Multiple sequence alignment - TraesCS1D01G248700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G248700 chr1D 100.000 3974 0 0 1 3974 341481923 341477950 0.000000e+00 7339.0
1 TraesCS1D01G248700 chr1D 83.621 348 37 15 3639 3973 341494712 341494372 3.860000e-80 309.0
2 TraesCS1D01G248700 chr1A 94.811 3257 128 18 741 3974 441115807 441112569 0.000000e+00 5040.0
3 TraesCS1D01G248700 chr1A 90.000 450 43 2 5 454 441116540 441116093 7.400000e-162 580.0
4 TraesCS1D01G248700 chr1A 89.137 313 33 1 1 313 441170582 441170271 4.820000e-104 388.0
5 TraesCS1D01G248700 chr1A 84.746 354 29 16 3639 3973 441184479 441184132 8.230000e-87 331.0
6 TraesCS1D01G248700 chr1A 86.986 292 22 9 423 705 441116093 441115809 8.290000e-82 315.0
7 TraesCS1D01G248700 chr1A 82.657 271 24 10 3643 3893 589867017 589866750 6.690000e-53 219.0
8 TraesCS1D01G248700 chr1A 85.024 207 13 5 694 899 441117357 441117168 1.130000e-45 195.0
9 TraesCS1D01G248700 chr1A 79.239 289 34 14 322 585 441117628 441117341 1.130000e-40 178.0
10 TraesCS1D01G248700 chr1A 93.636 110 6 1 322 431 441164182 441164074 3.180000e-36 163.0
11 TraesCS1D01G248700 chr1B 93.708 2829 118 23 825 3612 457325493 457322684 0.000000e+00 4183.0
12 TraesCS1D01G248700 chr1B 87.450 502 39 17 347 832 457326817 457326324 1.250000e-154 556.0
13 TraesCS1D01G248700 chr1B 93.272 327 17 4 3648 3973 457322698 457322376 9.990000e-131 477.0
14 TraesCS1D01G248700 chr1B 92.857 238 16 1 118 354 457329715 457329478 1.060000e-90 344.0
15 TraesCS1D01G248700 chr1B 82.254 355 35 14 3639 3971 457379413 457379065 8.410000e-72 281.0
16 TraesCS1D01G248700 chr1B 94.355 124 7 0 1 124 457347027 457346904 1.460000e-44 191.0
17 TraesCS1D01G248700 chr7D 82.958 1109 136 20 1620 2713 577959627 577960697 0.000000e+00 952.0
18 TraesCS1D01G248700 chr7D 83.742 898 109 13 1630 2508 578167128 578166249 0.000000e+00 815.0
19 TraesCS1D01G248700 chr7D 85.968 506 63 6 1773 2273 577880756 577881258 5.850000e-148 534.0
20 TraesCS1D01G248700 chr7A 82.165 1127 150 32 1194 2275 670163623 670164743 0.000000e+00 920.0
21 TraesCS1D01G248700 chr7A 86.627 501 65 2 1630 2130 670345906 670345408 1.610000e-153 553.0
22 TraesCS1D01G248700 chr7B 85.546 678 83 9 1609 2275 641365604 641366277 0.000000e+00 695.0
23 TraesCS1D01G248700 chr7B 83.117 693 82 13 2022 2713 641455337 641455995 2.040000e-167 599.0
24 TraesCS1D01G248700 chr7B 86.042 566 62 10 1632 2185 641335545 641336105 3.420000e-165 592.0
25 TraesCS1D01G248700 chr3D 85.799 507 55 9 1773 2274 55153328 55153822 4.550000e-144 521.0
26 TraesCS1D01G248700 chr3A 93.750 48 2 1 3639 3686 31809126 31809080 1.980000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G248700 chr1D 341477950 341481923 3973 True 7339.0 7339 100.00000 1 3974 1 chr1D.!!$R1 3973
