCCATAATTTAA 59.168 33.333 0.00 0.00 0.00 1.52
2760 3326 7.342581 TGCCAGTTATCACAGTCCATAATTTA 58.657 34.615 0.00 0.00 0.00 1.40
2761 3327 6.186957 TGCCAGTTATCACAGTCCATAATTT 58.813 36.000 0.00 0.00 0.00 1.82
2762 3328 5.754782 TGCCAGTTATCACAGTCCATAATT 58.245 37.500 0.00 0.00 0.00 1.40
2763 3329 5.372343 TGCCAGTTATCACAGTCCATAAT 57.628 39.130 0.00 0.00 0.00 1.28
2764 3330 4.835284 TGCCAGTTATCACAGTCCATAA 57.165 40.909 0.00 0.00 0.00 1.90
2765 3331 4.225042 AGTTGCCAGTTATCACAGTCCATA 59.775 41.667 0.00 0.00 0.00 2.74
2766 3332 3.009473 AGTTGCCAGTTATCACAGTCCAT 59.991 43.478 0.00 0.00 0.00 3.41
2767 3333 2.371841 AGTTGCCAGTTATCACAGTCCA 59.628 45.455 0.00 0.00 0.00 4.02
2768 3334 2.744202 CAGTTGCCAGTTATCACAGTCC 59.256 50.000 0.00 0.00 0.00 3.85
2769 3335 3.187227 CACAGTTGCCAGTTATCACAGTC 59.813 47.826 0.00 0.00 0.00 3.51
2770 3336 3.141398 CACAGTTGCCAGTTATCACAGT 58.859 45.455 0.00 0.00 0.00 3.55
2771 3337 3.058708 CACACAGTTGCCAGTTATCACAG 60.059 47.826 0.00 0.00 0.00 3.66
2772 3338 2.877786 CACACAGTTGCCAGTTATCACA 59.122 45.455 0.00 0.00 0.00 3.58
2773 3339 2.350772 GCACACAGTTGCCAGTTATCAC 60.351 50.000 0.00 0.00 36.42 3.06
2774 3340 1.879380 GCACACAGTTGCCAGTTATCA 59.121 47.619 0.00 0.00 36.42 2.15
2775 3341 2.619013 GCACACAGTTGCCAGTTATC 57.381 50.000 0.00 0.00 36.42 1.75
2783 3349 0.665369 GCAATCTGGCACACAGTTGC 60.665 55.000 14.13 14.13 46.44 4.17
2788 3354 1.273048 GGATTTGCAATCTGGCACACA 59.727 47.619 0.00 0.00 44.86 3.72
2789 3355 1.273048 TGGATTTGCAATCTGGCACAC 59.727 47.619 0.00 0.00 44.86 3.82
2790 3356 1.273048 GTGGATTTGCAATCTGGCACA 59.727 47.619 0.00 0.00 44.86 4.57
2791 3357 1.404583 GGTGGATTTGCAATCTGGCAC 60.405 52.381 0.00 4.51 44.86 5.01
2792 3358 0.896923 GGTGGATTTGCAATCTGGCA 59.103 50.000 0.00 0.00 43.19 4.92
2793 3359 0.896923 TGGTGGATTTGCAATCTGGC 59.103 50.000 0.00 0.00 0.00 4.85
2794 3360 1.894466 TGTGGTGGATTTGCAATCTGG 59.106 47.619 0.00 0.00 0.00 3.86
2795 3361 2.353011 GGTGTGGTGGATTTGCAATCTG 60.353 50.000 0.00 0.00 0.00 2.90
2796 3362 1.895131 GGTGTGGTGGATTTGCAATCT 59.105 47.619 0.00 0.00 0.00 2.40
2797 3363 1.066929 GGGTGTGGTGGATTTGCAATC 60.067 52.381 0.00 0.00 0.00 2.67
2798 3364 0.975887 GGGTGTGGTGGATTTGCAAT 59.024 50.000 0.00 0.00 0.00 3.56
2799 3365 1.118356 GGGGTGTGGTGGATTTGCAA 61.118 55.000 0.00 0.00 0.00 4.08
2800 3366 1.532794 GGGGTGTGGTGGATTTGCA 60.533 57.895 0.00 0.00 0.00 4.08
2801 3367 2.282783 GGGGGTGTGGTGGATTTGC 61.283 63.158 0.00 0.00 0.00 3.68
2802 3368 0.611896 GAGGGGGTGTGGTGGATTTG 60.612 60.000 0.00 0.00 0.00 2.32
2803 3369 1.774300 GAGGGGGTGTGGTGGATTT 59.226 57.895 0.00 0.00 0.00 2.17
