Multiple sequence alignment - TraesCS1D01G248300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G248300 chr1D 100.000 4445 0 0 1 4445 341241315 341236871 0.000000e+00 8209.0
1 TraesCS1D01G248300 chr1A 92.241 3209 218 12 668 3856 440889447 440886250 0.000000e+00 4518.0
2 TraesCS1D01G248300 chr1A 91.697 277 14 5 3935 4206 440886246 440885974 4.200000e-100 375.0
3 TraesCS1D01G248300 chr1A 87.671 219 27 0 2050 2268 440881623 440881405 5.710000e-64 255.0
4 TraesCS1D01G248300 chr1A 98.901 91 1 0 4264 4354 440885435 440885345 3.560000e-36 163.0
5 TraesCS1D01G248300 chr1A 95.789 95 4 0 4351 4445 440885277 440885183 2.140000e-33 154.0
6 TraesCS1D01G248300 chr1A 97.619 42 0 1 1516 1557 440888486 440888446 2.220000e-08 71.3
7 TraesCS1D01G248300 chr1B 94.988 2075 104 0 1606 3680 456976637 456974563 0.000000e+00 3256.0
8 TraesCS1D01G248300 chr1B 92.600 500 31 4 3684 4181 456971731 456971236 0.000000e+00 713.0
9 TraesCS1D01G248300 chr1B 89.720 321 33 0 1026 1346 456977020 456976700 1.150000e-110 411.0
10 TraesCS1D01G248300 chr1B 85.981 321 35 6 661 976 456977340 456977025 7.120000e-88 335.0
11 TraesCS1D01G248300 chr1B 88.372 258 24 3 4190 4445 456971182 456970929 5.590000e-79 305.0
12 TraesCS1D01G248300 chr1B 86.782 174 12 9 150 320 456977780 456977615 2.730000e-42 183.0
13 TraesCS1D01G248300 chr1B 91.667 60 5 0 371 430 658734710 658734769 2.850000e-12 84.2
14 TraesCS1D01G248300 chrUn 94.444 54 3 0 377 430 349649282 349649229 2.850000e-12 84.2
15 TraesCS1D01G248300 chr6A 87.273 55 6 1 373 427 80699843 80699896 1.330000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G248300 chr1D 341236871 341241315 4444 True 8209.000000 8209 100.000000 1 4445 1 chr1D.!!$R1 4444
1 TraesCS1D01G248300 chr1A 440881405 440889447 8042 True 922.716667 4518 93.986333 668 4445 6 chr1A.!!$R1 3777
2 TraesCS1D01G248300 chr1B 456970929 456977780 6851 True 867.166667 3256 89.740500 150 4445 6 chr1B.!!$R1 4295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.107643 GGACAGGAGCTTGGGATAGC 59.892 60.0 0.0 0.0 41.53 2.97 F
1192 1297 0.037447 TCATCGGGTGAACATTGCCA 59.963 50.0 0.0 0.0 32.78 4.92 F
2174 2293 0.038526 CTTGGAGCAGCTTTGGCAAG 60.039 55.0 0.0 0.0 41.70 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1962 0.329261 CCCAGCTCCATTTCCTGTGA 59.671 55.0 0.00 0.0 0.00 3.58 R
3120 3239 0.028505 CCCTCTGCGATGCGATTTTG 59.971 55.0 0.00 0.0 0.00 2.44 R
3776 6724 0.625849 GTCAACCCTGGGTGATGGAT 59.374 55.0 21.38 0.0 35.34 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.592381 GACGATTCATGGATTTCACCG 57.408 47.619 0.00 0.00 0.00 4.94
21 22 3.194861 GACGATTCATGGATTTCACCGA 58.805 45.455 0.00 0.00 0.00 4.69
22 23 2.936498 ACGATTCATGGATTTCACCGAC 59.064 45.455 0.00 0.00 0.00 4.79
23 24 3.198068 CGATTCATGGATTTCACCGACT 58.802 45.455 0.00 0.00 0.00 4.18
24 25 3.001634 CGATTCATGGATTTCACCGACTG 59.998 47.826 0.00 0.00 0.00 3.51
25 26 1.737838 TCATGGATTTCACCGACTGC 58.262 50.000 0.00 0.00 0.00 4.40
26 27 1.003003 TCATGGATTTCACCGACTGCA 59.997 47.619 0.00 0.00 0.00 4.41
27 28 1.131126 CATGGATTTCACCGACTGCAC 59.869 52.381 0.00 0.00 0.00 4.57
28 29 0.396435 TGGATTTCACCGACTGCACT 59.604 50.000 0.00 0.00 0.00 4.40
29 30 0.798776 GGATTTCACCGACTGCACTG 59.201 55.000 0.00 0.00 0.00 3.66
30 31 0.166814 GATTTCACCGACTGCACTGC 59.833 55.000 0.00 0.00 0.00 4.40
31 32 0.534877 ATTTCACCGACTGCACTGCA 60.535 50.000 3.11 3.11 36.92 4.41
32 33 1.436195 TTTCACCGACTGCACTGCAC 61.436 55.000 0.00 0.00 33.79 4.57
33 34 2.585791 TTCACCGACTGCACTGCACA 62.586 55.000 0.00 0.00 33.79 4.57
34 35 2.588877 ACCGACTGCACTGCACAC 60.589 61.111 0.00 0.00 33.79 3.82
35 36 2.588596 CCGACTGCACTGCACACA 60.589 61.111 0.00 0.00 33.79 3.72
36 37 1.962822 CCGACTGCACTGCACACAT 60.963 57.895 0.00 0.00 33.79 3.21
37 38 0.670239 CCGACTGCACTGCACACATA 60.670 55.000 0.00 0.00 33.79 2.29
38 39 0.717784 CGACTGCACTGCACACATAG 59.282 55.000 0.00 0.00 33.79 2.23
39 40 1.800805 GACTGCACTGCACACATAGT 58.199 50.000 0.00 0.00 33.79 2.12
40 41 2.146342 GACTGCACTGCACACATAGTT 58.854 47.619 0.00 0.00 33.79 2.24
41 42 2.146342 ACTGCACTGCACACATAGTTC 58.854 47.619 0.00 0.00 33.79 3.01
42 43 2.224378 ACTGCACTGCACACATAGTTCT 60.224 45.455 0.00 0.00 33.79 3.01
43 44 2.810274 CTGCACTGCACACATAGTTCTT 59.190 45.455 0.00 0.00 33.79 2.52
44 45 2.549329 TGCACTGCACACATAGTTCTTG 59.451 45.455 0.00 0.00 31.71 3.02
45 46 2.807967 GCACTGCACACATAGTTCTTGA 59.192 45.455 0.00 0.00 0.00 3.02
46 47 3.438087 GCACTGCACACATAGTTCTTGAT 59.562 43.478 0.00 0.00 0.00 2.57
47 48 4.083110 GCACTGCACACATAGTTCTTGATT 60.083 41.667 0.00 0.00 0.00 2.57
48 49 5.625251 CACTGCACACATAGTTCTTGATTC 58.375 41.667 0.00 0.00 0.00 2.52
49 50 4.697352 ACTGCACACATAGTTCTTGATTCC 59.303 41.667 0.00 0.00 0.00 3.01
50 51 4.910195 TGCACACATAGTTCTTGATTCCT 58.090 39.130 0.00 0.00 0.00 3.36
51 52 5.316167 TGCACACATAGTTCTTGATTCCTT 58.684 37.500 0.00 0.00 0.00 3.36
52 53 6.472016 TGCACACATAGTTCTTGATTCCTTA 58.528 36.000 0.00 0.00 0.00 2.69
53 54 6.939730 TGCACACATAGTTCTTGATTCCTTAA 59.060 34.615 0.00 0.00 0.00 1.85
54 55 7.094805 TGCACACATAGTTCTTGATTCCTTAAC 60.095 37.037 0.00 0.00 0.00 2.01
55 56 7.119846 GCACACATAGTTCTTGATTCCTTAACT 59.880 37.037 0.00 0.00 34.86 2.24
56 57 8.446273 CACACATAGTTCTTGATTCCTTAACTG 58.554 37.037 0.00 0.00 32.85 3.16
57 58 7.607991 ACACATAGTTCTTGATTCCTTAACTGG 59.392 37.037 0.00 0.00 32.85 4.00
58 59 6.599638 ACATAGTTCTTGATTCCTTAACTGGC 59.400 38.462 0.00 0.00 32.85 4.85
59 60 4.985538 AGTTCTTGATTCCTTAACTGGCA 58.014 39.130 0.00 0.00 0.00 4.92
60 61 5.385198 AGTTCTTGATTCCTTAACTGGCAA 58.615 37.500 0.00 0.00 0.00 4.52
61 62 6.012745 AGTTCTTGATTCCTTAACTGGCAAT 58.987 36.000 0.00 0.00 0.00 3.56
62 63 6.494835 AGTTCTTGATTCCTTAACTGGCAATT 59.505 34.615 0.00 0.00 0.00 2.32
63 64 6.916360 TCTTGATTCCTTAACTGGCAATTT 57.084 33.333 0.00 0.00 0.00 1.82
64 65 8.303876 GTTCTTGATTCCTTAACTGGCAATTTA 58.696 33.333 0.00 0.00 0.00 1.40
65 66 8.415950 TCTTGATTCCTTAACTGGCAATTTAA 57.584 30.769 0.00 0.00 0.00 1.52
66 67 8.865090 TCTTGATTCCTTAACTGGCAATTTAAA 58.135 29.630 0.00 0.00 0.00 1.52
67 68 9.487790 CTTGATTCCTTAACTGGCAATTTAAAA 57.512 29.630 0.00 0.00 0.00 1.52
68 69 8.825667 TGATTCCTTAACTGGCAATTTAAAAC 57.174 30.769 0.00 0.00 0.00 2.43
69 70 7.596995 TGATTCCTTAACTGGCAATTTAAAACG 59.403 33.333 0.00 0.00 0.00 3.60
70 71 5.224135 TCCTTAACTGGCAATTTAAAACGC 58.776 37.500 0.00 0.00 0.00 4.84
71 72 5.010213 TCCTTAACTGGCAATTTAAAACGCT 59.990 36.000 10.85 0.00 0.00 5.07
72 73 5.118510 CCTTAACTGGCAATTTAAAACGCTG 59.881 40.000 10.85 7.68 0.00 5.18
73 74 2.403259 ACTGGCAATTTAAAACGCTGC 58.597 42.857 10.85 8.58 0.00 5.25
74 75 2.035832 ACTGGCAATTTAAAACGCTGCT 59.964 40.909 10.85 0.00 33.49 4.24
75 76 3.254657 ACTGGCAATTTAAAACGCTGCTA 59.745 39.130 10.85 6.53 33.49 3.49
76 77 3.832276 TGGCAATTTAAAACGCTGCTAG 58.168 40.909 10.85 0.00 33.49 3.42
77 78 3.179048 GGCAATTTAAAACGCTGCTAGG 58.821 45.455 10.85 0.00 33.49 3.02
78 79 3.119637 GGCAATTTAAAACGCTGCTAGGA 60.120 43.478 10.85 0.00 33.49 2.94
79 80 3.851969 GCAATTTAAAACGCTGCTAGGAC 59.148 43.478 0.00 0.00 0.00 3.85
80 81 4.614993 GCAATTTAAAACGCTGCTAGGACA 60.615 41.667 0.00 0.00 0.00 4.02
81 82 4.946784 ATTTAAAACGCTGCTAGGACAG 57.053 40.909 0.00 0.00 40.80 3.51
82 83 2.380084 TAAAACGCTGCTAGGACAGG 57.620 50.000 0.00 0.00 38.16 4.00
83 84 0.685097 AAAACGCTGCTAGGACAGGA 59.315 50.000 0.00 0.00 38.16 3.86
84 85 0.247736 AAACGCTGCTAGGACAGGAG 59.752 55.000 0.00 0.00 45.19 3.69
88 89 3.756739 CTGCTAGGACAGGAGCTTG 57.243 57.895 0.00 0.00 39.54 4.01
89 90 0.177604 CTGCTAGGACAGGAGCTTGG 59.822 60.000 0.00 0.00 39.54 3.61
90 91 1.267574 TGCTAGGACAGGAGCTTGGG 61.268 60.000 0.00 0.00 39.54 4.12
91 92 0.978146 GCTAGGACAGGAGCTTGGGA 60.978 60.000 0.00 0.00 35.73 4.37
92 93 1.799933 CTAGGACAGGAGCTTGGGAT 58.200 55.000 0.00 0.00 0.00 3.85
93 94 2.964209 CTAGGACAGGAGCTTGGGATA 58.036 52.381 0.00 0.00 0.00 2.59