1 TraesCS1D01G248700 chr1A 441112569 441117628 5059 True 1261.6 5040 87.21200 5 3974 5 chr1A.!!$R5 3969
2 TraesCS1D01G248700 chr1B 457322376 457329715 7339 True 1390.0 4183 91.82175 118 3973 4 chr1B.!!$R3 3855
3 TraesCS1D01G248700 chr7D 577959627 577960697 1070 False 952.0 952 82.95800 1620 2713 1 chr7D.!!$F2 1093
4 TraesCS1D01G248700 chr7D 578166249 578167128 879 True 815.0 815 83.74200 1630 2508 1 chr7D.!!$R1 878
5 TraesCS1D01G248700 chr7D 577880756 577881258 502 False 534.0 534 85.96800 1773 2273 1 chr7D.!!$F1 500
6 TraesCS1D01G248700 chr7A 670163623 670164743 1120 False 920.0 920 82.16500 1194 2275 1 chr7A.!!$F1 1081
7 TraesCS1D01G248700 chr7B 641365604 641366277 673 False 695.0 695 85.54600 1609 2275 1 chr7B.!!$F2 666
8 TraesCS1D01G248700 chr7B 641455337 641455995 658 False 599.0 599 83.11700 2022 2713 1 chr7B.!!$F3 691
9 TraesCS1D01G248700 chr7B 641335545 641336105 560 False 592.0 592 86.04200 1632 2185 1 chr7B.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 1261 0.179094 ACCAAACGCGAGACACTTCA 60.179 50.0 15.93 0.00 0.00 3.02 F
520 4306 0.333993 ACCCTAGTTGCGAGACCCTA 59.666 55.0 0.00 0.00 0.00 3.53 F
1332 5975 0.527817 CCGTCGCCTACAACTCCATC 60.528 60.0 0.00 0.00 0.00 3.51 F
2655 7377 0.597637 ACACTGTTCTGGCTCGAACG 60.598 55.0 12.98 10.75 44.76 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 6723 0.109086 ACGAACTCCATCTCAGCACG 60.109 55.000 0.0 0.0 0.00 5.34 R
2192 6902 3.659786 TCCTTGACACAAACACTATCGG 58.340 45.455 0.0 0.0 0.00 4.18 R
2791 7513 0.098376 GCTTCGCTTCCTTGATGCAG 59.902 55.000 0.0 0.0 35.87 4.41 R
3686 8448 0.681175 AACACAAAGCAAGATGGCCC 59.319 50.000 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 1115 6.667414 TGCATTTATTTGTTCCAGTTCCCTAT 59.333 34.615 0.00 0.00 0.00 2.57
40 1125 8.570068 TGTTCCAGTTCCCTATACAATTAAAC 57.430 34.615 0.00 0.00 0.00 2.01
42 1127 8.674607 GTTCCAGTTCCCTATACAATTAAACTG 58.325 37.037 0.00 0.00 40.94 3.16
81 1166 6.650120 TGGAATTAATTCTCCTCCACACTAC 58.350 40.000 23.85 6.70 37.00 2.73
93 1178 1.436600 CACACTACTGCTTGAGCTGG 58.563 55.000 13.34 5.24 43.15 4.85
95 1180 0.322975 CACTACTGCTTGAGCTGGGT 59.677 55.000 13.34 9.04 43.15 4.51
108 1193 2.282816 TGGGTTCCATGTTGCCCG 60.283 61.111 10.04 0.00 43.89 6.13
113 1198 1.032014 GTTCCATGTTGCCCGCATAT 58.968 50.000 0.00 0.00 0.00 1.78
114 1199 1.408702 GTTCCATGTTGCCCGCATATT 59.591 47.619 0.00 0.00 0.00 1.28
124 1209 2.367241 TGCCCGCATATTAGCTAACAGA 59.633 45.455 8.70 0.00 0.00 3.41
169 1254 0.387929 AGAGACAACCAAACGCGAGA 59.612 50.000 15.93 0.00 0.00 4.04
176 1261 0.179094 ACCAAACGCGAGACACTTCA 60.179 50.000 15.93 0.00 0.00 3.02