2804 3370 2.602676 CGAGGGGGTGTGGTGGATT 61.603 63.158 0.00 0.00 0.00 3.01
2805 3371 3.009115 CGAGGGGGTGTGGTGGAT 61.009 66.667 0.00 0.00 0.00 3.41
2806 3372 4.567597 ACGAGGGGGTGTGGTGGA 62.568 66.667 0.00 0.00 0.00 4.02
2807 3373 4.329545 CACGAGGGGGTGTGGTGG 62.330 72.222 0.00 0.00 33.24 4.61
2822 3388 3.322706 GATGGGTTTCGTGCGGCAC 62.323 63.158 22.78 22.78 0.00 5.01
2823 3389 3.053291 GATGGGTTTCGTGCGGCA 61.053 61.111 0.00 0.00 0.00 5.69
2824 3390 3.810896 GGATGGGTTTCGTGCGGC 61.811 66.667 0.00 0.00 0.00 6.53
2825 3391 3.131478 GGGATGGGTTTCGTGCGG 61.131 66.667 0.00 0.00 0.00 5.69
2826 3392 1.644786 GAAGGGATGGGTTTCGTGCG 61.645 60.000 0.00 0.00 0.00 5.34
2827 3393 0.322546 AGAAGGGATGGGTTTCGTGC 60.323 55.000 0.00 0.00 0.00 5.34
2828 3394 2.084546 GAAGAAGGGATGGGTTTCGTG 58.915 52.381 0.00 0.00 0.00 4.35
2829 3395 1.985895 AGAAGAAGGGATGGGTTTCGT 59.014 47.619 0.00 0.00 0.00 3.85
2830 3396 2.633488 GAGAAGAAGGGATGGGTTTCG 58.367 52.381 0.00 0.00 0.00 3.46
2831 3397 2.578480 AGGAGAAGAAGGGATGGGTTTC 59.422 50.000 0.00 0.00 0.00 2.78
2832 3398 2.310052 CAGGAGAAGAAGGGATGGGTTT 59.690 50.000 0.00 0.00 0.00 3.27
2833 3399 1.918957 CAGGAGAAGAAGGGATGGGTT 59.081 52.381 0.00 0.00 0.00 4.11
2834 3400 1.081174 TCAGGAGAAGAAGGGATGGGT 59.919 52.381 0.00 0.00 0.00 4.51
2835 3401 1.885049 TCAGGAGAAGAAGGGATGGG 58.115 55.000 0.00 0.00 0.00 4.00
2836 3402 4.516652 AAATCAGGAGAAGAAGGGATGG 57.483 45.455 0.00 0.00 0.00 3.51
2837 3403 5.589452 CAGAAAATCAGGAGAAGAAGGGATG 59.411 44.000 0.00 0.00 0.00 3.51
2838 3404 5.339861 CCAGAAAATCAGGAGAAGAAGGGAT 60.340 44.000 0.00 0.00 0.00 3.85
2839 3405 4.018960 CCAGAAAATCAGGAGAAGAAGGGA 60.019 45.833 0.00 0.00 0.00 4.20
2840 3406 4.268359 CCAGAAAATCAGGAGAAGAAGGG 58.732 47.826 0.00 0.00 0.00 3.95
2841 3407 4.268359 CCCAGAAAATCAGGAGAAGAAGG 58.732 47.826 0.00 0.00 0.00 3.46
2842 3408 3.693578 GCCCAGAAAATCAGGAGAAGAAG 59.306 47.826 0.00 0.00 0.00 2.85
2843 3409 3.562176 GGCCCAGAAAATCAGGAGAAGAA 60.562 47.826 0.00 0.00 0.00 2.52
2844 3410 2.025887 GGCCCAGAAAATCAGGAGAAGA 60.026 50.000 0.00 0.00 0.00 2.87
2845 3411 2.291153 TGGCCCAGAAAATCAGGAGAAG 60.291 50.000 0.00 0.00 0.00 2.85
2846 3412 1.710244 TGGCCCAGAAAATCAGGAGAA 59.290 47.619 0.00 0.00 0.00 2.87
2847 3413 1.371467 TGGCCCAGAAAATCAGGAGA 58.629 50.000 0.00 0.00 0.00 3.71
2848 3414 2.305009 GATGGCCCAGAAAATCAGGAG 58.695 52.381 0.00 0.00 0.00 3.69
2849 3415 1.063717 GGATGGCCCAGAAAATCAGGA 60.064 52.381 0.00 0.00 34.14 3.86
2850 3416 1.406903 GGATGGCCCAGAAAATCAGG 58.593 55.000 0.00 0.00 34.14 3.86
2878 3444 3.622060 AAGGGATGGGTTCGTGCGG 62.622 63.158 0.00 0.00 0.00 5.69
2879 3445 1.241315 AAAAGGGATGGGTTCGTGCG 61.241 55.000 0.00 0.00 0.00 5.34