94 95 1.799933 AGGACAGGAGCTTGGGATAG 58.200 55.000 0.00 0.00 0.00 2.08
95 96 0.107643 GGACAGGAGCTTGGGATAGC 59.892 60.000 0.00 0.00 41.53 2.97
101 102 2.592861 GCTTGGGATAGCTGGCCG 60.593 66.667 0.00 0.00 38.15 6.13
102 103 2.592861 CTTGGGATAGCTGGCCGC 60.593 66.667 11.02 11.02 39.57 6.53
103 104 3.405093 CTTGGGATAGCTGGCCGCA 62.405 63.158 19.30 7.89 42.61 5.69
104 105 3.405093 TTGGGATAGCTGGCCGCAG 62.405 63.158 19.30 4.07 42.61 5.18
105 106 3.866582 GGGATAGCTGGCCGCAGT 61.867 66.667 19.30 8.85 42.61 4.40
106 107 2.280457 GGATAGCTGGCCGCAGTC 60.280 66.667 19.30 15.42 42.61 3.51
107 108 2.801631 GGATAGCTGGCCGCAGTCT 61.802 63.158 19.30 7.16 42.61 3.24
108 109 1.300542 GATAGCTGGCCGCAGTCTC 60.301 63.158 19.30 8.10 42.61 3.36
109 110 3.144120 ATAGCTGGCCGCAGTCTCG 62.144 63.158 19.30 0.00 42.61 4.04
114 115 4.443266 GGCCGCAGTCTCGCTCTT 62.443 66.667 0.00 0.00 0.00 2.85
115 116 2.883253 GCCGCAGTCTCGCTCTTC 60.883 66.667 0.00 0.00 0.00 2.87
116 117 2.881389 CCGCAGTCTCGCTCTTCT 59.119 61.111 0.00 0.00 0.00 2.85
117 118 1.214062 CCGCAGTCTCGCTCTTCTT 59.786 57.895 0.00 0.00 0.00 2.52
118 119 1.075425 CCGCAGTCTCGCTCTTCTTG 61.075 60.000 0.00 0.00 0.00 3.02
119 120 0.387878 CGCAGTCTCGCTCTTCTTGT 60.388 55.000 0.00 0.00 0.00 3.16
120 121 1.789506 GCAGTCTCGCTCTTCTTGTT 58.210 50.000 0.00 0.00 0.00 2.83
121 122 2.139118 GCAGTCTCGCTCTTCTTGTTT 58.861 47.619 0.00 0.00 0.00 2.83
122 123 3.318017 GCAGTCTCGCTCTTCTTGTTTA 58.682 45.455 0.00 0.00 0.00 2.01
123 124 3.741344 GCAGTCTCGCTCTTCTTGTTTAA 59.259 43.478 0.00 0.00 0.00 1.52
124 125 4.390297 GCAGTCTCGCTCTTCTTGTTTAAT 59.610 41.667 0.00 0.00 0.00 1.40
125 126 5.106908 GCAGTCTCGCTCTTCTTGTTTAATT 60.107 40.000 0.00 0.00 0.00 1.40
126 127 6.090898 GCAGTCTCGCTCTTCTTGTTTAATTA 59.909 38.462 0.00 0.00 0.00 1.40
127 128 7.201565 GCAGTCTCGCTCTTCTTGTTTAATTAT 60.202 37.037 0.00 0.00 0.00 1.28
128 129 8.113062 CAGTCTCGCTCTTCTTGTTTAATTATG 58.887 37.037 0.00 0.00 0.00 1.90
129 130 8.035394 AGTCTCGCTCTTCTTGTTTAATTATGA 58.965 33.333 0.00 0.00 0.00 2.15
130 131 8.821894 GTCTCGCTCTTCTTGTTTAATTATGAT 58.178 33.333 0.00 0.00 0.00 2.45
131 132 8.820933 TCTCGCTCTTCTTGTTTAATTATGATG 58.179 33.333 0.00 0.00 0.00 3.07
132 133 8.492673 TCGCTCTTCTTGTTTAATTATGATGT 57.507 30.769 0.00 0.00 0.00 3.06
133 134 8.946085 TCGCTCTTCTTGTTTAATTATGATGTT 58.054 29.630 0.00 0.00 0.00 2.71
134 135 9.559958 CGCTCTTCTTGTTTAATTATGATGTTT 57.440 29.630 0.00 0.00 0.00 2.83
143 144 9.249053 TGTTTAATTATGATGTTTCCTAAGCCA 57.751 29.630 0.00 0.00 0.00 4.75
146 147 6.906157 ATTATGATGTTTCCTAAGCCATGG 57.094 37.500 7.63 7.63 0.00 3.66
147 148 2.378038 TGATGTTTCCTAAGCCATGGC 58.622 47.619 30.12 30.12 42.33 4.40
158 159 3.250220 GCCATGGCGTATTTTTCGG 57.750 52.632 23.48 0.00 0.00 4.30
159 160 0.248866 GCCATGGCGTATTTTTCGGG 60.249 55.000 23.48 0.00 0.00 5.14
160 161 0.383949 CCATGGCGTATTTTTCGGGG 59.616 55.000 0.00 0.00 0.00 5.73
161 162 0.383949 CATGGCGTATTTTTCGGGGG 59.616 55.000 0.00 0.00 0.00 5.40
162 163 0.256464 ATGGCGTATTTTTCGGGGGA 59.744 50.000 0.00 0.00 0.00 4.81
165 166 1.135315 GGCGTATTTTTCGGGGGAAAC 60.135 52.381 0.00 0.00 0.00 2.78
169 170 3.120095 CGTATTTTTCGGGGGAAACAGTC 60.120 47.826 0.00 0.00 0.00 3.51
170 171 2.740506 TTTTTCGGGGGAAACAGTCT 57.259 45.000 0.00 0.00 0.00 3.24
180 181 3.568430 GGGGAAACAGTCTCAAATTCGTT 59.432 43.478 0.00 0.00 0.00 3.85
197 198 2.498078 TCGTTGCCTTTCCCTTTTGTTT 59.502 40.909 0.00 0.00 0.00 2.83
202 203 2.367241 GCCTTTCCCTTTTGTTTGGCTA 59.633 45.455 0.00 0.00 36.52 3.93
203 204 3.007940 GCCTTTCCCTTTTGTTTGGCTAT 59.992 43.478 0.00 0.00 36.52 2.97
204 205 4.221924 GCCTTTCCCTTTTGTTTGGCTATA 59.778 41.667 0.00 0.00 36.52 1.31
223 224 7.745717 GGCTATATATGCCTATATGGAAACCA 58.254 38.462 13.99 0.00 46.38 3.67
225 226 9.277783 GCTATATATGCCTATATGGAAACCAAG 57.722 37.037 13.99 3.03 36.95 3.61
276 277 1.272092 TGCAGGGATGAAAAGGTCAGG 60.272 52.381 0.00 0.00 40.43 3.86
283 284 2.185004 TGAAAAGGTCAGGCTGTAGC 57.815 50.000 15.27 10.79 41.14 3.58
289 290 0.253044 GGTCAGGCTGTAGCAATGGA 59.747 55.000 15.27 0.00 44.36 3.41
296 297 2.279741 GCTGTAGCAATGGATGACGAA 58.720 47.619 0.00 0.00 41.59 3.85
297 298 2.874701 GCTGTAGCAATGGATGACGAAT 59.125 45.455 0.00 0.00 41.59 3.34
298 299 3.303593 GCTGTAGCAATGGATGACGAATG 60.304 47.826 0.00 0.00 41.59 2.67
299 300 4.122046 CTGTAGCAATGGATGACGAATGA 58.878 43.478 0.00 0.00 0.00 2.57
300 301 4.707105 TGTAGCAATGGATGACGAATGAT 58.293 39.130 0.00 0.00 0.00 2.45
302 303 2.882761 AGCAATGGATGACGAATGATGG 59.117 45.455 0.00 0.00 0.00 3.51
303 304 2.880268 GCAATGGATGACGAATGATGGA 59.120 45.455 0.00 0.00 0.00 3.41
305 306 4.202040 GCAATGGATGACGAATGATGGAAA 60.202 41.667 0.00 0.00 0.00 3.13
306 307 5.276270 CAATGGATGACGAATGATGGAAAC 58.724 41.667 0.00 0.00 0.00 2.78
307 308 3.278574 TGGATGACGAATGATGGAAACC 58.721 45.455 0.00 0.00 0.00 3.27
308 309 3.278574 GGATGACGAATGATGGAAACCA 58.721 45.455 0.00 0.00 38.19 3.67
310 311 5.063204 GGATGACGAATGATGGAAACCATA 58.937 41.667 3.13 0.00 45.26 2.74
311 312 5.707298 GGATGACGAATGATGGAAACCATAT 59.293 40.000 3.13 0.00 45.26 1.78
312 313 6.878923 GGATGACGAATGATGGAAACCATATA 59.121 38.462 3.13 0.00 45.26 0.86
313 314 7.065085 GGATGACGAATGATGGAAACCATATAG 59.935 40.741 3.13 0.00 45.26 1.31
314 315 7.061566 TGACGAATGATGGAAACCATATAGA 57.938 36.000 3.13 0.00 45.26 1.98
315 316 7.505258 TGACGAATGATGGAAACCATATAGAA 58.495 34.615 3.13 0.00 45.26 2.10
316 317 7.990314 TGACGAATGATGGAAACCATATAGAAA 59.010 33.333 3.13 0.00 45.26 2.52
317 318 8.154649 ACGAATGATGGAAACCATATAGAAAC 57.845 34.615 3.13 0.00 45.26 2.78
318 319 7.773224 ACGAATGATGGAAACCATATAGAAACA 59.227 33.333 3.13 0.00 45.26 2.83
319 320 8.786898 CGAATGATGGAAACCATATAGAAACAT 58.213 33.333 3.13 0.00 45.26 2.71
339 340 6.653273 ACATCAAACATGTCATAGTTCTCG 57.347 37.500 0.00 0.00 0.00 4.04
343 344 1.139058 ACATGTCATAGTTCTCGGGGC 59.861 52.381 0.00 0.00 0.00 5.80
344 345 0.759346 ATGTCATAGTTCTCGGGGCC 59.241 55.000 0.00 0.00 0.00 5.80
349 350 2.017049 CATAGTTCTCGGGGCCAAAAG 58.983 52.381 4.39 0.00 0.00 2.27
350 351 0.326927 TAGTTCTCGGGGCCAAAAGG 59.673 55.000 4.39 0.00 0.00 3.11
351 352 1.977009 GTTCTCGGGGCCAAAAGGG 60.977 63.158 4.39 0.00 40.85 3.95
352 353 2.157452 TTCTCGGGGCCAAAAGGGA 61.157 57.895 4.39 0.00 40.01 4.20
353 354 1.721093 TTCTCGGGGCCAAAAGGGAA 61.721 55.000 4.39 2.03 40.01 3.97
354 355 1.678970 CTCGGGGCCAAAAGGGAAG 60.679 63.158 4.39 0.00 40.01 3.46
355 356 2.679996 CGGGGCCAAAAGGGAAGG 60.680 66.667 4.39 0.00 40.01 3.46
356 357 2.858655 GGGGCCAAAAGGGAAGGA 59.141 61.111 4.39 0.00 40.01 3.36
359 360 1.429930 GGGCCAAAAGGGAAGGAAAA 58.570 50.000 4.39 0.00 40.01 2.29
360 361 1.771854 GGGCCAAAAGGGAAGGAAAAA 59.228 47.619 4.39 0.00 40.01 1.94
381 382 5.560966 AAATGTTATGCTCGTTGTAAGGG 57.439 39.130 0.00 0.00 0.00 3.95
382 383 3.688694 TGTTATGCTCGTTGTAAGGGT 57.311 42.857 0.00 0.00 0.00 4.34
383 384 4.010667 TGTTATGCTCGTTGTAAGGGTT 57.989 40.909 0.00 0.00 0.00 4.11
384 385 4.391155 TGTTATGCTCGTTGTAAGGGTTT 58.609 39.130 0.00 0.00 0.00 3.27
385 386 4.453136 TGTTATGCTCGTTGTAAGGGTTTC 59.547 41.667 0.00 0.00 0.00 2.78
386 387 2.623878 TGCTCGTTGTAAGGGTTTCA 57.376 45.000 0.00 0.00 0.00 2.69
387 388 3.134574 TGCTCGTTGTAAGGGTTTCAT 57.865 42.857 0.00 0.00 0.00 2.57
388 389 3.482436 TGCTCGTTGTAAGGGTTTCATT 58.518 40.909 0.00 0.00 0.00 2.57
389 390 4.643463 TGCTCGTTGTAAGGGTTTCATTA 58.357 39.130 0.00 0.00 0.00 1.90
390 391 5.064558 TGCTCGTTGTAAGGGTTTCATTAA 58.935 37.500 0.00 0.00 0.00 1.40
391 392 5.708230 TGCTCGTTGTAAGGGTTTCATTAAT 59.292 36.000 0.00 0.00 0.00 1.40
392 393 6.207810 TGCTCGTTGTAAGGGTTTCATTAATT 59.792 34.615 0.00 0.00 0.00 1.40
393 394 7.088272 GCTCGTTGTAAGGGTTTCATTAATTT 58.912 34.615 0.00 0.00 0.00 1.82
394 395 8.238631 GCTCGTTGTAAGGGTTTCATTAATTTA 58.761 33.333 0.00 0.00 0.00 1.40
399 400 9.713713 TTGTAAGGGTTTCATTAATTTAAAGCC 57.286 29.630 22.47 22.47 46.30 4.35
