Multiple sequence alignment - TraesCS1D01G247100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G247100 chr1D 100.000 6092 0 0 1 6092 339750215 339744124 0.000000e+00 11250.0
1 TraesCS1D01G247100 chr1B 94.641 3396 123 21 2053 5420 454891655 454888291 0.000000e+00 5208.0
2 TraesCS1D01G247100 chr1B 91.093 1482 55 21 493 1925 454893128 454891675 0.000000e+00 1934.0
3 TraesCS1D01G247100 chr1B 96.418 335 12 0 1 335 570508101 570507767 2.480000e-153 553.0
4 TraesCS1D01G247100 chr1B 95.495 333 14 1 3 334 25238867 25238535 1.160000e-146 531.0
5 TraesCS1D01G247100 chr1B 95.210 334 16 0 1 334 25164961 25164628 4.180000e-146 529.0
6 TraesCS1D01G247100 chr1B 86.920 237 18 3 5856 6092 454886757 454886534 2.820000e-63 254.0
7 TraesCS1D01G247100 chr1B 91.803 183 7 3 5675 5849 454887197 454887015 1.310000e-61 248.0
8 TraesCS1D01G247100 chr1B 78.099 242 34 11 5422 5650 454888233 454887998 1.070000e-27 135.0
9 TraesCS1D01G247100 chr1A 93.299 2149 102 22 3241 5368 439725340 439723213 0.000000e+00 3133.0
10 TraesCS1D01G247100 chr1A 95.268 1120 39 6 2051 3164 439726455 439725344 0.000000e+00 1762.0
11 TraesCS1D01G247100 chr1A 92.176 1112 39 19 335 1430 439728034 439726955 0.000000e+00 1528.0
12 TraesCS1D01G247100 chr1A 91.134 485 30 10 1449 1925 439726988 439726509 0.000000e+00 645.0
13 TraesCS1D01G247100 chr1A 95.482 332 14 1 1 332 560301506 560301176 4.180000e-146 529.0
14 TraesCS1D01G247100 chr1A 93.103 58 4 0 1936 1993 439726518 439726461 1.090000e-12 86.1
15 TraesCS1D01G247100 chr1A 91.111 45 3 1 5434 5478 439723095 439723052 6.590000e-05 60.2
16 TraesCS1D01G247100 chr3A 85.185 729 81 15 3857 4569 339569962 339569245 0.000000e+00 723.0
17 TraesCS1D01G247100 chr3A 84.880 582 67 12 3243 3812 339570535 339569963 8.860000e-158 568.0
18 TraesCS1D01G247100 chr3A 82.143 252 45 0 2324 2575 339619885 339619634 3.700000e-52 217.0
19 TraesCS1D01G247100 chr3B 96.119 335 12 1 1 334 791882300 791882634 4.150000e-151 545.0
20 TraesCS1D01G247100 chr3B 94.752 343 17 1 1 342 61902464 61902122 3.230000e-147 532.0
21 TraesCS1D01G247100 chr3B 86.420 81 9 1 3164 3244 677724660 677724738 3.020000e-13 87.9
22 TraesCS1D01G247100 chr6B 96.096 333 13 0 1 333 224859398 224859730 1.490000e-150 544.0
23 TraesCS1D01G247100 chr6B 88.462 78 5 1 3170 3243 501774035 501773958 2.340000e-14 91.6
24 TraesCS1D01G247100 chr4A 95.224 335 15 1 1 334 702724272 702724606 4.180000e-146 529.0
25 TraesCS1D01G247100 chr5A 95.195 333 16 0 1 333 708963010 708962678 1.500000e-145 527.0
26 TraesCS1D01G247100 chr7D 92.754 69 5 0 2231 2299 616484654 616484586 3.890000e-17 100.0
27 TraesCS1D01G247100 chr5D 88.750 80 6 2 3170 3249 549851360 549851436 1.810000e-15 95.3
28 TraesCS1D01G247100 chr4B 89.333 75 8 0 3170 3244 269174149 269174075 1.810000e-15 95.3
29 TraesCS1D01G247100 chrUn 89.189 74 6 1 3170 3243 31324799 31324870 2.340000e-14 91.6
30 TraesCS1D01G247100 chrUn 100.000 28 0 0 1967 1994 82649123 82649150 1.100000e-02 52.8
31 TraesCS1D01G247100 chr6A 87.500 80 8 1 3172 3249 611567750 611567671 2.340000e-14 91.6
32 TraesCS1D01G247100 chr2D 87.500 80 8 1 3170 3249 376701260 376701183 2.340000e-14 91.6
33 TraesCS1D01G247100 chr6D 89.041 73 4 2 3170 3242 377341739 377341671 3.020000e-13 87.9
34 TraesCS1D01G247100 chr4D 89.091 55 5 1 1934 1988 65179369 65179422 3.940000e-07 67.6
35 TraesCS1D01G247100 chr7A 96.774 31 1 0 1967 1997 85713348 85713318 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G247100 chr1D 339744124 339750215 6091 True 11250.000000 11250 100.000000 1 6092 1 chr1D.!!$R1 6091
1 TraesCS1D01G247100 chr1B 454886534 454893128 6594 True 1555.800000 5208 88.511200 493 6092 5 chr1B.!!$R4 5599
2 TraesCS1D01G247100 chr1A 439723052 439728034 4982 True 1202.383333 3133 92.681833 335 5478 6 chr1A.!!$R2 5143
3 TraesCS1D01G247100 chr3A 339569245 339570535 1290 True 645.500000 723 85.032500 3243 4569 2 chr3A.!!$R2 1326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 847 0.028770 CGCGGCAAAACAGAACAGAA 59.971 50.0 0.0 0.0 0.00 3.02 F
1471 1517 0.305617 GGGTTCGTCGGTTGTGTTTC 59.694 55.0 0.0 0.0 0.00 2.78 F
2162 2222 0.604578 CTGCCACATCCCCACTTTTG 59.395 55.0 0.0 0.0 0.00 2.44 F
2577 2637 1.338107 TCAACATCTGGTCAGGACGT 58.662 50.0 0.0 0.0 0.00 4.34 F
4300 4402 0.392193 AACAGGCAGAGGAGAATGCG 60.392 55.0 0.0 0.0 43.49 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2686 2746 1.112113 GATCTTCAGTAGCGGGGTCA 58.888 55.000 0.00 0.0 0.00 4.02 R
2733 2793 1.314730 GGCCTGGTTTTCGTCAGAAA 58.685 50.000 0.00 0.0 43.91 2.52 R
3231 3298 1.553248 TGGAAACATGTACTCCCTCCG 59.447 52.381 19.38 0.0 33.40 4.63 R
4558 4661 0.036164 TGGAGGTGCGTAATGTTGCT 59.964 50.000 0.00 0.0 0.00 3.91 R
5603 5801 0.104304 CCGGATCTTCCTTACACGGG 59.896 60.000 0.00 0.0 36.45 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.569194 TCTCCATCTAGAGAAGCGAGT 57.431 47.619 0.00 0.00 39.94 4.18
25 26 3.892284 TCTCCATCTAGAGAAGCGAGTT 58.108 45.455 0.00 0.00 39.94 3.01
26 27 5.037383 TCTCCATCTAGAGAAGCGAGTTA 57.963 43.478 0.00 0.00 39.94 2.24
27 28 4.817464 TCTCCATCTAGAGAAGCGAGTTAC 59.183 45.833 0.00 0.00 39.94 2.50
28 29 3.884091 TCCATCTAGAGAAGCGAGTTACC 59.116 47.826 0.00 0.00 0.00 2.85
29 30 3.632604 CCATCTAGAGAAGCGAGTTACCA 59.367 47.826 0.00 0.00 0.00 3.25
30 31 4.261405 CCATCTAGAGAAGCGAGTTACCAG 60.261 50.000 0.00 0.00 0.00 4.00
31 32 3.952931 TCTAGAGAAGCGAGTTACCAGT 58.047 45.455 0.00 0.00 0.00 4.00
32 33 3.690139 TCTAGAGAAGCGAGTTACCAGTG 59.310 47.826 0.00 0.00 0.00 3.66
33 34 1.067495 AGAGAAGCGAGTTACCAGTGC 60.067 52.381 0.00 0.00 0.00 4.40
34 35 0.679505 AGAAGCGAGTTACCAGTGCA 59.320 50.000 0.00 0.00 0.00 4.57
35 36 1.071605 GAAGCGAGTTACCAGTGCAG 58.928 55.000 0.00 0.00 0.00 4.41
36 37 0.679505 AAGCGAGTTACCAGTGCAGA 59.320 50.000 0.00 0.00 0.00 4.26
37 38 0.898320 AGCGAGTTACCAGTGCAGAT 59.102 50.000 0.00 0.00 0.00 2.90
38 39 1.134965 AGCGAGTTACCAGTGCAGATC 60.135 52.381 0.00 0.00 0.00 2.75
39 40 1.550065 CGAGTTACCAGTGCAGATCG 58.450 55.000 0.00 0.00 0.00 3.69
40 41 1.132453 CGAGTTACCAGTGCAGATCGA 59.868 52.381 0.00 0.00 0.00 3.59
41 42 2.531206 GAGTTACCAGTGCAGATCGAC 58.469 52.381 0.00 0.00 0.00 4.20
42 43 1.893137 AGTTACCAGTGCAGATCGACA 59.107 47.619 0.00 0.00 0.00 4.35
43 44 2.497675 AGTTACCAGTGCAGATCGACAT 59.502 45.455 0.00 0.00 0.00 3.06
44 45 2.584492 TACCAGTGCAGATCGACATG 57.416 50.000 0.00 0.00 0.00 3.21
45 46 0.107993 ACCAGTGCAGATCGACATGG 60.108 55.000 0.00 13.05 0.00 3.66
46 47 0.176449 CCAGTGCAGATCGACATGGA 59.824 55.000 0.00 0.00 0.00 3.41
47 48 1.202615 CCAGTGCAGATCGACATGGAT 60.203 52.381 0.00 0.00 0.00 3.41
48 49 2.558378 CAGTGCAGATCGACATGGATT 58.442 47.619 0.00 0.00 0.00 3.01
49 50 2.543012 CAGTGCAGATCGACATGGATTC 59.457 50.000 0.00 0.00 0.00 2.52
50 51 2.433604 AGTGCAGATCGACATGGATTCT 59.566 45.455 0.00 0.00 0.00 2.40
51 52 3.638627 AGTGCAGATCGACATGGATTCTA 59.361 43.478 0.00 0.00 0.00 2.10
52 53 4.282957 AGTGCAGATCGACATGGATTCTAT 59.717 41.667 0.00 0.00 0.00 1.98
53 54 5.478332 AGTGCAGATCGACATGGATTCTATA 59.522 40.000 0.00 0.00 0.00 1.31