2880 3446 0.966179 AAAAAGGGATGGGTTCGTGC 59.034 50.000 0.00 0.00 0.00 5.34
2881 3447 2.488153 GAGAAAAAGGGATGGGTTCGTG 59.512 50.000 0.00 0.00 0.00 4.35
2882 3448 2.554564 GGAGAAAAAGGGATGGGTTCGT 60.555 50.000 0.00 0.00 0.00 3.85
2883 3449 2.092323 GGAGAAAAAGGGATGGGTTCG 58.908 52.381 0.00 0.00 0.00 3.95
2884 3450 3.092301 CAGGAGAAAAAGGGATGGGTTC 58.908 50.000 0.00 0.00 0.00 3.62
2885 3451 2.721906 TCAGGAGAAAAAGGGATGGGTT 59.278 45.455 0.00 0.00 0.00 4.11
2886 3452 2.358258 TCAGGAGAAAAAGGGATGGGT 58.642 47.619 0.00 0.00 0.00 4.51
2887 3453 3.677156 ATCAGGAGAAAAAGGGATGGG 57.323 47.619 0.00 0.00 0.00 4.00
2888 3454 5.718607 AGAAAATCAGGAGAAAAAGGGATGG 59.281 40.000 0.00 0.00 0.00 3.51
2889 3455 6.350780 CCAGAAAATCAGGAGAAAAAGGGATG 60.351 42.308 0.00 0.00 0.00 3.51
2890 3456 5.718607 CCAGAAAATCAGGAGAAAAAGGGAT 59.281 40.000 0.00 0.00 0.00 3.85
2891 3457 5.079643 CCAGAAAATCAGGAGAAAAAGGGA 58.920 41.667 0.00 0.00 0.00 4.20
2892 3458 4.221482 CCCAGAAAATCAGGAGAAAAAGGG 59.779 45.833 0.00 0.00 0.00 3.95
2893 3459 4.322273 GCCCAGAAAATCAGGAGAAAAAGG 60.322 45.833 0.00 0.00 0.00 3.11
2894 3460 4.322273 GGCCCAGAAAATCAGGAGAAAAAG 60.322 45.833 0.00 0.00 0.00 2.27
2895 3461 3.578282 GGCCCAGAAAATCAGGAGAAAAA 59.422 43.478 0.00 0.00 0.00 1.94
2896 3462 3.165071 GGCCCAGAAAATCAGGAGAAAA 58.835 45.455 0.00 0.00 0.00 2.29
2897 3463 2.109834 TGGCCCAGAAAATCAGGAGAAA 59.890 45.455 0.00 0.00 0.00 2.52
2898 3464 1.710244 TGGCCCAGAAAATCAGGAGAA 59.290 47.619 0.00 0.00 0.00 2.87
2899 3465 1.371467 TGGCCCAGAAAATCAGGAGA 58.629 50.000 0.00 0.00 0.00 3.71
2900 3466 2.305009 GATGGCCCAGAAAATCAGGAG 58.695 52.381 0.00 0.00 0.00 3.69
2901 3467 1.063717 GGATGGCCCAGAAAATCAGGA 60.064 52.381 0.00 0.00 34.14 3.86
2902 3468 1.406903 GGATGGCCCAGAAAATCAGG 58.593 55.000 0.00 0.00 34.14 3.86
2929 3495 4.452733 GAGAGGGGTTCGTGCGGG 62.453 72.222 0.00 0.00 0.00 6.13
2930 3496 2.837371 GAAGAGAGGGGTTCGTGCGG 62.837 65.000 0.00 0.00 0.00 5.69
2931 3497 1.446272 GAAGAGAGGGGTTCGTGCG 60.446 63.158 0.00 0.00 0.00 5.34
2932 3498 0.108567 GAGAAGAGAGGGGTTCGTGC 60.109 60.000 0.00 0.00 0.00 5.34
2933 3499 0.533032 GGAGAAGAGAGGGGTTCGTG 59.467 60.000 0.00 0.00 0.00 4.35
2934 3500 0.410270 AGGAGAAGAGAGGGGTTCGT 59.590 55.000 0.00 0.00 0.00 3.85
2935 3501 0.820871 CAGGAGAAGAGAGGGGTTCG 59.179 60.000 0.00 0.00 0.00 3.95
2936 3502 2.239681 TCAGGAGAAGAGAGGGGTTC 57.760 55.000 0.00 0.00 0.00 3.62
2937 3503 2.959421 ATCAGGAGAAGAGAGGGGTT 57.041 50.000 0.00 0.00 0.00 4.11
2938 3504 2.959421 AATCAGGAGAAGAGAGGGGT 57.041 50.000 0.00 0.00 0.00 4.95
2939 3505 5.455899 CCATAAAATCAGGAGAAGAGAGGGG 60.456 48.000 0.00 0.00 0.00 4.79