402 403 5.113383 GGGTTTCATTAATTTAAAGCCGGG 58.887 41.667 18.50 0.00 39.95 5.73
403 404 4.569162 GGTTTCATTAATTTAAAGCCGGGC 59.431 41.667 12.11 12.11 0.00 6.13
404 405 3.701532 TCATTAATTTAAAGCCGGGCG 57.298 42.857 14.39 0.00 0.00 6.13
405 406 3.280295 TCATTAATTTAAAGCCGGGCGA 58.720 40.909 14.39 0.00 0.00 5.54
406 407 3.886505 TCATTAATTTAAAGCCGGGCGAT 59.113 39.130 14.39 9.13 0.00 4.58
407 408 3.701532 TTAATTTAAAGCCGGGCGATG 57.298 42.857 14.39 0.00 0.00 3.84
408 409 0.744281 AATTTAAAGCCGGGCGATGG 59.256 50.000 14.39 0.00 0.00 3.51
419 420 2.517166 GCGATGGCCTCCTTTCCC 60.517 66.667 3.32 0.00 0.00 3.97
420 421 2.998097 CGATGGCCTCCTTTCCCA 59.002 61.111 3.32 0.00 0.00 4.37
421 422 1.302949 CGATGGCCTCCTTTCCCAA 59.697 57.895 3.32 0.00 31.43 4.12
422 423 0.323360 CGATGGCCTCCTTTCCCAAA 60.323 55.000 3.32 0.00 31.43 3.28
423 424 1.890573 CGATGGCCTCCTTTCCCAAAA 60.891 52.381 3.32 0.00 31.43 2.44
424 425 2.256306 GATGGCCTCCTTTCCCAAAAA 58.744 47.619 3.32 0.00 31.43 1.94
460 461 6.525976 GTGTTCGTACTATACCTTCAGTCAAC 59.474 42.308 0.00 0.00 0.00 3.18
462 463 5.503927 TCGTACTATACCTTCAGTCAACCT 58.496 41.667 0.00 0.00 0.00 3.50
463 464 5.948162 TCGTACTATACCTTCAGTCAACCTT 59.052 40.000 0.00 0.00 0.00 3.50
464 465 6.435277 TCGTACTATACCTTCAGTCAACCTTT 59.565 38.462 0.00 0.00 0.00 3.11
465 466 7.611467 TCGTACTATACCTTCAGTCAACCTTTA 59.389 37.037 0.00 0.00 0.00 1.85
466 467 7.699812 CGTACTATACCTTCAGTCAACCTTTAC 59.300 40.741 0.00 0.00 0.00 2.01
467 468 7.793948 ACTATACCTTCAGTCAACCTTTACT 57.206 36.000 0.00 0.00 0.00 2.24
468 469 7.612677 ACTATACCTTCAGTCAACCTTTACTG 58.387 38.462 0.00 0.00 43.63 2.74
469 470 3.477530 ACCTTCAGTCAACCTTTACTGC 58.522 45.455 0.00 0.00 42.31 4.40
470 471 3.118038 ACCTTCAGTCAACCTTTACTGCA 60.118 43.478 0.00 0.00 42.31 4.41
471 472 3.251004 CCTTCAGTCAACCTTTACTGCAC 59.749 47.826 0.00 0.00 42.31 4.57
472 473 3.552132 TCAGTCAACCTTTACTGCACA 57.448 42.857 0.00 0.00 42.31 4.57
473 474 3.466836 TCAGTCAACCTTTACTGCACAG 58.533 45.455 0.00 0.00 42.31 3.66
474 475 2.031682 CAGTCAACCTTTACTGCACAGC 60.032 50.000 0.00 0.00 36.96 4.40
475 476 1.946768 GTCAACCTTTACTGCACAGCA 59.053 47.619 0.00 0.00 36.92 4.41
484 485 4.960866 TGCACAGCAGCACCAGGG 62.961 66.667 0.00 0.00 40.11 4.45
485 486 4.962836 GCACAGCAGCACCAGGGT 62.963 66.667 0.00 0.00 0.00 4.34
494 495 4.308526 CACCAGGGTGCTCATGAC 57.691 61.111 5.38 0.00 39.39 3.06
503 504 2.095059 GGGTGCTCATGACAAACACATC 60.095 50.000 12.75 4.25 32.89 3.06
505 506 3.365666 GGTGCTCATGACAAACACATCAG 60.366 47.826 12.75 0.00 32.89 2.90
508 509 4.023792 TGCTCATGACAAACACATCAGAAC 60.024 41.667 0.00 0.00 0.00 3.01
509 510 4.214971 GCTCATGACAAACACATCAGAACT 59.785 41.667 0.00 0.00 0.00 3.01
510 511 5.409520 GCTCATGACAAACACATCAGAACTA 59.590 40.000 0.00 0.00 0.00 2.24
511 512 6.401903 GCTCATGACAAACACATCAGAACTAG 60.402 42.308 0.00 0.00 0.00 2.57
512 513 5.934043 TCATGACAAACACATCAGAACTAGG 59.066 40.000 0.00 0.00 0.00 3.02
513 514 4.065088 TGACAAACACATCAGAACTAGGC 58.935 43.478 0.00 0.00 0.00 3.93
516 517 4.202357 ACAAACACATCAGAACTAGGCTGA 60.202 41.667 16.72 16.72 45.52 4.26
533 534 6.409524 AGGCTGATTTGTTCTGAAAATTGA 57.590 33.333 0.00 0.00 0.00 2.57
539 540 9.858247 CTGATTTGTTCTGAAAATTGACAAATG 57.142 29.630 16.35 4.45 36.74 2.32
541 542 7.606858 TTTGTTCTGAAAATTGACAAATGCA 57.393 28.000 0.00 0.00 0.00 3.96
542 543 7.606858 TTGTTCTGAAAATTGACAAATGCAA 57.393 28.000 0.00 0.00 0.00 4.08
543 544 7.606858 TGTTCTGAAAATTGACAAATGCAAA 57.393 28.000 0.00 0.00 0.00 3.68
553 649 6.406093 TTGACAAATGCAAAACTTGAGTTG 57.594 33.333 0.00 0.00 38.44 3.16
554 650 5.718146 TGACAAATGCAAAACTTGAGTTGA 58.282 33.333 0.00 0.00 38.44 3.18
590 688 2.532250 TCTCTGTGATGTGGAGGCTA 57.468 50.000 0.00 0.00 0.00 3.93
592 690 4.184649 TCTCTGTGATGTGGAGGCTATA 57.815 45.455 0.00 0.00 0.00 1.31
599 697 4.572389 GTGATGTGGAGGCTATAGTTTGTG 59.428 45.833 0.84 0.00 0.00 3.33
600 698 4.225042 TGATGTGGAGGCTATAGTTTGTGT 59.775 41.667 0.84 0.00 0.00 3.72
601 699 4.634012 TGTGGAGGCTATAGTTTGTGTT 57.366 40.909 0.84 0.00 0.00 3.32
602 700 4.323417 TGTGGAGGCTATAGTTTGTGTTG 58.677 43.478 0.84 0.00 0.00 3.33
603 701 4.202419 TGTGGAGGCTATAGTTTGTGTTGT 60.202 41.667 0.84 0.00 0.00 3.32
604 702 4.154195 GTGGAGGCTATAGTTTGTGTTGTG 59.846 45.833 0.84 0.00 0.00 3.33
605 703 3.127030 GGAGGCTATAGTTTGTGTTGTGC 59.873 47.826 0.84 0.00 0.00 4.57
606 704 3.081804 AGGCTATAGTTTGTGTTGTGCC 58.918 45.455 0.84 0.00 38.24 5.01
607 705 3.081804 GGCTATAGTTTGTGTTGTGCCT 58.918 45.455 0.84 0.00 35.44 4.75
608 706 3.506067 GGCTATAGTTTGTGTTGTGCCTT 59.494 43.478 0.84 0.00 35.44 4.35
609 707 4.379499 GGCTATAGTTTGTGTTGTGCCTTC 60.379 45.833 0.84 0.00 35.44 3.46
610 708 4.379499 GCTATAGTTTGTGTTGTGCCTTCC 60.379 45.833 0.84 0.00 0.00 3.46
611 709 2.143876 AGTTTGTGTTGTGCCTTCCT 57.856 45.000 0.00 0.00 0.00 3.36
612 710 1.750778 AGTTTGTGTTGTGCCTTCCTG 59.249 47.619 0.00 0.00 0.00 3.86
613 711 1.476488 GTTTGTGTTGTGCCTTCCTGT 59.524 47.619 0.00 0.00 0.00 4.00
614 712 1.846007 TTGTGTTGTGCCTTCCTGTT 58.154 45.000 0.00 0.00 0.00 3.16
615 713 2.719531 TGTGTTGTGCCTTCCTGTTA 57.280 45.000 0.00 0.00 0.00 2.41
616 714 3.006112 TGTGTTGTGCCTTCCTGTTAA 57.994 42.857 0.00 0.00 0.00 2.01
617 715 2.948979 TGTGTTGTGCCTTCCTGTTAAG 59.051 45.455 0.00 0.00 0.00 1.85
618 716 1.953686 TGTTGTGCCTTCCTGTTAAGC 59.046 47.619 0.00 0.00 0.00 3.09
619 717 2.230660 GTTGTGCCTTCCTGTTAAGCT 58.769 47.619 0.00 0.00 0.00 3.74
620 718 1.896220 TGTGCCTTCCTGTTAAGCTG 58.104 50.000 0.00 0.00 0.00 4.24
621 719 1.419762 TGTGCCTTCCTGTTAAGCTGA 59.580 47.619 0.00 0.00 0.00 4.26
622 720 2.158682 TGTGCCTTCCTGTTAAGCTGAA 60.159 45.455 0.00 0.00 0.00 3.02
623 721 3.084786 GTGCCTTCCTGTTAAGCTGAAT 58.915 45.455 0.00 0.00 0.00 2.57
624 722 3.084039 TGCCTTCCTGTTAAGCTGAATG 58.916 45.455 0.00 0.00 0.00 2.67
625 723 2.159324 GCCTTCCTGTTAAGCTGAATGC 60.159 50.000 0.00 0.00 43.29 3.56
626 724 2.424956 CCTTCCTGTTAAGCTGAATGCC 59.575 50.000 0.00 0.00 44.23 4.40
627 725 2.877097 TCCTGTTAAGCTGAATGCCA 57.123 45.000 0.00 0.00 44.23 4.92
628 726 2.436417 TCCTGTTAAGCTGAATGCCAC 58.564 47.619 0.00 0.00 44.23 5.01
629 727 1.474077 CCTGTTAAGCTGAATGCCACC 59.526 52.381 0.00 0.00 44.23 4.61
630 728 1.474077 CTGTTAAGCTGAATGCCACCC 59.526 52.381 0.00 0.00 44.23 4.61
631 729 1.202989 TGTTAAGCTGAATGCCACCCA 60.203 47.619 0.00 0.00 44.23 4.51
632 730 1.474077 GTTAAGCTGAATGCCACCCAG 59.526 52.381 0.00 0.00 44.23 4.45
640 738 3.536164 TGCCACCCAGCAAGTTTG 58.464 55.556 0.00 0.00 40.56 2.93
656 754 6.942886 CAAGTTTGCATCGCCTTAATTAAA 57.057 33.333 0.00 0.00 0.00 1.52
659 757 6.322491 AGTTTGCATCGCCTTAATTAAACTC 58.678 36.000 0.00 0.00 33.33 3.01
691 789 0.884514 GGCTTTGCCTTCACCTTCTC 59.115 55.000 0.73 0.00 46.69 2.87
696 796 4.646572 CTTTGCCTTCACCTTCTCTAAGT 58.353 43.478 0.00 0.00 0.00 2.24
700 800 5.063880 TGCCTTCACCTTCTCTAAGTTTTC 58.936 41.667 0.00 0.00 0.00 2.29
743 844 5.144692 TCTTCAGGAGAACATCTTGTCAG 57.855 43.478 0.00 0.00 36.43 3.51
767 868 4.348863 AGGCTAATCCTGCTGAATACAG 57.651 45.455 0.00 0.00 45.54 2.74
785 886 2.296471 ACAGTAACACGAGAGGACTTGG 59.704 50.000 0.00 0.00 32.13 3.61
791 892 0.616111 ACGAGAGGACTTGGGCAGAT 60.616 55.000 0.00 0.00 32.13 2.90
818 919 2.691409 TTTCTCCGCTACCATGGAAG 57.309 50.000 21.47 6.15 32.89 3.46
823 924 1.690219 CCGCTACCATGGAAGCTCCT 61.690 60.000 21.47 0.00 37.46 3.69
875 976 3.329542 GATGGTGGAGAGCCGGCAA 62.330 63.158 31.54 5.34 36.79 4.52
878 979 3.050275 GTGGAGAGCCGGCAACAC 61.050 66.667 31.54 25.23 36.79 3.32
884 985 0.603975 AGAGCCGGCAACACTTCTTC 60.604 55.000 31.54 14.10 0.00 2.87
897 998 6.348868 GCAACACTTCTTCCAGAAAATCTAGG 60.349 42.308 0.00 0.00 33.19 3.02
902 1003 5.422214 TCTTCCAGAAAATCTAGGTCCAC 57.578 43.478 0.00 0.00 0.00 4.02
903 1004 4.225267 TCTTCCAGAAAATCTAGGTCCACC 59.775 45.833 0.00 0.00 0.00 4.61
904 1005 3.526899 TCCAGAAAATCTAGGTCCACCA 58.473 45.455 0.00 0.00 38.89 4.17
908 1009 3.459969 AGAAAATCTAGGTCCACCATCCC 59.540 47.826 0.00 0.00 38.89 3.85
