Multiple sequence alignment - TraesCS1D01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G249500 chr1D 100.000 5367 0 0 1 5367 342164841 342170207 0.000000e+00 9912.0
1 TraesCS1D01G249500 chr1D 83.728 676 62 15 17 646 31283793 31284466 3.580000e-166 595.0
2 TraesCS1D01G249500 chr1D 79.796 589 88 17 3208 3771 342070134 342070716 3.010000e-107 399.0
3 TraesCS1D01G249500 chr1D 80.566 530 81 16 3202 3719 342129750 342130269 6.520000e-104 388.0
4 TraesCS1D01G249500 chr1D 81.533 287 37 12 998 1280 342072937 342073211 7.000000e-54 222.0
5 TraesCS1D01G249500 chr1D 85.222 203 27 3 1450 1650 342076613 342076814 7.050000e-49 206.0
6 TraesCS1D01G249500 chr1D 84.772 197 30 0 1453 1649 342129041 342129237 1.180000e-46 198.0
7 TraesCS1D01G249500 chr1D 86.111 180 24 1 1471 1650 342069614 342069792 5.490000e-45 193.0
8 TraesCS1D01G249500 chr1D 86.339 183 17 7 998 1179 342126290 342126465 5.490000e-45 193.0
9 TraesCS1D01G249500 chr1D 83.333 162 24 2 998 1159 342068822 342068980 4.330000e-31 147.0
10 TraesCS1D01G249500 chr1D 78.409 176 28 9 500 671 299573191 299573360 7.350000e-19 106.0
11 TraesCS1D01G249500 chr1B 93.983 831 48 2 3176 4005 458165618 458166447 0.000000e+00 1256.0
12 TraesCS1D01G249500 chr1B 87.488 1063 73 16 3642 4685 458125419 458126440 0.000000e+00 1171.0
13 TraesCS1D01G249500 chr1B 90.168 895 53 19 4484 5354 458080539 458081422 0.000000e+00 1133.0
14 TraesCS1D01G249500 chr1B 90.137 801 46 10 647 1443 458011377 458012148 0.000000e+00 1011.0
15 TraesCS1D01G249500 chr1B 87.057 819 65 12 3875 4685 458260268 458261053 0.000000e+00 887.0
16 TraesCS1D01G249500 chr1B 88.920 722 41 22 643 1355 458122208 458122899 0.000000e+00 854.0
17 TraesCS1D01G249500 chr1B 90.137 659 47 8 3890 4537 458079891 458080542 0.000000e+00 841.0
18 TraesCS1D01G249500 chr1B 86.332 717 56 18 643 1355 458203965 458204643 0.000000e+00 743.0
19 TraesCS1D01G249500 chr1B 91.202 466 41 0 3185 3650 458124296 458124761 7.580000e-178 634.0
20 TraesCS1D01G249500 chr1B 85.641 585 66 13 3305 3887 458059390 458059958 2.770000e-167 599.0
21 TraesCS1D01G249500 chr1B 82.976 699 71 29 4675 5353 458128920 458129590 5.990000e-164 588.0
22 TraesCS1D01G249500 chr1B 82.979 611 58 19 4759 5353 458262378 458262958 1.330000e-140 510.0
23 TraesCS1D01G249500 chr1B 85.657 502 32 17 644 1145 458163903 458164364 4.830000e-135 492.0
24 TraesCS1D01G249500 chr1B 89.796 392 28 6 2783 3171 458165181 458165563 4.830000e-135 492.0
25 TraesCS1D01G249500 chr1B 80.114 528 87 12 3202 3719 458007599 458008118 1.410000e-100 377.0
26 TraesCS1D01G249500 chr1B 87.676 284 22 4 1168 1446 458164672 458164947 8.670000e-83 318.0
27 TraesCS1D01G249500 chr1B 95.455 198 8 1 1454 1651 458012204 458012400 1.120000e-81 315.0
28 TraesCS1D01G249500 chr1B 88.800 250 14 2 2922 3171 458013926 458014161 1.460000e-75 294.0
29 TraesCS1D01G249500 chr1B 92.537 201 11 1 1451 1651 458164997 458165193 8.800000e-73 285.0
30 TraesCS1D01G249500 chr1B 88.362 232 19 5 2784 3014 458123911 458124135 6.850000e-69 272.0
31 TraesCS1D01G249500 chr1B 96.000 150 6 0 2778 2927 458012383 458012532 1.490000e-60 244.0
32 TraesCS1D01G249500 chr1B 94.268 157 9 0 4003 4159 458166561 458166717 1.930000e-59 241.0
33 TraesCS1D01G249500 chr1B 93.182 132 9 0 3176 3307 458014216 458014347 1.530000e-45 195.0
34 TraesCS1D01G249500 chr1B 86.111 180 24 1 1471 1650 457863746 457863924 5.490000e-45 193.0
35 TraesCS1D01G249500 chr1B 79.322 295 38 14 998 1280 458005990 458006273 9.180000e-43 185.0
36 TraesCS1D01G249500 chr1B 82.099 162 26 2 998 1159 457862957 457863115 9.380000e-28 135.0
37 TraesCS1D01G249500 chr1B 96.970 66 2 0 2784 2849 458205239 458205304 1.580000e-20 111.0
38 TraesCS1D01G249500 chr1B 95.385 65 3 0 3107 3171 458124176 458124240 2.640000e-18 104.0
39 TraesCS1D01G249500 chr1B 82.524 103 18 0 1654 1756 534306525 534306627 2.060000e-14 91.6
40 TraesCS1D01G249500 chr5D 87.934 1036 63 11 1653 2634 544490553 544489526 0.000000e+00 1164.0