54 55 6.015095 AGTGCAGATCGACATGGATTCTATAA 60.015 38.462 0.00 0.00 0.00 0.98
55 56 6.815641 GTGCAGATCGACATGGATTCTATAAT 59.184 38.462 0.00 0.00 0.00 1.28
56 57 7.332926 GTGCAGATCGACATGGATTCTATAATT 59.667 37.037 0.00 0.00 0.00 1.40
57 58 7.332678 TGCAGATCGACATGGATTCTATAATTG 59.667 37.037 0.00 0.00 0.00 2.32
58 59 7.675870 GCAGATCGACATGGATTCTATAATTGC 60.676 40.741 0.00 0.00 0.00 3.56
59 60 7.332678 CAGATCGACATGGATTCTATAATTGCA 59.667 37.037 0.00 0.00 0.00 4.08
60 61 7.548427 AGATCGACATGGATTCTATAATTGCAG 59.452 37.037 0.00 0.00 0.00 4.41
61 62 6.524734 TCGACATGGATTCTATAATTGCAGT 58.475 36.000 0.00 0.00 0.00 4.40
62 63 6.424812 TCGACATGGATTCTATAATTGCAGTG 59.575 38.462 0.00 0.00 0.00 3.66
63 64 6.424812 CGACATGGATTCTATAATTGCAGTGA 59.575 38.462 0.00 0.00 0.00 3.41
64 65 7.041848 CGACATGGATTCTATAATTGCAGTGAA 60.042 37.037 0.00 0.00 0.00 3.18
65 66 8.523915 ACATGGATTCTATAATTGCAGTGAAA 57.476 30.769 0.00 0.00 0.00 2.69
66 67 9.139734 ACATGGATTCTATAATTGCAGTGAAAT 57.860 29.630 0.00 0.00 0.00 2.17
67 68 9.976511 CATGGATTCTATAATTGCAGTGAAATT 57.023 29.630 13.70 13.70 0.00 1.82
68 69 9.976511 ATGGATTCTATAATTGCAGTGAAATTG 57.023 29.630 18.00 3.08 0.00 2.32
69 70 9.187996 TGGATTCTATAATTGCAGTGAAATTGA 57.812 29.630 18.00 5.33 0.00 2.57
73 74 8.750515 TCTATAATTGCAGTGAAATTGATCCA 57.249 30.769 18.00 0.00 0.00 3.41
74 75 8.843262 TCTATAATTGCAGTGAAATTGATCCAG 58.157 33.333 18.00 8.30 0.00 3.86
75 76 4.730949 ATTGCAGTGAAATTGATCCAGG 57.269 40.909 0.00 0.00 0.00 4.45
76 77 1.820519 TGCAGTGAAATTGATCCAGGC 59.179 47.619 0.00 0.00 0.00 4.85
77 78 2.097825 GCAGTGAAATTGATCCAGGCT 58.902 47.619 0.00 0.00 0.00 4.58
78 79 2.494870 GCAGTGAAATTGATCCAGGCTT 59.505 45.455 0.00 0.00 0.00 4.35
79 80 3.428589 GCAGTGAAATTGATCCAGGCTTC 60.429 47.826 0.00 0.00 0.00 3.86
80 81 3.760151 CAGTGAAATTGATCCAGGCTTCA 59.240 43.478 0.00 0.00 0.00 3.02
81 82 3.760684 AGTGAAATTGATCCAGGCTTCAC 59.239 43.478 12.01 12.01 41.77 3.18
82 83 3.507233 GTGAAATTGATCCAGGCTTCACA 59.493 43.478 13.80 0.00 41.33 3.58
83 84 3.760151 TGAAATTGATCCAGGCTTCACAG 59.240 43.478 0.00 0.00 0.00 3.66
84 85 2.431954 ATTGATCCAGGCTTCACAGG 57.568 50.000 0.00 0.00 0.00 4.00
85 86 1.067295 TTGATCCAGGCTTCACAGGT 58.933 50.000 0.00 0.00 0.00 4.00
86 87 1.067295 TGATCCAGGCTTCACAGGTT 58.933 50.000 0.00 0.00 0.00 3.50
87 88 1.271543 TGATCCAGGCTTCACAGGTTG 60.272 52.381 0.00 0.00 0.00 3.77
88 89 1.003580 GATCCAGGCTTCACAGGTTGA 59.996 52.381 0.00 0.00 0.00 3.18
89 90 0.108585 TCCAGGCTTCACAGGTTGAC 59.891 55.000 0.00 0.00 32.26 3.18
90 91 0.179020 CCAGGCTTCACAGGTTGACA 60.179 55.000 0.00 0.00 32.26 3.58
91 92 1.233019 CAGGCTTCACAGGTTGACAG 58.767 55.000 0.00 0.00 32.26 3.51
92 93 1.131638 AGGCTTCACAGGTTGACAGA 58.868 50.000 0.00 0.00 32.26 3.41
93 94 1.701847 AGGCTTCACAGGTTGACAGAT 59.298 47.619 0.00 0.00 32.26 2.90
94 95 2.079925 GGCTTCACAGGTTGACAGATC 58.920 52.381 0.00 0.00 32.26 2.75
95 96 1.728971 GCTTCACAGGTTGACAGATCG 59.271 52.381 0.00 0.00 32.26 3.69
96 97 2.341257 CTTCACAGGTTGACAGATCGG 58.659 52.381 0.00 0.00 32.26 4.18
97 98 1.338107 TCACAGGTTGACAGATCGGT 58.662 50.000 0.00 0.00 0.00 4.69
98 99 2.521126 TCACAGGTTGACAGATCGGTA 58.479 47.619 0.00 0.00 0.00 4.02
99 100 3.096852 TCACAGGTTGACAGATCGGTAT 58.903 45.455 0.00 0.00 0.00 2.73
100 101 4.274978 TCACAGGTTGACAGATCGGTATA 58.725 43.478 0.00 0.00 0.00 1.47
101 102 4.893524 TCACAGGTTGACAGATCGGTATAT 59.106 41.667 0.00 0.00 0.00 0.86
102 103 5.362717 TCACAGGTTGACAGATCGGTATATT 59.637 40.000 0.00 0.00 0.00 1.28
103 104 5.692204 CACAGGTTGACAGATCGGTATATTC 59.308 44.000 0.00 0.00 0.00 1.75
104 105 4.917998 CAGGTTGACAGATCGGTATATTCG 59.082 45.833 0.00 0.00 0.00 3.34
105 106 4.583489 AGGTTGACAGATCGGTATATTCGT 59.417 41.667 0.00 0.00 0.00 3.85
106 107 4.916249 GGTTGACAGATCGGTATATTCGTC 59.084 45.833 0.00 0.00 0.00 4.20
107 108 4.761235 TGACAGATCGGTATATTCGTCC 57.239 45.455 0.00 0.00 0.00 4.79
108 109 4.139038 TGACAGATCGGTATATTCGTCCA 58.861 43.478 0.00 0.00 0.00 4.02
109 110 4.765339 TGACAGATCGGTATATTCGTCCAT 59.235 41.667 0.00 0.00 0.00 3.41
110 111 5.106277 TGACAGATCGGTATATTCGTCCATC 60.106 44.000 0.00 0.00 0.00 3.51
111 112 4.765339 ACAGATCGGTATATTCGTCCATCA 59.235 41.667 0.00 0.00 0.00 3.07
112 113 5.419155 ACAGATCGGTATATTCGTCCATCAT 59.581 40.000 0.00 0.00 0.00 2.45
113 114 5.974158 CAGATCGGTATATTCGTCCATCATC 59.026 44.000 0.00 0.00 0.00 2.92
114 115 5.652452 AGATCGGTATATTCGTCCATCATCA 59.348 40.000 0.00 0.00 0.00 3.07
115 116 5.715434 TCGGTATATTCGTCCATCATCAA 57.285 39.130 0.00 0.00 0.00 2.57
116 117 5.709966 TCGGTATATTCGTCCATCATCAAG 58.290 41.667 0.00 0.00 0.00 3.02
117 118 4.864806 CGGTATATTCGTCCATCATCAAGG 59.135 45.833 0.00 0.00 0.00 3.61
118 119 5.336451 CGGTATATTCGTCCATCATCAAGGA 60.336 44.000 0.00 0.00 0.00 3.36
119 120 6.102663 GGTATATTCGTCCATCATCAAGGAG 58.897 44.000 0.00 0.00 33.85 3.69
120 121 6.071334 GGTATATTCGTCCATCATCAAGGAGA 60.071 42.308 0.00 0.00 33.85 3.71
121 122 4.970860 ATTCGTCCATCATCAAGGAGAT 57.029 40.909 0.00 0.00 37.48 2.75
122 123 4.760530 TTCGTCCATCATCAAGGAGATT 57.239 40.909 0.00 0.00 33.72 2.40
123 124 5.869649 TTCGTCCATCATCAAGGAGATTA 57.130 39.130 0.00 0.00 33.72 1.75
124 125 5.459536 TCGTCCATCATCAAGGAGATTAG 57.540 43.478 0.00 0.00 33.72 1.73
125 126 5.140454 TCGTCCATCATCAAGGAGATTAGA 58.860 41.667 0.00 0.00 33.72 2.10
126 127 5.777223 TCGTCCATCATCAAGGAGATTAGAT 59.223 40.000 0.00 0.00 33.72 1.98
127 128 6.948309 TCGTCCATCATCAAGGAGATTAGATA 59.052 38.462 0.00 0.00 33.72 1.98
128 129 7.617329 TCGTCCATCATCAAGGAGATTAGATAT 59.383 37.037 0.00 0.00 33.72 1.63
129 130 7.920151 CGTCCATCATCAAGGAGATTAGATATC 59.080 40.741 0.00 0.00 33.72 1.63
130 131 8.980596 GTCCATCATCAAGGAGATTAGATATCT 58.019 37.037 10.73 10.73 33.72 1.98
131 132 9.558133 TCCATCATCAAGGAGATTAGATATCTT 57.442 33.333 11.25 0.00 33.72 2.40
158 159 9.871238 ATGTCTCTACGTGAAAATTGTATTACT 57.129 29.630 0.00 0.00 0.00 2.24
159 160 9.350357 TGTCTCTACGTGAAAATTGTATTACTC 57.650 33.333 0.00 0.00 0.00 2.59
160 161 9.350357 GTCTCTACGTGAAAATTGTATTACTCA 57.650 33.333 0.00 0.00 0.00 3.41
163 164 9.647797 TCTACGTGAAAATTGTATTACTCATGT 57.352 29.630 0.00 10.76 37.01 3.21
174 175 9.712305 ATTGTATTACTCATGTAAGTCATAGCC 57.288 33.333 0.00 0.00 41.33 3.93
175 176 8.245195 TGTATTACTCATGTAAGTCATAGCCA 57.755 34.615 0.00 0.00 41.33 4.75
176 177 8.700973 TGTATTACTCATGTAAGTCATAGCCAA 58.299 33.333 0.00 0.00 41.33 4.52
177 178 9.542462 GTATTACTCATGTAAGTCATAGCCAAA 57.458 33.333 0.00 0.00 41.33 3.28
179 180 9.632638 ATTACTCATGTAAGTCATAGCCAAAAT 57.367 29.630 0.00 0.00 41.33 1.82
182 183 9.461312 ACTCATGTAAGTCATAGCCAAAATAAA 57.539 29.630 0.00 0.00 34.67 1.40
183 184 9.941664 CTCATGTAAGTCATAGCCAAAATAAAG 57.058 33.333 0.00 0.00 34.67 1.85
184 185 9.461312 TCATGTAAGTCATAGCCAAAATAAAGT 57.539 29.630 0.00 0.00 34.67 2.66
190 191 9.515226 AAGTCATAGCCAAAATAAAGTTAGTGA 57.485 29.630 0.00 0.00 0.00 3.41
191 192 9.686683 AGTCATAGCCAAAATAAAGTTAGTGAT 57.313 29.630 0.00 0.00 0.00 3.06
194 195 9.884465 CATAGCCAAAATAAAGTTAGTGATAGC 57.116 33.333 0.00 0.00 0.00 2.97