926 1028 4.559862 TCCCTGGAGATTCAAGAAAGTC 57.440 45.455 0.00 0.00 0.00 3.01
933 1035 5.013495 TGGAGATTCAAGAAAGTCACCTCAT 59.987 40.000 0.00 0.00 0.00 2.90
948 1050 3.931468 CACCTCATAACTTGACAGAGCAG 59.069 47.826 0.00 0.00 0.00 4.24
954 1056 0.982704 ACTTGACAGAGCAGCAGGAT 59.017 50.000 0.00 0.00 0.00 3.24
957 1059 3.199508 ACTTGACAGAGCAGCAGGATAAT 59.800 43.478 0.00 0.00 0.00 1.28
963 1065 4.639310 ACAGAGCAGCAGGATAATTTGAAG 59.361 41.667 0.00 0.00 0.00 3.02
976 1078 7.349859 AGGATAATTTGAAGACCCATGTAGGTA 59.650 37.037 0.00 0.00 41.42 3.08
983 1088 6.199376 TGAAGACCCATGTAGGTAATAGTGA 58.801 40.000 0.00 0.00 41.42 3.41
996 1101 3.719268 AATAGTGAACCTGCATCACCA 57.281 42.857 13.92 2.76 46.60 4.17
1006 1111 3.087031 CCTGCATCACCAGAAATGTTCT 58.913 45.455 0.00 0.00 41.70 3.01
1008 1113 3.753815 TGCATCACCAGAAATGTTCTCA 58.246 40.909 0.00 0.00 38.11 3.27
1016 1121 1.272490 AGAAATGTTCTCACGCTCGGA 59.728 47.619 0.00 0.00 34.07 4.55
1020 1125 0.965866 TGTTCTCACGCTCGGATCCT 60.966 55.000 10.75 0.00 0.00 3.24
1037 1142 3.334583 TCCTGCTCAAGTATCCAACAC 57.665 47.619 0.00 0.00 0.00 3.32
1061 1166 1.790755 TTGAACGACAAGACCGATGG 58.209 50.000 0.00 0.00 34.20 3.51
1073 1178 0.673644 ACCGATGGCGAAACTTCCAG 60.674 55.000 0.00 0.00 40.82 3.86
1132 1237 0.317160 TTCAGGCAGTGACAGTACCG 59.683 55.000 0.00 0.00 33.71 4.02
1170 1275 4.472108 AGGAAATCTAACGGGGACAATACA 59.528 41.667 0.00 0.00 0.00 2.29
1179 1284 2.610479 CGGGGACAATACAGATCATCGG 60.610 54.545 0.00 0.00 0.00 4.18
1181 1286 2.368875 GGGACAATACAGATCATCGGGT 59.631 50.000 0.00 0.00 0.00 5.28
1192 1297 0.037447 TCATCGGGTGAACATTGCCA 59.963 50.000 0.00 0.00 32.78 4.92
1223 1328 7.080724 CCAAATAAGAGAGCAGAAACTGAAAC 58.919 38.462 2.81 0.00 32.44 2.78
1272 1377 1.198637 GCTGCACCATTTGAGTCTGTC 59.801 52.381 0.00 0.00 0.00 3.51
1360 1465 6.095440 GGAGGTAATGCTGCTTTCTTTATCAA 59.905 38.462 3.87 0.00 0.00 2.57
1367 1472 4.325472 GCTGCTTTCTTTATCAATGTGCAC 59.675 41.667 10.75 10.75 0.00 4.57
1379 1484 1.167851 ATGTGCACGAATGTTCCCAG 58.832 50.000 13.13 0.00 0.00 4.45
1440 1545 6.395426 TTTGATTTATGTGCATCTCCATCC 57.605 37.500 0.00 0.00 0.00 3.51
1489 1594 8.733857 CTCTTTTAGGAGCACATTTAAACTTG 57.266 34.615 0.00 0.00 0.00 3.16
1490 1595 8.458573 TCTTTTAGGAGCACATTTAAACTTGA 57.541 30.769 0.00 0.00 0.00 3.02
1491 1596 8.908903 TCTTTTAGGAGCACATTTAAACTTGAA 58.091 29.630 0.00 0.00 0.00 2.69
1492 1597 9.185192 CTTTTAGGAGCACATTTAAACTTGAAG 57.815 33.333 0.00 0.00 0.00 3.02
1512 1617 6.101997 TGAAGTGTGATGTAGATTACTGCAG 58.898 40.000 13.48 13.48 41.52 4.41
1514 1619 6.286240 AGTGTGATGTAGATTACTGCAGAA 57.714 37.500 23.35 10.86 41.52 3.02
1643 1762 4.874977 GCAGAGACGCGGGGCTAC 62.875 72.222 8.30 1.87 0.00 3.58
1724 1843 0.737219 GCTGAAATGGCAAGATCGCT 59.263 50.000 0.00 0.00 0.00 4.93
1836 1955 2.294233 GCAGGATTCTGAACTTGCACAA 59.706 45.455 4.75 0.00 43.49 3.33
1842 1961 3.541996 TCTGAACTTGCACAACTCAGA 57.458 42.857 12.96 12.96 0.00 3.27
1843 1962 4.077300 TCTGAACTTGCACAACTCAGAT 57.923 40.909 12.96 0.00 0.00 2.90
1848 1967 3.136763 ACTTGCACAACTCAGATCACAG 58.863 45.455 0.00 0.00 0.00 3.66
1869 1988 0.471617 AAATGGAGCTGGGGATCGAG 59.528 55.000 0.00 0.00 0.00 4.04
1956 2075 4.705110 TGAGGAACTGAAGATGGTCAAA 57.295 40.909 0.00 0.00 41.55 2.69
2000 2119 6.342338 AGAACAGTACACCACCTTAGTAAG 57.658 41.667 2.65 2.65 0.00 2.34
2085 2204 1.329292 CGAGTCGAGGAGCTTACTCTG 59.671 57.143 6.73 9.86 42.98 3.35
2174 2293 0.038526 CTTGGAGCAGCTTTGGCAAG 60.039 55.000 0.00 0.00 41.70 4.01
2175 2294 0.467844 TTGGAGCAGCTTTGGCAAGA 60.468 50.000 0.00 0.00 41.70 3.02
2206 2325 1.001503 CTGGCCTGGGAGAGAGAGT 59.998 63.158 3.32 0.00 0.00 3.24
2226 2345 2.394563 GCAGCAGGCGAAAGAGGAC 61.395 63.158 0.00 0.00 0.00 3.85
2227 2346 1.294780 CAGCAGGCGAAAGAGGACT 59.705 57.895 0.00 0.00 0.00 3.85
2261 2380 6.064060 TCGATGAGCAAATCCTATCCAAAAT 58.936 36.000 0.00 0.00 0.00 1.82
2267 2386 6.430007 AGCAAATCCTATCCAAAATCTCTGT 58.570 36.000 0.00 0.00 0.00 3.41
2268 2387 6.545298 AGCAAATCCTATCCAAAATCTCTGTC 59.455 38.462 0.00 0.00 0.00 3.51
2357 2476 3.848582 GCAAGCAAATCTAACGAAGAAGC 59.151 43.478 0.00 0.00 37.89 3.86
2358 2477 4.406943 CAAGCAAATCTAACGAAGAAGCC 58.593 43.478 0.00 0.00 37.89 4.35
2402 2521 7.346698 TGGTTCTGAGGAAGATAGAGAAATGAT 59.653 37.037 0.00 0.00 33.93 2.45
2477 2596 7.918562 TGTTAGAGGAAACATAGCAAAAACAAC 59.081 33.333 0.00 0.00 34.50 3.32
2478 2597 5.842907 AGAGGAAACATAGCAAAAACAACC 58.157 37.500 0.00 0.00 0.00 3.77
2519 2638 2.416547 GAGCTGTTGCAGAATCGCTAAA 59.583 45.455 0.00 0.00 42.74 1.85
2562 2681 4.916983 AGCTTCACTTGTTACATTGCAA 57.083 36.364 0.00 0.00 0.00 4.08
2591 2710 2.039974 GCATGGCGTCCATCACACA 61.040 57.895 8.21 0.00 43.15 3.72
2682 2801 0.251073 GCAGGGCAAAAATGGCAGAT 59.749 50.000 4.74 0.00 35.93 2.90
2691 2810 5.295045 GGCAAAAATGGCAGATATTCCAAAG 59.705 40.000 0.00 0.00 35.75 2.77
2919 3038 2.042433 AGAGAGTGAGGAGGCTACAAGT 59.958 50.000 0.00 0.00 0.00 3.16
2920 3039 2.165437 GAGAGTGAGGAGGCTACAAGTG 59.835 54.545 0.00 0.00 0.00 3.16
2962 3081 1.407979 CACTTCCGGTAGGCGAATACT 59.592 52.381 13.15 0.00 37.47 2.12
3051 3170 2.420022 GCAAATAGAGCTGGCGAAAGAA 59.580 45.455 0.00 0.00 0.00 2.52
3088 3207 4.021016 GCCTGGAGAGACTTCTTGAAGTAA 60.021 45.833 14.99 0.00 32.53 2.24
3102 3221 5.964477 TCTTGAAGTAACCAGGAGTATGGAT 59.036 40.000 0.00 0.00 43.57 3.41
3120 3239 4.521146 TGGATCAAAAGAAGGATGCTCTC 58.479 43.478 0.00 0.00 33.57 3.20
3306 3425 5.126779 GCCTCTTACCAGGAAAATAAGGAG 58.873 45.833 0.00 0.00 35.20 3.69
3330 3449 7.736893 AGGTCCTTACAGAACCAATATCATAC 58.263 38.462 0.00 0.00 35.43 2.39
3607 3726 6.751425 TGTGTCTGTGAATGATGTTTGAAAAC 59.249 34.615 0.00 0.00 39.33 2.43
3702 6649 5.942961 TGACCTTTCTGTATAACCCAACAA 58.057 37.500 0.00 0.00 0.00 2.83
3703 6650 6.548321 TGACCTTTCTGTATAACCCAACAAT 58.452 36.000 0.00 0.00 0.00 2.71
3775 6723 4.210331 GGTAACTGCAGAATGATTGGGAT 58.790 43.478 23.35 0.00 39.69 3.85
3776 6724 5.376625 GGTAACTGCAGAATGATTGGGATA 58.623 41.667 23.35 0.00 39.69 2.59
3795 6743 0.625849 ATCCATCACCCAGGGTTGAC 59.374 55.000 9.12 0.00 31.02 3.18
3806 6754 2.354704 CCAGGGTTGACGCTATGAGAAA 60.355 50.000 0.08 0.00 37.38 2.52
3815 6763 6.567687 TGACGCTATGAGAAAATTTTCCAA 57.432 33.333 24.01 14.68 37.92 3.53
3822 6770 7.689400 GCTATGAGAAAATTTTCCAAAATTGCG 59.311 33.333 24.01 8.04 45.16 4.85
3863 6811 2.401583 AATGACACGGCAATAGCAGA 57.598 45.000 0.00 0.00 44.61 4.26
3931 6879 8.950210 CAACAAAAGATCATCCTTACACTGTAT 58.050 33.333 0.00 0.00 0.00 2.29
3958 6906 1.801178 GCTGTAGGTCTGCAACACTTC 59.199 52.381 0.00 0.00 40.09 3.01
3969 6917 6.422223 GTCTGCAACACTTCCGATAAATATG 58.578 40.000 0.00 0.00 0.00 1.78
4026 6974 3.512496 CCCTTTCCCTCCCTCTCTATAC 58.488 54.545 0.00 0.00 0.00 1.47
4072 7020 6.065374 TGATGGGTTTACTTGTGAAAGCTTA 58.935 36.000 0.00 0.00 35.22 3.09
4126 7074 5.718607 AGAATTCTCCTTTGGGGAAATCAAG 59.281 40.000 14.49 0.00 44.58 3.02
4139 7087 4.202151 GGGAAATCAAGTCTGCAGTGTTTT 60.202 41.667 14.67 11.86 0.00 2.43
4145 7093 6.741992 TCAAGTCTGCAGTGTTTTATATGG 57.258 37.500 14.67 0.00 0.00 2.74
4258 7256 2.437413 GGGGAGTTTGGATGTTGAGAC 58.563 52.381 0.00 0.00 0.00 3.36
4374 7924 6.902224 ACTTGTTAAGATTTTGGCAAACAC 57.098 33.333 13.10 9.59 0.00 3.32
4406 7956 6.821665 TGTAATAACTGCCAAAGTGGTATCTC 59.178 38.462 0.00 0.00 40.46 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.001330 GTCGGTGAAATCCATGAATCGTC 59.999 47.826 0.00 0.00 0.00 4.20
2 3 3.001634 CAGTCGGTGAAATCCATGAATCG 59.998 47.826 0.00 0.00 0.00 3.34
3 4 3.242870 GCAGTCGGTGAAATCCATGAATC 60.243 47.826 0.00 0.00 0.00 2.52
4 5 2.684881 GCAGTCGGTGAAATCCATGAAT 59.315 45.455 0.00 0.00 0.00 2.57
6 7 1.003003 TGCAGTCGGTGAAATCCATGA 59.997 47.619 0.00 0.00 0.00 3.07
8 9 1.003580 AGTGCAGTCGGTGAAATCCAT 59.996 47.619 0.00 0.00 0.00 3.41
9 10 0.396435 AGTGCAGTCGGTGAAATCCA 59.604 50.000 0.00 0.00 0.00 3.41
10 11 0.798776 CAGTGCAGTCGGTGAAATCC 59.201 55.000 0.00 0.00 0.00 3.01