41 TraesCS1D01G249500 chr5D 83.671 692 58 19 6 644 521709883 521710572 7.690000e-168 601.0
42 TraesCS1D01G249500 chr5D 83.761 585 58 21 1 573 245001464 245002023 2.220000e-143 520.0
43 TraesCS1D01G249500 chr5D 85.434 357 33 8 298 644 493275872 493275525 2.380000e-93 353.0
44 TraesCS1D01G249500 chr5D 81.148 122 19 3 2672 2791 454314365 454314246 1.590000e-15 95.3
45 TraesCS1D01G249500 chr1A 86.887 938 70 28 3107 4016 441836225 441837137 0.000000e+00 1002.0
46 TraesCS1D01G249500 chr1A 93.110 566 29 7 4011 4566 441837909 441838474 0.000000e+00 821.0
47 TraesCS1D01G249500 chr1A 90.498 442 23 2 4562 5003 441841051 441841473 2.810000e-157 566.0
48 TraesCS1D01G249500 chr1A 88.204 373 17 10 5002 5352 441841567 441841934 2.310000e-113 420.0
49 TraesCS1D01G249500 chr1A 80.000 590 85 18 3208 3771 441765317 441765899 6.470000e-109 405.0
50 TraesCS1D01G249500 chr1A 80.418 526 87 12 3202 3719 441799285 441799802 2.340000e-103 387.0
51 TraesCS1D01G249500 chr1A 80.546 586 43 27 706 1275 441835010 441835540 8.430000e-103 385.0
52 TraesCS1D01G249500 chr1A 96.602 206 7 0 1446 1651 441835803 441836008 5.150000e-90 342.0
53 TraesCS1D01G249500 chr1A 86.842 190 16 5 2910 3090 441836051 441836240 2.530000e-48 204.0
54 TraesCS1D01G249500 chr1A 89.506 162 12 4 998 1158 441768098 441768255 3.280000e-47 200.0
55 TraesCS1D01G249500 chr1A 84.390 205 29 3 1450 1652 441768870 441769073 1.180000e-46 198.0
56 TraesCS1D01G249500 chr1A 86.885 183 16 7 998 1179 441797782 441797957 1.180000e-46 198.0
57 TraesCS1D01G249500 chr1A 83.500 200 32 1 1453 1651 441798591 441798790 9.180000e-43 185.0
58 TraesCS1D01G249500 chr3A 86.448 701 48 19 2123 2796 740880419 740879739 0.000000e+00 725.0
59 TraesCS1D01G249500 chr3A 89.634 492 34 6 2306 2793 175842883 175843361 1.280000e-170 610.0
60 TraesCS1D01G249500 chr3A 90.171 468 42 3 1659 2123 740880953 740880487 1.650000e-169 606.0
61 TraesCS1D01G249500 chr3A 88.372 473 47 5 1654 2123 175812659 175813126 3.630000e-156 562.0
62 TraesCS1D01G249500 chr3A 83.715 393 42 15 265 644 609936669 609937052 8.550000e-93 351.0
63 TraesCS1D01G249500 chr3A 87.850 107 8 2 4419 4525 49817750 49817851 2.630000e-23 121.0
64 TraesCS1D01G249500 chr3A 82.727 110 19 0 1655 1764 725734462 725734571 1.230000e-16 99.0
65 TraesCS1D01G249500 chr3A 79.699 133 26 1 1909 2040 51742853 51742985 1.590000e-15 95.3
66 TraesCS1D01G249500 chr7D 86.433 656 76 9 1 646 71109854 71109202 0.000000e+00 706.0
67 TraesCS1D01G249500 chr7D 84.480 683 57 23 6 644 618462185 618461508 3.530000e-176 628.0
68 TraesCS1D01G249500 chr7D 84.018 682 67 20 1 646 575003916 575004591 7.640000e-173 617.0
69 TraesCS1D01G249500 chr7D 82.712 671 59 14 8 624 535735041 535735708 1.310000e-150 544.0
70 TraesCS1D01G249500 chr7D 85.714 112 16 0 1655 1766 633809862 633809973 9.440000e-23 119.0
71 TraesCS1D01G249500 chr4D 85.780 654 60 17 17 644 439741564 439740918 0.000000e+00 662.0
72 TraesCS1D01G249500 chr4D 80.488 82 14 2 2712 2792 140118962 140118882 1.610000e-05 62.1
73 TraesCS1D01G249500 chr2B 89.072 485 35 4 2306 2788 17388331 17388799 2.150000e-163 586.0
74 TraesCS1D01G249500 chr2B 94.030 201 12 0 2123 2323 17388188 17388388 6.750000e-79 305.0
75 TraesCS1D01G249500 chr2B 97.196 107 3 0 2017 2123 17388014 17388120 1.190000e-41 182.0
76 TraesCS1D01G249500 chr2B 79.518 249 43 4 4858 5098 35131046 35130798 2.570000e-38 171.0
77 TraesCS1D01G249500 chr2B 84.956 113 17 0 1654 1766 412658359 412658247 1.220000e-21 115.0
78 TraesCS1D01G249500 chr2B 84.956 113 17 0 1654 1766 799711463 799711351 1.220000e-21 115.0
79 TraesCS1D01G249500 chr2B 84.071 113 18 0 1654 1766 412643262 412643150 5.680000e-20 110.0
80 TraesCS1D01G249500 chr2B 84.071 113 18 0 1654 1766 412705756 412705644 5.680000e-20 110.0
81 TraesCS1D01G249500 chr2D 82.920 685 70 21 1 644 612984185 612983507 1.680000e-159 573.0
82 TraesCS1D01G249500 chr2D 81.719 640 72 23 37 647 615991041 615990418 4.830000e-135 492.0
