Multiple sequence alignment - TraesCS1D01G248000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G248000 chr1D 100.000 4370 0 0 1 4370 341030872 341026503 0.000000e+00 8070.0
1 TraesCS1D01G248000 chr1D 92.965 2516 166 8 938 3444 465903106 465900593 0.000000e+00 3655.0
2 TraesCS1D01G248000 chr1D 89.800 1049 79 19 2530 3562 430228211 430229247 0.000000e+00 1319.0
3 TraesCS1D01G248000 chr1B 94.326 3754 109 30 409 4109 456714747 456711045 0.000000e+00 5657.0
4 TraesCS1D01G248000 chr1B 92.806 2516 170 6 938 3444 642701445 642698932 0.000000e+00 3633.0
5 TraesCS1D01G248000 chr1B 92.131 305 16 2 1 299 456726051 456725749 1.450000e-114 424.0
6 TraesCS1D01G248000 chr1B 94.636 261 12 2 4112 4370 456710104 456709844 1.890000e-108 403.0
7 TraesCS1D01G248000 chr1B 85.950 121 8 4 296 411 456715394 456715278 2.130000e-23 121.0
8 TraesCS1D01G248000 chr3B 92.583 2737 159 12 779 3497 172981949 172979239 0.000000e+00 3890.0
9 TraesCS1D01G248000 chr3B 92.756 2678 155 16 842 3497 146982530 146979870 0.000000e+00 3834.0
10 TraesCS1D01G248000 chr3B 91.755 2729 198 16 714 3427 172092163 172094879 0.000000e+00 3768.0
11 TraesCS1D01G248000 chr3B 90.615 2845 222 25 714 3528 172211621 172214450 0.000000e+00 3733.0
12 TraesCS1D01G248000 chr3B 92.425 2614 171 14 837 3427 172052070 172054679 0.000000e+00 3705.0
13 TraesCS1D01G248000 chr3B 93.160 2500 157 6 938 3427 172170543 172173038 0.000000e+00 3657.0
14 TraesCS1D01G248000 chr3B 88.268 358 34 6 54 409 146983456 146983105 5.230000e-114 422.0
15 TraesCS1D01G248000 chr3B 90.530 264 23 2 54 315 173000420 173000157 9.000000e-92 348.0
16 TraesCS1D01G248000 chr3B 78.750 320 37 16 3568 3859 173005346 173005030 7.460000e-43 185.0
17 TraesCS1D01G248000 chr3B 79.038 291 34 20 565 842 146982859 146982583 1.620000e-39 174.0
18 TraesCS1D01G248000 chr3B 78.378 296 23 21 401 655 172091851 172092146 2.100000e-33 154.0
19 TraesCS1D01G248000 chr3D 92.503 2641 172 12 845 3464 121268889 121266254 0.000000e+00 3757.0
20 TraesCS1D01G248000 chr3D 91.906 2644 188 9 842 3464 121334847 121332209 0.000000e+00 3674.0
21 TraesCS1D01G248000 chr3D 85.986 421 34 13 1 411 121269926 121269521 1.120000e-115 427.0
22 TraesCS1D01G248000 chr3D 78.706 479 36 26 404 842 121269392 121268940 4.340000e-65 259.0
23 TraesCS1D01G248000 chr3D 88.298 188 13 3 664 842 121335085 121334898 2.650000e-52 217.0
24 TraesCS1D01G248000 chr3D 83.511 188 26 5 3568 3753 121339493 121339309 2.090000e-38 171.0
25 TraesCS1D01G248000 chr3D 93.103 58 3 1 837 893 120124777 120124834 2.800000e-12 84.2