193 1278 4.458295 CACTTCAGCTTGATTTCATCCACT 59.542 41.667 0.00 0.00 0.00 4.00
303 1389 4.286707 TGATCTCGAGAACCAATCCCTTA 58.713 43.478 20.91 0.00 0.00 2.69
370 4125 1.489649 TCTAGACCCTAGACACTCCCG 59.510 57.143 0.00 0.00 0.00 5.14
477 4263 2.287188 CGGAAGAATGAATTCATGGCGG 60.287 50.000 21.39 11.12 39.23 6.13
520 4306 0.333993 ACCCTAGTTGCGAGACCCTA 59.666 55.000 0.00 0.00 0.00 3.53
571 4365 5.116882 GCACGTAGGGTCTTTCTATCAAAT 58.883 41.667 0.00 0.00 0.00 2.32
577 4371 7.224167 CGTAGGGTCTTTCTATCAAATACAACC 59.776 40.741 0.00 0.00 0.00 3.77
595 4389 4.462483 ACAACCATGAAAACTATCCGCAAT 59.538 37.500 0.00 0.00 0.00 3.56
658 4453 8.921205 TCTGATAGGTATGTAGGGTTTTTCTAC 58.079 37.037 0.00 0.00 38.00 2.59
661 4456 4.162888 AGGTATGTAGGGTTTTTCTACCGG 59.837 45.833 0.00 0.00 39.18 5.28
680 4475 5.801380 ACCGGACACAACTATGAAAACTAT 58.199 37.500 9.46 0.00 0.00 2.12
696 4492 7.871853 TGAAAACTATCCGGAAGAAAAAGAAG 58.128 34.615 9.01 0.00 0.00 2.85
713 4509 6.566197 AAAGAAGACAACTATGAAAGCTGG 57.434 37.500 0.00 0.00 0.00 4.85
720 4516 7.341805 AGACAACTATGAAAGCTGGATGTATT 58.658 34.615 0.00 0.00 0.00 1.89
764 4562 9.481340 AATTCACTCTTTATCCAAAAAGAAAGC 57.519 29.630 1.20 0.00 43.13 3.51
820 4618 4.483476 TTCAAAAGAAAGCGGCTAGAAC 57.517 40.909 1.35 0.00 0.00 3.01
874 5510 4.885325 CCACTTTGGTTTACTGGTTGTAGT 59.115 41.667 0.00 0.00 31.35 2.73
875 5511 6.056884 CCACTTTGGTTTACTGGTTGTAGTA 58.943 40.000 0.00 0.00 31.35 1.82
1013 5649 1.450312 GCCGAATGGTGAGGGACAG 60.450 63.158 0.00 0.00 37.67 3.51
1332 5975 0.527817 CCGTCGCCTACAACTCCATC 60.528 60.000 0.00 0.00 0.00 3.51
1603 6272 5.569413 GCGTCTTTTGGAATATGAACGAAT 58.431 37.500 0.00 0.00 0.00 3.34
1683 6358 1.292061 CGGTGTTTGAGTGTTTCCGA 58.708 50.000 0.00 0.00 38.96 4.55
1755 6436 2.201732 CTTACCGCGTGCACAGATATT 58.798 47.619 18.64 0.00 0.00 1.28
1902 6591 2.683362 CAGGCTTTTCGAGGGATTAACC 59.317 50.000 0.00 0.00 38.08 2.85
1968 6657 1.637553 AGGAGTGGTTTGATGGAGCAT 59.362 47.619 0.00 0.00 0.00 3.79
2034 6723 3.427161 ACTGAGTTCACTTTTGCAAGC 57.573 42.857 0.00 0.00 32.57 4.01
2192 6902 1.742268 GAAGCATGCCAGGAAACTCTC 59.258 52.381 15.66 0.00 40.21 3.20
2307 7020 2.042831 GTGGATGCTGGACTGTGGC 61.043 63.158 0.00 0.00 0.00 5.01
2472 7185 0.960364 ACATGTTAAGCCGTGCAGGG 60.960 55.000 21.22 21.22 41.48 4.45
2568 7289 2.372264 GAGGCTTGCATGATTCAAGGA 58.628 47.619 6.93 0.00 40.79 3.36
2621 7343 6.240894 AGAATATGTTGAAACTGAAGCCTCA 58.759 36.000 0.00 0.00 0.00 3.86
2655 7377 0.597637 ACACTGTTCTGGCTCGAACG 60.598 55.000 12.98 10.75 44.76 3.95
2791 7513 8.511321 TCCATGTGTTTACATCTGAACAAATAC 58.489 33.333 0.00 0.00 45.53 1.89
2829 7551 5.275788 CGAAGCTACGTATGCAGTTTTAGAC 60.276 44.000 15.98 0.00 0.00 2.59