83 TraesCS1D01G249500 chr3D 82.143 644 88 17 11 634 296159096 296159732 1.320000e-145 527.0
84 TraesCS1D01G249500 chr3D 82.362 618 80 13 37 644 447976325 447976923 1.330000e-140 510.0
85 TraesCS1D01G249500 chr3D 81.184 659 65 19 11 644 436237820 436238444 4.860000e-130 475.0
86 TraesCS1D01G249500 chr3D 78.597 556 95 18 12 562 294605617 294605081 3.980000e-91 346.0
87 TraesCS1D01G249500 chr2A 88.281 384 31 9 1654 2024 705287826 705288208 1.060000e-121 448.0
88 TraesCS1D01G249500 chr3B 86.265 415 43 5 243 646 254018632 254018221 6.380000e-119 438.0
89 TraesCS1D01G249500 chr4B 81.137 387 40 17 288 644 107239390 107239007 4.090000e-71 279.0
90 TraesCS1D01G249500 chr7A 80.833 240 39 6 4870 5103 515737757 515737519 1.190000e-41 182.0
91 TraesCS1D01G249500 chr4A 78.715 249 45 4 4858 5098 655564353 655564601 5.560000e-35 159.0
92 TraesCS1D01G249500 chrUn 77.470 253 50 6 4858 5103 218391831 218391579 1.560000e-30 145.0
93 TraesCS1D01G249500 chr5B 77.551 245 48 3 4858 5095 527839298 527839542 2.020000e-29 141.0
94 TraesCS1D01G249500 chr5B 85.217 115 10 3 4429 4536 406538044 406537930 1.580000e-20 111.0
95 TraesCS1D01G249500 chr5B 81.416 113 21 0 1654 1766 696647310 696647198 5.720000e-15 93.5
96 TraesCS1D01G249500 chr6B 84.956 113 17 0 1654 1766 87508095 87508207 1.220000e-21 115.0
97 TraesCS1D01G249500 chr6D 83.740 123 13 5 4419 4537 380573376 380573257 5.680000e-20 110.0
98 TraesCS1D01G249500 chr6A 82.927 123 14 5 4419 4537 522059613 522059494 2.640000e-18 104.0
99 TraesCS1D01G249500 chr7B 80.702 114 21 1 1653 1766 125011729 125011841 2.660000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G249500 chr1D 342164841 342170207 5366 False 9912.000000 9912 100.000000 1 5367 1 chr1D.!!$F3 5366
1 TraesCS1D01G249500 chr1D 31283793 31284466 673 False 595.000000 595 83.728000 17 646 1 chr1D.!!$F1 629
2 TraesCS1D01G249500 chr1D 342126290 342130269 3979 False 259.666667 388 83.892333 998 3719 3 chr1D.!!$F5 2721
3 TraesCS1D01G249500 chr1D 342068822 342076814 7992 False 233.400000 399 83.199000 998 3771 5 chr1D.!!$F4 2773
4 TraesCS1D01G249500 chr1B 458079891 458081422 1531 False 987.000000 1133 90.152500 3890 5354 2 chr1B.!!$F5 1464
5 TraesCS1D01G249500 chr1B 458260268 458262958 2690 False 698.500000 887 85.018000 3875 5353 2 chr1B.!!$F9 1478
6 TraesCS1D01G249500 chr1B 458122208 458129590 7382 False 603.833333 1171 89.055500 643 5353 6 chr1B.!!$F6 4710
7 TraesCS1D01G249500 chr1B 458059390 458059958 568 False 599.000000 599 85.641000 3305 3887 1 chr1B.!!$F1 582
8 TraesCS1D01G249500 chr1B 458163903 458166717 2814 False 514.000000 1256 90.652833 644 4159 6 chr1B.!!$F7 3515
9 TraesCS1D01G249500 chr1B 458203965 458205304 1339 False 427.000000 743 91.651000 643 2849 2 chr1B.!!$F8 2206
10 TraesCS1D01G249500 chr1B 458005990 458014347 8357 False 374.428571 1011 89.001429 647 3719 7 chr1B.!!$F4 3072
11 TraesCS1D01G249500 chr5D 544489526 544490553 1027 True 1164.000000 1164 87.934000 1653 2634 1 chr5D.!!$R3 981
12 TraesCS1D01G249500 chr5D 521709883 521710572 689 False 601.000000 601 83.671000 6 644 1 chr5D.!!$F2 638
13 TraesCS1D01G249500 chr5D 245001464 245002023 559 False 520.000000 520 83.761000 1 573 1 chr5D.!!$F1 572
14 TraesCS1D01G249500 chr1A 441835010 441841934 6924 False 534.285714 1002 88.955571 706 5352 7 chr1A.!!$F3 4646
15 TraesCS1D01G249500 chr1A 441765317 441769073 3756 False 267.666667 405 84.632000 998 3771 3 chr1A.!!$F1 2773
16 TraesCS1D01G249500 chr1A 441797782 441799802 2020 False 256.666667 387 83.601000 998 3719 3 chr1A.!!$F2 2721
17 TraesCS1D01G249500 chr3A 740879739 740880953 1214 True 665.500000 725 88.309500 1659 2796 2 chr3A.!!$R1 1137
18 TraesCS1D01G249500 chr7D 71109202 71109854 652 True 706.000000 706 86.433000 1 646 1 chr7D.!!$R1 645
19 TraesCS1D01G249500 chr7D 618461508 618462185 677 True 628.000000 628 84.480000 6 644 1 chr7D.!!$R2 638
20 TraesCS1D01G249500 chr7D 575003916 575004591 675 False 617.000000 617 84.018000 1 646 1 chr7D.!!$F2 645