26 TraesCS1D01G248000 chr3A 93.501 2508 152 7 938 3438 127858894 127856391 0.000000e+00 3718.0
27 TraesCS1D01G248000 chr3A 91.660 2446 169 17 1150 3562 127071266 127073709 0.000000e+00 3354.0
28 TraesCS1D01G248000 chr3A 85.498 331 31 13 842 1156 127066250 127066579 3.260000e-86 329.0
29 TraesCS1D01G248000 chr3A 78.713 404 38 17 3568 3928 127856446 127856048 4.400000e-55 226.0
30 TraesCS1D01G248000 chr3A 93.407 91 6 0 752 842 127834905 127834815 7.620000e-28 135.0
31 TraesCS1D01G248000 chr3A 78.512 242 21 13 3653 3863 735448340 735448581 3.550000e-26 130.0
32 TraesCS1D01G248000 chr6D 91.704 2676 174 26 930 3562 452127983 452125313 0.000000e+00 3668.0
33 TraesCS1D01G248000 chr6D 93.443 61 4 0 3500 3560 452125293 452125233 1.670000e-14 91.6
34 TraesCS1D01G248000 chr5B 91.179 2664 178 21 930 3562 507803003 507800366 0.000000e+00 3565.0
35 TraesCS1D01G248000 chr5B 94.286 70 2 2 3500 3569 507800346 507800279 5.980000e-19 106.0
36 TraesCS1D01G248000 chr1A 94.245 1390 45 8 551 1916 440780913 440779535 0.000000e+00 2091.0
37 TraesCS1D01G248000 chr1A 97.603 459 11 0 3912 4370 440711798 440711340 0.000000e+00 787.0
38 TraesCS1D01G248000 chr1A 94.660 412 19 3 1 411 440781525 440781116 1.710000e-178 636.0
39 TraesCS1D01G248000 chr1A 97.590 83 2 0 409 491 440780993 440780911 4.560000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G248000 chr1D 341026503 341030872 4369 True 8070.000000 8070 100.000000 1 4370 1 chr1D.!!$R1 4369
1 TraesCS1D01G248000 chr1D 465900593 465903106 2513 True 3655.000000 3655 92.965000 938 3444 1 chr1D.!!$R2 2506
2 TraesCS1D01G248000 chr1D 430228211 430229247 1036 False 1319.000000 1319 89.800000 2530 3562 1 chr1D.!!$F1 1032
3 TraesCS1D01G248000 chr1B 642698932 642701445 2513 True 3633.000000 3633 92.806000 938 3444 1 chr1B.!!$R2 2506
4 TraesCS1D01G248000 chr1B 456709844 456715394 5550 True 2060.333333 5657 91.637333 296 4370 3 chr1B.!!$R3 4074
5 TraesCS1D01G248000 chr3B 172979239 172981949 2710 True 3890.000000 3890 92.583000 779 3497 1 chr3B.!!$R1 2718
6 TraesCS1D01G248000 chr3B 172211621 172214450 2829 False 3733.000000 3733 90.615000 714 3528 1 chr3B.!!$F3 2814
7 TraesCS1D01G248000 chr3B 172052070 172054679 2609 False 3705.000000 3705 92.425000 837 3427 1 chr3B.!!$F1 2590
8 TraesCS1D01G248000 chr3B 172170543 172173038 2495 False 3657.000000 3657 93.160000 938 3427 1 chr3B.!!$F2 2489
9 TraesCS1D01G248000 chr3B 172091851 172094879 3028 False 1961.000000 3768 85.066500 401 3427 2 chr3B.!!$F4 3026
10 TraesCS1D01G248000 chr3B 146979870 146983456 3586 True 1476.666667 3834 86.687333 54 3497 3 chr3B.!!$R4 3443