2928 7650 5.721480 TCATACACAAGATCCCAAGAAGAGA 59.279 40.000 0.00 0.00 0.00 3.10
3025 7748 0.729116 CCGTCTCACAATGGTCATGC 59.271 55.000 0.00 0.00 0.00 4.06
3102 7825 3.755378 AGCACTATGAGCACCAAGAAAAG 59.245 43.478 0.00 0.00 0.00 2.27
3103 7826 3.753272 GCACTATGAGCACCAAGAAAAGA 59.247 43.478 0.00 0.00 0.00 2.52
3135 7858 3.204526 GAGAGGGTGCAGAAATCTGATG 58.795 50.000 14.43 0.00 46.59 3.07
3185 7908 7.744715 GTGATCAGGTTTTACTTCGTGTTTATG 59.255 37.037 0.00 0.00 0.00 1.90
3190 7913 8.500773 CAGGTTTTACTTCGTGTTTATGTATGT 58.499 33.333 0.00 0.00 0.00 2.29
3238 7961 9.982291 TTACAGATTGATTAATTTACTTGACGC 57.018 29.630 0.00 0.00 0.00 5.19
3311 8034 1.964373 GTACGCAGGTTGGTGGTGG 60.964 63.158 0.00 0.00 0.00 4.61
3325 8048 3.181458 TGGTGGTGGTCTCTTGTTAGAAC 60.181 47.826 0.00 0.00 33.55 3.01
3326 8049 3.400255 GTGGTGGTCTCTTGTTAGAACC 58.600 50.000 0.00 0.00 31.80 3.62
3405 8135 2.434884 ACTTGCATGCCCTCGTCG 60.435 61.111 16.68 0.00 0.00 5.12
3437 8174 2.743752 CCAGAAGCGCATGTGGACG 61.744 63.158 23.04 0.00 35.83 4.79
3439 8176 4.166011 GAAGCGCATGTGGACGGC 62.166 66.667 11.47 0.00 0.00 5.68
3514 8276 1.211457 AGCATTTGGAGAGCTACCTGG 59.789 52.381 10.20 0.00 36.73 4.45
3519 8281 0.618680 TGGAGAGCTACCTGGCATGT 60.619 55.000 10.20 0.10 34.17 3.21
3565 8327 5.070685 AGAAAGGACATACCAAGTTTCCAC 58.929 41.667 0.00 0.00 42.04 4.02
3603 8365 1.369625 CAACGTATCTTGGCAGGTCC 58.630 55.000 0.00 0.00 0.00 4.46
3650 8412 6.163135 AGGTTCTAATGTCAGGTATACAGC 57.837 41.667 5.01 0.00 0.00 4.40
3712 8474 1.824230 TCTTGCTTTGTGTTGGCACTT 59.176 42.857 0.00 0.00 45.44 3.16
3715 8477 1.135141 TGCTTTGTGTTGGCACTTGTC 60.135 47.619 0.00 0.00 45.44 3.18
3804 8567 2.422231 GGTGTGGTGTTGCTGCCAA 61.422 57.895 0.00 0.00 36.41 4.52
3810 8573 1.693062 TGGTGTTGCTGCCAAATTCAT 59.307 42.857 0.00 0.00 31.68 2.57
3860 8623 7.031372 CACAGCAACTGCAATTGTATTATCTT 58.969 34.615 9.94 0.00 45.16 2.40
3958 8721 1.386533 GTGGGAGGAATCAGTGCATG 58.613 55.000 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.492344 GGAACTGGAACAAATAAATGCATTAGG 59.508 37.037 13.39 3.48 38.70 2.69
2 3 7.180051 AGGGAACTGGAACAAATAAATGCATTA 59.820 33.333 13.39 1.72 41.13 1.90
5 6 4.837860 AGGGAACTGGAACAAATAAATGCA 59.162 37.500 0.00 0.00 41.13 3.96
6 7 5.405935 AGGGAACTGGAACAAATAAATGC 57.594 39.130 0.00 0.00 41.13 3.56
7 8 9.184523 TGTATAGGGAACTGGAACAAATAAATG 57.815 33.333 0.00 0.00 43.88 2.32
8 9 9.762381 TTGTATAGGGAACTGGAACAAATAAAT 57.238 29.630 0.00 0.00 43.88 1.40
12 1097 9.762381 TTAATTGTATAGGGAACTGGAACAAAT 57.238 29.630 0.00 0.00 43.88 2.32
30 1115 9.900710 ACGTATTTGCAATTCAGTTTAATTGTA 57.099 25.926 0.00 4.13 44.90 2.41
37 1122 5.837437 TCCAACGTATTTGCAATTCAGTTT 58.163 33.333 0.00 0.00 33.34 2.66