2940 3506 5.455899 CCCATAAAATCAGGAGAAGAGAGGG 60.456 48.000 0.00 0.00 0.00 4.30
2941 3507 5.619220 CCCATAAAATCAGGAGAAGAGAGG 58.381 45.833 0.00 0.00 0.00 3.69
2942 3508 5.062528 GCCCATAAAATCAGGAGAAGAGAG 58.937 45.833 0.00 0.00 0.00 3.20
2943 3509 4.141390 GGCCCATAAAATCAGGAGAAGAGA 60.141 45.833 0.00 0.00 0.00 3.10
2944 3510 4.140536 GGCCCATAAAATCAGGAGAAGAG 58.859 47.826 0.00 0.00 0.00 2.85
2945 3511 3.527253 TGGCCCATAAAATCAGGAGAAGA 59.473 43.478 0.00 0.00 0.00 2.87
2946 3512 3.633986 GTGGCCCATAAAATCAGGAGAAG 59.366 47.826 0.00 0.00 0.00 2.85
2947 3513 3.627237 GGTGGCCCATAAAATCAGGAGAA 60.627 47.826 0.00 0.00 0.00 2.87
2948 3514 2.091885 GGTGGCCCATAAAATCAGGAGA 60.092 50.000 0.00 0.00 0.00 3.71
2949 3515 2.310538 GGTGGCCCATAAAATCAGGAG 58.689 52.381 0.00 0.00 0.00 3.69
2950 3516 1.063266 GGGTGGCCCATAAAATCAGGA 60.063 52.381 0.00 0.00 44.65 3.86
2951 3517 1.413118 GGGTGGCCCATAAAATCAGG 58.587 55.000 0.00 0.00 44.65 3.86
2952 3518 1.032014 CGGGTGGCCCATAAAATCAG 58.968 55.000 0.00 0.00 45.83 2.90
2953 3519 0.396417 CCGGGTGGCCCATAAAATCA 60.396 55.000 0.00 0.00 45.83 2.57
2954 3520 0.106419 TCCGGGTGGCCCATAAAATC 60.106 55.000 0.00 0.00 45.83 2.17
2955 3521 0.560688 ATCCGGGTGGCCCATAAAAT 59.439 50.000 0.00 0.00 45.83 1.82
2956 3522 0.336737 AATCCGGGTGGCCCATAAAA 59.663 50.000 0.00 0.00 45.83 1.52
2957 3523 0.106419 GAATCCGGGTGGCCCATAAA 60.106 55.000 0.00 0.00 45.83 1.40
2958 3524 1.534697 GAATCCGGGTGGCCCATAA 59.465 57.895 0.00 0.00 45.83 1.90
2959 3525 2.457323 GGAATCCGGGTGGCCCATA 61.457 63.158 0.00 0.00 45.83 2.74
2960 3526 3.820843 GGAATCCGGGTGGCCCAT 61.821 66.667 0.00 0.00 45.83 4.00
2991 3557 2.514824 GCAGAATCGGGACAGGCC 60.515 66.667 0.00 0.00 0.00 5.19
2992 3558 2.892425 CGCAGAATCGGGACAGGC 60.892 66.667 0.00 0.00 0.00 4.85
2993 3559 2.892425 GCGCAGAATCGGGACAGG 60.892 66.667 0.30 0.00 0.00 4.00
2994 3560 2.125552 TGCGCAGAATCGGGACAG 60.126 61.111 5.66 0.00 0.00 3.51
2995 3561 2.434185 GTGCGCAGAATCGGGACA 60.434 61.111 12.22 0.00 0.00 4.02
2996 3562 2.434185 TGTGCGCAGAATCGGGAC 60.434 61.111 12.22 0.00 0.00 4.46
2997 3563 2.434185 GTGTGCGCAGAATCGGGA 60.434 61.111 12.22 0.00 0.00 5.14
2998 3564 2.741985 TGTGTGCGCAGAATCGGG 60.742 61.111 12.22 0.00 0.00 5.14
2999 3565 2.476051 GTGTGTGCGCAGAATCGG 59.524 61.111 12.22 0.00 0.00 4.18
3000 3566 2.094539 CGTGTGTGCGCAGAATCG 59.905 61.111 12.22 14.35 0.00 3.34
3001 3567 1.154599 CACGTGTGTGCGCAGAATC 60.155 57.895 12.22 5.13 39.67 2.52
3002 3568 2.938253 CACGTGTGTGCGCAGAAT 59.062 55.556 12.22 0.00 39.67 2.40
3013 3579 1.080298 TTTTCGAACTGCACACGTGT 58.920 45.000 17.22 17.22 0.00 4.49