21 TraesCS1D01G249500 chr7D 535735041 535735708 667 False 544.000000 544 82.712000 8 624 1 chr7D.!!$F1 616
22 TraesCS1D01G249500 chr4D 439740918 439741564 646 True 662.000000 662 85.780000 17 644 1 chr4D.!!$R2 627
23 TraesCS1D01G249500 chr2B 17388014 17388799 785 False 357.666667 586 93.432667 2017 2788 3 chr2B.!!$F1 771
24 TraesCS1D01G249500 chr2D 612983507 612984185 678 True 573.000000 573 82.920000 1 644 1 chr2D.!!$R1 643
25 TraesCS1D01G249500 chr2D 615990418 615991041 623 True 492.000000 492 81.719000 37 647 1 chr2D.!!$R2 610
26 TraesCS1D01G249500 chr3D 296159096 296159732 636 False 527.000000 527 82.143000 11 634 1 chr3D.!!$F1 623
27 TraesCS1D01G249500 chr3D 447976325 447976923 598 False 510.000000 510 82.362000 37 644 1 chr3D.!!$F3 607
28 TraesCS1D01G249500 chr3D 436237820 436238444 624 False 475.000000 475 81.184000 11 644 1 chr3D.!!$F2 633
29 TraesCS1D01G249500 chr3D 294605081 294605617 536 True 346.000000 346 78.597000 12 562 1 chr3D.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 5576 0.108615 CGACGACCAAGGAAGCATCT 60.109 55.0 0.00 0.00 0.00 2.90 F
864 5608 0.250989 TCAAACGGAATCACCCCCAC 60.251 55.0 0.00 0.00 34.64 4.61 F
1437 9676 0.299597 GGCTACGACAATTTACCGCG 59.700 55.0 0.00 0.00 0.00 6.46 F
1803 10107 0.439985 TTTCGTCCGACGTAGACTCG 59.560 55.0 19.89 8.19 43.14 4.18 F
3483 13487 0.979709 TCCAGGCAGCTGCTATGTCT 60.980 55.0 35.82 22.11 41.70 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 10178 0.315886 ACGGACGAGCATGTACACAA 59.684 50.000 0.00 0.00 0.00 3.33 R
2610 11012 0.400213 TTGACCTTTGACCTCGCCAT 59.600 50.000 0.00 0.00 0.00 4.40 R
2670 11073 0.538584 ACCGGATACTTTTCGTCCCC 59.461 55.000 9.46 0.00 0.00 4.81 R
3587 13624 3.496130 GGGCATTTCGTCTCTGACATATG 59.504 47.826 0.00 0.00 32.09 1.78 R
5096 26070 1.268899 GTGTACTGTGTACGCTCTGGT 59.731 52.381 8.10 4.43 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 148 2.991076 GCGTACCTCGAGCACTGGT 61.991 63.158 6.99 2.26 42.86 4.00
562 693 0.926628 CCAAACACGAAAACGGACGC 60.927 55.000 0.00 0.00 0.00 5.19
658 5400 4.079253 GTTGCTCTTACCCCTTGATTTCA 58.921 43.478 0.00 0.00 0.00 2.69
663 5405 6.071391 TGCTCTTACCCCTTGATTTCATTTTC 60.071 38.462 0.00 0.00 0.00 2.29
820 5564 2.494918 CATCTGACCCCGACGACC 59.505 66.667 0.00 0.00 0.00 4.79
828 5572 2.434359 CCCGACGACCAAGGAAGC 60.434 66.667 0.00 0.00 0.00 3.86
829 5573 2.342279 CCGACGACCAAGGAAGCA 59.658 61.111 0.00 0.00 0.00 3.91
830 5574 1.079127 CCGACGACCAAGGAAGCAT 60.079 57.895 0.00 0.00 0.00 3.79
831 5575 1.084370 CCGACGACCAAGGAAGCATC 61.084 60.000 0.00 0.00 0.00 3.91
832 5576 0.108615 CGACGACCAAGGAAGCATCT 60.109 55.000 0.00 0.00 0.00 2.90
861 5605 0.455815 GCATCAAACGGAATCACCCC 59.544 55.000 0.00 0.00 34.64 4.95
862 5606 1.102978 CATCAAACGGAATCACCCCC 58.897 55.000 0.00 0.00 34.64 5.40
863 5607 0.701731 ATCAAACGGAATCACCCCCA 59.298 50.000 0.00 0.00 34.64 4.96
864 5608 0.250989 TCAAACGGAATCACCCCCAC 60.251 55.000 0.00 0.00 34.64 4.61
865 5609 1.076014 AAACGGAATCACCCCCACC 59.924 57.895 0.00 0.00 34.64 4.61
871 5615 1.552254 GGAATCACCCCCACCAACAAT 60.552 52.381 0.00 0.00 0.00 2.71
914 5658 1.880271 TCGAAACAAATACGTGCCCA 58.120 45.000 0.00 0.00 0.00 5.36
915 5659 1.801771 TCGAAACAAATACGTGCCCAG 59.198 47.619 0.00 0.00 0.00 4.45
1101 5855 4.860261 GGGATCGCGGCGTACGTT 62.860 66.667 22.90 0.00 46.52 3.99
1196 6235 1.611965 AGCTCCCAAATGCTCCTCC 59.388 57.895 0.00 0.00 33.90 4.30
1224 6280 4.453136 TGCTTGGCTTAACGGTTAACTAAG 59.547 41.667 21.02 21.02 0.00 2.18
1293 8775 7.592885 GGTATACATTTACCTGTACTCTGGA 57.407 40.000 5.01 0.00 38.89 3.86
1301 8783 7.549147 TTTACCTGTACTCTGGACAAATAGT 57.451 36.000 7.04 0.00 36.65 2.12
1302 8784 8.654485 TTTACCTGTACTCTGGACAAATAGTA 57.346 34.615 7.04 0.00 36.65 1.82
1303 8785 6.777213 ACCTGTACTCTGGACAAATAGTAG 57.223 41.667 7.04 0.00 36.65 2.57
1304 8786 6.254522 ACCTGTACTCTGGACAAATAGTAGT 58.745 40.000 7.04 0.00 36.65 2.73
1305 8787 7.408543 ACCTGTACTCTGGACAAATAGTAGTA 58.591 38.462 7.04 0.00 36.65 1.82