13 14 1.153269 TGCAGTGCAGTCGGTGAAA 60.153 52.632 15.37 0.00 33.32 2.69
14 15 1.887242 GTGCAGTGCAGTCGGTGAA 60.887 57.895 20.42 0.00 40.08 3.18
15 16 2.280119 GTGCAGTGCAGTCGGTGA 60.280 61.111 20.42 0.00 40.08 4.02
16 17 2.588596 TGTGCAGTGCAGTCGGTG 60.589 61.111 20.42 0.00 40.08 4.94
17 18 2.588877 GTGTGCAGTGCAGTCGGT 60.589 61.111 20.42 0.00 40.08 4.69
18 19 0.670239 TATGTGTGCAGTGCAGTCGG 60.670 55.000 20.42 0.00 40.08 4.79
19 20 0.717784 CTATGTGTGCAGTGCAGTCG 59.282 55.000 20.42 0.11 40.08 4.18
20 21 1.800805 ACTATGTGTGCAGTGCAGTC 58.199 50.000 20.42 14.81 40.08 3.51
21 22 2.146342 GAACTATGTGTGCAGTGCAGT 58.854 47.619 20.42 8.97 40.08 4.40
22 23 2.420642 AGAACTATGTGTGCAGTGCAG 58.579 47.619 20.42 8.24 40.08 4.41
23 24 2.549064 AGAACTATGTGTGCAGTGCA 57.451 45.000 15.37 15.37 35.60 4.57
24 25 2.807967 TCAAGAACTATGTGTGCAGTGC 59.192 45.455 8.58 8.58 0.00 4.40
25 26 5.391310 GGAATCAAGAACTATGTGTGCAGTG 60.391 44.000 0.00 0.00 0.00 3.66
26 27 4.697352 GGAATCAAGAACTATGTGTGCAGT 59.303 41.667 0.00 0.00 0.00 4.40
27 28 4.940046 AGGAATCAAGAACTATGTGTGCAG 59.060 41.667 0.00 0.00 0.00 4.41
28 29 4.910195 AGGAATCAAGAACTATGTGTGCA 58.090 39.130 0.00 0.00 0.00 4.57
29 30 5.886960 AAGGAATCAAGAACTATGTGTGC 57.113 39.130 0.00 0.00 0.00 4.57
30 31 8.446273 CAGTTAAGGAATCAAGAACTATGTGTG 58.554 37.037 0.00 0.00 0.00 3.82
31 32 7.607991 CCAGTTAAGGAATCAAGAACTATGTGT 59.392 37.037 0.00 0.00 0.00 3.72
32 33 7.414540 GCCAGTTAAGGAATCAAGAACTATGTG 60.415 40.741 0.00 0.00 0.00 3.21
33 34 6.599638 GCCAGTTAAGGAATCAAGAACTATGT 59.400 38.462 0.00 0.00 0.00 2.29
34 35 6.599244 TGCCAGTTAAGGAATCAAGAACTATG 59.401 38.462 0.00 0.00 0.00 2.23
35 36 6.721318 TGCCAGTTAAGGAATCAAGAACTAT 58.279 36.000 0.00 0.00 0.00 2.12
36 37 6.121776 TGCCAGTTAAGGAATCAAGAACTA 57.878 37.500 0.00 0.00 0.00 2.24
37 38 4.985538 TGCCAGTTAAGGAATCAAGAACT 58.014 39.130 0.00 0.00 0.00 3.01
38 39 5.705609 TTGCCAGTTAAGGAATCAAGAAC 57.294 39.130 0.00 0.00 0.00 3.01
39 40 6.916360 AATTGCCAGTTAAGGAATCAAGAA 57.084 33.333 0.00 0.00 0.00 2.52
40 41 6.916360 AAATTGCCAGTTAAGGAATCAAGA 57.084 33.333 0.00 0.00 0.00 3.02
41 42 9.487790 TTTTAAATTGCCAGTTAAGGAATCAAG 57.512 29.630 0.00 0.00 0.00 3.02
42 43 9.267084 GTTTTAAATTGCCAGTTAAGGAATCAA 57.733 29.630 0.00 0.00 0.00 2.57
43 44 7.596995 CGTTTTAAATTGCCAGTTAAGGAATCA 59.403 33.333 0.00 0.00 0.00 2.57
44 45 7.411480 GCGTTTTAAATTGCCAGTTAAGGAATC 60.411 37.037 1.73 0.00 0.00 2.52
45 46 6.367695 GCGTTTTAAATTGCCAGTTAAGGAAT 59.632 34.615 1.73 0.00 0.00 3.01
46 47 5.692654 GCGTTTTAAATTGCCAGTTAAGGAA 59.307 36.000 1.73 0.00 0.00 3.36
47 48 5.010213 AGCGTTTTAAATTGCCAGTTAAGGA 59.990 36.000 8.17 0.00 0.00 3.36
48 49 5.118510 CAGCGTTTTAAATTGCCAGTTAAGG 59.881 40.000 8.17 0.00 0.00 2.69
49 50 5.388371 GCAGCGTTTTAAATTGCCAGTTAAG 60.388 40.000 8.17 0.00 0.00 1.85
50 51 4.446051 GCAGCGTTTTAAATTGCCAGTTAA 59.554 37.500 8.17 0.00 0.00 2.01
51 52 3.984633 GCAGCGTTTTAAATTGCCAGTTA 59.015 39.130 8.17 0.00 0.00 2.24
52 53 2.799978 GCAGCGTTTTAAATTGCCAGTT 59.200 40.909 8.17 0.00 0.00 3.16
53 54 2.035832 AGCAGCGTTTTAAATTGCCAGT 59.964 40.909 8.17 0.00 35.44 4.00
54 55 2.676076 AGCAGCGTTTTAAATTGCCAG 58.324 42.857 8.17 4.11 35.44 4.85
55 56 2.810439 AGCAGCGTTTTAAATTGCCA 57.190 40.000 8.17 0.00 35.44 4.92
56 57 3.119637 TCCTAGCAGCGTTTTAAATTGCC 60.120 43.478 8.17 0.00 35.44 4.52
57 58 3.851969 GTCCTAGCAGCGTTTTAAATTGC 59.148 43.478 4.48 4.48 35.09 3.56
58 59 5.041951 TGTCCTAGCAGCGTTTTAAATTG 57.958 39.130 0.00 0.00 0.00 2.32
59 60 4.156008 CCTGTCCTAGCAGCGTTTTAAATT 59.844 41.667 0.00 0.00 35.28 1.82
60 61 3.689649 CCTGTCCTAGCAGCGTTTTAAAT 59.310 43.478 0.00 0.00 35.28 1.40
61 62 3.071479 CCTGTCCTAGCAGCGTTTTAAA 58.929 45.455 0.00 0.00 35.28 1.52
62 63 2.300723 TCCTGTCCTAGCAGCGTTTTAA 59.699 45.455 0.00 0.00 35.28 1.52
63 64 1.897133 TCCTGTCCTAGCAGCGTTTTA 59.103 47.619 0.00 0.00 35.28 1.52
64 65 0.685097 TCCTGTCCTAGCAGCGTTTT 59.315 50.000 0.00 0.00 35.28 2.43
65 66 0.247736 CTCCTGTCCTAGCAGCGTTT 59.752 55.000 0.00 0.00 35.28 3.60
66 67 1.893786 CTCCTGTCCTAGCAGCGTT 59.106 57.895 0.00 0.00 35.28 4.84
67 68 2.716017 GCTCCTGTCCTAGCAGCGT 61.716 63.158 0.00 0.00 38.63 5.07
68 69 1.954362 AAGCTCCTGTCCTAGCAGCG 61.954 60.000 0.00 0.00 41.32 5.18
69 70 0.461693 CAAGCTCCTGTCCTAGCAGC 60.462 60.000 0.00 0.00 41.32 5.25
70 71 0.177604 CCAAGCTCCTGTCCTAGCAG 59.822 60.000 0.00 0.00 41.32 4.24
71 72 1.267574 CCCAAGCTCCTGTCCTAGCA 61.268 60.000 0.00 0.00 41.32 3.49
72 73 0.978146 TCCCAAGCTCCTGTCCTAGC 60.978 60.000 0.00 0.00 39.08 3.42
73 74 1.799933 ATCCCAAGCTCCTGTCCTAG 58.200 55.000 0.00 0.00 0.00 3.02
74 75 2.964209 CTATCCCAAGCTCCTGTCCTA 58.036 52.381 0.00 0.00 0.00 2.94
75 76 1.799933 CTATCCCAAGCTCCTGTCCT 58.200 55.000 0.00 0.00 0.00 3.85
76 77 0.107643 GCTATCCCAAGCTCCTGTCC 59.892 60.000 0.00 0.00 39.50 4.02
77 78 3.696306 GCTATCCCAAGCTCCTGTC 57.304 57.895 0.00 0.00 39.50 3.51
84 85 2.592861 CGGCCAGCTATCCCAAGC 60.593 66.667 2.24 0.00 43.11 4.01
85 86 2.592861 GCGGCCAGCTATCCCAAG 60.593 66.667 2.24 0.00 44.04 3.61
97 98 4.443266 AAGAGCGAGACTGCGGCC 62.443 66.667 0.00 0.00 40.67 6.13
98 99 2.827383 AAGAAGAGCGAGACTGCGGC 62.827 60.000 0.00 0.00 40.67 6.53
99 100 1.075425 CAAGAAGAGCGAGACTGCGG 61.075 60.000 0.00 0.00 40.67 5.69
100 101 0.387878 ACAAGAAGAGCGAGACTGCG 60.388 55.000 0.00 0.00 40.67 5.18
101 102 1.789506 AACAAGAAGAGCGAGACTGC 58.210 50.000 0.00 0.00 0.00 4.40
102 103 6.473397 AATTAAACAAGAAGAGCGAGACTG 57.527 37.500 0.00 0.00 0.00 3.51
103 104 8.035394 TCATAATTAAACAAGAAGAGCGAGACT 58.965 33.333 0.00 0.00 0.00 3.24
104 105 8.186178 TCATAATTAAACAAGAAGAGCGAGAC 57.814 34.615 0.00 0.00 0.00 3.36
105 106 8.820933 CATCATAATTAAACAAGAAGAGCGAGA 58.179 33.333 0.00 0.00 0.00 4.04
106 107 8.607459 ACATCATAATTAAACAAGAAGAGCGAG 58.393 33.333 0.00 0.00 0.00 5.03
107 108 8.492673 ACATCATAATTAAACAAGAAGAGCGA 57.507 30.769 0.00 0.00 0.00 4.93
108 109 9.559958 AAACATCATAATTAAACAAGAAGAGCG 57.440 29.630 0.00 0.00 0.00 5.03
117 118 9.249053 TGGCTTAGGAAACATCATAATTAAACA 57.751 29.630 0.00 0.00 0.00 2.83
120 121 8.859090 CCATGGCTTAGGAAACATCATAATTAA 58.141 33.333 0.00 0.00 0.00 1.40
121 122 7.039784 GCCATGGCTTAGGAAACATCATAATTA 60.040 37.037 29.98 0.00 38.26 1.40
122 123 6.239402 GCCATGGCTTAGGAAACATCATAATT 60.239 38.462 29.98 0.00 38.26 1.40
123 124 5.244626 GCCATGGCTTAGGAAACATCATAAT 59.755 40.000 29.98 0.00 38.26 1.28
124 125 4.584325 GCCATGGCTTAGGAAACATCATAA 59.416 41.667 29.98 0.00 38.26 1.90
125 126 4.144297 GCCATGGCTTAGGAAACATCATA 58.856 43.478 29.98 0.00 38.26 2.15
126 127 2.961062 GCCATGGCTTAGGAAACATCAT 59.039 45.455 29.98 0.00 38.26 2.45
127 128 2.378038 GCCATGGCTTAGGAAACATCA 58.622 47.619 29.98 0.00 38.26 3.07
128 129 1.334869 CGCCATGGCTTAGGAAACATC 59.665 52.381 33.07 0.98 39.32 3.06
129 130 1.340991 ACGCCATGGCTTAGGAAACAT 60.341 47.619 33.07 3.91 39.32 2.71
130 131 0.037590 ACGCCATGGCTTAGGAAACA 59.962 50.000 33.07 0.00 39.32 2.83
131 132 2.032680 TACGCCATGGCTTAGGAAAC 57.967 50.000 33.07 2.52 39.32 2.78
132 133 3.290948 AATACGCCATGGCTTAGGAAA 57.709 42.857 33.07 10.18 39.32 3.13
133 134 3.290948 AAATACGCCATGGCTTAGGAA 57.709 42.857 33.07 10.58 39.32 3.36
134 135 3.290948 AAAATACGCCATGGCTTAGGA 57.709 42.857 33.07 16.33 39.32 2.94
135 136 3.548014 CGAAAAATACGCCATGGCTTAGG 60.548 47.826 33.07 20.33 39.32 2.69
136 137 3.548014 CCGAAAAATACGCCATGGCTTAG 60.548 47.826 33.07 20.69 39.32 2.18
137 138 2.356382 CCGAAAAATACGCCATGGCTTA 59.644 45.455 33.07 28.34 39.32 3.09
138 139 1.134175 CCGAAAAATACGCCATGGCTT 59.866 47.619 33.07 27.07 39.32 4.35
139 140 0.738389 CCGAAAAATACGCCATGGCT 59.262 50.000 33.07 21.97 39.32 4.75
140 141 0.248866 CCCGAAAAATACGCCATGGC 60.249 55.000 27.67 27.67 37.85 4.40
141 142 0.383949 CCCCGAAAAATACGCCATGG 59.616 55.000 7.63 7.63 0.00 3.66
142 143 0.383949 CCCCCGAAAAATACGCCATG 59.616 55.000 0.00 0.00 0.00 3.66