3014 3580 2.166741 TTTTTCGAACTGCACACGTG 57.833 45.000 15.48 15.48 0.00 4.49
3040 3606 4.273480 CGATTACTCTCCCATCGCATTTTT 59.727 41.667 0.00 0.00 33.94 1.94
3041 3607 3.809832 CGATTACTCTCCCATCGCATTTT 59.190 43.478 0.00 0.00 33.94 1.82
3042 3608 3.069586 TCGATTACTCTCCCATCGCATTT 59.930 43.478 0.00 0.00 39.73 2.32
3043 3609 2.628178 TCGATTACTCTCCCATCGCATT 59.372 45.455 0.00 0.00 39.73 3.56
3044 3610 2.239400 TCGATTACTCTCCCATCGCAT 58.761 47.619 0.00 0.00 39.73 4.73
3045 3611 1.687563 TCGATTACTCTCCCATCGCA 58.312 50.000 0.00 0.00 39.73 5.10
3046 3612 2.395654 GTTCGATTACTCTCCCATCGC 58.604 52.381 0.00 0.00 39.73 4.58
3047 3613 2.604855 CGGTTCGATTACTCTCCCATCG 60.605 54.545 0.00 0.00 40.98 3.84
3048 3614 2.621998 TCGGTTCGATTACTCTCCCATC 59.378 50.000 0.00 0.00 0.00 3.51
3049 3615 2.361438 GTCGGTTCGATTACTCTCCCAT 59.639 50.000 0.00 0.00 38.42 4.00
3050 3616 1.747355 GTCGGTTCGATTACTCTCCCA 59.253 52.381 0.00 0.00 38.42 4.37
3051 3617 1.747355 TGTCGGTTCGATTACTCTCCC 59.253 52.381 0.00 0.00 38.42 4.30
3052 3618 3.177487 GTTGTCGGTTCGATTACTCTCC 58.823 50.000 0.00 0.00 38.42 3.71
3053 3619 3.119566 AGGTTGTCGGTTCGATTACTCTC 60.120 47.826 0.00 0.00 38.42 3.20
3054 3620 2.824341 AGGTTGTCGGTTCGATTACTCT 59.176 45.455 0.00 0.00 38.42 3.24
3055 3621 3.227810 AGGTTGTCGGTTCGATTACTC 57.772 47.619 0.00 0.00 38.42 2.59
3056 3622 3.119352 GGTAGGTTGTCGGTTCGATTACT 60.119 47.826 0.00 0.00 38.42 2.24
3057 3623 3.182182 GGTAGGTTGTCGGTTCGATTAC 58.818 50.000 0.00 0.00 38.42 1.89
3058 3624 2.824936 TGGTAGGTTGTCGGTTCGATTA 59.175 45.455 0.00 0.00 38.42 1.75
3059 3625 1.619827 TGGTAGGTTGTCGGTTCGATT 59.380 47.619 0.00 0.00 38.42 3.34
3060 3626 1.067354 GTGGTAGGTTGTCGGTTCGAT 60.067 52.381 0.00 0.00 38.42 3.59
3061 3627 0.314935 GTGGTAGGTTGTCGGTTCGA 59.685 55.000 0.00 0.00 0.00 3.71
3062 3628 0.032403 TGTGGTAGGTTGTCGGTTCG 59.968 55.000 0.00 0.00 0.00 3.95
3063 3629 1.869132 GTTGTGGTAGGTTGTCGGTTC 59.131 52.381 0.00 0.00 0.00 3.62
3064 3630 1.487558 AGTTGTGGTAGGTTGTCGGTT 59.512 47.619 0.00 0.00 0.00 4.44
3065 3631 1.125633 AGTTGTGGTAGGTTGTCGGT 58.874 50.000 0.00 0.00 0.00 4.69
3066 3632 3.389925 TTAGTTGTGGTAGGTTGTCGG 57.610 47.619 0.00 0.00 0.00 4.79
3067 3633 5.934935 AAATTAGTTGTGGTAGGTTGTCG 57.065 39.130 0.00 0.00 0.00 4.35
3068 3634 6.428771 TGCTAAATTAGTTGTGGTAGGTTGTC 59.571 38.462 1.68 0.00 0.00 3.18
3069 3635 6.300703 TGCTAAATTAGTTGTGGTAGGTTGT 58.699 36.000 1.68 0.00 0.00 3.32
3070 3636 6.811253 TGCTAAATTAGTTGTGGTAGGTTG 57.189 37.500 1.68 0.00 0.00 3.77
3071 3637 6.773685 TGTTGCTAAATTAGTTGTGGTAGGTT 59.226 34.615 1.68 0.00 0.00 3.50
3072 3638 6.300703 TGTTGCTAAATTAGTTGTGGTAGGT 58.699 36.000 1.68 0.00 0.00 3.08