11 TraesCS1D01G248000 chr3D 121332209 121335085 2876 True 1945.500000 3674 90.102000 664 3464 2 chr3D.!!$R3 2800
12 TraesCS1D01G248000 chr3D 121266254 121269926 3672 True 1481.000000 3757 85.731667 1 3464 3 chr3D.!!$R2 3463
13 TraesCS1D01G248000 chr3A 127071266 127073709 2443 False 3354.000000 3354 91.660000 1150 3562 1 chr3A.!!$F2 2412
14 TraesCS1D01G248000 chr3A 127856048 127858894 2846 True 1972.000000 3718 86.107000 938 3928 2 chr3A.!!$R2 2990
15 TraesCS1D01G248000 chr6D 452125233 452127983 2750 True 1879.800000 3668 92.573500 930 3562 2 chr6D.!!$R1 2632
16 TraesCS1D01G248000 chr5B 507800279 507803003 2724 True 1835.500000 3565 92.732500 930 3569 2 chr5B.!!$R1 2639
17 TraesCS1D01G248000 chr1A 440779535 440781525 1990 True 956.666667 2091 95.498333 1 1916 3 chr1A.!!$R2 1915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 1320 1.301401 GCCGTTGTAGGACAGCACA 60.301 57.895 0.00 0.0 29.20 4.57 F
2309 3097 0.327924 TTGAACTCCATGGCCGTCAT 59.672 50.000 6.96 0.0 36.31 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2682 3470 0.937304 GCTCGTCAAAGAACAGCACA 59.063 50.0 0.0 0.0 0.00 4.57 R
4091 5019 0.459489 TGGACAGCCTTTTTGCACAC 59.541 50.0 0.0 0.0 34.31 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 4.200447 TCCTCTAATCTCCCTTCCGATT 57.800 45.455 0.00 0.00 34.49 3.34
122 124 5.477510 GCAGAAGTGTAGATATCCCTCATG 58.522 45.833 0.00 0.00 0.00 3.07
123 125 5.568423 GCAGAAGTGTAGATATCCCTCATGG 60.568 48.000 0.00 0.00 0.00 3.66
261 273 2.224018 ACACGGCATCAAAGCAACAAAT 60.224 40.909 0.00 0.00 35.83 2.32
269 281 7.022979 GGCATCAAAGCAACAAATTAATTTCC 58.977 34.615 10.53 1.27 35.83 3.13
293 306 8.455682 TCCTCAATGTGGTTACGAAAATAATTC 58.544 33.333 0.97 0.00 0.00 2.17
414 976 2.432146 GGGAATCAAAAGAGGGATTGGC 59.568 50.000 0.00 0.00 34.06 4.52
712 1320 1.301401 GCCGTTGTAGGACAGCACA 60.301 57.895 0.00 0.00 29.20 4.57
1085 1866 0.944311 GACGACAACTCCGTGTGCAT 60.944 55.000 0.00 0.00 40.67 3.96
1232 2020 1.076549 GGATCAACAAGGTGGCCCA 59.923 57.895 0.00 0.00 0.00 5.36
1368 2156 0.745468 GGAACCTCTTCGACGCCTAT 59.255 55.000 0.00 0.00 0.00 2.57
1465 2253 1.668919 GCGTCGAGTTCAAGGTCATGA 60.669 52.381 0.00 0.00 0.00 3.07
1500 2288 2.257371 GACTACTGCGTCGTGGCA 59.743 61.111 3.37 3.37 41.45 4.92
1532 2320 1.467678 ATATTCTGCGAGGGCGAGCT 61.468 55.000 0.00 0.00 44.10 4.09
1705 2493 1.739750 CATCCTCCTCTATGGCCCTT 58.260 55.000 0.00 0.00 35.26 3.95
1899 2687 1.410517 GAGATCGACTCCATTGCTCCA 59.589 52.381 0.00 0.00 39.53 3.86