1307 8789 7.556996 CCTGTACTCTGGACAAATAGTAGTACT 59.443 40.741 8.14 8.14 38.91 2.73
1308 8790 8.277490 TGTACTCTGGACAAATAGTAGTACTG 57.723 38.462 13.29 0.00 38.91 2.74
1327 8809 3.511934 ACTGTAGATCACTGGAGTGTTCC 59.488 47.826 12.31 2.28 45.76 3.62
1330 8812 1.821753 AGATCACTGGAGTGTTCCTCG 59.178 52.381 12.31 0.00 45.76 4.63
1353 9523 3.006940 ACGATTTGCGGCTGAGATTTTA 58.993 40.909 0.00 0.00 46.49 1.52
1437 9676 0.299597 GGCTACGACAATTTACCGCG 59.700 55.000 0.00 0.00 0.00 6.46
1447 9686 4.976987 ACAATTTACCGCGACCAATTAAG 58.023 39.130 8.23 0.66 0.00 1.85
1474 9760 7.517417 CGGATTCTGATGAAATTTCTTACCTCG 60.517 40.741 18.64 8.30 35.63 4.63
1493 9786 4.297510 CTCGTGAAGGAAGATAGCTGATG 58.702 47.826 0.00 0.00 0.00 3.07
1651 9944 6.202762 CCTGCAACCTTGTTCCTTTTATTTTC 59.797 38.462 0.00 0.00 0.00 2.29
1727 10020 4.766375 TCAATTTTAAAACCGGCAAACCA 58.234 34.783 0.00 0.00 34.57 3.67
1766 10059 3.920231 AACCGGATAAGTTTAGTCCCC 57.080 47.619 9.46 0.00 0.00 4.81
1767 10060 3.126323 ACCGGATAAGTTTAGTCCCCT 57.874 47.619 9.46 0.00 0.00 4.79
1768 10061 3.457836 ACCGGATAAGTTTAGTCCCCTT 58.542 45.455 9.46 0.00 0.00 3.95
1769 10062 4.623863 ACCGGATAAGTTTAGTCCCCTTA 58.376 43.478 9.46 0.00 0.00 2.69
1770 10063 4.406972 ACCGGATAAGTTTAGTCCCCTTAC 59.593 45.833 9.46 0.00 0.00 2.34
1774 10078 5.397221 GGATAAGTTTAGTCCCCTTACCACC 60.397 48.000 0.00 0.00 0.00 4.61
1777 10081 3.586174 AGTTTAGTCCCCTTACCACCTTC 59.414 47.826 0.00 0.00 0.00 3.46
1781 10085 2.113052 AGTCCCCTTACCACCTTCAGTA 59.887 50.000 0.00 0.00 0.00 2.74
1791 10095 3.064931 CCACCTTCAGTAGTTTTCGTCC 58.935 50.000 0.00 0.00 0.00 4.79
1797 10101 2.805671 TCAGTAGTTTTCGTCCGACGTA 59.194 45.455 19.89 8.52 43.14 3.57
1803 10107 0.439985 TTTCGTCCGACGTAGACTCG 59.560 55.000 19.89 8.19 43.14 4.18
1811 10115 2.240040 CGACGTAGACTCGGTTTTGAG 58.760 52.381 0.00 0.00 41.86 3.02
1814 10118 1.986378 CGTAGACTCGGTTTTGAGCAG 59.014 52.381 0.00 0.00 39.68 4.24
1874 10178 1.446099 CAGCGACCGCACTGTATGT 60.446 57.895 16.97 0.00 44.88 2.29
1898 10204 3.857854 CATGCTCGTCCGTGCTGC 61.858 66.667 13.86 0.00 35.85 5.25
1899 10205 4.074526 ATGCTCGTCCGTGCTGCT 62.075 61.111 13.86 0.00 35.85 4.24
1919 10226 1.076485 GGCTCATGGGATGTTGGCT 60.076 57.895 0.00 0.00 0.00 4.75
2044 10351 6.225981 TCATGTGAAAAGCTAGCTAGATGA 57.774 37.500 25.15 17.96 0.00 2.92
2147 10522 3.799753 GAGCGGTCGAACATGCAT 58.200 55.556 0.00 0.00 0.00 3.96
2268 10658 1.730501 TGTCTAGCTTGCACATGAGC 58.269 50.000 8.32 8.32 39.17 4.26
2362 10756 2.024414 TCGAGGAATCGATCAGCTTCA 58.976 47.619 0.00 0.00 37.20 3.02
2451 10853 1.340405 ACAGTCTGTTGGATGGCCATC 60.340 52.381 33.90 33.90 45.46 3.51
2460 10862 3.385749 GATGGCCATCCGTCACCGT 62.386 63.158 32.15 0.23 45.71 4.83
2610 11012 1.445410 GTGTGACGTGGCGCTGATA 60.445 57.895 7.64 0.00 0.00 2.15
2670 11073 2.976494 AAACCACCTTGACTGGCGGG 62.976 60.000 0.00 0.00 33.76 6.13
2705 11108 3.753815 TCCGGTTTTACAAGTTAAGGGG 58.246 45.455 0.00 0.00 0.00 4.79
2724 11128 4.083565 GGGGCTATGTTTGTCTGGTTTTA 58.916 43.478 0.00 0.00 0.00 1.52
2747 11151 5.784578 AAGTTGAGGGACCATTTTTACAC 57.215 39.130 0.00 0.00 0.00 2.90
2783 11187 9.990868 AGTTGAGGGACCAAAAATATACTTATT 57.009 29.630 0.00 0.00 0.00 1.40
2808 11217 7.036220 TCCTTTTATTTTTGCAAACGTTCAGA 58.964 30.769 12.39 0.00 0.00 3.27
3043 12868 8.514594 TGATATTTTCATGTTCAGTTTCTCCAC 58.485 33.333 0.00 0.00 0.00 4.02
3095 12927 2.791179 AGATGGCTAAATTGGATCCCCA 59.209 45.455 9.90 7.73 41.64 4.96
3097 12929 1.643286 TGGCTAAATTGGATCCCCACA 59.357 47.619 9.90 0.00 43.41 4.17
3098 12930 2.043664 TGGCTAAATTGGATCCCCACAA 59.956 45.455 9.90 0.00 43.41 3.33
3099 12931 3.103742 GGCTAAATTGGATCCCCACAAA 58.896 45.455 9.90 0.00 43.41 2.83
3171 13003 2.119495 GCCTCCTCACCTCATAGGAAA 58.881 52.381 0.00 0.00 41.33 3.13
3174 13006 3.135530 CCTCCTCACCTCATAGGAAAAGG 59.864 52.174 0.00 3.76 41.33 3.11
3483 13487 0.979709 TCCAGGCAGCTGCTATGTCT 60.980 55.000 35.82 22.11 41.70 3.41
3587 13624 3.226346 TCTTACACTACGACATGTGCC 57.774 47.619 1.15 0.00 37.68 5.01