195 196 9.853177 ATAGCCAAAATAAAGTTAGTGATAGCT 57.147 29.630 0.00 0.00 0.00 3.32
196 197 8.581253 AGCCAAAATAAAGTTAGTGATAGCTT 57.419 30.769 0.00 0.00 0.00 3.74
197 198 9.025041 AGCCAAAATAAAGTTAGTGATAGCTTT 57.975 29.630 0.00 3.24 35.29 3.51
198 199 9.076596 GCCAAAATAAAGTTAGTGATAGCTTTG 57.923 33.333 0.00 0.00 33.57 2.77
199 200 9.076596 CCAAAATAAAGTTAGTGATAGCTTTGC 57.923 33.333 0.00 0.00 33.57 3.68
200 201 9.846248 CAAAATAAAGTTAGTGATAGCTTTGCT 57.154 29.630 0.00 0.00 43.41 3.91
207 208 9.846248 AAGTTAGTGATAGCTTTGCTAAATTTG 57.154 29.630 0.00 0.00 44.62 2.32
208 209 9.014297 AGTTAGTGATAGCTTTGCTAAATTTGT 57.986 29.630 0.00 0.00 44.62 2.83
209 210 9.626045 GTTAGTGATAGCTTTGCTAAATTTGTT 57.374 29.630 0.00 0.00 44.62 2.83
210 211 9.840427 TTAGTGATAGCTTTGCTAAATTTGTTC 57.160 29.630 0.00 0.00 44.62 3.18
211 212 7.023575 AGTGATAGCTTTGCTAAATTTGTTCG 58.976 34.615 0.00 0.00 44.62 3.95
212 213 6.801862 GTGATAGCTTTGCTAAATTTGTTCGT 59.198 34.615 0.00 0.00 44.62 3.85
213 214 7.960738 GTGATAGCTTTGCTAAATTTGTTCGTA 59.039 33.333 0.00 0.00 44.62 3.43
214 215 8.175069 TGATAGCTTTGCTAAATTTGTTCGTAG 58.825 33.333 0.00 0.00 44.62 3.51
215 216 6.313744 AGCTTTGCTAAATTTGTTCGTAGT 57.686 33.333 0.00 0.00 36.99 2.73
216 217 6.142817 AGCTTTGCTAAATTTGTTCGTAGTG 58.857 36.000 0.00 0.00 36.99 2.74
217 218 6.017440 AGCTTTGCTAAATTTGTTCGTAGTGA 60.017 34.615 0.00 0.00 36.99 3.41
218 219 6.303259 GCTTTGCTAAATTTGTTCGTAGTGAG 59.697 38.462 0.00 0.00 0.00 3.51
219 220 5.856126 TGCTAAATTTGTTCGTAGTGAGG 57.144 39.130 0.00 0.00 0.00 3.86
220 221 5.543714 TGCTAAATTTGTTCGTAGTGAGGA 58.456 37.500 0.00 0.00 0.00 3.71
221 222 6.170506 TGCTAAATTTGTTCGTAGTGAGGAT 58.829 36.000 0.00 0.00 0.00 3.24
222 223 7.324935 TGCTAAATTTGTTCGTAGTGAGGATA 58.675 34.615 0.00 0.00 0.00 2.59
223 224 7.491372 TGCTAAATTTGTTCGTAGTGAGGATAG 59.509 37.037 0.00 0.00 0.00 2.08
224 225 7.705325 GCTAAATTTGTTCGTAGTGAGGATAGA 59.295 37.037 0.00 0.00 0.00 1.98
225 226 9.582431 CTAAATTTGTTCGTAGTGAGGATAGAA 57.418 33.333 0.00 0.00 0.00 2.10
226 227 7.829378 AATTTGTTCGTAGTGAGGATAGAAC 57.171 36.000 0.00 0.00 38.60 3.01
227 228 4.978083 TGTTCGTAGTGAGGATAGAACC 57.022 45.455 4.08 0.00 37.69 3.62
228 229 4.338012 TGTTCGTAGTGAGGATAGAACCA 58.662 43.478 4.08 0.00 37.69 3.67
229 230 4.954202 TGTTCGTAGTGAGGATAGAACCAT 59.046 41.667 4.08 0.00 37.69 3.55
230 231 5.163550 TGTTCGTAGTGAGGATAGAACCATG 60.164 44.000 4.08 0.00 37.69 3.66
231 232 4.788679 TCGTAGTGAGGATAGAACCATGA 58.211 43.478 0.00 0.00 0.00 3.07
232 233 4.579340 TCGTAGTGAGGATAGAACCATGAC 59.421 45.833 0.00 0.00 0.00 3.06
233 234 4.580995 CGTAGTGAGGATAGAACCATGACT 59.419 45.833 0.00 0.00 0.00 3.41
234 235 5.067936 CGTAGTGAGGATAGAACCATGACTT 59.932 44.000 0.00 0.00 0.00 3.01
235 236 5.350504 AGTGAGGATAGAACCATGACTTG 57.649 43.478 0.00 0.00 0.00 3.16
248 249 5.422214 CCATGACTTGGTTAGGTTCTAGT 57.578 43.478 0.00 0.00 40.99 2.57
249 250 5.420409 CCATGACTTGGTTAGGTTCTAGTC 58.580 45.833 0.00 0.00 40.99 2.59
250 251 5.187967 CCATGACTTGGTTAGGTTCTAGTCT 59.812 44.000 0.00 0.00 40.99 3.24
251 252 6.295916 CCATGACTTGGTTAGGTTCTAGTCTT 60.296 42.308 0.00 0.00 40.99 3.01
252 253 6.342338 TGACTTGGTTAGGTTCTAGTCTTC 57.658 41.667 0.00 0.00 34.56 2.87
253 254 5.245526 TGACTTGGTTAGGTTCTAGTCTTCC 59.754 44.000 0.00 0.00 34.56 3.46
254 255 5.404395 ACTTGGTTAGGTTCTAGTCTTCCT 58.596 41.667 0.00 0.00 0.00 3.36
255 256 5.246429 ACTTGGTTAGGTTCTAGTCTTCCTG 59.754 44.000 0.00 0.00 0.00 3.86
256 257 5.006896 TGGTTAGGTTCTAGTCTTCCTGA 57.993 43.478 0.00 0.00 0.00 3.86
257 258 5.017490 TGGTTAGGTTCTAGTCTTCCTGAG 58.983 45.833 0.00 0.00 0.00 3.35
258 259 4.403113 GGTTAGGTTCTAGTCTTCCTGAGG 59.597 50.000 0.00 0.00 0.00 3.86
259 260 2.462723 AGGTTCTAGTCTTCCTGAGGC 58.537 52.381 0.00 0.00 0.00 4.70
260 261 2.043801 AGGTTCTAGTCTTCCTGAGGCT 59.956 50.000 0.00 0.00 44.22 4.58
261 262 2.835156 GGTTCTAGTCTTCCTGAGGCTT 59.165 50.000 0.00 0.00 36.82 4.35
262 263 3.262151 GGTTCTAGTCTTCCTGAGGCTTT 59.738 47.826 0.00 0.00 36.82 3.51
263 264 4.249661 GTTCTAGTCTTCCTGAGGCTTTG 58.750 47.826 0.00 0.00 36.82 2.77
264 265 2.834549 TCTAGTCTTCCTGAGGCTTTGG 59.165 50.000 0.00 0.00 36.82 3.28
265 266 1.734655 AGTCTTCCTGAGGCTTTGGA 58.265 50.000 0.00 5.48 36.82 3.53
266 267 2.057922 AGTCTTCCTGAGGCTTTGGAA 58.942 47.619 17.28 17.28 36.82 3.53
267 268 2.155279 GTCTTCCTGAGGCTTTGGAAC 58.845 52.381 15.22 6.85 36.11 3.62
268 269 2.057922 TCTTCCTGAGGCTTTGGAACT 58.942 47.619 15.22 0.00 36.11 3.01
269 270 3.008049 GTCTTCCTGAGGCTTTGGAACTA 59.992 47.826 15.22 6.79 36.11 2.24
270 271 3.261897 TCTTCCTGAGGCTTTGGAACTAG 59.738 47.826 15.22 8.56 36.11 2.57
271 272 1.279271 TCCTGAGGCTTTGGAACTAGC 59.721 52.381 6.91 0.00 36.32 3.42
272 273 1.280421 CCTGAGGCTTTGGAACTAGCT 59.720 52.381 0.00 0.00 37.02 3.32
273 274 2.354259 CTGAGGCTTTGGAACTAGCTG 58.646 52.381 0.00 0.00 37.02 4.24
274 275 1.090728 GAGGCTTTGGAACTAGCTGC 58.909 55.000 0.00 0.00 37.02 5.25
275 276 0.674895 AGGCTTTGGAACTAGCTGCG 60.675 55.000 0.00 0.00 37.02 5.18
276 277 0.673644 GGCTTTGGAACTAGCTGCGA 60.674 55.000 0.00 0.00 37.02 5.10
277 278 1.373570 GCTTTGGAACTAGCTGCGAT 58.626 50.000 0.00 0.00 34.74 4.58
278 279 1.740025 GCTTTGGAACTAGCTGCGATT 59.260 47.619 0.00 0.00 34.74 3.34
279 280 2.476854 GCTTTGGAACTAGCTGCGATTG 60.477 50.000 0.00 0.00 34.74 2.67
280 281 2.760634 TTGGAACTAGCTGCGATTGA 57.239 45.000 0.00 0.00 0.00 2.57
281 282 2.988010 TGGAACTAGCTGCGATTGAT 57.012 45.000 0.00 0.00 0.00 2.57
282 283 3.266510 TGGAACTAGCTGCGATTGATT 57.733 42.857 0.00 0.00 0.00 2.57
283 284 2.938451 TGGAACTAGCTGCGATTGATTG 59.062 45.455 0.00 0.00 0.00 2.67
284 285 2.939103 GGAACTAGCTGCGATTGATTGT 59.061 45.455 0.00 0.00 0.00 2.71
285 286 4.119862 GGAACTAGCTGCGATTGATTGTA 58.880 43.478 0.00 0.00 0.00 2.41
286 287 4.570772 GGAACTAGCTGCGATTGATTGTAA 59.429 41.667 0.00 0.00 0.00 2.41
287 288 5.277058 GGAACTAGCTGCGATTGATTGTAAG 60.277 44.000 0.00 0.00 0.00 2.34
288 289 4.122776 ACTAGCTGCGATTGATTGTAAGG 58.877 43.478 0.00 0.00 0.00 2.69
289 290 3.266510 AGCTGCGATTGATTGTAAGGA 57.733 42.857 0.00 0.00 0.00 3.36
290 291 2.939103 AGCTGCGATTGATTGTAAGGAC 59.061 45.455 0.00 0.00 0.00 3.85
291 292 2.939103 GCTGCGATTGATTGTAAGGACT 59.061 45.455 0.00 0.00 0.00 3.85
292 293 3.375299 GCTGCGATTGATTGTAAGGACTT 59.625 43.478 0.00 0.00 0.00 3.01
293 294 4.142600 GCTGCGATTGATTGTAAGGACTTT 60.143 41.667 0.00 0.00 0.00 2.66
294 295 5.295431 TGCGATTGATTGTAAGGACTTTG 57.705 39.130 0.00 0.00 0.00 2.77
295 296 4.155826 TGCGATTGATTGTAAGGACTTTGG 59.844 41.667 0.00 0.00 0.00 3.28
296 297 4.156008 GCGATTGATTGTAAGGACTTTGGT 59.844 41.667 0.00 0.00 0.00 3.67
297 298 5.631026 CGATTGATTGTAAGGACTTTGGTG 58.369 41.667 0.00 0.00 0.00 4.17
298 299 5.391950 CGATTGATTGTAAGGACTTTGGTGG 60.392 44.000 0.00 0.00 0.00 4.61
299 300 4.715534 TGATTGTAAGGACTTTGGTGGA 57.284 40.909 0.00 0.00 0.00 4.02
300 301 5.255397 TGATTGTAAGGACTTTGGTGGAT 57.745 39.130 0.00 0.00 0.00 3.41
301 302 5.009631 TGATTGTAAGGACTTTGGTGGATG 58.990 41.667 0.00 0.00 0.00 3.51
302 303 4.715534 TTGTAAGGACTTTGGTGGATGA 57.284 40.909 0.00 0.00 0.00 2.92