2309 3097 0.327924 TTGAACTCCATGGCCGTCAT 59.672 50.000 6.96 0.00 36.31 3.06
2336 3124 1.404315 CCACCTTAAGACGGCTCTCAC 60.404 57.143 3.36 0.00 0.00 3.51
2445 3233 1.004440 GGAGCTGCAAGAGACCGTT 60.004 57.895 0.00 0.00 34.07 4.44
2724 3512 0.400213 ACTCCATCGCAACCCAAAGA 59.600 50.000 0.00 0.00 0.00 2.52
3105 3894 2.817056 GGAGAGGCAGAGGATGGGC 61.817 68.421 0.00 0.00 0.00 5.36
3166 3956 1.440145 GGTGGCTGAGATAAAGGCGC 61.440 60.000 0.00 0.00 46.71 6.53
3327 4117 2.358003 GAAGCTGCTGCCGACACT 60.358 61.111 12.44 0.00 40.80 3.55
3337 4127 4.508128 CCGACACTACCGCGGCAT 62.508 66.667 28.58 9.80 38.46 4.40
3450 4251 2.215942 TTCCTCTCGTCCATCACTCA 57.784 50.000 0.00 0.00 0.00 3.41
3773 4668 7.748847 AGCGTACATGATTTCGTCTTATTTTT 58.251 30.769 0.00 0.00 0.00 1.94
3811 4714 1.654317 CTCTGCTCCTGCACAAGATC 58.346 55.000 0.00 0.00 45.31 2.75
3898 4826 4.526262 AGTATAGGCAGCCTAGAACAGATG 59.474 45.833 27.22 0.00 39.70 2.90
4019 4947 6.564854 GCAAATATTTCTTGCAGTGCTTAG 57.435 37.500 17.60 13.45 46.78 2.18
4020 4948 6.095377 GCAAATATTTCTTGCAGTGCTTAGT 58.905 36.000 17.60 0.34 46.78 2.24
4021 4949 6.034256 GCAAATATTTCTTGCAGTGCTTAGTG 59.966 38.462 17.60 7.19 46.78 2.74
4022 4950 3.565905 ATTTCTTGCAGTGCTTAGTGC 57.434 42.857 17.60 0.00 43.25 4.40
4023 4951 1.238439 TTCTTGCAGTGCTTAGTGCC 58.762 50.000 17.60 0.00 42.00 5.01
4024 4952 0.397941 TCTTGCAGTGCTTAGTGCCT 59.602 50.000 17.60 0.00 42.00 4.75
4025 4953 0.520404 CTTGCAGTGCTTAGTGCCTG 59.480 55.000 17.60 0.00 42.00 4.85
4026 4954 0.179020 TTGCAGTGCTTAGTGCCTGT 60.179 50.000 17.60 0.00 40.05 4.00
4027 4955 0.886043 TGCAGTGCTTAGTGCCTGTG 60.886 55.000 17.60 0.00 40.05 3.66
4028 4956 0.886490 GCAGTGCTTAGTGCCTGTGT 60.886 55.000 8.18 0.00 40.05 3.72
4029 4957 1.151668 CAGTGCTTAGTGCCTGTGTC 58.848 55.000 0.00 0.00 42.00 3.67
4030 4958 1.051812 AGTGCTTAGTGCCTGTGTCT 58.948 50.000 0.00 0.00 42.00 3.41
4031 4959 2.029020 CAGTGCTTAGTGCCTGTGTCTA 60.029 50.000 0.00 0.00 42.00 2.59
4032 4960 2.632996 AGTGCTTAGTGCCTGTGTCTAA 59.367 45.455 0.00 0.00 42.00 2.10
4033 4961 3.071023 AGTGCTTAGTGCCTGTGTCTAAA 59.929 43.478 0.00 0.00 42.00 1.85
4034 4962 3.813166 GTGCTTAGTGCCTGTGTCTAAAA 59.187 43.478 0.00 0.00 42.00 1.52
4063 4991 4.156739 GGATCCCAAAAGTCTTAGTTGCAG 59.843 45.833 0.00 0.00 0.00 4.41
4075 5003 6.599638 AGTCTTAGTTGCAGAAAGTTCTTTGT 59.400 34.615 2.38 0.00 34.74 2.83
4091 5019 9.436957 AAGTTCTTTGTTAGTGTATATCCACAG 57.563 33.333 0.93 0.00 37.82 3.66
4102 5030 6.072508 AGTGTATATCCACAGTGTGCAAAAAG 60.073 38.462 18.21 3.19 37.82 2.27
4104 5032 0.459489 TCCACAGTGTGCAAAAAGGC 59.541 50.000 18.21 0.00 31.34 4.35