3812 14538 1.388547 GGTGCCAAACTGTGTCTCAA 58.611 50.000 0.00 0.00 0.00 3.02
3858 14591 5.193679 ACTTTCAAGTTTCAACCTGTAGCT 58.806 37.500 0.00 0.00 35.21 3.32
3914 14647 5.500234 CTTCTTCCCAAATCATGTACTCCA 58.500 41.667 0.00 0.00 0.00 3.86
3956 14720 5.734720 CCATCAAGCCTCTACAACTAGAAA 58.265 41.667 0.00 0.00 0.00 2.52
3961 14725 6.211584 TCAAGCCTCTACAACTAGAAATCACT 59.788 38.462 0.00 0.00 0.00 3.41
4309 15930 2.774044 TGACGCAACTGCTGTCAAA 58.226 47.368 19.64 5.35 44.66 2.69
4379 16151 3.620488 CTGAAGTAGCAGCCCCAATTTA 58.380 45.455 0.00 0.00 0.00 1.40
4390 16162 2.924421 CCCCAATTTAGGAGTCTGCTC 58.076 52.381 0.00 0.00 40.93 4.26
4425 16198 4.732672 AATGTACTCCCTCCGTTCTAAC 57.267 45.455 0.00 0.00 0.00 2.34
4427 16200 3.350833 TGTACTCCCTCCGTTCTAACTC 58.649 50.000 0.00 0.00 0.00 3.01
4742 24176 2.432146 TCTGAGCCACCTATGACACATC 59.568 50.000 0.00 0.00 0.00 3.06
4743 24177 1.136891 TGAGCCACCTATGACACATCG 59.863 52.381 0.00 0.00 0.00 3.84
4744 24178 0.465705 AGCCACCTATGACACATCGG 59.534 55.000 0.00 0.00 0.00 4.18
4745 24179 0.178068 GCCACCTATGACACATCGGT 59.822 55.000 0.00 0.00 0.00 4.69
4746 24180 1.406887 GCCACCTATGACACATCGGTT 60.407 52.381 5.42 0.00 0.00 4.44
4747 24181 2.550978 CCACCTATGACACATCGGTTC 58.449 52.381 5.42 0.00 0.00 3.62
4748 24182 2.093711 CCACCTATGACACATCGGTTCA 60.094 50.000 5.42 0.00 0.00 3.18
4749 24183 3.595173 CACCTATGACACATCGGTTCAA 58.405 45.455 5.42 0.00 0.00 2.69
4750 24184 3.370978 CACCTATGACACATCGGTTCAAC 59.629 47.826 5.42 0.00 0.00 3.18
4751 24185 3.007506 ACCTATGACACATCGGTTCAACA 59.992 43.478 0.00 0.00 0.00 3.33
4752 24186 4.000325 CCTATGACACATCGGTTCAACAA 59.000 43.478 0.00 0.00 0.00 2.83
4753 24187 4.454161 CCTATGACACATCGGTTCAACAAA 59.546 41.667 0.00 0.00 0.00 2.83
4754 24188 4.909696 ATGACACATCGGTTCAACAAAA 57.090 36.364 0.00 0.00 0.00 2.44
4755 24189 4.703645 TGACACATCGGTTCAACAAAAA 57.296 36.364 0.00 0.00 0.00 1.94
4756 24190 5.255710 TGACACATCGGTTCAACAAAAAT 57.744 34.783 0.00 0.00 0.00 1.82
4757 24191 5.277825 TGACACATCGGTTCAACAAAAATC 58.722 37.500 0.00 0.00 0.00 2.17
4842 24658 2.870411 CGCAGCCCCTAATAAACTGTAC 59.130 50.000 0.00 0.00 0.00 2.90
4843 24659 3.431766 CGCAGCCCCTAATAAACTGTACT 60.432 47.826 0.00 0.00 0.00 2.73
4844 24660 4.202182 CGCAGCCCCTAATAAACTGTACTA 60.202 45.833 0.00 0.00 0.00 1.82
4888 24704 6.292919 CCGGCTCTTTTTAGTCTGCATATAAC 60.293 42.308 0.00 0.00 0.00 1.89
5100 26074 6.812879 AATACGGGAAGTAAAAAGAACCAG 57.187 37.500 0.00 0.00 39.04 4.00
5101 26075 4.426736 ACGGGAAGTAAAAAGAACCAGA 57.573 40.909 0.00 0.00 0.00 3.86
5103 26077 3.188667 CGGGAAGTAAAAAGAACCAGAGC 59.811 47.826 0.00 0.00 0.00 4.09
5104 26078 3.188667 GGGAAGTAAAAAGAACCAGAGCG 59.811 47.826 0.00 0.00 0.00 5.03
5354 26351 2.027561 TCGTCGATTGACCCCAGAATTT 60.028 45.455 7.54 0.00 42.37 1.82
5355 26352 2.747446 CGTCGATTGACCCCAGAATTTT 59.253 45.455 7.54 0.00 42.37 1.82
5356 26353 3.190535 CGTCGATTGACCCCAGAATTTTT 59.809 43.478 7.54 0.00 42.37 1.94
5357 26354 4.485163 GTCGATTGACCCCAGAATTTTTG 58.515 43.478 1.10 0.00 39.30 2.44
5358 26355 4.022329 GTCGATTGACCCCAGAATTTTTGT 60.022 41.667 1.10 0.00 39.30 2.83
5359 26356 4.586841 TCGATTGACCCCAGAATTTTTGTT 59.413 37.500 0.00 0.00 0.00 2.83
5360 26357 4.923281 CGATTGACCCCAGAATTTTTGTTC 59.077 41.667 0.00 0.00 0.00 3.18
5361 26358 5.508825 CGATTGACCCCAGAATTTTTGTTCA 60.509 40.000 0.00 0.00 0.00 3.18
5362 26359 5.683876 TTGACCCCAGAATTTTTGTTCAA 57.316 34.783 0.00 0.00 0.00 2.69
5363 26360 5.885449 TGACCCCAGAATTTTTGTTCAAT 57.115 34.783 0.00 0.00 0.00 2.57
5364 26361 6.985653 TGACCCCAGAATTTTTGTTCAATA 57.014 33.333 0.00 0.00 0.00 1.90
5365 26362 7.366847 TGACCCCAGAATTTTTGTTCAATAA 57.633 32.000 0.00 0.00 0.00 1.40
5366 26363 7.796054 TGACCCCAGAATTTTTGTTCAATAAA 58.204 30.769 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.557269 GCTCGATGGGGGATGGCTAT 61.557 60.000 0.00 0.00 0.00 2.97
262 347 1.737735 CAGAGCGCGTTCATGTCCA 60.738 57.895 24.99 0.00 0.00 4.02
263 348 2.456119 CCAGAGCGCGTTCATGTCC 61.456 63.158 24.99 0.00 0.00 4.02