303 304 4.286297 TGTAAGGACTTTGGTGGATGAG 57.714 45.455 0.00 0.00 0.00 2.90
304 305 3.650942 TGTAAGGACTTTGGTGGATGAGT 59.349 43.478 0.00 0.00 0.00 3.41
305 306 4.841813 TGTAAGGACTTTGGTGGATGAGTA 59.158 41.667 0.00 0.00 0.00 2.59
306 307 4.993705 AAGGACTTTGGTGGATGAGTAA 57.006 40.909 0.00 0.00 0.00 2.24
307 308 5.520748 AAGGACTTTGGTGGATGAGTAAT 57.479 39.130 0.00 0.00 0.00 1.89
308 309 6.636454 AAGGACTTTGGTGGATGAGTAATA 57.364 37.500 0.00 0.00 0.00 0.98
309 310 5.990668 AGGACTTTGGTGGATGAGTAATAC 58.009 41.667 0.00 0.00 0.00 1.89
310 311 5.487488 AGGACTTTGGTGGATGAGTAATACA 59.513 40.000 0.00 0.00 0.00 2.29
311 312 6.012858 AGGACTTTGGTGGATGAGTAATACAA 60.013 38.462 0.00 0.00 27.92 2.41
312 313 6.657541 GGACTTTGGTGGATGAGTAATACAAA 59.342 38.462 0.00 0.00 27.92 2.83
313 314 7.339466 GGACTTTGGTGGATGAGTAATACAAAT 59.661 37.037 0.00 0.00 27.92 2.32
314 315 8.650143 ACTTTGGTGGATGAGTAATACAAATT 57.350 30.769 0.00 0.00 27.92 1.82
315 316 9.088987 ACTTTGGTGGATGAGTAATACAAATTT 57.911 29.630 0.00 0.00 27.92 1.82
316 317 9.573133 CTTTGGTGGATGAGTAATACAAATTTC 57.427 33.333 0.00 0.00 27.92 2.17
317 318 8.877864 TTGGTGGATGAGTAATACAAATTTCT 57.122 30.769 0.00 0.00 27.92 2.52
318 319 9.967451 TTGGTGGATGAGTAATACAAATTTCTA 57.033 29.630 0.00 0.00 27.92 2.10
319 320 9.391006 TGGTGGATGAGTAATACAAATTTCTAC 57.609 33.333 0.00 0.00 27.92 2.59
320 321 8.837389 GGTGGATGAGTAATACAAATTTCTACC 58.163 37.037 0.00 0.00 27.92 3.18
321 322 8.837389 GTGGATGAGTAATACAAATTTCTACCC 58.163 37.037 0.00 0.00 27.92 3.69
322 323 7.713507 TGGATGAGTAATACAAATTTCTACCCG 59.286 37.037 0.00 0.00 0.00 5.28
323 324 6.913873 TGAGTAATACAAATTTCTACCCGC 57.086 37.500 0.00 0.00 0.00 6.13
324 325 6.408035 TGAGTAATACAAATTTCTACCCGCA 58.592 36.000 0.00 0.00 0.00 5.69
325 326 6.879993 TGAGTAATACAAATTTCTACCCGCAA 59.120 34.615 0.00 0.00 0.00 4.85
326 327 7.390996 TGAGTAATACAAATTTCTACCCGCAAA 59.609 33.333 0.00 0.00 0.00 3.68
327 328 8.113173 AGTAATACAAATTTCTACCCGCAAAA 57.887 30.769 0.00 0.00 0.00 2.44
328 329 8.578151 AGTAATACAAATTTCTACCCGCAAAAA 58.422 29.630 0.00 0.00 0.00 1.94
386 387 1.282875 GCCAACTCCAAACGAGCAC 59.717 57.895 0.00 0.00 43.01 4.40
539 545 1.814169 GGAGCCGTTCCATCGTTCC 60.814 63.158 0.00 0.00 46.01 3.62
627 648 2.493973 CTCGGGTCAGAGCTGCTC 59.506 66.667 21.72 21.72 0.00 4.26
697 719 3.466791 ATCAGAATCCTGGCGCCGG 62.467 63.158 29.16 29.16 40.76 6.13
816 844 0.040514 CATCGCGGCAAAACAGAACA 60.041 50.000 6.13 0.00 0.00 3.18
817 845 0.238289 ATCGCGGCAAAACAGAACAG 59.762 50.000 6.13 0.00 0.00 3.16
818 846 0.812014 TCGCGGCAAAACAGAACAGA 60.812 50.000 6.13 0.00 0.00 3.41
819 847 0.028770 CGCGGCAAAACAGAACAGAA 59.971 50.000 0.00 0.00 0.00 3.02
820 848 1.477105 GCGGCAAAACAGAACAGAAC 58.523 50.000 0.00 0.00 0.00 3.01
1091 1123 2.034066 GCACCCTGGCTGCAAGTA 59.966 61.111 9.10 0.00 35.30 2.24
1102 1134 2.214181 CTGCAAGTACGAGGTCCGCT 62.214 60.000 0.00 0.00 43.32 5.52
1153 1185 0.320858 TCGCCTTTGCATGTTCGGTA 60.321 50.000 0.00 0.00 37.32 4.02
1292 1335 1.668151 GAGTCCGTGACTGCCAACC 60.668 63.158 10.72 0.00 43.53 3.77
1361 1404 4.083696 CCGTTGGATTGGTTGTACTTGTAC 60.084 45.833 4.14 4.14 0.00 2.90
1471 1517 0.305617 GGGTTCGTCGGTTGTGTTTC 59.694 55.000 0.00 0.00 0.00 2.78
1533 1589 1.052287 GCCTGCGTTTTTCGTGAATG 58.948 50.000 0.00 0.00 42.13 2.67
1572 1628 3.303725 GCGTTGACACACAGATGCTTAAA 60.304 43.478 0.00 0.00 0.00 1.52
1638 1694 4.881273 GCAGGACATATGTATGTGAACCAA 59.119 41.667 8.71 0.00 46.20 3.67
1767 1823 8.415192 TGCATTTCAATTCTTTCTGCAATATC 57.585 30.769 0.00 0.00 35.42 1.63
1993 2052 8.434589 ACTTCAATTATTTTGGAATGAAGGGA 57.565 30.769 15.32 0.00 36.72 4.20
1994 2053 8.314021 ACTTCAATTATTTTGGAATGAAGGGAC 58.686 33.333 15.32 0.00 36.72 4.46
1998 2057 7.588497 ATTATTTTGGAATGAAGGGACTAGC 57.412 36.000 0.00 0.00 38.49 3.42
1999 2058 4.657814 TTTTGGAATGAAGGGACTAGCT 57.342 40.909 0.00 0.00 38.49 3.32
2000 2059 3.634397 TTGGAATGAAGGGACTAGCTG 57.366 47.619 0.00 0.00 38.49 4.24
2001 2060 2.551270 TGGAATGAAGGGACTAGCTGT 58.449 47.619 0.00 0.00 38.49 4.40
2002 2061 2.912956 TGGAATGAAGGGACTAGCTGTT 59.087 45.455 0.00 0.00 38.49 3.16
2003 2062 4.101114 TGGAATGAAGGGACTAGCTGTTA 58.899 43.478 0.00 0.00 38.49 2.41
2004 2063 4.534500 TGGAATGAAGGGACTAGCTGTTAA 59.466 41.667 0.00 0.00 38.49 2.01
2005 2064 5.013704 TGGAATGAAGGGACTAGCTGTTAAA 59.986 40.000 0.00 0.00 38.49 1.52
2006 2065 5.944007 GGAATGAAGGGACTAGCTGTTAAAA 59.056 40.000 0.00 0.00 38.49 1.52
2007 2066 6.433093 GGAATGAAGGGACTAGCTGTTAAAAA 59.567 38.462 0.00 0.00 38.49 1.94
2008 2067 7.122799 GGAATGAAGGGACTAGCTGTTAAAAAT 59.877 37.037 0.00 0.00 38.49 1.82
2009 2068 8.422577 AATGAAGGGACTAGCTGTTAAAAATT 57.577 30.769 0.00 0.00 38.49 1.82
2010 2069 9.528489 AATGAAGGGACTAGCTGTTAAAAATTA 57.472 29.630 0.00 0.00 38.49 1.40
2011 2070 9.700831 ATGAAGGGACTAGCTGTTAAAAATTAT 57.299 29.630 0.00 0.00 38.49 1.28
2012 2071 9.528489 TGAAGGGACTAGCTGTTAAAAATTATT 57.472 29.630 0.00 0.00 38.49 1.40
2036 2095 6.940831 ATAGACCTACGAGAAACCTAGAAC 57.059 41.667 0.00 0.00 0.00 3.01
2037 2096 4.920999 AGACCTACGAGAAACCTAGAACT 58.079 43.478 0.00 0.00 0.00 3.01
2038 2097 4.943093 AGACCTACGAGAAACCTAGAACTC 59.057 45.833 0.00 0.00 0.00 3.01
2039 2098 4.015764 ACCTACGAGAAACCTAGAACTCC 58.984 47.826 0.00 0.00 0.00 3.85
2040 2099 4.015084 CCTACGAGAAACCTAGAACTCCA 58.985 47.826 0.00 0.00 0.00 3.86
2041 2100 4.461781 CCTACGAGAAACCTAGAACTCCAA 59.538 45.833 0.00 0.00 0.00 3.53
2042 2101 5.127356 CCTACGAGAAACCTAGAACTCCAAT 59.873 44.000 0.00 0.00 0.00 3.16
2043 2102 5.485209 ACGAGAAACCTAGAACTCCAATT 57.515 39.130 0.00 0.00 0.00 2.32
2044 2103 6.600882 ACGAGAAACCTAGAACTCCAATTA 57.399 37.500 0.00 0.00 0.00 1.40
2045 2104 7.184067 ACGAGAAACCTAGAACTCCAATTAT 57.816 36.000 0.00 0.00 0.00 1.28
2046 2105 7.621796 ACGAGAAACCTAGAACTCCAATTATT 58.378 34.615 0.00 0.00 0.00 1.40
2047 2106 8.101419 ACGAGAAACCTAGAACTCCAATTATTT 58.899 33.333 0.00 0.00 0.00 1.40
2048 2107 8.947115 CGAGAAACCTAGAACTCCAATTATTTT 58.053 33.333 0.00 0.00 0.00 1.82
2082 2141 6.017934 CGGATGGAGTTACTGTATGAAATTGG 60.018 42.308 0.00 0.00 0.00 3.16
2162 2222 0.604578 CTGCCACATCCCCACTTTTG 59.395 55.000 0.00 0.00 0.00 2.44
2270 2330 8.096621 TCCATAATGTCCTTCCAAATAGTACA 57.903 34.615 0.00 0.00 0.00 2.90
2293 2353 4.341235 AGCAGATGACAATAATGCAAGCAT 59.659 37.500 0.86 0.86 39.34 3.79
2398 2458 3.160269 ACAAAATCCTTTCTCAGGGCAG 58.840 45.455 0.00 0.00 44.12 4.85
2482 2542 7.233348 ACCATTCCAAAATCTGTACAGTTTGAT 59.767 33.333 27.82 17.42 0.00 2.57
2577 2637 1.338107 TCAACATCTGGTCAGGACGT 58.662 50.000 0.00 0.00 0.00 4.34
2647 2707 4.240888 ACTCAGTTGTCGATCATGAAGTG 58.759 43.478 0.00 0.00 0.00 3.16
2686 2746 6.825721 ACGAGCAGAAAGAAATGAATTATCCT 59.174 34.615 0.00 0.00 0.00 3.24
2733 2793 6.748658 CGTGATGAACAAATACAATGCTCATT 59.251 34.615 0.00 0.00 34.63 2.57
2740 2800 8.524870 AACAAATACAATGCTCATTTTCTGAC 57.475 30.769 0.00 0.00 0.00 3.51
2832 2892 5.758296 ACATGCGATCAAACTATTCCGTTAT 59.242 36.000 0.00 0.00 0.00 1.89
2833 2893 6.260050 ACATGCGATCAAACTATTCCGTTATT 59.740 34.615 0.00 0.00 0.00 1.40