143 144 0.256464 TCCCCCGAAAAATACGCCAT 59.744 50.000 0.00 0.00 0.00 4.40
144 145 0.037877 TTCCCCCGAAAAATACGCCA 59.962 50.000 0.00 0.00 0.00 5.69
145 146 1.135315 GTTTCCCCCGAAAAATACGCC 60.135 52.381 0.00 0.00 39.66 5.68
146 147 1.540707 TGTTTCCCCCGAAAAATACGC 59.459 47.619 0.00 0.00 39.66 4.42
147 148 2.815503 ACTGTTTCCCCCGAAAAATACG 59.184 45.455 0.00 0.00 39.66 3.06
148 149 4.077108 AGACTGTTTCCCCCGAAAAATAC 58.923 43.478 0.00 0.00 39.66 1.89
149 150 4.202482 TGAGACTGTTTCCCCCGAAAAATA 60.202 41.667 0.00 0.00 39.66 1.40
150 151 3.154710 GAGACTGTTTCCCCCGAAAAAT 58.845 45.455 0.00 0.00 39.66 1.82
151 152 2.092321 TGAGACTGTTTCCCCCGAAAAA 60.092 45.455 0.00 0.00 39.66 1.94
152 153 1.491332 TGAGACTGTTTCCCCCGAAAA 59.509 47.619 0.00 0.00 39.66 2.29
153 154 1.133363 TGAGACTGTTTCCCCCGAAA 58.867 50.000 0.00 0.00 35.59 3.46
154 155 1.133363 TTGAGACTGTTTCCCCCGAA 58.867 50.000 0.00 0.00 0.00 4.30
155 156 1.133363 TTTGAGACTGTTTCCCCCGA 58.867 50.000 0.00 0.00 0.00 5.14
156 157 2.200373 ATTTGAGACTGTTTCCCCCG 57.800 50.000 0.00 0.00 0.00 5.73
157 158 2.488153 CGAATTTGAGACTGTTTCCCCC 59.512 50.000 0.00 0.00 0.00 5.40
158 159 3.146847 ACGAATTTGAGACTGTTTCCCC 58.853 45.455 0.00 0.00 0.00 4.81
159 160 4.537015 CAACGAATTTGAGACTGTTTCCC 58.463 43.478 0.00 0.00 37.39 3.97
160 161 3.975035 GCAACGAATTTGAGACTGTTTCC 59.025 43.478 0.00 0.00 37.39 3.13
161 162 3.975035 GGCAACGAATTTGAGACTGTTTC 59.025 43.478 0.00 0.00 37.39 2.78
162 163 3.632145 AGGCAACGAATTTGAGACTGTTT 59.368 39.130 0.00 0.00 46.39 2.83
165 166 3.904136 AAGGCAACGAATTTGAGACTG 57.096 42.857 0.00 0.00 46.39 3.51
169 170 2.558359 AGGGAAAGGCAACGAATTTGAG 59.442 45.455 0.00 0.00 46.39 3.02
170 171 2.593026 AGGGAAAGGCAACGAATTTGA 58.407 42.857 0.00 0.00 46.39 2.69
180 181 1.134250 GCCAAACAAAAGGGAAAGGCA 60.134 47.619 0.00 0.00 40.50 4.75
204 205 8.109634 CCTTACTTGGTTTCCATATAGGCATAT 58.890 37.037 0.00 0.00 37.29 1.78
221 222 4.324267 CTGTTCCACCTAACCTTACTTGG 58.676 47.826 0.00 0.00 0.00 3.61
223 224 3.651423 AGCTGTTCCACCTAACCTTACTT 59.349 43.478 0.00 0.00 0.00 2.24
225 226 3.335579 CAGCTGTTCCACCTAACCTTAC 58.664 50.000 5.25 0.00 0.00 2.34
276 277 1.939974 TCGTCATCCATTGCTACAGC 58.060 50.000 0.00 0.00 42.50 4.40
283 284 5.276270 GTTTCCATCATTCGTCATCCATTG 58.724 41.667 0.00 0.00 0.00 2.82
289 290 7.679783 TCTATATGGTTTCCATCATTCGTCAT 58.320 34.615 4.45 0.00 40.74 3.06
296 297 9.645128 TTGATGTTTCTATATGGTTTCCATCAT 57.355 29.630 4.45 1.36 40.74 2.45
297 298 9.473007 TTTGATGTTTCTATATGGTTTCCATCA 57.527 29.630 4.45 0.00 40.74 3.07
298 299 9.736023 GTTTGATGTTTCTATATGGTTTCCATC 57.264 33.333 4.45 0.00 40.74 3.51
299 300 9.253832 TGTTTGATGTTTCTATATGGTTTCCAT 57.746 29.630 6.52 6.52 46.99 3.41
300 301 8.642935 TGTTTGATGTTTCTATATGGTTTCCA 57.357 30.769 0.00 0.00 38.19 3.53
305 306 8.806429 TGACATGTTTGATGTTTCTATATGGT 57.194 30.769 0.00 0.00 31.52 3.55
311 312 9.725019 AGAACTATGACATGTTTGATGTTTCTA 57.275 29.630 0.00 0.00 28.27 2.10
312 313 8.627208 AGAACTATGACATGTTTGATGTTTCT 57.373 30.769 0.00 0.40 31.52 2.52
313 314 7.689812 CGAGAACTATGACATGTTTGATGTTTC 59.310 37.037 0.00 0.00 31.52 2.78
314 315 7.361201 CCGAGAACTATGACATGTTTGATGTTT 60.361 37.037 0.00 0.00 31.52 2.83
315 316 6.092670 CCGAGAACTATGACATGTTTGATGTT 59.907 38.462 0.00 2.48 31.52 2.71
316 317 5.582269 CCGAGAACTATGACATGTTTGATGT 59.418 40.000 0.00 0.00 34.52 3.06
317 318 5.007039 CCCGAGAACTATGACATGTTTGATG 59.993 44.000 0.00 0.00 0.00 3.07
318 319 5.118990 CCCGAGAACTATGACATGTTTGAT 58.881 41.667 0.00 0.00 0.00 2.57
319 320 4.503910 CCCGAGAACTATGACATGTTTGA 58.496 43.478 0.00 0.00 0.00 2.69
320 321 3.623060 CCCCGAGAACTATGACATGTTTG 59.377 47.826 0.00 0.00 0.00 2.93
336 337 1.678970 CTTCCCTTTTGGCCCCGAG 60.679 63.158 0.00 0.00 38.58 4.63
339 340 0.472925 TTTCCTTCCCTTTTGGCCCC 60.473 55.000 0.00 0.00 38.58 5.80
359 360 5.007682 ACCCTTACAACGAGCATAACATTT 58.992 37.500 0.00 0.00 0.00 2.32
360 361 4.585879 ACCCTTACAACGAGCATAACATT 58.414 39.130 0.00 0.00 0.00 2.71
361 362 4.216411 ACCCTTACAACGAGCATAACAT 57.784 40.909 0.00 0.00 0.00 2.71
362 363 3.688694 ACCCTTACAACGAGCATAACA 57.311 42.857 0.00 0.00 0.00 2.41
363 364 4.453136 TGAAACCCTTACAACGAGCATAAC 59.547 41.667 0.00 0.00 0.00 1.89
365 366 4.274602 TGAAACCCTTACAACGAGCATA 57.725 40.909 0.00 0.00 0.00 3.14
366 367 3.134574 TGAAACCCTTACAACGAGCAT 57.865 42.857 0.00 0.00 0.00 3.79
368 369 5.616488 TTAATGAAACCCTTACAACGAGC 57.384 39.130 0.00 0.00 0.00 5.03
373 374 9.713713 GGCTTTAAATTAATGAAACCCTTACAA 57.286 29.630 3.23 0.00 0.00 2.41
374 375 8.030106 CGGCTTTAAATTAATGAAACCCTTACA 58.970 33.333 3.23 0.00 0.00 2.41
375 376 7.490079 CCGGCTTTAAATTAATGAAACCCTTAC 59.510 37.037 0.00 0.00 0.00 2.34
376 377 7.363968 CCCGGCTTTAAATTAATGAAACCCTTA 60.364 37.037 0.00 0.00 0.00 2.69
378 379 5.105106 CCCGGCTTTAAATTAATGAAACCCT 60.105 40.000 0.00 0.00 0.00 4.34
379 380 5.113383 CCCGGCTTTAAATTAATGAAACCC 58.887 41.667 0.00 0.00 0.00 4.11
380 381 4.569162 GCCCGGCTTTAAATTAATGAAACC 59.431 41.667 0.71 0.00 0.00 3.27
381 382 4.266739 CGCCCGGCTTTAAATTAATGAAAC 59.733 41.667 8.05 0.00 0.00 2.78
382 383 4.158025 TCGCCCGGCTTTAAATTAATGAAA 59.842 37.500 8.05 0.00 0.00 2.69
383 384 3.695060 TCGCCCGGCTTTAAATTAATGAA 59.305 39.130 8.05 0.00 0.00 2.57
384 385 3.280295 TCGCCCGGCTTTAAATTAATGA 58.720 40.909 8.05 0.00 0.00 2.57
385 386 3.701532 TCGCCCGGCTTTAAATTAATG 57.298 42.857 8.05 0.00 0.00 1.90
386 387 3.005367 CCATCGCCCGGCTTTAAATTAAT 59.995 43.478 8.05 0.00 0.00 1.40
387 388 2.359531 CCATCGCCCGGCTTTAAATTAA 59.640 45.455 8.05 0.00 0.00 1.40
388 389 1.950909 CCATCGCCCGGCTTTAAATTA 59.049 47.619 8.05 0.00 0.00 1.40
389 390 0.744281 CCATCGCCCGGCTTTAAATT 59.256 50.000 8.05 0.00 0.00 1.82
390 391 1.734388 GCCATCGCCCGGCTTTAAAT 61.734 55.000 8.05 0.00 46.56 1.40
391 392 2.411504 GCCATCGCCCGGCTTTAAA 61.412 57.895 8.05 0.00 46.56 1.52
392 393 2.826738 GCCATCGCCCGGCTTTAA 60.827 61.111 8.05 0.00 46.56 1.52
402 403 2.517166 GGGAAAGGAGGCCATCGC 60.517 66.667 5.01 0.00 0.00 4.58
403 404 0.323360 TTTGGGAAAGGAGGCCATCG 60.323 55.000 5.01 0.00 0.00 3.84
404 405 1.937191 TTTTGGGAAAGGAGGCCATC 58.063 50.000 5.01 0.00 0.00 3.51
405 406 2.414250 TTTTTGGGAAAGGAGGCCAT 57.586 45.000 5.01 0.00 0.00 4.40
406 407 3.957188 TTTTTGGGAAAGGAGGCCA 57.043 47.368 5.01 0.00 0.00 5.36
424 425 4.957759 AGTACGAACACAACAGCTTTTT 57.042 36.364 0.00 0.00 0.00 1.94
425 426 6.146673 GGTATAGTACGAACACAACAGCTTTT 59.853 38.462 0.00 0.00 0.00 2.27
426 427 5.636543 GGTATAGTACGAACACAACAGCTTT 59.363 40.000 0.00 0.00 0.00 3.51
427 428 5.047519 AGGTATAGTACGAACACAACAGCTT 60.048 40.000 0.00 0.00 0.00 3.74
428 429 4.461781 AGGTATAGTACGAACACAACAGCT 59.538 41.667 0.00 0.00 0.00 4.24
429 430 4.741342 AGGTATAGTACGAACACAACAGC 58.259 43.478 0.00 0.00 0.00 4.40
430 431 6.384224 TGAAGGTATAGTACGAACACAACAG 58.616 40.000 0.00 0.00 0.00 3.16
431 432 6.016024 ACTGAAGGTATAGTACGAACACAACA 60.016 38.462 0.00 0.00 0.00 3.33
432 433 6.385033 ACTGAAGGTATAGTACGAACACAAC 58.615 40.000 0.00 0.00 0.00 3.32
433 434 6.207221 TGACTGAAGGTATAGTACGAACACAA 59.793 38.462 0.00 0.00 0.00 3.33
434 435 5.706833 TGACTGAAGGTATAGTACGAACACA 59.293 40.000 0.00 0.00 0.00 3.72
435 436 6.187125 TGACTGAAGGTATAGTACGAACAC 57.813 41.667 0.00 0.00 0.00 3.32
436 437 6.349611 GGTTGACTGAAGGTATAGTACGAACA 60.350 42.308 0.00 0.00 0.00 3.18
437 438 6.032717 GGTTGACTGAAGGTATAGTACGAAC 58.967 44.000 0.00 0.00 0.00 3.95
438 439 5.948162 AGGTTGACTGAAGGTATAGTACGAA 59.052 40.000 0.00 0.00 0.00 3.85
439 440 5.503927 AGGTTGACTGAAGGTATAGTACGA 58.496 41.667 0.00 0.00 0.00 3.43
440 441 5.831702 AGGTTGACTGAAGGTATAGTACG 57.168 43.478 0.00 0.00 0.00 3.67
441 442 8.747471 AGTAAAGGTTGACTGAAGGTATAGTAC 58.253 37.037 0.00 0.00 0.00 2.73
467 468 4.960866 CCCTGGTGCTGCTGTGCA 62.961 66.667 0.00 0.00 41.05 4.57
468 469 4.962836 ACCCTGGTGCTGCTGTGC 62.963 66.667 0.00 0.00 0.00 4.57
469 470 2.981909 CACCCTGGTGCTGCTGTG 60.982 66.667 2.89 0.00 39.39 3.66