437 555 2.923605 TTAAACATTAAAGCCGGCCG 57.076 45.000 26.15 21.04 0.00 6.13
820 5564 3.120752 CGATGCGATAAGATGCTTCCTTG 60.121 47.826 0.00 0.00 33.18 3.61
828 5572 4.146719 GTTTGATGCGATGCGATAAGATG 58.853 43.478 0.00 0.00 0.00 2.90
829 5573 3.120889 CGTTTGATGCGATGCGATAAGAT 60.121 43.478 0.00 0.00 0.00 2.40
830 5574 2.218530 CGTTTGATGCGATGCGATAAGA 59.781 45.455 0.00 0.00 0.00 2.10
831 5575 2.553752 CGTTTGATGCGATGCGATAAG 58.446 47.619 0.00 0.00 0.00 1.73
832 5576 1.260297 CCGTTTGATGCGATGCGATAA 59.740 47.619 0.00 0.00 0.00 1.75
861 5605 3.068064 GCGGGGGATTGTTGGTGG 61.068 66.667 0.00 0.00 0.00 4.61
862 5606 3.068064 GGCGGGGGATTGTTGGTG 61.068 66.667 0.00 0.00 0.00 4.17
863 5607 3.264845 AGGCGGGGGATTGTTGGT 61.265 61.111 0.00 0.00 0.00 3.67
864 5608 2.440247 GAGGCGGGGGATTGTTGG 60.440 66.667 0.00 0.00 0.00 3.77
865 5609 2.824041 CGAGGCGGGGGATTGTTG 60.824 66.667 0.00 0.00 0.00 3.33
1115 5869 1.648467 GATGACTGCGGCTTTGGACC 61.648 60.000 0.00 0.00 0.00 4.46
1122 5876 3.069980 GACGAGGATGACTGCGGCT 62.070 63.158 0.00 0.00 0.00 5.52
1196 6235 1.026718 CCGTTAAGCCAAGCAGAGGG 61.027 60.000 0.00 0.00 0.00 4.30
1224 6280 4.847444 GGGAGAGGCCAAGCGCTC 62.847 72.222 12.06 0.00 38.95 5.03
1293 8775 8.904834 CCAGTGATCTACAGTACTACTATTTGT 58.095 37.037 0.00 0.00 0.00 2.83
1353 9523 8.850156 AGTATGTTCAAATTTAACAAGAGTGCT 58.150 29.630 13.50 6.83 40.05 4.40
1374 9580 4.434713 AAAGGCGGCAAAAACTAGTATG 57.565 40.909 13.08 0.00 0.00 2.39
1387 9593 9.923143 ATAATAATAAAAGGATAAAAAGGCGGC 57.077 29.630 0.00 0.00 0.00 6.53
1437 9676 4.816385 TCATCAGAATCCGCTTAATTGGTC 59.184 41.667 0.00 0.00 0.00 4.02
1447 9686 6.038714 AGGTAAGAAATTTCATCAGAATCCGC 59.961 38.462 19.99 0.00 32.89 5.54
1474 9760 5.669477 ACTTCATCAGCTATCTTCCTTCAC 58.331 41.667 0.00 0.00 0.00 3.18
1493 9786 2.097791 AGTATCCAGACGAAGCGACTTC 59.902 50.000 8.87 8.87 37.16 3.01
1669 9962 9.490379 TCTATACTTTCAAAAGAGTTGAAGGAC 57.510 33.333 15.27 0.00 39.30 3.85
1703 9996 5.646360 TGGTTTGCCGGTTTTAAAATTGAAA 59.354 32.000 1.90 0.00 37.67 2.69
1704 9997 5.183228 TGGTTTGCCGGTTTTAAAATTGAA 58.817 33.333 1.90 0.00 37.67 2.69
1712 10005 1.614413 GACCATGGTTTGCCGGTTTTA 59.386 47.619 20.85 0.00 37.67 1.52
1727 10020 5.190677 CGGTTTTATAAGTTGAGGGACCAT 58.809 41.667 0.00 0.00 0.00 3.55
1766 10059 5.295152 ACGAAAACTACTGAAGGTGGTAAG 58.705 41.667 0.00 0.00 38.71 2.34
1767 10060 5.280654 ACGAAAACTACTGAAGGTGGTAA 57.719 39.130 0.00 0.00 38.71 2.85
1768 10061 4.262164 GGACGAAAACTACTGAAGGTGGTA 60.262 45.833 0.00 0.00 38.71 3.25
1769 10062 3.493873 GGACGAAAACTACTGAAGGTGGT 60.494 47.826 0.00 0.00 41.44 4.16
1770 10063 3.064931 GGACGAAAACTACTGAAGGTGG 58.935 50.000 0.00 0.00 0.00 4.61
1774 10078 2.655474 CGTCGGACGAAAACTACTGAAG 59.345 50.000 25.29 0.00 46.05 3.02
1777 10081 2.042104 ACGTCGGACGAAAACTACTG 57.958 50.000 34.40 4.26 46.05 2.74
1781 10085 1.876156 AGTCTACGTCGGACGAAAACT 59.124 47.619 34.40 26.64 46.05 2.66
1791 10095 2.240040 CTCAAAACCGAGTCTACGTCG 58.760 52.381 0.00 0.00 37.17 5.12
1797 10101 2.910688 TTCTGCTCAAAACCGAGTCT 57.089 45.000 0.00 0.00 35.33 3.24
1803 10107 5.754890 ACATGTCAATTTTCTGCTCAAAACC 59.245 36.000 0.00 0.00 0.00 3.27
1811 10115 4.100529 CGGATGACATGTCAATTTTCTGC 58.899 43.478 31.00 17.73 43.58 4.26
1814 10118 4.963276 TCCGGATGACATGTCAATTTTC 57.037 40.909 31.00 22.59 43.58 2.29
1874 10178 0.315886 ACGGACGAGCATGTACACAA 59.684 50.000 0.00 0.00 0.00 3.33
1898 10204 1.108776 CCAACATCCCATGAGCCAAG 58.891 55.000 0.00 0.00 0.00 3.61
1899 10205 0.971959 GCCAACATCCCATGAGCCAA 60.972 55.000 0.00 0.00 0.00 4.52
1919 10226 3.356639 GACGGTGAGCATGGCGAGA 62.357 63.158 0.00 0.00 0.00 4.04
1992 10299 3.369546 AGCCAACTTTGTTGTGTATGC 57.630 42.857 9.20 5.43 0.00 3.14
2251 10641 2.477845 TTGCTCATGTGCAAGCTAGA 57.522 45.000 26.66 8.10 46.43 2.43
2268 10658 3.482722 ACAAGCAAAGCTGATCGATTG 57.517 42.857 0.00 0.00 39.62 2.67
2362 10756 0.795735 CGCCTCGACACGAACGTATT 60.796 55.000 0.00 0.00 34.74 1.89
2460 10862 5.451520 GGTTTTTCTAGCTATAGCAGGACGA 60.452 44.000 26.07 11.47 45.16 4.20