4106 5034 1.563111 CACAGTGTGCAAAAAGGCTG 58.437 50.000 10.97 0.00 34.04 4.85
4107 5035 1.135024 CACAGTGTGCAAAAAGGCTGT 60.135 47.619 10.97 0.00 37.63 4.40
4108 5036 1.134946 ACAGTGTGCAAAAAGGCTGTC 59.865 47.619 0.00 0.00 32.52 3.51
4110 5038 0.459489 GTGTGCAAAAAGGCTGTCCA 59.541 50.000 0.00 0.00 33.74 4.02
4118 5985 4.824289 CAAAAAGGCTGTCCATAAGCAAT 58.176 39.130 0.00 0.00 42.69 3.56
4170 6037 0.618458 TGGAACCTGGGTCTATGCAC 59.382 55.000 12.27 0.00 0.00 4.57
4184 6051 5.047660 GGTCTATGCACACCCACATTAAAAA 60.048 40.000 0.00 0.00 0.00 1.94
4292 6159 4.725556 TTCGTGAAGAAATGACTTTCCG 57.274 40.909 0.00 0.00 41.46 4.30
4295 6162 4.210537 TCGTGAAGAAATGACTTTCCGTTC 59.789 41.667 0.00 0.00 41.46 3.95
4298 6165 6.136743 GTGAAGAAATGACTTTCCGTTCTTC 58.863 40.000 14.53 14.53 41.46 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.710984 CTCGTTTAGTTCTGACTGGTACAT 58.289 41.667 0.00 0.00 38.20 2.29
50 51 3.026630 TGGCTCGTTTAGTTCTGACTG 57.973 47.619 0.00 0.00 36.60 3.51
94 96 6.084738 AGGGATATCTACACTTCTGCCATAA 58.915 40.000 2.05 0.00 0.00 1.90
123 125 7.272037 TGGTTGTTTGTAAGAAGGAAGATTC 57.728 36.000 0.00 0.00 0.00 2.52
261 273 7.747155 TTCGTAACCACATTGAGGAAATTAA 57.253 32.000 7.16 0.00 0.00 1.40
269 281 9.787532 ATGAATTATTTTCGTAACCACATTGAG 57.212 29.630 0.00 0.00 0.00 3.02
293 306 6.127535 ACTGGATGAATGCTCCAAAACTAATG 60.128 38.462 0.00 0.00 42.12 1.90
319 332 6.884832 TCTTCTTCTAAAGGAGTGTGTCAAA 58.115 36.000 0.00 0.00 35.50 2.69
712 1320 2.043450 CGCTGAGAGGAGGGAGGT 60.043 66.667 0.00 0.00 0.00 3.85
1368 2156 0.895530 CCACGAAGTAGGGCTTGAGA 59.104 55.000 0.00 0.00 41.61 3.27
1465 2253 4.143333 CACCGCGGGGTCGATCTT 62.143 66.667 31.76 0.57 46.01 2.40
1506 2294 2.160205 CCCTCGCAGAATATCTCCGTA 58.840 52.381 0.00 0.00 34.09 4.02
1532 2320 3.691342 CGTCCTCCCGCTTGACCA 61.691 66.667 0.00 0.00 0.00 4.02
1899 2687 1.344763 CCGTGAGTCTTCTCCCTGTTT 59.655 52.381 0.00 0.00 39.75 2.83
2309 3097 2.614481 GCCGTCTTAAGGTGGTCATTGA 60.614 50.000 13.31 0.00 0.00 2.57
2445 3233 2.034532 TGCTCGACCGGGTACTGA 59.965 61.111 6.32 0.00 36.31 3.41
2682 3470 0.937304 GCTCGTCAAAGAACAGCACA 59.063 50.000 0.00 0.00 0.00 4.57
3166 3956 1.876664 TCGACTGCTCGAAGTGAGG 59.123 57.895 0.00 0.00 46.04 3.86
3327 4117 1.363807 CTCATCAGATGCCGCGGTA 59.636 57.895 28.70 25.02 0.00 4.02
3337 4127 4.277921 CAGATCGTCTTCATCCTCATCAGA 59.722 45.833 0.00 0.00 0.00 3.27
3498 4362 7.938140 AGCACAACAAGGAGCTTATTATTTA 57.062 32.000 0.00 0.00 32.52 1.40
3609 4504 4.516698 TGATCAACAAAGAGGAAGCAGAAC 59.483 41.667 0.00 0.00 0.00 3.01