3073 3639 6.811253 TGTTGCTAAATTAGTTGTGGTAGG 57.189 37.500 1.68 0.00 0.00 3.18
3074 3640 6.795114 CGTTGTTGCTAAATTAGTTGTGGTAG 59.205 38.462 1.68 0.00 0.00 3.18
3075 3641 6.482641 TCGTTGTTGCTAAATTAGTTGTGGTA 59.517 34.615 1.68 0.00 0.00 3.25
3076 3642 5.297278 TCGTTGTTGCTAAATTAGTTGTGGT 59.703 36.000 1.68 0.00 0.00 4.16
3077 3643 5.753744 TCGTTGTTGCTAAATTAGTTGTGG 58.246 37.500 1.68 0.00 0.00 4.17
3078 3644 6.689241 TGTTCGTTGTTGCTAAATTAGTTGTG 59.311 34.615 1.68 0.00 0.00 3.33
3079 3645 6.787225 TGTTCGTTGTTGCTAAATTAGTTGT 58.213 32.000 1.68 0.00 0.00 3.32
3080 3646 7.431084 AGTTGTTCGTTGTTGCTAAATTAGTTG 59.569 33.333 1.68 0.00 0.00 3.16
3081 3647 7.477494 AGTTGTTCGTTGTTGCTAAATTAGTT 58.523 30.769 1.68 0.00 0.00 2.24
3082 3648 7.023197 AGTTGTTCGTTGTTGCTAAATTAGT 57.977 32.000 1.68 0.00 0.00 2.24
3083 3649 6.299966 CGAGTTGTTCGTTGTTGCTAAATTAG 59.700 38.462 0.00 0.00 44.27 1.73
3084 3650 6.130723 CGAGTTGTTCGTTGTTGCTAAATTA 58.869 36.000 0.00 0.00 44.27 1.40
3085 3651 4.967575 CGAGTTGTTCGTTGTTGCTAAATT 59.032 37.500 0.00 0.00 44.27 1.82
3086 3652 4.523813 CGAGTTGTTCGTTGTTGCTAAAT 58.476 39.130 0.00 0.00 44.27 1.40
3087 3653 3.930618 CGAGTTGTTCGTTGTTGCTAAA 58.069 40.909 0.00 0.00 44.27 1.85
3088 3654 3.579147 CGAGTTGTTCGTTGTTGCTAA 57.421 42.857 0.00 0.00 44.27 3.09
3099 3665 4.203618 GGCCTAGCCGAGTTGTTC 57.796 61.111 0.00 0.00 39.62 3.18
3109 3675 3.954258 AGAAACCAATAACATGGCCTAGC 59.046 43.478 3.32 0.00 44.75 3.42
3110 3676 6.152661 TGAAAGAAACCAATAACATGGCCTAG 59.847 38.462 3.32 0.00 44.75 3.02
3111 3677 6.013379 TGAAAGAAACCAATAACATGGCCTA 58.987 36.000 3.32 0.00 44.75 3.93
3112 3678 4.837860 TGAAAGAAACCAATAACATGGCCT 59.162 37.500 3.32 0.00 44.75 5.19
3113 3679 5.146010 TGAAAGAAACCAATAACATGGCC 57.854 39.130 0.00 0.00 44.75 5.36
3114 3680 6.223120 AGTTGAAAGAAACCAATAACATGGC 58.777 36.000 0.00 0.00 44.75 4.40
3115 3681 9.191995 GTAAGTTGAAAGAAACCAATAACATGG 57.808 33.333 0.00 0.00 46.38 3.66
3116 3682 9.743057 TGTAAGTTGAAAGAAACCAATAACATG 57.257 29.630 0.00 0.00 0.00 3.21
3117 3683 9.744468 GTGTAAGTTGAAAGAAACCAATAACAT 57.256 29.630 0.00 0.00 0.00 2.71
3118 3684 8.740906 TGTGTAAGTTGAAAGAAACCAATAACA 58.259 29.630 0.00 0.00 0.00 2.41
3119 3685 9.016623 GTGTGTAAGTTGAAAGAAACCAATAAC 57.983 33.333 0.00 0.00 0.00 1.89
3120 3686 8.962679 AGTGTGTAAGTTGAAAGAAACCAATAA 58.037 29.630 0.00 0.00 0.00 1.40
3121 3687 8.514330 AGTGTGTAAGTTGAAAGAAACCAATA 57.486 30.769 0.00 0.00 0.00 1.90
3122 3688 7.404671 AGTGTGTAAGTTGAAAGAAACCAAT 57.595 32.000 0.00 0.00 0.00 3.16
3123 3689 6.827586 AGTGTGTAAGTTGAAAGAAACCAA 57.172 33.333 0.00 0.00 0.00 3.67