2900 2961 8.197439 AGAAGGTAAAAGTGTTTCCTTTTCATG 58.803 33.333 5.50 0.00 42.20 3.07
2901 2962 7.654022 AGGTAAAAGTGTTTCCTTTTCATGA 57.346 32.000 2.45 0.00 42.20 3.07
3060 3121 5.133322 TCCTCCTGCAAATCTCAATATTCCT 59.867 40.000 0.00 0.00 0.00 3.36
3168 3235 9.586435 CCTAATACATTGTTCTCCCAAAAATTC 57.414 33.333 0.00 0.00 0.00 2.17
3196 3263 6.984474 TCCCTCTATAAAGAAATGTAAGTGCG 59.016 38.462 0.00 0.00 0.00 5.34
3866 3951 4.265320 GTGTTACAGTTGCACTTTGCTTTC 59.735 41.667 0.00 0.00 45.31 2.62
4300 4402 0.392193 AACAGGCAGAGGAGAATGCG 60.392 55.000 0.00 0.00 43.49 4.73
4362 4464 6.406370 CCATATTATTCCTAGCCGTGATTCA 58.594 40.000 0.00 0.00 0.00 2.57
4558 4661 4.460382 GTGGAGAAATGCTTGGAATCTTCA 59.540 41.667 0.00 0.00 0.00 3.02
4572 4675 3.747099 ATCTTCAGCAACATTACGCAC 57.253 42.857 0.00 0.00 0.00 5.34
4579 4682 1.472480 GCAACATTACGCACCTCCAAT 59.528 47.619 0.00 0.00 0.00 3.16
4617 4720 1.573829 TTCCTGCCGATGAACAACGC 61.574 55.000 0.00 0.00 0.00 4.84
4734 4837 1.746615 CCCGGTCCAATCAGCACAG 60.747 63.158 0.00 0.00 0.00 3.66
4753 4856 5.813672 GCACAGTCCGGACTAATTTATGTTA 59.186 40.000 35.80 0.00 40.20 2.41
4761 4864 6.072673 CCGGACTAATTTATGTTAATGAGCCC 60.073 42.308 0.00 0.00 0.00 5.19
4762 4865 6.347402 CGGACTAATTTATGTTAATGAGCCCG 60.347 42.308 0.00 0.00 36.21 6.13
4763 4866 6.072673 GGACTAATTTATGTTAATGAGCCCGG 60.073 42.308 0.00 0.00 0.00 5.73
4764 4867 6.362248 ACTAATTTATGTTAATGAGCCCGGT 58.638 36.000 0.00 0.00 0.00 5.28
4765 4868 5.767816 AATTTATGTTAATGAGCCCGGTC 57.232 39.130 0.00 0.00 0.00 4.79
4766 4869 2.922740 TATGTTAATGAGCCCGGTCC 57.077 50.000 0.00 0.00 0.00 4.46
4768 4871 0.693622 TGTTAATGAGCCCGGTCCAA 59.306 50.000 0.00 0.00 0.00 3.53
4947 5059 1.028130 CTAGCTCTGTCAGATCGGCA 58.972 55.000 13.35 1.71 0.00 5.69
5004 5116 4.151689 TCGAATTCAGGTTTCAATGACGAC 59.848 41.667 6.22 0.00 0.00 4.34
5034 5146 1.079127 CGTTGCTTCTCCCCGTGAT 60.079 57.895 0.00 0.00 0.00 3.06
5040 5152 3.541632 TGCTTCTCCCCGTGATAATTTC 58.458 45.455 0.00 0.00 0.00 2.17
5044 5156 2.169769 TCTCCCCGTGATAATTTCGCTT 59.830 45.455 0.00 0.00 32.41 4.68
5279 5396 1.640917 TTTCCTCTGTAGCCGGAACT 58.359 50.000 5.05 0.00 36.61 3.01
5314 5431 4.524328 GGGTCATCAGAAAAGGTGACAAAT 59.476 41.667 9.28 0.00 42.00 2.32
5350 5467 6.980978 AGTGATATTATTTGACAGTCACTCCG 59.019 38.462 1.52 0.00 40.33 4.63
5470 5655 3.428452 CCATGTGCCTTGTAGCTCAAATG 60.428 47.826 0.00 0.00 39.46 2.32
5477 5662 4.142600 GCCTTGTAGCTCAAATGTCGAAAT 60.143 41.667 0.00 0.00 35.48 2.17
5486 5671 5.560966 TCAAATGTCGAAATAGGCTTTCC 57.439 39.130 0.00 0.00 0.00 3.13
5487 5672 5.253330 TCAAATGTCGAAATAGGCTTTCCT 58.747 37.500 0.00 0.00 46.57 3.36
5488 5673 5.710099 TCAAATGTCGAAATAGGCTTTCCTT 59.290 36.000 0.00 0.00 40.66 3.36
5490 5675 3.606687 TGTCGAAATAGGCTTTCCTTCC 58.393 45.455 0.00 0.00 40.66 3.46
5493 5678 1.676529 GAAATAGGCTTTCCTTCCGCC 59.323 52.381 0.00 0.00 40.66 6.13
5500 5685 1.883926 GCTTTCCTTCCGCCTTGTAAA 59.116 47.619 0.00 0.00 0.00 2.01
5501 5686 2.492088 GCTTTCCTTCCGCCTTGTAAAT 59.508 45.455 0.00 0.00 0.00 1.40
5505 5690 5.890424 TTCCTTCCGCCTTGTAAATAAAG 57.110 39.130 0.00 0.00 0.00 1.85
5523 5708 7.844493 AATAAAGCAACCATCACATCCATAT 57.156 32.000 0.00 0.00 0.00 1.78
5526 5711 6.639632 AAGCAACCATCACATCCATATAAC 57.360 37.500 0.00 0.00 0.00 1.89
5538 5724 6.535150 CACATCCATATAACGAGTTCAAGTGT 59.465 38.462 0.00 0.00 0.00 3.55
5540 5726 8.421784 ACATCCATATAACGAGTTCAAGTGTAT 58.578 33.333 0.00 0.00 0.00 2.29
5561 5747 9.360093 GTGTATCGAGATAAAATATTCTCTGGG 57.640 37.037 0.00 0.00 36.94 4.45
5562 5748 9.309224 TGTATCGAGATAAAATATTCTCTGGGA 57.691 33.333 0.00 0.00 36.94 4.37
5571 5757 7.992754 AAAATATTCTCTGGGATATCAGCAC 57.007 36.000 4.83 0.00 34.91 4.40
5572 5758 6.692849 AATATTCTCTGGGATATCAGCACA 57.307 37.500 4.83 0.00 34.91 4.57
5573 5759 6.692849 ATATTCTCTGGGATATCAGCACAA 57.307 37.500 4.83 0.00 34.91 3.33
5574 5760 4.842531 TTCTCTGGGATATCAGCACAAA 57.157 40.909 4.83 0.00 34.91 2.83
5575 5761 4.142609 TCTCTGGGATATCAGCACAAAC 57.857 45.455 4.83 0.00 34.91 2.93
5585 5783 1.675483 TCAGCACAAACACGCAAGAAT 59.325 42.857 0.00 0.00 43.62 2.40
5588 5786 3.306703 CAGCACAAACACGCAAGAATTTT 59.693 39.130 0.00 0.00 43.62 1.82
5598 5796 3.380004 ACGCAAGAATTTTGAAGGTGTCA 59.620 39.130 5.03 0.00 43.62 3.58
5599 5797 3.976942 CGCAAGAATTTTGAAGGTGTCAG 59.023 43.478 5.03 0.00 37.18 3.51
5600 5798 4.261155 CGCAAGAATTTTGAAGGTGTCAGA 60.261 41.667 5.03 0.00 37.18 3.27
5601 5799 5.563475 CGCAAGAATTTTGAAGGTGTCAGAT 60.563 40.000 5.03 0.00 37.18 2.90
5602 5800 5.632347 GCAAGAATTTTGAAGGTGTCAGATG 59.368 40.000 5.03 0.00 37.61 2.90
5603 5801 5.382618 AGAATTTTGAAGGTGTCAGATGC 57.617 39.130 0.00 0.00 37.61 3.91
5604 5802 4.219288 AGAATTTTGAAGGTGTCAGATGCC 59.781 41.667 0.00 0.00 37.61 4.40
5605 5803 1.909700 TTTGAAGGTGTCAGATGCCC 58.090 50.000 0.00 0.00 37.61 5.36
5651 5853 5.241949 ACGCTCTAGTGTCTCCTTAATATGG 59.758 44.000 0.00 0.00 32.60 2.74
5661 5863 9.793259 GTGTCTCCTTAATATGGATTATTTGGA 57.207 33.333 0.00 0.00 33.96 3.53
5670 5872 7.745620 ATATGGATTATTTGGAGTTTCCGAC 57.254 36.000 0.00 0.00 40.17 4.79
5671 5873 5.174037 TGGATTATTTGGAGTTTCCGACT 57.826 39.130 0.00 0.00 40.17 4.18
5699 6673 7.649533 ATTGATATGCAATCTTGAAGTTCCA 57.350 32.000 0.00 0.00 43.64 3.53
5706 6680 4.340381 GCAATCTTGAAGTTCCATGCCTAT 59.660 41.667 0.00 0.00 0.00 2.57
5797 6779 1.226717 GGTGATCGCAGAGGACGAC 60.227 63.158 8.82 0.00 43.63 4.34
5804 6786 0.586802 CGCAGAGGACGACGATATGA 59.413 55.000 0.00 0.00 0.00 2.15
5829 6811 2.114670 AAATCTGCCATGTCCCGCG 61.115 57.895 0.00 0.00 0.00 6.46
5849 6831 2.360767 GCCAAATCTGCCATGCCCA 61.361 57.895 0.00 0.00 0.00 5.36
5850 6832 1.692173 GCCAAATCTGCCATGCCCAT 61.692 55.000 0.00 0.00 0.00 4.00
5852 6834 2.040939 CCAAATCTGCCATGCCCATAA 58.959 47.619 0.00 0.00 0.00 1.90
5853 6835 2.435069 CCAAATCTGCCATGCCCATAAA 59.565 45.455 0.00 0.00 0.00 1.40
5861 7094 3.205338 GCCATGCCCATAAATTTTGGTC 58.795 45.455 14.39 6.23 31.99 4.02
5893 7126 0.544357 TGTGGATCCCGACTTGGAGT 60.544 55.000 9.90 0.00 42.00 3.85
5921 7154 1.876322 AGCGAAGATGATGGCTAAGC 58.124 50.000 0.00 0.00 33.19 3.09
5948 7181 8.610896 GGACATGAACAAAGAGAAGAGATTATG 58.389 37.037 0.00 0.00 0.00 1.90
5970 7203 3.430236 GGCACAACAACAAAACCTAAGCT 60.430 43.478 0.00 0.00 0.00 3.74
5983 7216 3.329929 CCTAAGCTTAGGGTCGTTGTT 57.670 47.619 35.86 0.00 45.29 2.83
5985 7218 3.435671 CCTAAGCTTAGGGTCGTTGTTTG 59.564 47.826 35.86 12.71 45.29 2.93
5993 7226 1.336755 GGGTCGTTGTTTGCAGACATT 59.663 47.619 11.30 0.00 35.49 2.71
6045 7278 5.473162 TGGGCATATTGTTGTATCATACTGC 59.527 40.000 0.00 0.00 0.00 4.40
6046 7279 5.707298 GGGCATATTGTTGTATCATACTGCT 59.293 40.000 0.00 0.00 0.00 4.24
6055 7288 7.210174 TGTTGTATCATACTGCTGGAATACTC 58.790 38.462 0.00 0.00 0.00 2.59
6061 7294 1.912043 ACTGCTGGAATACTCAAGGCT 59.088 47.619 0.00 0.00 0.00 4.58
6073 7306 3.969802 AAGGCTGCAAGTGCGTGC 61.970 61.111 0.50 11.16 45.83 5.34
6080 7313 2.353839 CAAGTGCGTGCTGTTGGC 60.354 61.111 0.00 0.00 42.22 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.892284 ACTCGCTTCTCTAGATGGAGAA 58.108 45.455 8.18 8.18 46.22 2.87