3729 4624 2.101415 GCTTTCTTTGCCACAAGAAGGT 59.899 45.455 11.48 0.00 36.51 3.50
3773 4668 2.298163 GAGGGACGGTTCAGTTAACAGA 59.702 50.000 8.61 1.92 40.08 3.41
3867 4795 7.612065 TCTAGGCTGCCTATACTCAATTAAA 57.388 36.000 27.50 3.84 35.36 1.52
3898 4826 2.155279 GGCCACTCTTTTCCTTGACTC 58.845 52.381 0.00 0.00 0.00 3.36
3997 4925 6.034256 GCACTAAGCACTGCAAGAAATATTTG 59.966 38.462 5.17 0.00 44.79 2.32
4000 4928 5.240713 GCACTAAGCACTGCAAGAAATAT 57.759 39.130 3.30 0.00 44.79 1.28
4015 4943 5.527582 ACAAGTTTTAGACACAGGCACTAAG 59.472 40.000 0.00 0.00 36.02 2.18
4016 4944 5.295787 CACAAGTTTTAGACACAGGCACTAA 59.704 40.000 0.00 0.00 36.02 2.24
4017 4945 4.814234 CACAAGTTTTAGACACAGGCACTA 59.186 41.667 0.00 0.00 36.02 2.74
4018 4946 3.627577 CACAAGTTTTAGACACAGGCACT 59.372 43.478 0.00 0.00 43.88 4.40
4019 4947 3.243068 CCACAAGTTTTAGACACAGGCAC 60.243 47.826 0.00 0.00 0.00 5.01
4020 4948 2.948979 CCACAAGTTTTAGACACAGGCA 59.051 45.455 0.00 0.00 0.00 4.75
4021 4949 3.211045 TCCACAAGTTTTAGACACAGGC 58.789 45.455 0.00 0.00 0.00 4.85
4022 4950 4.455877 GGATCCACAAGTTTTAGACACAGG 59.544 45.833 6.95 0.00 0.00 4.00
4023 4951 4.455877 GGGATCCACAAGTTTTAGACACAG 59.544 45.833 15.23 0.00 0.00 3.66
4024 4952 4.141367 TGGGATCCACAAGTTTTAGACACA 60.141 41.667 15.23 0.00 0.00 3.72
4025 4953 4.394729 TGGGATCCACAAGTTTTAGACAC 58.605 43.478 15.23 0.00 0.00 3.67
4026 4954 4.715534 TGGGATCCACAAGTTTTAGACA 57.284 40.909 15.23 0.00 0.00 3.41
4027 4955 6.399639 TTTTGGGATCCACAAGTTTTAGAC 57.600 37.500 15.23 0.00 30.78 2.59
4028 4956 6.648879 CTTTTGGGATCCACAAGTTTTAGA 57.351 37.500 15.23 0.00 36.77 2.10
4075 5003 5.669164 TGCACACTGTGGATATACACTAA 57.331 39.130 18.90 0.00 41.84 2.24
4091 5019 0.459489 TGGACAGCCTTTTTGCACAC 59.541 50.000 0.00 0.00 34.31 3.82
4102 5030 5.008712 GGTACTTTATTGCTTATGGACAGCC 59.991 44.000 0.00 0.00 36.33 4.85
4104 5032 5.531287 GGGGTACTTTATTGCTTATGGACAG 59.469 44.000 0.00 0.00 0.00 3.51
4106 5034 5.691896 AGGGGTACTTTATTGCTTATGGAC 58.308 41.667 0.00 0.00 0.00 4.02
4107 5035 5.987019 AGGGGTACTTTATTGCTTATGGA 57.013 39.130 0.00 0.00 0.00 3.41
4108 5036 6.715264 CCTTAGGGGTACTTTATTGCTTATGG 59.285 42.308 0.00 0.00 0.00 2.74
4237 6104 5.047235 GTGGGTATGACACTAGACCATATCC 60.047 48.000 17.92 17.92 41.90 2.59
4279 6146 5.444122 CACAGAAGAACGGAAAGTCATTTC 58.556 41.667 0.00 0.00 43.48 2.17
4292 6159 3.555956 TGTTTTCTCTCGCACAGAAGAAC 59.444 43.478 0.00 0.00 31.48 3.01
4295 6162 4.536364 TTTGTTTTCTCTCGCACAGAAG 57.464 40.909 0.00 0.00 31.48 2.85
4298 6165 4.442073 CCAATTTTGTTTTCTCTCGCACAG 59.558 41.667 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.