478 479 0.478072 TTTGTCATGAGCACCCTGGT 59.522 50.000 0.00 0.00 0.00 4.00
479 480 0.883833 GTTTGTCATGAGCACCCTGG 59.116 55.000 0.00 0.00 0.00 4.45
480 481 1.267806 GTGTTTGTCATGAGCACCCTG 59.732 52.381 0.00 0.00 0.00 4.45
481 482 1.133823 TGTGTTTGTCATGAGCACCCT 60.134 47.619 0.00 0.00 0.00 4.34
482 483 1.317613 TGTGTTTGTCATGAGCACCC 58.682 50.000 0.00 0.00 0.00 4.61
483 484 2.553602 TGATGTGTTTGTCATGAGCACC 59.446 45.455 0.00 0.00 0.00 5.01
484 485 3.499537 TCTGATGTGTTTGTCATGAGCAC 59.500 43.478 0.00 4.27 0.00 4.40
485 486 3.742385 TCTGATGTGTTTGTCATGAGCA 58.258 40.909 0.00 0.00 0.00 4.26
486 487 4.214971 AGTTCTGATGTGTTTGTCATGAGC 59.785 41.667 0.00 0.00 0.00 4.26
487 488 5.936686 AGTTCTGATGTGTTTGTCATGAG 57.063 39.130 0.00 0.00 0.00 2.90
488 489 5.934043 CCTAGTTCTGATGTGTTTGTCATGA 59.066 40.000 0.00 0.00 0.00 3.07
494 495 4.318332 TCAGCCTAGTTCTGATGTGTTTG 58.682 43.478 7.60 0.00 35.81 2.93
505 506 6.560253 TTTCAGAACAAATCAGCCTAGTTC 57.440 37.500 0.00 0.00 38.99 3.01
508 509 7.540055 GTCAATTTTCAGAACAAATCAGCCTAG 59.460 37.037 0.00 0.00 0.00 3.02
509 510 7.014134 TGTCAATTTTCAGAACAAATCAGCCTA 59.986 33.333 0.00 0.00 0.00 3.93
510 511 6.183360 TGTCAATTTTCAGAACAAATCAGCCT 60.183 34.615 0.00 0.00 0.00 4.58
511 512 5.984926 TGTCAATTTTCAGAACAAATCAGCC 59.015 36.000 0.00 0.00 0.00 4.85
512 513 7.467557 TTGTCAATTTTCAGAACAAATCAGC 57.532 32.000 0.00 0.00 0.00 4.26
513 514 9.858247 CATTTGTCAATTTTCAGAACAAATCAG 57.142 29.630 8.38 0.00 35.12 2.90
516 517 8.211116 TGCATTTGTCAATTTTCAGAACAAAT 57.789 26.923 6.07 6.07 36.96 2.32
517 518 7.606858 TGCATTTGTCAATTTTCAGAACAAA 57.393 28.000 0.00 0.00 0.00 2.83
518 519 7.606858 TTGCATTTGTCAATTTTCAGAACAA 57.393 28.000 0.00 0.00 0.00 2.83
519 520 7.606858 TTTGCATTTGTCAATTTTCAGAACA 57.393 28.000 0.00 0.00 0.00 3.18
520 521 8.177013 AGTTTTGCATTTGTCAATTTTCAGAAC 58.823 29.630 0.00 0.00 0.00 3.01
521 522 8.266392 AGTTTTGCATTTGTCAATTTTCAGAA 57.734 26.923 0.00 0.00 0.00 3.02
522 523 7.846644 AGTTTTGCATTTGTCAATTTTCAGA 57.153 28.000 0.00 0.00 0.00 3.27
523 524 8.176365 TCAAGTTTTGCATTTGTCAATTTTCAG 58.824 29.630 0.00 0.00 0.00 3.02
533 534 7.043565 AGAATCAACTCAAGTTTTGCATTTGT 58.956 30.769 0.00 0.00 35.83 2.83
553 649 7.608308 ACAGAGAAAATAAGCTGTGAGAATC 57.392 36.000 0.00 0.00 39.88 2.52
578 674 4.770795 ACACAAACTATAGCCTCCACATC 58.229 43.478 0.00 0.00 0.00 3.06
590 688 3.569701 CAGGAAGGCACAACACAAACTAT 59.430 43.478 0.00 0.00 0.00 2.12
592 690 1.750778 CAGGAAGGCACAACACAAACT 59.249 47.619 0.00 0.00 0.00 2.66
599 697 2.030805 CAGCTTAACAGGAAGGCACAAC 60.031 50.000 0.00 0.00 0.00 3.32
600 698 2.158682 TCAGCTTAACAGGAAGGCACAA 60.159 45.455 0.00 0.00 0.00 3.33
601 699 1.419762 TCAGCTTAACAGGAAGGCACA 59.580 47.619 0.00 0.00 0.00 4.57
602 700 2.185004 TCAGCTTAACAGGAAGGCAC 57.815 50.000 0.00 0.00 0.00 5.01
603 701 2.949177 TTCAGCTTAACAGGAAGGCA 57.051 45.000 0.00 0.00 0.00 4.75
604 702 2.159324 GCATTCAGCTTAACAGGAAGGC 60.159 50.000 3.57 3.57 39.39 4.35
605 703 2.424956 GGCATTCAGCTTAACAGGAAGG 59.575 50.000 0.00 0.00 44.79 3.46
606 704 3.084039 TGGCATTCAGCTTAACAGGAAG 58.916 45.455 0.00 0.00 44.79 3.46
607 705 2.819608 GTGGCATTCAGCTTAACAGGAA 59.180 45.455 0.00 0.00 44.79 3.36
608 706 2.436417 GTGGCATTCAGCTTAACAGGA 58.564 47.619 0.00 0.00 44.79 3.86
609 707 1.474077 GGTGGCATTCAGCTTAACAGG 59.526 52.381 0.00 0.00 44.79 4.00
610 708 1.474077 GGGTGGCATTCAGCTTAACAG 59.526 52.381 0.00 0.00 44.79 3.16
611 709 1.202989 TGGGTGGCATTCAGCTTAACA 60.203 47.619 0.00 0.00 44.79 2.41
612 710 1.474077 CTGGGTGGCATTCAGCTTAAC 59.526 52.381 7.02 0.00 44.79 2.01
613 711 1.838112 CTGGGTGGCATTCAGCTTAA 58.162 50.000 7.02 0.00 44.79 1.85
614 712 3.575506 CTGGGTGGCATTCAGCTTA 57.424 52.632 7.02 0.00 44.79 3.09
615 713 4.428845 CTGGGTGGCATTCAGCTT 57.571 55.556 7.02 0.00 44.79 3.74
618 716 0.896940 ACTTGCTGGGTGGCATTCAG 60.897 55.000 13.43 13.43 42.09 3.02
619 717 0.469705 AACTTGCTGGGTGGCATTCA 60.470 50.000 0.00 0.00 42.09 2.57
620 718 0.681175 AAACTTGCTGGGTGGCATTC 59.319 50.000 0.00 0.00 42.09 2.67
621 719 0.393820 CAAACTTGCTGGGTGGCATT 59.606 50.000 0.00 0.00 42.09 3.56
622 720 2.051941 CAAACTTGCTGGGTGGCAT 58.948 52.632 0.00 0.00 42.09 4.40
623 721 3.536164 CAAACTTGCTGGGTGGCA 58.464 55.556 0.00 0.00 40.74 4.92
633 731 6.586082 AGTTTAATTAAGGCGATGCAAACTTG 59.414 34.615 0.00 0.00 32.60 3.16
634 732 6.687604 AGTTTAATTAAGGCGATGCAAACTT 58.312 32.000 0.00 0.00 32.60 2.66
635 733 6.072175 TGAGTTTAATTAAGGCGATGCAAACT 60.072 34.615 0.00 0.00 37.60 2.66
636 734 6.090129 TGAGTTTAATTAAGGCGATGCAAAC 58.910 36.000 0.00 0.00 0.00 2.93
637 735 6.260870 TGAGTTTAATTAAGGCGATGCAAA 57.739 33.333 0.00 0.00 0.00 3.68
638 736 5.888691 TGAGTTTAATTAAGGCGATGCAA 57.111 34.783 0.00 0.00 0.00 4.08
639 737 5.356751 ACATGAGTTTAATTAAGGCGATGCA 59.643 36.000 0.00 0.00 0.00 3.96
640 738 5.821204 ACATGAGTTTAATTAAGGCGATGC 58.179 37.500 0.00 0.00 0.00 3.91
641 739 8.142994 AGTACATGAGTTTAATTAAGGCGATG 57.857 34.615 0.00 3.64 0.00 3.84
642 740 8.732746 AAGTACATGAGTTTAATTAAGGCGAT 57.267 30.769 0.00 0.00 0.00 4.58
643 741 8.038944 AGAAGTACATGAGTTTAATTAAGGCGA 58.961 33.333 0.00 0.00 0.00 5.54
644 742 8.197988 AGAAGTACATGAGTTTAATTAAGGCG 57.802 34.615 0.00 0.00 0.00 5.52
645 743 9.384764 AGAGAAGTACATGAGTTTAATTAAGGC 57.615 33.333 0.00 0.00 0.00 4.35
648 746 9.162764 GCCAGAGAAGTACATGAGTTTAATTAA 57.837 33.333 0.00 0.00 0.00 1.40
649 747 8.540388 AGCCAGAGAAGTACATGAGTTTAATTA 58.460 33.333 0.00 0.00 0.00 1.40
650 748 7.398024 AGCCAGAGAAGTACATGAGTTTAATT 58.602 34.615 0.00 0.00 0.00 1.40
651 749 6.951971 AGCCAGAGAAGTACATGAGTTTAAT 58.048 36.000 0.00 0.00 0.00 1.40
652 750 6.360370 AGCCAGAGAAGTACATGAGTTTAA 57.640 37.500 0.00 0.00 0.00 1.52
653 751 6.360370 AAGCCAGAGAAGTACATGAGTTTA 57.640 37.500 0.00 0.00 0.00 2.01
654 752 4.899352 AGCCAGAGAAGTACATGAGTTT 57.101 40.909 0.00 0.00 0.00 2.66
655 753 4.899352 AAGCCAGAGAAGTACATGAGTT 57.101 40.909 0.00 0.00 0.00 3.01
656 754 4.573900 CAAAGCCAGAGAAGTACATGAGT 58.426 43.478 0.00 0.00 0.00 3.41
659 757 3.754188 GCAAAGCCAGAGAAGTACATG 57.246 47.619 0.00 0.00 0.00 3.21
691 789 7.552459 TCAAACAAAAAGAGGGGAAAACTTAG 58.448 34.615 0.00 0.00 0.00 2.18
696 796 8.642935 AAATTTCAAACAAAAAGAGGGGAAAA 57.357 26.923 0.00 0.00 0.00 2.29
700 800 7.552330 TGAAGAAATTTCAAACAAAAAGAGGGG 59.448 33.333 19.99 0.00 0.00 4.79
743 844 5.238214 CTGTATTCAGCAGGATTAGCCTTTC 59.762 44.000 0.00 0.00 38.18 2.62
767 868 1.672145 GCCCAAGTCCTCTCGTGTTAC 60.672 57.143 0.00 0.00 0.00 2.50
785 886 1.601430 GGAGAAATCGCTGAATCTGCC 59.399 52.381 6.54 0.00 0.00 4.85
810 911 1.419012 TGCTATCAGGAGCTTCCATGG 59.581 52.381 4.97 4.97 43.27 3.66
818 919 2.102084 TGTGATGAGTGCTATCAGGAGC 59.898 50.000 0.00 0.00 43.16 4.70
823 924 2.432146 GTCCCTGTGATGAGTGCTATCA 59.568 50.000 0.00 0.00 32.44 2.15
861 962 3.050275 GTGTTGCCGGCTCTCCAC 61.050 66.667 29.70 22.49 0.00 4.02
878 979 9.375821 TGGTGGACCTAGATTTTCTGGAAGAAG 62.376 44.444 0.00 0.00 45.35 2.85
884 985 4.455606 GATGGTGGACCTAGATTTTCTGG 58.544 47.826 0.00 0.00 36.82 3.86
897 998 1.141858 GAATCTCCAGGGATGGTGGAC 59.858 57.143 0.00 0.00 39.28 4.02
902 1003 3.939740 TTCTTGAATCTCCAGGGATGG 57.060 47.619 0.00 0.00 0.00 3.51
903 1004 4.853007 ACTTTCTTGAATCTCCAGGGATG 58.147 43.478 0.00 0.00 0.00 3.51
904 1005 4.537688 TGACTTTCTTGAATCTCCAGGGAT 59.462 41.667 0.00 0.00 0.00 3.85
908 1009 4.904241 AGGTGACTTTCTTGAATCTCCAG 58.096 43.478 7.41 0.00 37.44 3.86
926 1028 3.930336 TGCTCTGTCAAGTTATGAGGTG 58.070 45.455 0.00 0.00 39.19 4.00
933 1035 1.970640 TCCTGCTGCTCTGTCAAGTTA 59.029 47.619 0.00 0.00 0.00 2.24
948 1050 4.646492 ACATGGGTCTTCAAATTATCCTGC 59.354 41.667 0.00 0.00 0.00 4.85
957 1059 7.181305 TCACTATTACCTACATGGGTCTTCAAA 59.819 37.037 0.00 0.00 40.48 2.69
963 1065 5.365895 AGGTTCACTATTACCTACATGGGTC 59.634 44.000 0.00 0.00 42.87 4.46
976 1078 3.264193 TCTGGTGATGCAGGTTCACTATT 59.736 43.478 16.34 0.00 42.48 1.73