4 5 3.569194 ACTCGCTTCTCTAGATGGAGA 57.431 47.619 0.00 0.00 40.16 3.71
5 6 4.023536 GGTAACTCGCTTCTCTAGATGGAG 60.024 50.000 0.00 0.00 34.88 3.86
6 7 3.884091 GGTAACTCGCTTCTCTAGATGGA 59.116 47.826 0.00 0.00 0.00 3.41
7 8 3.632604 TGGTAACTCGCTTCTCTAGATGG 59.367 47.826 0.00 0.00 37.61 3.51
8 9 4.336993 ACTGGTAACTCGCTTCTCTAGATG 59.663 45.833 0.00 0.00 37.61 2.90
9 10 4.336993 CACTGGTAACTCGCTTCTCTAGAT 59.663 45.833 0.00 0.00 37.61 1.98
10 11 3.690139 CACTGGTAACTCGCTTCTCTAGA 59.310 47.826 0.00 0.00 37.61 2.43
11 12 3.732471 GCACTGGTAACTCGCTTCTCTAG 60.732 52.174 0.00 0.00 37.61 2.43
12 13 2.163815 GCACTGGTAACTCGCTTCTCTA 59.836 50.000 0.00 0.00 37.61 2.43
13 14 1.067495 GCACTGGTAACTCGCTTCTCT 60.067 52.381 0.00 0.00 37.61 3.10
14 15 1.336887 TGCACTGGTAACTCGCTTCTC 60.337 52.381 0.00 0.00 37.61 2.87
15 16 0.679505 TGCACTGGTAACTCGCTTCT 59.320 50.000 0.00 0.00 37.61 2.85
16 17 1.071605 CTGCACTGGTAACTCGCTTC 58.928 55.000 0.00 0.00 37.61 3.86
17 18 0.679505 TCTGCACTGGTAACTCGCTT 59.320 50.000 0.00 0.00 37.61 4.68
18 19 0.898320 ATCTGCACTGGTAACTCGCT 59.102 50.000 0.00 0.00 37.61 4.93
19 20 1.281899 GATCTGCACTGGTAACTCGC 58.718 55.000 0.00 0.00 37.61 5.03
20 21 1.132453 TCGATCTGCACTGGTAACTCG 59.868 52.381 0.00 0.00 37.61 4.18
21 22 2.094700 TGTCGATCTGCACTGGTAACTC 60.095 50.000 0.00 0.00 37.61 3.01
22 23 1.893137 TGTCGATCTGCACTGGTAACT 59.107 47.619 0.00 0.00 37.61 2.24
23 24 2.363788 TGTCGATCTGCACTGGTAAC 57.636 50.000 0.00 0.00 0.00 2.50
24 25 2.418609 CCATGTCGATCTGCACTGGTAA 60.419 50.000 0.00 0.00 0.00 2.85
25 26 1.136891 CCATGTCGATCTGCACTGGTA 59.863 52.381 0.00 0.00 0.00 3.25
26 27 0.107993 CCATGTCGATCTGCACTGGT 60.108 55.000 0.00 0.00 0.00 4.00
27 28 0.176449 TCCATGTCGATCTGCACTGG 59.824 55.000 0.00 1.03 0.00 4.00
28 29 2.235845 ATCCATGTCGATCTGCACTG 57.764 50.000 0.00 0.00 0.00 3.66
29 30 2.433604 AGAATCCATGTCGATCTGCACT 59.566 45.455 0.00 0.00 0.00 4.40
30 31 2.831333 AGAATCCATGTCGATCTGCAC 58.169 47.619 0.00 0.00 0.00 4.57
31 32 4.879197 ATAGAATCCATGTCGATCTGCA 57.121 40.909 0.00 0.00 0.00 4.41
32 33 7.675870 GCAATTATAGAATCCATGTCGATCTGC 60.676 40.741 0.00 0.00 0.00 4.26
33 34 7.332678 TGCAATTATAGAATCCATGTCGATCTG 59.667 37.037 0.00 0.00 0.00 2.90
34 35 7.389232 TGCAATTATAGAATCCATGTCGATCT 58.611 34.615 0.00 0.00 0.00 2.75
35 36 7.332926 ACTGCAATTATAGAATCCATGTCGATC 59.667 37.037 0.00 0.00 0.00 3.69
36 37 7.118825 CACTGCAATTATAGAATCCATGTCGAT 59.881 37.037 0.00 0.00 0.00 3.59
37 38 6.424812 CACTGCAATTATAGAATCCATGTCGA 59.575 38.462 0.00 0.00 0.00 4.20
38 39 6.424812 TCACTGCAATTATAGAATCCATGTCG 59.575 38.462 0.00 0.00 0.00 4.35
39 40 7.734924 TCACTGCAATTATAGAATCCATGTC 57.265 36.000 0.00 0.00 0.00 3.06
40 41 8.523915 TTTCACTGCAATTATAGAATCCATGT 57.476 30.769 0.00 0.00 0.00 3.21
41 42 9.976511 AATTTCACTGCAATTATAGAATCCATG 57.023 29.630 0.00 0.00 0.00 3.66
42 43 9.976511 CAATTTCACTGCAATTATAGAATCCAT 57.023 29.630 0.00 0.00 0.00 3.41
43 44 9.187996 TCAATTTCACTGCAATTATAGAATCCA 57.812 29.630 0.00 0.00 0.00 3.41
47 48 9.187996 TGGATCAATTTCACTGCAATTATAGAA 57.812 29.630 0.00 0.00 0.00 2.10
48 49 8.750515 TGGATCAATTTCACTGCAATTATAGA 57.249 30.769 0.00 0.00 0.00 1.98
49 50 8.080417 CCTGGATCAATTTCACTGCAATTATAG 58.920 37.037 0.00 0.00 0.00 1.31
50 51 7.470424 GCCTGGATCAATTTCACTGCAATTATA 60.470 37.037 0.00 0.00 0.00 0.98
51 52 6.684613 GCCTGGATCAATTTCACTGCAATTAT 60.685 38.462 0.00 0.00 0.00 1.28
52 53 5.394443 GCCTGGATCAATTTCACTGCAATTA 60.394 40.000 0.00 0.00 0.00 1.40
53 54 4.622220 GCCTGGATCAATTTCACTGCAATT 60.622 41.667 0.00 0.00 0.00 2.32
54 55 3.118884 GCCTGGATCAATTTCACTGCAAT 60.119 43.478 0.00 0.00 0.00 3.56
55 56 2.231964 GCCTGGATCAATTTCACTGCAA 59.768 45.455 0.00 0.00 0.00 4.08
56 57 1.820519 GCCTGGATCAATTTCACTGCA 59.179 47.619 0.00 0.00 0.00 4.41
57 58 2.097825 AGCCTGGATCAATTTCACTGC 58.902 47.619 0.00 0.00 0.00 4.40
58 59 3.760151 TGAAGCCTGGATCAATTTCACTG 59.240 43.478 0.00 0.00 0.00 3.66
59 60 3.760684 GTGAAGCCTGGATCAATTTCACT 59.239 43.478 0.00 0.00 40.53 3.41
60 61 3.507233 TGTGAAGCCTGGATCAATTTCAC 59.493 43.478 15.16 15.16 42.72 3.18
61 62 3.760151 CTGTGAAGCCTGGATCAATTTCA 59.240 43.478 0.00 0.00 0.00 2.69
62 63 3.129988 CCTGTGAAGCCTGGATCAATTTC 59.870 47.826 0.00 0.00 0.00 2.17
63 64 3.094572 CCTGTGAAGCCTGGATCAATTT 58.905 45.455 0.00 0.00 0.00 1.82
64 65 2.042162 ACCTGTGAAGCCTGGATCAATT 59.958 45.455 0.00 0.00 0.00 2.32
65 66 1.637553 ACCTGTGAAGCCTGGATCAAT 59.362 47.619 0.00 0.00 0.00 2.57
66 67 1.067295 ACCTGTGAAGCCTGGATCAA 58.933 50.000 0.00 0.00 0.00 2.57
67 68 1.067295 AACCTGTGAAGCCTGGATCA 58.933 50.000 0.00 0.00 0.00 2.92
68 69 1.003580 TCAACCTGTGAAGCCTGGATC 59.996 52.381 0.00 0.00 31.51 3.36
69 70 1.067295 TCAACCTGTGAAGCCTGGAT 58.933 50.000 0.00 0.00 31.51 3.41
70 71 0.108585 GTCAACCTGTGAAGCCTGGA 59.891 55.000 0.00 0.00 38.23 3.86
71 72 0.179020 TGTCAACCTGTGAAGCCTGG 60.179 55.000 0.00 0.00 38.23 4.45
72 73 1.202687 TCTGTCAACCTGTGAAGCCTG 60.203 52.381 0.00 0.00 38.23 4.85
73 74 1.131638 TCTGTCAACCTGTGAAGCCT 58.868 50.000 0.00 0.00 38.23 4.58
74 75 2.079925 GATCTGTCAACCTGTGAAGCC 58.920 52.381 0.00 0.00 38.23 4.35
75 76 1.728971 CGATCTGTCAACCTGTGAAGC 59.271 52.381 0.00 0.00 38.23 3.86
76 77 2.289072 ACCGATCTGTCAACCTGTGAAG 60.289 50.000 0.00 0.00 38.23 3.02
77 78 1.691976 ACCGATCTGTCAACCTGTGAA 59.308 47.619 0.00 0.00 38.23 3.18
78 79 1.338107 ACCGATCTGTCAACCTGTGA 58.662 50.000 0.00 0.00 0.00 3.58
79 80 3.526931 ATACCGATCTGTCAACCTGTG 57.473 47.619 0.00 0.00 0.00 3.66
80 81 5.507482 CGAATATACCGATCTGTCAACCTGT 60.507 44.000 0.00 0.00 0.00 4.00
81 82 4.917998 CGAATATACCGATCTGTCAACCTG 59.082 45.833 0.00 0.00 0.00 4.00
82 83 4.583489 ACGAATATACCGATCTGTCAACCT 59.417 41.667 0.00 0.00 0.00 3.50
83 84 4.868067 ACGAATATACCGATCTGTCAACC 58.132 43.478 0.00 0.00 0.00 3.77
84 85 4.916249 GGACGAATATACCGATCTGTCAAC 59.084 45.833 0.00 0.00 0.00 3.18
85 86 4.581409 TGGACGAATATACCGATCTGTCAA 59.419 41.667 0.00 0.00 0.00 3.18
86 87 4.139038 TGGACGAATATACCGATCTGTCA 58.861 43.478 0.00 0.00 0.00 3.58
87 88 4.761235 TGGACGAATATACCGATCTGTC 57.239 45.455 0.00 0.00 0.00 3.51
88 89 4.765339 TGATGGACGAATATACCGATCTGT 59.235 41.667 4.69 0.00 0.00 3.41
89 90 5.310720 TGATGGACGAATATACCGATCTG 57.689 43.478 4.69 0.00 0.00 2.90
90 91 5.652452 TGATGATGGACGAATATACCGATCT 59.348 40.000 4.69 0.00 0.00 2.75
91 92 5.891451 TGATGATGGACGAATATACCGATC 58.109 41.667 4.69 0.00 0.00 3.69
92 93 5.914898 TGATGATGGACGAATATACCGAT 57.085 39.130 4.69 0.00 0.00 4.18
93 94 5.336451 CCTTGATGATGGACGAATATACCGA 60.336 44.000 4.69 0.00 0.00 4.69
94 95 4.864806 CCTTGATGATGGACGAATATACCG 59.135 45.833 0.00 0.00 0.00 4.02
95 96 6.037786 TCCTTGATGATGGACGAATATACC 57.962 41.667 0.00 0.00 0.00 2.73
96 97 6.925211 TCTCCTTGATGATGGACGAATATAC 58.075 40.000 0.00 0.00 0.00 1.47
97 98 7.724490 ATCTCCTTGATGATGGACGAATATA 57.276 36.000 0.00 0.00 33.43 0.86
98 99 6.617782 ATCTCCTTGATGATGGACGAATAT 57.382 37.500 0.00 0.00 33.43 1.28
99 100 6.425210 AATCTCCTTGATGATGGACGAATA 57.575 37.500 0.00 0.00 35.21 1.75