3124 3690 7.107542 AGTAGTGTGTAAGTTGAAAGAAACCA 58.892 34.615 0.00 0.00 0.00 3.67
3125 3691 7.549615 AGTAGTGTGTAAGTTGAAAGAAACC 57.450 36.000 0.00 0.00 0.00 3.27
3126 3692 8.448615 ACAAGTAGTGTGTAAGTTGAAAGAAAC 58.551 33.333 0.00 0.00 39.72 2.78
3127 3693 8.556213 ACAAGTAGTGTGTAAGTTGAAAGAAA 57.444 30.769 0.00 0.00 39.72 2.52
3128 3694 9.090692 GTACAAGTAGTGTGTAAGTTGAAAGAA 57.909 33.333 0.00 0.00 41.89 2.52
3129 3695 7.707893 GGTACAAGTAGTGTGTAAGTTGAAAGA 59.292 37.037 0.00 0.00 41.89 2.52
3130 3696 7.709613 AGGTACAAGTAGTGTGTAAGTTGAAAG 59.290 37.037 0.00 0.00 41.89 2.62
3131 3697 7.558604 AGGTACAAGTAGTGTGTAAGTTGAAA 58.441 34.615 0.00 0.00 41.89 2.69
3132 3698 7.116075 AGGTACAAGTAGTGTGTAAGTTGAA 57.884 36.000 0.00 0.00 41.89 2.69
3133 3699 6.720112 AGGTACAAGTAGTGTGTAAGTTGA 57.280 37.500 0.00 0.00 41.89 3.18
3134 3700 6.423001 GGAAGGTACAAGTAGTGTGTAAGTTG 59.577 42.308 0.00 0.00 41.89 3.16
3135 3701 6.325804 AGGAAGGTACAAGTAGTGTGTAAGTT 59.674 38.462 0.00 0.00 41.89 2.66
3136 3702 5.837438 AGGAAGGTACAAGTAGTGTGTAAGT 59.163 40.000 0.00 0.00 41.89 2.24
3137 3703 6.015688 TCAGGAAGGTACAAGTAGTGTGTAAG 60.016 42.308 0.00 0.00 41.89 2.34
3138 3704 5.834742 TCAGGAAGGTACAAGTAGTGTGTAA 59.165 40.000 0.00 0.00 41.89 2.41
3139 3705 5.387788 TCAGGAAGGTACAAGTAGTGTGTA 58.612 41.667 0.00 0.00 41.89 2.90
3140 3706 4.220724 TCAGGAAGGTACAAGTAGTGTGT 58.779 43.478 0.00 0.00 41.89 3.72
3141 3707 4.866508 TCAGGAAGGTACAAGTAGTGTG 57.133 45.455 0.00 0.00 41.89 3.82
3142 3708 4.900054 AGTTCAGGAAGGTACAAGTAGTGT 59.100 41.667 0.00 0.00 44.82 3.55
3143 3709 5.010719 TGAGTTCAGGAAGGTACAAGTAGTG 59.989 44.000 0.00 0.00 0.00 2.74
3144 3710 5.010820 GTGAGTTCAGGAAGGTACAAGTAGT 59.989 44.000 0.00 0.00 0.00 2.73
3145 3711 5.244178 AGTGAGTTCAGGAAGGTACAAGTAG 59.756 44.000 0.00 0.00 0.00 2.57
3146 3712 5.145564 AGTGAGTTCAGGAAGGTACAAGTA 58.854 41.667 0.00 0.00 0.00 2.24
3147 3713 3.967987 AGTGAGTTCAGGAAGGTACAAGT 59.032 43.478 0.00 0.00 0.00 3.16
3148 3714 4.608948 AGTGAGTTCAGGAAGGTACAAG 57.391 45.455 0.00 0.00 0.00 3.16
3149 3715 4.163458 ACAAGTGAGTTCAGGAAGGTACAA 59.837 41.667 0.00 0.00 0.00 2.41
3150 3716 3.709653 ACAAGTGAGTTCAGGAAGGTACA 59.290 43.478 0.00 0.00 0.00 2.90
3151 3717 4.039366 AGACAAGTGAGTTCAGGAAGGTAC 59.961 45.833 0.00 0.00 0.00 3.34
3152 3718 4.039245 CAGACAAGTGAGTTCAGGAAGGTA 59.961 45.833 0.00 0.00 0.00 3.08
3153 3719 3.041946 AGACAAGTGAGTTCAGGAAGGT 58.958 45.455 0.00 0.00 0.00 3.50
3154 3720 3.397482 CAGACAAGTGAGTTCAGGAAGG 58.603 50.000 0.00 0.00 0.00 3.46
3155 3721 3.397482 CCAGACAAGTGAGTTCAGGAAG 58.603 50.000 0.00 0.00 0.00 3.46
3156 3722 2.104792 CCCAGACAAGTGAGTTCAGGAA 59.895 50.000 0.00 0.00 0.00 3.36