2610 11012 0.400213 TTGACCTTTGACCTCGCCAT 59.600 50.000 0.00 0.00 0.00 4.40
2670 11073 0.538584 ACCGGATACTTTTCGTCCCC 59.461 55.000 9.46 0.00 0.00 4.81
2674 11077 5.759763 ACTTGTAAAACCGGATACTTTTCGT 59.240 36.000 9.46 0.00 0.00 3.85
2705 11108 7.918562 TCAACTTTAAAACCAGACAAACATAGC 59.081 33.333 0.00 0.00 0.00 2.97
2724 11128 5.897250 AGTGTAAAAATGGTCCCTCAACTTT 59.103 36.000 0.00 0.00 0.00 2.66
2747 11151 5.677319 TGGTCCCTCAACTTTACTGATAG 57.323 43.478 0.00 0.00 0.00 2.08
2783 11187 7.036220 TCTGAACGTTTGCAAAAATAAAAGGA 58.964 30.769 14.67 3.51 0.00 3.36
2790 11194 5.866633 TGAAGTTCTGAACGTTTGCAAAAAT 59.133 32.000 14.67 1.61 36.23 1.82
3043 12868 5.238214 CCAAGACAAGAGAGTTTCTCCAAAG 59.762 44.000 2.60 0.00 44.42 2.77
3171 13003 8.190784 CAGAAAGAAACACACTAAACATTCCTT 58.809 33.333 0.00 0.00 0.00 3.36
3174 13006 9.173939 CATCAGAAAGAAACACACTAAACATTC 57.826 33.333 0.00 0.00 0.00 2.67
3483 13487 5.502079 TCAACACTAACAAAAGAAGGGTGA 58.498 37.500 0.00 0.00 0.00 4.02
3587 13624 3.496130 GGGCATTTCGTCTCTGACATATG 59.504 47.826 0.00 0.00 32.09 1.78
3837 14563 4.338118 CCAGCTACAGGTTGAAACTTGAAA 59.662 41.667 11.74 0.06 38.15 2.69
3838 14564 3.882888 CCAGCTACAGGTTGAAACTTGAA 59.117 43.478 11.74 0.00 38.15 2.69
3842 14568 2.851195 CACCAGCTACAGGTTGAAACT 58.149 47.619 0.00 0.00 37.23 2.66
3843 14569 1.266989 GCACCAGCTACAGGTTGAAAC 59.733 52.381 0.00 0.00 37.23 2.78
3858 14591 3.517296 TGGAAATTAGAAGGTGCACCA 57.483 42.857 36.39 17.14 38.89 4.17
3914 14647 4.974645 TGGCTCTTAATATGGAACGGAT 57.025 40.909 0.00 0.00 0.00 4.18
4007 14930 5.523916 CAGCATAATAACACTAGGTCACCAC 59.476 44.000 0.00 0.00 0.00 4.16
4009 15558 4.511826 GCAGCATAATAACACTAGGTCACC 59.488 45.833 0.00 0.00 0.00 4.02
4742 24176 2.785713 ACCGGATTTTTGTTGAACCG 57.214 45.000 9.46 0.00 40.03 4.44
4743 24177 4.048241 TGAACCGGATTTTTGTTGAACC 57.952 40.909 9.46 0.00 0.00 3.62
4744 24178 7.701809 TTATTGAACCGGATTTTTGTTGAAC 57.298 32.000 9.46 0.00 0.00 3.18
4745 24179 8.718102 TTTTATTGAACCGGATTTTTGTTGAA 57.282 26.923 9.46 0.00 0.00 2.69
4746 24180 8.718102 TTTTTATTGAACCGGATTTTTGTTGA 57.282 26.923 9.46 0.00 0.00 3.18
4747 24181 9.592720 GATTTTTATTGAACCGGATTTTTGTTG 57.407 29.630 9.46 0.00 0.00 3.33
4748 24182 8.779303 GGATTTTTATTGAACCGGATTTTTGTT 58.221 29.630 9.46 0.00 0.00 2.83
4749 24183 8.154203 AGGATTTTTATTGAACCGGATTTTTGT 58.846 29.630 9.46 0.00 0.00 2.83
4750 24184 8.546597 AGGATTTTTATTGAACCGGATTTTTG 57.453 30.769 9.46 0.00 0.00 2.44
4751 24185 8.593679 AGAGGATTTTTATTGAACCGGATTTTT 58.406 29.630 9.46 0.00 0.00 1.94
4752 24186 8.134202 AGAGGATTTTTATTGAACCGGATTTT 57.866 30.769 9.46 0.00 0.00 1.82
4753 24187 7.718334 AGAGGATTTTTATTGAACCGGATTT 57.282 32.000 9.46 0.00 0.00 2.17
4754 24188 8.272173 TCTAGAGGATTTTTATTGAACCGGATT 58.728 33.333 9.46 0.00 0.00 3.01
4755 24189 7.802117 TCTAGAGGATTTTTATTGAACCGGAT 58.198 34.615 9.46 0.00 0.00 4.18
4756 24190 7.190335 TCTAGAGGATTTTTATTGAACCGGA 57.810 36.000 9.46 0.00 0.00 5.14
4757 24191 7.859325 TTCTAGAGGATTTTTATTGAACCGG 57.141 36.000 0.00 0.00 0.00 5.28
4842 24658 4.080975 CGGAGGGAGGGAGTACTATACTAG 60.081 54.167 0.00 0.00 39.59 2.57
4843 24659 3.843027 CGGAGGGAGGGAGTACTATACTA 59.157 52.174 0.00 0.00 39.59 1.82
4844 24660 2.643801 CGGAGGGAGGGAGTACTATACT 59.356 54.545 0.00 0.00 42.86 2.12
5083 26055 3.813724 ACGCTCTGGTTCTTTTTACTTCC 59.186 43.478 0.00 0.00 0.00 3.46
5096 26070 1.268899 GTGTACTGTGTACGCTCTGGT 59.731 52.381 8.10 4.43 0.00 4.00
5098 26072 2.991434 AGTGTACTGTGTACGCTCTG 57.009 50.000 15.50 0.95 33.47 3.35
5099 26073 5.668471 TCTATAGTGTACTGTGTACGCTCT 58.332 41.667 22.01 16.61 38.91 4.09
5100 26074 5.980698 TCTATAGTGTACTGTGTACGCTC 57.019 43.478 22.01 7.84 38.91 5.03
5101 26075 6.018098 GTGATCTATAGTGTACTGTGTACGCT 60.018 42.308 22.02 22.02 40.80 5.07
5103 26077 6.259387 TGGTGATCTATAGTGTACTGTGTACG 59.741 42.308 0.00 0.00 0.00 3.67
5104 26078 7.282675 ACTGGTGATCTATAGTGTACTGTGTAC 59.717 40.741 0.00 1.33 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.