100 101 4.970860 ATCTCCTTGATGATGGACGAAT 57.029 40.909 0.00 0.00 33.43 3.34
101 102 4.760530 AATCTCCTTGATGATGGACGAA 57.239 40.909 0.00 0.00 35.21 3.85
102 103 5.140454 TCTAATCTCCTTGATGATGGACGA 58.860 41.667 0.00 0.00 35.21 4.20
103 104 5.459536 TCTAATCTCCTTGATGATGGACG 57.540 43.478 0.00 0.00 35.21 4.79
104 105 8.980596 AGATATCTAATCTCCTTGATGATGGAC 58.019 37.037 2.53 0.00 35.21 4.02
105 106 9.558133 AAGATATCTAATCTCCTTGATGATGGA 57.442 33.333 5.46 0.00 35.21 3.41
132 133 9.871238 AGTAATACAATTTTCACGTAGAGACAT 57.129 29.630 0.00 0.00 0.00 3.06
133 134 9.350357 GAGTAATACAATTTTCACGTAGAGACA 57.650 33.333 0.00 0.00 0.00 3.41
134 135 9.350357 TGAGTAATACAATTTTCACGTAGAGAC 57.650 33.333 0.00 0.00 0.00 3.36
137 138 9.647797 ACATGAGTAATACAATTTTCACGTAGA 57.352 29.630 0.00 0.00 0.00 2.59
148 149 9.712305 GGCTATGACTTACATGAGTAATACAAT 57.288 33.333 0.00 0.00 39.36 2.71
149 150 8.700973 TGGCTATGACTTACATGAGTAATACAA 58.299 33.333 0.00 0.00 39.36 2.41
150 151 8.245195 TGGCTATGACTTACATGAGTAATACA 57.755 34.615 0.00 0.00 39.36 2.29
151 152 9.542462 TTTGGCTATGACTTACATGAGTAATAC 57.458 33.333 0.00 0.00 39.36 1.89
153 154 9.632638 ATTTTGGCTATGACTTACATGAGTAAT 57.367 29.630 0.00 0.00 39.36 1.89
156 157 9.461312 TTTATTTTGGCTATGACTTACATGAGT 57.539 29.630 0.00 0.00 39.77 3.41
157 158 9.941664 CTTTATTTTGGCTATGACTTACATGAG 57.058 33.333 0.00 0.00 39.77 2.90
158 159 9.461312 ACTTTATTTTGGCTATGACTTACATGA 57.539 29.630 0.00 0.00 39.77 3.07
164 165 9.515226 TCACTAACTTTATTTTGGCTATGACTT 57.485 29.630 0.00 0.00 0.00 3.01
165 166 9.686683 ATCACTAACTTTATTTTGGCTATGACT 57.313 29.630 0.00 0.00 0.00 3.41
168 169 9.884465 GCTATCACTAACTTTATTTTGGCTATG 57.116 33.333 0.00 0.00 0.00 2.23
169 170 9.853177 AGCTATCACTAACTTTATTTTGGCTAT 57.147 29.630 0.00 0.00 0.00 2.97
170 171 9.681062 AAGCTATCACTAACTTTATTTTGGCTA 57.319 29.630 0.00 0.00 0.00 3.93
171 172 8.581253 AAGCTATCACTAACTTTATTTTGGCT 57.419 30.769 0.00 0.00 0.00 4.75
172 173 9.076596 CAAAGCTATCACTAACTTTATTTTGGC 57.923 33.333 0.00 0.00 31.40 4.52
173 174 9.076596 GCAAAGCTATCACTAACTTTATTTTGG 57.923 33.333 0.00 0.00 31.40 3.28
174 175 9.846248 AGCAAAGCTATCACTAACTTTATTTTG 57.154 29.630 0.00 0.00 36.99 2.44
181 182 9.846248 CAAATTTAGCAAAGCTATCACTAACTT 57.154 29.630 0.00 0.00 41.01 2.66
182 183 9.014297 ACAAATTTAGCAAAGCTATCACTAACT 57.986 29.630 0.00 0.00 41.01 2.24
183 184 9.626045 AACAAATTTAGCAAAGCTATCACTAAC 57.374 29.630 0.00 0.00 41.01 2.34
184 185 9.840427 GAACAAATTTAGCAAAGCTATCACTAA 57.160 29.630 0.00 0.00 41.01 2.24
185 186 8.175069 CGAACAAATTTAGCAAAGCTATCACTA 58.825 33.333 0.00 0.00 41.01 2.74
186 187 7.023575 CGAACAAATTTAGCAAAGCTATCACT 58.976 34.615 0.00 0.00 41.01 3.41
187 188 6.801862 ACGAACAAATTTAGCAAAGCTATCAC 59.198 34.615 0.00 0.00 41.01 3.06
188 189 6.908825 ACGAACAAATTTAGCAAAGCTATCA 58.091 32.000 0.00 0.00 41.01 2.15
189 190 8.175716 ACTACGAACAAATTTAGCAAAGCTATC 58.824 33.333 0.00 0.00 41.01 2.08
190 191 7.962918 CACTACGAACAAATTTAGCAAAGCTAT 59.037 33.333 0.00 0.00 41.01 2.97
191 192 7.171848 TCACTACGAACAAATTTAGCAAAGCTA 59.828 33.333 0.00 0.00 40.44 3.32
192 193 6.017440 TCACTACGAACAAATTTAGCAAAGCT 60.017 34.615 0.00 0.00 43.41 3.74
193 194 6.140110 TCACTACGAACAAATTTAGCAAAGC 58.860 36.000 0.00 0.00 0.00 3.51
194 195 6.797033 CCTCACTACGAACAAATTTAGCAAAG 59.203 38.462 0.00 0.00 0.00 2.77
195 196 6.483974 TCCTCACTACGAACAAATTTAGCAAA 59.516 34.615 0.00 0.00 0.00 3.68
196 197 5.992829 TCCTCACTACGAACAAATTTAGCAA 59.007 36.000 0.00 0.00 0.00 3.91
197 198 5.543714 TCCTCACTACGAACAAATTTAGCA 58.456 37.500 0.00 0.00 0.00 3.49
198 199 6.663944 ATCCTCACTACGAACAAATTTAGC 57.336 37.500 0.00 0.00 0.00 3.09
199 200 9.582431 TTCTATCCTCACTACGAACAAATTTAG 57.418 33.333 0.00 0.00 0.00 1.85
200 201 9.362539 GTTCTATCCTCACTACGAACAAATTTA 57.637 33.333 0.00 0.00 33.05 1.40
201 202 7.333672 GGTTCTATCCTCACTACGAACAAATTT 59.666 37.037 0.00 0.00 34.13 1.82
202 203 6.817140 GGTTCTATCCTCACTACGAACAAATT 59.183 38.462 0.00 0.00 34.13 1.82
203 204 6.070995 TGGTTCTATCCTCACTACGAACAAAT 60.071 38.462 0.00 0.00 34.13 2.32
204 205 5.244402 TGGTTCTATCCTCACTACGAACAAA 59.756 40.000 0.00 0.00 34.13 2.83
205 206 4.768448 TGGTTCTATCCTCACTACGAACAA 59.232 41.667 0.00 0.00 34.13 2.83
206 207 4.338012 TGGTTCTATCCTCACTACGAACA 58.662 43.478 0.00 0.00 34.13 3.18
207 208 4.978083 TGGTTCTATCCTCACTACGAAC 57.022 45.455 0.00 0.00 0.00 3.95
208 209 5.067413 GTCATGGTTCTATCCTCACTACGAA 59.933 44.000 0.00 0.00 0.00 3.85
209 210 4.579340 GTCATGGTTCTATCCTCACTACGA 59.421 45.833 0.00 0.00 0.00 3.43
210 211 4.580995 AGTCATGGTTCTATCCTCACTACG 59.419 45.833 0.00 0.00 0.00 3.51
211 212 6.276847 CAAGTCATGGTTCTATCCTCACTAC 58.723 44.000 0.00 0.00 0.00 2.73
212 213 5.363868 CCAAGTCATGGTTCTATCCTCACTA 59.636 44.000 0.00 0.00 44.85 2.74
213 214 4.163078 CCAAGTCATGGTTCTATCCTCACT 59.837 45.833 0.00 0.00 44.85 3.41
214 215 4.446371 CCAAGTCATGGTTCTATCCTCAC 58.554 47.826 0.00 0.00 44.85 3.51
215 216 4.760530 CCAAGTCATGGTTCTATCCTCA 57.239 45.455 0.00 0.00 44.85 3.86
227 228 6.287589 AGACTAGAACCTAACCAAGTCATG 57.712 41.667 0.00 0.00 36.63 3.07
228 229 6.070710 GGAAGACTAGAACCTAACCAAGTCAT 60.071 42.308 0.00 0.00 36.63 3.06
229 230 5.245526 GGAAGACTAGAACCTAACCAAGTCA 59.754 44.000 0.00 0.00 36.63 3.41
230 231 5.481122 AGGAAGACTAGAACCTAACCAAGTC 59.519 44.000 0.00 0.00 34.85 3.01
231 232 5.246429 CAGGAAGACTAGAACCTAACCAAGT 59.754 44.000 0.00 0.00 0.00 3.16
232 233 5.480772 TCAGGAAGACTAGAACCTAACCAAG 59.519 44.000 0.00 0.00 0.00 3.61
233 234 5.399991 TCAGGAAGACTAGAACCTAACCAA 58.600 41.667 0.00 0.00 0.00 3.67
234 235 5.006896 TCAGGAAGACTAGAACCTAACCA 57.993 43.478 0.00 0.00 0.00 3.67
235 236 4.403113 CCTCAGGAAGACTAGAACCTAACC 59.597 50.000 0.00 0.00 0.00 2.85
236 237 4.142116 GCCTCAGGAAGACTAGAACCTAAC 60.142 50.000 0.00 0.00 0.00 2.34
237 238 4.024670 GCCTCAGGAAGACTAGAACCTAA 58.975 47.826 0.00 0.00 0.00 2.69
238 239 3.269906 AGCCTCAGGAAGACTAGAACCTA 59.730 47.826 0.00 0.00 0.00 3.08
239 240 2.043801 AGCCTCAGGAAGACTAGAACCT 59.956 50.000 0.00 0.00 0.00 3.50
240 241 2.462723 AGCCTCAGGAAGACTAGAACC 58.537 52.381 0.00 0.00 0.00 3.62
241 242 4.249661 CAAAGCCTCAGGAAGACTAGAAC 58.750 47.826 0.00 0.00 0.00 3.01
242 243 3.261897 CCAAAGCCTCAGGAAGACTAGAA 59.738 47.826 0.00 0.00 0.00 2.10
243 244 2.834549 CCAAAGCCTCAGGAAGACTAGA 59.165 50.000 0.00 0.00 0.00 2.43
244 245 2.834549 TCCAAAGCCTCAGGAAGACTAG 59.165 50.000 0.00 0.00 0.00 2.57
245 246 2.902608 TCCAAAGCCTCAGGAAGACTA 58.097 47.619 0.00 0.00 0.00 2.59
246 247 1.734655 TCCAAAGCCTCAGGAAGACT 58.265 50.000 0.00 0.00 0.00 3.24
247 248 2.155279 GTTCCAAAGCCTCAGGAAGAC 58.845 52.381 0.00 0.00 41.74 3.01
248 249 2.057922 AGTTCCAAAGCCTCAGGAAGA 58.942 47.619 0.00 0.00 41.74 2.87
249 250 2.575805 AGTTCCAAAGCCTCAGGAAG 57.424 50.000 0.00 0.00 41.74 3.46
250 251 2.290323 GCTAGTTCCAAAGCCTCAGGAA 60.290 50.000 0.00 0.00 39.01 3.36
251 252 1.279271 GCTAGTTCCAAAGCCTCAGGA 59.721 52.381 0.00 0.00 32.40 3.86
252 253 1.280421 AGCTAGTTCCAAAGCCTCAGG 59.720 52.381 0.00 0.00 39.64 3.86