40 1125 6.949578 AATTCCAACGTATTTGCAATTCAG 57.050 33.333 0.00 0.00 30.90 3.02
42 1127 9.900264 GAATTAATTCCAACGTATTTGCAATTC 57.100 29.630 16.05 0.00 35.44 2.17
47 1132 7.480810 AGGAGAATTAATTCCAACGTATTTGC 58.519 34.615 21.86 7.85 37.51 3.68
54 1139 4.941263 TGTGGAGGAGAATTAATTCCAACG 59.059 41.667 21.86 0.00 39.47 4.10
66 1151 2.300152 CAAGCAGTAGTGTGGAGGAGAA 59.700 50.000 0.00 0.00 0.00 2.87
67 1152 1.895798 CAAGCAGTAGTGTGGAGGAGA 59.104 52.381 0.00 0.00 0.00 3.71
81 1166 0.323178 ATGGAACCCAGCTCAAGCAG 60.323 55.000 4.59 0.00 45.16 4.24
93 1178 1.034838 TATGCGGGCAACATGGAACC 61.035 55.000 0.00 0.00 39.74 3.62
95 1180 1.774110 AATATGCGGGCAACATGGAA 58.226 45.000 0.00 0.00 39.74 3.53
124 1209 2.234908 AGGAAGTTTCAGTCATAGCGCT 59.765 45.455 17.26 17.26 0.00 5.92
160 1245 0.249489 AGCTGAAGTGTCTCGCGTTT 60.249 50.000 5.77 0.00 0.00 3.60
193 1278 3.116939 TGGTTTGGGAAGAGGAATTGGAA 60.117 43.478 0.00 0.00 0.00 3.53
303 1389 5.804944 TTTGACAATGGTGGAATCACATT 57.195 34.783 0.00 0.00 45.32 2.71
370 4125 1.666872 CCGACCTTGGTTGGACGAC 60.667 63.158 19.00 0.00 45.25 4.34
477 4263 1.664965 AGTCTTCAAGTGGCGACGC 60.665 57.895 12.43 12.43 42.66 5.19
485 4271 3.953542 AGGGTTTTCCAGTCTTCAAGT 57.046 42.857 0.00 0.00 42.91 3.16
534 4321 1.664649 CGTGCCAGCGTGAAGAGAA 60.665 57.895 0.00 0.00 0.00 2.87
571 4365 4.580868 TGCGGATAGTTTTCATGGTTGTA 58.419 39.130 0.00 0.00 0.00 2.41
633 4427 8.148999 GGTAGAAAAACCCTACATACCTATCAG 58.851 40.741 0.00 0.00 38.51 2.90
658 4453 5.293569 GGATAGTTTTCATAGTTGTGTCCGG 59.706 44.000 0.00 0.00 0.00 5.14
661 4456 6.103997 TCCGGATAGTTTTCATAGTTGTGTC 58.896 40.000 0.00 0.00 0.00 3.67
680 4475 4.777463 AGTTGTCTTCTTTTTCTTCCGGA 58.223 39.130 0.00 0.00 0.00 5.14
696 4492 7.559590 AATACATCCAGCTTTCATAGTTGTC 57.440 36.000 0.00 0.00 33.59 3.18
720 4516 9.712305 GAGTGAATTTATTAGCTAGCAATAGGA 57.288 33.333 18.83 11.00 0.00 2.94
739 4535 8.641541 TGCTTTCTTTTTGGATAAAGAGTGAAT 58.358 29.630 0.00 0.00 43.05 2.57
759 4555 5.722021 TTAGAAAGACCCCATTTGCTTTC 57.278 39.130 0.00 0.00 43.91 2.62
764 4562 9.807649 CAAATTAGATTAGAAAGACCCCATTTG 57.192 33.333 0.00 0.00 0.00 2.32
874 5510 9.973450 GAGAAGTTGATCAGAGCTTTATGTATA 57.027 33.333 0.00 0.00 0.00 1.47
875 5511 7.930865 GGAGAAGTTGATCAGAGCTTTATGTAT 59.069 37.037 0.00 0.00 0.00 2.29
1229 5868 2.892425 CGGCGAGGAGGATGTTGC 60.892 66.667 0.00 0.00 0.00 4.17
1603 6272 5.009631 AGAATTCATCGAAACCATGTCCAA 58.990 37.500 8.44 0.00 0.00 3.53
1683 6358 4.322057 AAACCCATGGCTTCTAGTCAAT 57.678 40.909 6.09 0.00 31.33 2.57
1755 6436 2.026262 GTCACCCTTAGCCAAATCCTCA 60.026 50.000 0.00 0.00 0.00 3.86
1902 6591 6.381801 GTTACATGTTTCTGAGTCCCATTTG 58.618 40.000 2.30 0.00 0.00 2.32