983 1088 2.880443 ACATTTCTGGTGATGCAGGTT 58.120 42.857 0.00 0.00 0.00 3.50
996 1101 1.272490 TCCGAGCGTGAGAACATTTCT 59.728 47.619 0.00 0.00 44.21 2.52
1006 1111 2.755876 AGCAGGATCCGAGCGTGA 60.756 61.111 21.48 0.00 0.00 4.35
1008 1113 2.290122 CTTGAGCAGGATCCGAGCGT 62.290 60.000 21.48 12.86 0.00 5.07
1016 1121 3.521126 AGTGTTGGATACTTGAGCAGGAT 59.479 43.478 0.00 0.00 37.61 3.24
1020 1125 3.327757 AGGAAGTGTTGGATACTTGAGCA 59.672 43.478 0.00 0.00 38.42 4.26
1056 1161 1.438651 TTCTGGAAGTTTCGCCATCG 58.561 50.000 0.00 0.00 32.89 3.84
1061 1166 5.049680 TCAGTGTTATTTCTGGAAGTTTCGC 60.050 40.000 0.00 0.00 33.76 4.70
1064 1169 9.586435 CTTTTTCAGTGTTATTTCTGGAAGTTT 57.414 29.630 0.00 0.00 31.87 2.66
1132 1237 4.278419 AGATTTCCTTGCACTTGTTACCAC 59.722 41.667 0.00 0.00 0.00 4.16
1149 1254 5.667466 TCTGTATTGTCCCCGTTAGATTTC 58.333 41.667 0.00 0.00 0.00 2.17
1170 1275 2.292267 GCAATGTTCACCCGATGATCT 58.708 47.619 0.00 0.00 37.11 2.75
1181 1286 0.396278 TGGTGTGGTGGCAATGTTCA 60.396 50.000 0.00 0.00 0.00 3.18
1192 1297 3.327757 TCTGCTCTCTTATTTGGTGTGGT 59.672 43.478 0.00 0.00 0.00 4.16
1197 1302 5.869579 TCAGTTTCTGCTCTCTTATTTGGT 58.130 37.500 0.00 0.00 0.00 3.67
1272 1377 4.107622 CAAACTTGCTGACAACCTCTTTG 58.892 43.478 0.00 0.00 41.49 2.77
1280 1385 2.727123 TCCTCCAAACTTGCTGACAA 57.273 45.000 0.00 0.00 0.00 3.18
1286 1391 4.051237 GTCAACAATTCCTCCAAACTTGC 58.949 43.478 0.00 0.00 0.00 4.01
1346 1451 4.215185 TCGTGCACATTGATAAAGAAAGCA 59.785 37.500 18.64 0.00 0.00 3.91
1360 1465 1.167851 CTGGGAACATTCGTGCACAT 58.832 50.000 18.64 0.00 31.89 3.21
1367 1472 2.813754 TCTTCTTTGCTGGGAACATTCG 59.186 45.455 0.00 0.00 41.51 3.34
1416 1521 6.183360 GGGATGGAGATGCACATAAATCAAAA 60.183 38.462 0.00 0.00 0.00 2.44
1440 1545 2.691526 AGTGCATGCATTCCTGTTATGG 59.308 45.455 25.64 0.00 0.00 2.74
1489 1594 6.333416 TCTGCAGTAATCTACATCACACTTC 58.667 40.000 14.67 0.00 0.00 3.01
1490 1595 6.286240 TCTGCAGTAATCTACATCACACTT 57.714 37.500 14.67 0.00 0.00 3.16
1491 1596 5.921962 TCTGCAGTAATCTACATCACACT 57.078 39.130 14.67 0.00 0.00 3.55
1492 1597 8.824159 ATATTCTGCAGTAATCTACATCACAC 57.176 34.615 14.67 0.00 0.00 3.82
1512 1617 7.096023 CCCGCGTCTCTGCATATAATTATATTC 60.096 40.741 14.17 10.85 34.15 1.75
1514 1619 6.216569 CCCGCGTCTCTGCATATAATTATAT 58.783 40.000 11.51 11.51 34.15 0.86
1643 1762 2.614057 ACCTTCTCAAGTTCAAGTTGCG 59.386 45.455 0.00 0.00 0.00 4.85
1724 1843 2.117051 TCTCTAGCTCCTCGACCACTA 58.883 52.381 0.00 0.00 0.00 2.74
1836 1955 3.370315 GCTCCATTTCCTGTGATCTGAGT 60.370 47.826 0.00 0.00 0.00 3.41
1842 1961 1.064166 CCCAGCTCCATTTCCTGTGAT 60.064 52.381 0.00 0.00 0.00 3.06
1843 1962 0.329261 CCCAGCTCCATTTCCTGTGA 59.671 55.000 0.00 0.00 0.00 3.58
1848 1967 0.536006 CGATCCCCAGCTCCATTTCC 60.536 60.000 0.00 0.00 0.00 3.13
1869 1988 2.432510 AGCTACTACACTGGCTCCATTC 59.567 50.000 0.00 0.00 0.00 2.67
1956 2075 5.032846 TCTTGTGTTGATCCTAATCCCTCT 58.967 41.667 0.00 0.00 0.00 3.69
2000 2119 1.820519 TGATTGCTGCATCCCTTTCAC 59.179 47.619 1.84 0.00 0.00 3.18
2057 2176 2.277628 CCTCGACTCGCTTCTCGC 60.278 66.667 0.00 0.00 38.27 5.03
2058 2177 1.350319 CTCCTCGACTCGCTTCTCG 59.650 63.158 0.00 0.00 40.15 4.04
2085 2204 3.735237 TCTCTGGATGCGAATAGTTCC 57.265 47.619 0.00 0.00 0.00 3.62
2206 2325 1.968017 CCTCTTTCGCCTGCTGCAA 60.968 57.895 3.02 0.00 41.33 4.08
2226 2345 1.712081 CTCATCGAGTTGCCGCAAG 59.288 57.895 5.91 0.00 0.00 4.01
2227 2346 2.390599 GCTCATCGAGTTGCCGCAA 61.391 57.895 0.38 0.38 31.39 4.85
2261 2380 3.038280 TCAAGTTTGGACTGGACAGAGA 58.962 45.455 6.29 0.00 35.91 3.10
2267 2386 3.874383 TTCCATCAAGTTTGGACTGGA 57.126 42.857 0.00 7.29 42.88 3.86
2268 2387 3.636300 TGTTTCCATCAAGTTTGGACTGG 59.364 43.478 0.00 0.00 42.88 4.00
2339 2458 2.223044 CCGGCTTCTTCGTTAGATTTGC 60.223 50.000 0.00 0.00 31.54 3.68
2346 2465 0.108804 CTGCTCCGGCTTCTTCGTTA 60.109 55.000 0.00 0.00 39.59 3.18
2348 2467 2.100879 AACTGCTCCGGCTTCTTCGT 62.101 55.000 0.00 0.00 39.59 3.85
2357 2476 2.125350 GCTCCTCAACTGCTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
2358 2477 1.088340 CATGCTCCTCAACTGCTCCG 61.088 60.000 0.00 0.00 0.00 4.63
2402 2521 4.292186 AGAGCTTGCTTGATTGACCTAA 57.708 40.909 0.00 0.00 0.00 2.69
2450 2569 7.422399 TGTTTTTGCTATGTTTCCTCTAACAC 58.578 34.615 0.00 0.00 40.53 3.32
2477 2596 4.116961 TCGTATTAAGTTGGCTTCATCGG 58.883 43.478 0.00 0.00 36.22 4.18
2478 2597 4.318121 GCTCGTATTAAGTTGGCTTCATCG 60.318 45.833 0.00 0.00 36.22 3.84
2519 2638 3.678965 TCTCCTTATCCAGCTCTGTCT 57.321 47.619 0.00 0.00 0.00 3.41
2562 2681 2.729479 CGCCATGCTCTCCCTCTGT 61.729 63.158 0.00 0.00 0.00 3.41
2667 2786 4.405116 TGGAATATCTGCCATTTTTGCC 57.595 40.909 0.00 0.00 0.00 4.52
2682 2801 1.672363 CGCTGCAGCATCTTTGGAATA 59.328 47.619 36.03 0.00 42.21 1.75
2810 2929 2.646175 GCACGTAGCCTGACCTCCA 61.646 63.158 0.00 0.00 37.23 3.86
2869 2988 1.003355 GAGCTGCCACTAGTGCCAA 60.003 57.895 17.86 3.93 0.00 4.52
2919 3038 2.165234 CACTCTCGGAGAATCTTCAGCA 59.835 50.000 9.32 0.00 34.09 4.41
2920 3039 2.425312 TCACTCTCGGAGAATCTTCAGC 59.575 50.000 9.32 0.00 34.09 4.26
3051 3170 1.202330 CCAGGCTCCTTGACTCAGAT 58.798 55.000 0.00 0.00 0.00 2.90
3088 3207 5.339530 CCTTCTTTTGATCCATACTCCTGGT 60.340 44.000 0.00 0.00 37.57 4.00
3102 3221 6.348786 CGATTTTGAGAGCATCCTTCTTTTGA 60.349 38.462 0.00 0.00 33.66 2.69
3120 3239 0.028505 CCCTCTGCGATGCGATTTTG 59.971 55.000 0.00 0.00 0.00 2.44
3181 3300 3.134262 TGCTCAGATCTCCATTTCCTCAG 59.866 47.826 0.00 0.00 0.00 3.35
3238 3357 4.763793 AGTACTCAAAGGACTAGTTGCGTA 59.236 41.667 0.00 0.00 0.00 4.42
3240 3359 4.167268 GAGTACTCAAAGGACTAGTTGCG 58.833 47.826 18.20 0.00 0.00 4.85
3330 3449 4.698780 CCACCCATGCTATTATCTGACATG 59.301 45.833 0.00 0.00 38.24 3.21
3517 3636 5.344933 GGCTTCGCAAAACAACCTTATTTAG 59.655 40.000 0.00 0.00 0.00 1.85
3697 6644 2.746362 GCTCTTCCACTCTCCATTGTTG 59.254 50.000 0.00 0.00 0.00 3.33
3702 6649 1.558756 CTTGGCTCTTCCACTCTCCAT 59.441 52.381 0.00 0.00 46.55 3.41
3703 6650 0.979665 CTTGGCTCTTCCACTCTCCA 59.020 55.000 0.00 0.00 46.55 3.86
3712 6659 4.715527 ATTTGCTGAATCTTGGCTCTTC 57.284 40.909 0.00 0.00 0.00 2.87
3775 6723 1.843851 GTCAACCCTGGGTGATGGATA 59.156 52.381 21.38 0.00 35.34 2.59
3776 6724 0.625849 GTCAACCCTGGGTGATGGAT 59.374 55.000 21.38 0.00 35.34 3.41
3795 6743 7.689400 GCAATTTTGGAAAATTTTCTCATAGCG 59.311 33.333 25.86 13.67 43.91 4.26
3806 6754 6.428799 CATGTGTTCGCAATTTTGGAAAATT 58.571 32.000 4.56 4.56 46.42 1.82
3815 6763 5.468592 TCTATTTGCATGTGTTCGCAATTT 58.531 33.333 0.00 0.00 46.74 1.82
3848 6796 4.700213 AGTATTTTTCTGCTATTGCCGTGT 59.300 37.500 0.00 0.00 38.71 4.49
3904 6852 6.772716 ACAGTGTAAGGATGATCTTTTGTTGT 59.227 34.615 0.00 0.00 0.00 3.32
3925 6873 5.017490 AGACCTACAGCTACAACATACAGT 58.983 41.667 0.00 0.00 0.00 3.55
3931 6879 1.967779 TGCAGACCTACAGCTACAACA 59.032 47.619 0.00 0.00 32.18 3.33
3958 6906 9.128107 GCACATTATTTTGGACATATTTATCGG 57.872 33.333 0.00 0.00 0.00 4.18
3969 6917 5.248870 CTGGGTAGCACATTATTTTGGAC 57.751 43.478 0.00 0.00 0.00 4.02
4026 6974 5.799960 CAACGCTTATGTTGGTTATCTCTG 58.200 41.667 0.00 0.00 44.27 3.35
4072 7020 7.064016 GTGAGAAAATCGCTATCTTCTGAACTT 59.936 37.037 0.00 0.00 35.43 2.66
4126 7074 6.765989 TGTATCCCATATAAAACACTGCAGAC 59.234 38.462 23.35 1.77 0.00 3.51
4139 7087 3.264193 CCAGCTGCCTTGTATCCCATATA 59.736 47.826 8.66 0.00 0.00 0.86
4145 7093 3.833304 GCCAGCTGCCTTGTATCC 58.167 61.111 8.66 0.00 0.00 2.59
4218 7216 4.705023 CCCCCTGTGAAACTTACCAAATAG 59.295 45.833 0.00 0.00 38.04 1.73
4225 7223 3.503800 AACTCCCCCTGTGAAACTTAC 57.496 47.619 0.00 0.00 38.04 2.34
4228 7226 1.133482 CCAAACTCCCCCTGTGAAACT 60.133 52.381 0.00 0.00 38.04 2.66
4258 7256 5.481200 AGAAACAATCTCATGATTCAGCG 57.519 39.130 0.00 0.00 40.61 5.18
4374 7924 3.066291 TGGCAGTTATTACACCCAGTG 57.934 47.619 0.00 0.00 39.75 3.66
4406 7956 6.704050 CCTTTAATAAAACCAGTTTGGGTGTG 59.296 38.462 0.00 0.00 35.52 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.