3157 3723 1.694150 CCCAGACAAGTGAGTTCAGGA 59.306 52.381 0.00 0.00 0.00 3.86
3158 3724 1.694150 TCCCAGACAAGTGAGTTCAGG 59.306 52.381 0.00 0.00 0.00 3.86
3159 3725 3.692257 ATCCCAGACAAGTGAGTTCAG 57.308 47.619 0.00 0.00 0.00 3.02
3160 3726 4.136796 CAAATCCCAGACAAGTGAGTTCA 58.863 43.478 0.00 0.00 0.00 3.18
3161 3727 3.503748 CCAAATCCCAGACAAGTGAGTTC 59.496 47.826 0.00 0.00 0.00 3.01
3162 3728 3.138283 TCCAAATCCCAGACAAGTGAGTT 59.862 43.478 0.00 0.00 0.00 3.01
3163 3729 2.711009 TCCAAATCCCAGACAAGTGAGT 59.289 45.455 0.00 0.00 0.00 3.41
3164 3730 3.423539 TCCAAATCCCAGACAAGTGAG 57.576 47.619 0.00 0.00 0.00 3.51
3165 3731 3.486383 GTTCCAAATCCCAGACAAGTGA 58.514 45.455 0.00 0.00 0.00 3.41
3166 3732 2.558359 GGTTCCAAATCCCAGACAAGTG 59.442 50.000 0.00 0.00 0.00 3.16
3167 3733 2.447047 AGGTTCCAAATCCCAGACAAGT 59.553 45.455 0.00 0.00 0.00 3.16
3168 3734 3.160679 AGGTTCCAAATCCCAGACAAG 57.839 47.619 0.00 0.00 0.00 3.16
3169 3735 3.611025 AAGGTTCCAAATCCCAGACAA 57.389 42.857 0.00 0.00 0.00 3.18
3170 3736 3.611025 AAAGGTTCCAAATCCCAGACA 57.389 42.857 0.00 0.00 0.00 3.41
3171 3737 4.955811 AAAAAGGTTCCAAATCCCAGAC 57.044 40.909 0.00 0.00 0.00 3.51
3189 3755 4.701171 ACTGGTGTAAAACGTCCAGAAAAA 59.299 37.500 21.69 0.00 41.76 1.94
3190 3756 4.263435 ACTGGTGTAAAACGTCCAGAAAA 58.737 39.130 21.69 0.00 41.76 2.29
3191 3757 3.876341 ACTGGTGTAAAACGTCCAGAAA 58.124 40.909 21.69 0.00 41.76 2.52
3192 3758 3.547054 ACTGGTGTAAAACGTCCAGAA 57.453 42.857 21.69 0.00 41.76 3.02
3193 3759 3.118702 TGAACTGGTGTAAAACGTCCAGA 60.119 43.478 21.69 1.03 41.76 3.86
3194 3760 3.199677 TGAACTGGTGTAAAACGTCCAG 58.800 45.455 15.17 15.17 43.43 3.86
3195 3761 3.118702 TCTGAACTGGTGTAAAACGTCCA 60.119 43.478 0.00 0.00 0.00 4.02
3196 3762 3.460103 TCTGAACTGGTGTAAAACGTCC 58.540 45.455 0.00 0.00 0.00 4.79
3197 3763 4.084013 CCATCTGAACTGGTGTAAAACGTC 60.084 45.833 0.00 0.00 0.00 4.34
3198 3764 3.813166 CCATCTGAACTGGTGTAAAACGT 59.187 43.478 0.00 0.00 0.00 3.99
3199 3765 3.813166 ACCATCTGAACTGGTGTAAAACG 59.187 43.478 2.21 0.00 45.27 3.60
3200 3766 5.298276 TGAACCATCTGAACTGGTGTAAAAC 59.702 40.000 3.80 0.00 46.29 2.43
3201 3767 5.298276 GTGAACCATCTGAACTGGTGTAAAA 59.702 40.000 3.80 0.00 46.29 1.52
3202 3768 4.819630 GTGAACCATCTGAACTGGTGTAAA 59.180 41.667 3.80 0.00 46.29 2.01
3203 3769 4.141597 TGTGAACCATCTGAACTGGTGTAA 60.142 41.667 3.80 0.00 46.29 2.41
3204 3770 3.389656 TGTGAACCATCTGAACTGGTGTA 59.610 43.478 3.80 0.00 46.29 2.90
3205 3771 2.172505 TGTGAACCATCTGAACTGGTGT 59.827 45.455 3.80 0.00 46.29 4.16
3206 3772 2.849942 TGTGAACCATCTGAACTGGTG 58.150 47.619 3.80 0.00 46.29 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.