1968 6657 1.073722 CACAAAGAGGCCCAGAGCA 59.926 57.895 0.00 0.00 46.50 4.26
2034 6723 0.109086 ACGAACTCCATCTCAGCACG 60.109 55.000 0.00 0.00 0.00 5.34
2192 6902 3.659786 TCCTTGACACAAACACTATCGG 58.340 45.455 0.00 0.00 0.00 4.18
2307 7020 5.837437 AGAGTAATTCTATCTGGCTTGACG 58.163 41.667 0.00 0.00 33.23 4.35
2472 7185 5.729510 AGATCTTCTGCCTCTCTAAACAAC 58.270 41.667 0.00 0.00 0.00 3.32
2568 7289 0.254178 ACTCTGCCATGGCGAAATCT 59.746 50.000 30.87 8.84 45.51 2.40
2621 7343 1.170919 AGTGTACGGCAGTGACGACT 61.171 55.000 28.44 15.88 35.20 4.18
2634 7356 2.433868 TTCGAGCCAGAACAGTGTAC 57.566 50.000 0.00 0.00 0.00 2.90
2655 7377 3.627577 CCCACTTACATCTTGCACCATAC 59.372 47.826 0.00 0.00 0.00 2.39
2791 7513 0.098376 GCTTCGCTTCCTTGATGCAG 59.902 55.000 0.00 0.00 35.87 4.41
2829 7551 4.139786 CCATCATGTCCCAGAACAATAGG 58.860 47.826 0.00 0.00 31.81 2.57
2928 7650 3.055602 GCTGAAGGCAATCAAATCCCTTT 60.056 43.478 0.00 0.00 37.78 3.11
3025 7748 3.107642 ACTGTCAAGTCAAGGTAACCG 57.892 47.619 0.00 0.00 28.19 4.44
3135 7858 4.458989 TGTTCTTTGCCAACATACTGGATC 59.541 41.667 0.00 0.00 38.96 3.36
3185 7908 8.744008 ACAAGATACTATACGCATCAACATAC 57.256 34.615 0.00 0.00 0.00 2.39
3190 7913 8.626526 TGTAAGACAAGATACTATACGCATCAA 58.373 33.333 0.00 0.00 0.00 2.57
3272 7995 7.624344 GCGTACAAGATCTGTAGCAAAAAGATT 60.624 37.037 0.00 0.00 41.28 2.40
3311 8034 6.690194 TCCTATACGGTTCTAACAAGAGAC 57.310 41.667 0.00 0.00 0.00 3.36
3325 8048 2.742053 CCGATGGCAAAATCCTATACGG 59.258 50.000 0.00 0.00 0.00 4.02
3326 8049 2.742053 CCCGATGGCAAAATCCTATACG 59.258 50.000 0.00 0.00 0.00 3.06
3387 8117 2.743752 CGACGAGGGCATGCAAGTG 61.744 63.158 21.36 8.83 0.00 3.16
3437 8174 1.805945 CTGCTCGTAACTGGACGCC 60.806 63.158 0.13 0.00 42.62 5.68
3439 8176 1.153823 CCCTGCTCGTAACTGGACG 60.154 63.158 0.00 0.00 44.29 4.79
3469 8206 2.682846 CCCCATAGGTGCTTGGCA 59.317 61.111 0.00 0.00 35.60 4.92
3514 8276 3.501828 TGTGATACTGTCAAACCACATGC 59.498 43.478 0.00 0.00 38.90 4.06
3519 8281 6.770303 TCTTTGATTGTGATACTGTCAAACCA 59.230 34.615 0.00 0.00 38.90 3.67
3686 8448 0.681175 AACACAAAGCAAGATGGCCC 59.319 50.000 0.00 0.00 0.00 5.80
3712 8474 5.007034 GCTAGCTATCTCTCCATGTAGACA 58.993 45.833 7.70 0.00 0.00 3.41
3715 8477 5.622007 GCTTGCTAGCTATCTCTCCATGTAG 60.622 48.000 17.23 0.00 44.27 2.74
3754 8516 3.319137 AGCGATGAACACTAAAGAGCA 57.681 42.857 0.00 0.00 0.00 4.26
3757 8519 3.664107 AGCAAGCGATGAACACTAAAGA 58.336 40.909 0.00 0.00 0.00 2.52
3804 8567 6.017109 GGGTACTTACGCATCATCAATGAATT 60.017 38.462 0.00 0.00 40.69 2.17
3810 8573 3.897141 TGGGTACTTACGCATCATCAA 57.103 42.857 2.20 0.00 43.04 2.57
3860 8623 6.832520 AACCTGTGCATGTTTGTGATATAA 57.167 33.333 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.