253 254 2.354259 CAGCTAGTTCCAAAGCCTCAG 58.646 52.381 0.00 0.00 39.64 3.35
254 255 1.611673 GCAGCTAGTTCCAAAGCCTCA 60.612 52.381 0.00 0.00 39.64 3.86
255 256 1.090728 GCAGCTAGTTCCAAAGCCTC 58.909 55.000 0.00 0.00 39.64 4.70
256 257 0.674895 CGCAGCTAGTTCCAAAGCCT 60.675 55.000 0.00 0.00 39.64 4.58
257 258 0.673644 TCGCAGCTAGTTCCAAAGCC 60.674 55.000 0.00 0.00 39.64 4.35
258 259 1.373570 ATCGCAGCTAGTTCCAAAGC 58.626 50.000 0.00 0.00 39.08 3.51
259 260 3.002791 TCAATCGCAGCTAGTTCCAAAG 58.997 45.455 0.00 0.00 0.00 2.77
260 261 3.052455 TCAATCGCAGCTAGTTCCAAA 57.948 42.857 0.00 0.00 0.00 3.28
261 262 2.760634 TCAATCGCAGCTAGTTCCAA 57.239 45.000 0.00 0.00 0.00 3.53
262 263 2.938451 CAATCAATCGCAGCTAGTTCCA 59.062 45.455 0.00 0.00 0.00 3.53
263 264 2.939103 ACAATCAATCGCAGCTAGTTCC 59.061 45.455 0.00 0.00 0.00 3.62
264 265 5.277058 CCTTACAATCAATCGCAGCTAGTTC 60.277 44.000 0.00 0.00 0.00 3.01
265 266 4.572389 CCTTACAATCAATCGCAGCTAGTT 59.428 41.667 0.00 0.00 0.00 2.24
266 267 4.122776 CCTTACAATCAATCGCAGCTAGT 58.877 43.478 0.00 0.00 0.00 2.57
267 268 4.210120 GTCCTTACAATCAATCGCAGCTAG 59.790 45.833 0.00 0.00 0.00 3.42
268 269 4.119862 GTCCTTACAATCAATCGCAGCTA 58.880 43.478 0.00 0.00 0.00 3.32
269 270 2.939103 GTCCTTACAATCAATCGCAGCT 59.061 45.455 0.00 0.00 0.00 4.24
270 271 2.939103 AGTCCTTACAATCAATCGCAGC 59.061 45.455 0.00 0.00 0.00 5.25
271 272 5.327091 CAAAGTCCTTACAATCAATCGCAG 58.673 41.667 0.00 0.00 0.00 5.18
272 273 4.155826 CCAAAGTCCTTACAATCAATCGCA 59.844 41.667 0.00 0.00 0.00 5.10
273 274 4.156008 ACCAAAGTCCTTACAATCAATCGC 59.844 41.667 0.00 0.00 0.00 4.58
274 275 5.391950 CCACCAAAGTCCTTACAATCAATCG 60.392 44.000 0.00 0.00 0.00 3.34
275 276 5.710099 TCCACCAAAGTCCTTACAATCAATC 59.290 40.000 0.00 0.00 0.00 2.67
276 277 5.640147 TCCACCAAAGTCCTTACAATCAAT 58.360 37.500 0.00 0.00 0.00 2.57
277 278 5.055265 TCCACCAAAGTCCTTACAATCAA 57.945 39.130 0.00 0.00 0.00 2.57
278 279 4.715534 TCCACCAAAGTCCTTACAATCA 57.284 40.909 0.00 0.00 0.00 2.57
279 280 5.253330 TCATCCACCAAAGTCCTTACAATC 58.747 41.667 0.00 0.00 0.00 2.67
280 281 5.222130 ACTCATCCACCAAAGTCCTTACAAT 60.222 40.000 0.00 0.00 0.00 2.71
281 282 4.104102 ACTCATCCACCAAAGTCCTTACAA 59.896 41.667 0.00 0.00 0.00 2.41
282 283 3.650942 ACTCATCCACCAAAGTCCTTACA 59.349 43.478 0.00 0.00 0.00 2.41
283 284 4.287766 ACTCATCCACCAAAGTCCTTAC 57.712 45.455 0.00 0.00 0.00 2.34
284 285 6.636454 ATTACTCATCCACCAAAGTCCTTA 57.364 37.500 0.00 0.00 0.00 2.69
285 286 4.993705 TTACTCATCCACCAAAGTCCTT 57.006 40.909 0.00 0.00 0.00 3.36
286 287 5.487488 TGTATTACTCATCCACCAAAGTCCT 59.513 40.000 0.00 0.00 0.00 3.85
287 288 5.741011 TGTATTACTCATCCACCAAAGTCC 58.259 41.667 0.00 0.00 0.00 3.85
288 289 7.681939 TTTGTATTACTCATCCACCAAAGTC 57.318 36.000 0.00 0.00 0.00 3.01
289 290 8.650143 AATTTGTATTACTCATCCACCAAAGT 57.350 30.769 0.00 0.00 0.00 2.66
290 291 9.573133 GAAATTTGTATTACTCATCCACCAAAG 57.427 33.333 0.00 0.00 0.00 2.77
291 292 9.308000 AGAAATTTGTATTACTCATCCACCAAA 57.692 29.630 0.00 0.00 0.00 3.28
292 293 8.877864 AGAAATTTGTATTACTCATCCACCAA 57.122 30.769 0.00 0.00 0.00 3.67
293 294 9.391006 GTAGAAATTTGTATTACTCATCCACCA 57.609 33.333 0.00 0.00 0.00 4.17
294 295 8.837389 GGTAGAAATTTGTATTACTCATCCACC 58.163 37.037 0.00 0.00 0.00 4.61
295 296 8.837389 GGGTAGAAATTTGTATTACTCATCCAC 58.163 37.037 0.00 0.00 0.00 4.02
296 297 7.713507 CGGGTAGAAATTTGTATTACTCATCCA 59.286 37.037 0.00 0.00 0.00 3.41
297 298 7.307811 GCGGGTAGAAATTTGTATTACTCATCC 60.308 40.741 0.00 0.00 0.00 3.51
298 299 7.225931 TGCGGGTAGAAATTTGTATTACTCATC 59.774 37.037 0.00 0.00 0.00 2.92
299 300 7.051623 TGCGGGTAGAAATTTGTATTACTCAT 58.948 34.615 0.00 0.00 0.00 2.90
300 301 6.408035 TGCGGGTAGAAATTTGTATTACTCA 58.592 36.000 0.00 0.00 0.00 3.41
301 302 6.913873 TGCGGGTAGAAATTTGTATTACTC 57.086 37.500 0.00 0.00 0.00 2.59
302 303 7.690952 TTTGCGGGTAGAAATTTGTATTACT 57.309 32.000 0.00 0.00 0.00 2.24
303 304 8.745464 TTTTTGCGGGTAGAAATTTGTATTAC 57.255 30.769 0.00 0.00 0.00 1.89
329 330 3.074412 CCGCAGAGTAGACCACATTTTT 58.926 45.455 0.00 0.00 0.00 1.94
330 331 2.699954 CCGCAGAGTAGACCACATTTT 58.300 47.619 0.00 0.00 0.00 1.82
331 332 1.676014 GCCGCAGAGTAGACCACATTT 60.676 52.381 0.00 0.00 0.00 2.32
332 333 0.108138 GCCGCAGAGTAGACCACATT 60.108 55.000 0.00 0.00 0.00 2.71
333 334 0.972983 AGCCGCAGAGTAGACCACAT 60.973 55.000 0.00 0.00 0.00 3.21
334 335 1.595993 GAGCCGCAGAGTAGACCACA 61.596 60.000 0.00 0.00 0.00 4.17
335 336 1.139947 GAGCCGCAGAGTAGACCAC 59.860 63.158 0.00 0.00 0.00 4.16
336 337 1.000771 AGAGCCGCAGAGTAGACCA 60.001 57.895 0.00 0.00 0.00 4.02
337 338 1.032657 TCAGAGCCGCAGAGTAGACC 61.033 60.000 0.00 0.00 0.00 3.85
338 339 0.380378 CTCAGAGCCGCAGAGTAGAC 59.620 60.000 0.00 0.00 0.00 2.59
339 340 1.380403 GCTCAGAGCCGCAGAGTAGA 61.380 60.000 11.84 0.00 34.48 2.59
340 341 1.065600 GCTCAGAGCCGCAGAGTAG 59.934 63.158 11.84 0.00 34.48 2.57
341 342 0.107165 TAGCTCAGAGCCGCAGAGTA 60.107 55.000 19.40 0.00 43.77 2.59
342 343 0.967887 TTAGCTCAGAGCCGCAGAGT 60.968 55.000 19.40 0.81 43.77 3.24
343 344 0.248990 CTTAGCTCAGAGCCGCAGAG 60.249 60.000 19.40 6.29 43.77 3.35
349 350 1.809651 GCCATCACTTAGCTCAGAGCC 60.810 57.143 19.40 1.14 43.77 4.70
386 387 1.852895 CGCTTAATTCCCTTCTCGTCG 59.147 52.381 0.00 0.00 0.00 5.12
539 545 7.436430 CAGATATCTGTTTGGATTGGAGATG 57.564 40.000 22.42 0.00 39.09 2.90
679 701 2.109799 CGGCGCCAGGATTCTGAT 59.890 61.111 28.98 0.00 43.49 2.90
704 726 1.704007 GGATCTGGGAGCTCTTGGGG 61.704 65.000 14.64 0.35 0.00 4.96
816 844 0.608640 AGCGATTCCTGTTCGGTTCT 59.391 50.000 0.00 0.00 44.08 3.01
817 845 1.000145 GAGCGATTCCTGTTCGGTTC 59.000 55.000 0.00 0.00 46.20 3.62
818 846 0.608640 AGAGCGATTCCTGTTCGGTT 59.391 50.000 0.00 0.00 46.20 4.44
820 848 0.528684 GGAGAGCGATTCCTGTTCGG 60.529 60.000 0.00 0.00 37.10 4.30
944 972 0.034089 GGTGGCTGGATTGGTTAGCT 60.034 55.000 0.00 0.00 37.58 3.32
947 975 0.322098 CGTGGTGGCTGGATTGGTTA 60.322 55.000 0.00 0.00 0.00 2.85
974 1006 4.382320 CGGCGGGGAAAGACGGAA 62.382 66.667 0.00 0.00 36.29 4.30
1081 1113 1.448013 GGACCTCGTACTTGCAGCC 60.448 63.158 0.00 0.00 0.00 4.85
1112 1144 0.456312 GAACACGCTAGGTCACGAGG 60.456 60.000 0.00 0.00 0.00 4.63
1138 1170 4.318760 CGTATCCATACCGAACATGCAAAG 60.319 45.833 0.00 0.00 0.00 2.77
1153 1185 4.083431 CGTTAGGATCGAACTCGTATCCAT 60.083 45.833 21.75 14.13 42.74 3.41
1292 1335 4.790140 CAGAAAAGAAAAGATCAATCGCGG 59.210 41.667 6.13 0.00 0.00 6.46
1461 1507 2.791158 CGCAGTTCAGTGAAACACAACC 60.791 50.000 7.25 0.00 41.43 3.77
1465 1511 2.221055 CCTACGCAGTTCAGTGAAACAC 59.779 50.000 7.25 0.00 37.78 3.32
1471 1517 2.325761 GTACACCTACGCAGTTCAGTG 58.674 52.381 0.00 0.00 37.78 3.66
1533 1589 2.394563 GCAGAGCAGCCCTTCGTTC 61.395 63.158 0.00 0.00 0.00 3.95
1572 1628 8.254508 ACCATACGTTTTGCATTGGTATAATTT 58.745 29.630 0.00 0.00 35.77 1.82
1580 1636 3.296322 ACACCATACGTTTTGCATTGG 57.704 42.857 0.00 0.00 0.00 3.16
1638 1694 2.226962 AGCAGATCAACCAAAGCCAT 57.773 45.000 0.00 0.00 0.00 4.40
1686 1742 4.474226 AAAACAGATCACTTCTTCGTGC 57.526 40.909 0.00 0.00 34.92 5.34
1767 1823 3.754323 ACTCTCACCAAGACTAGAGAACG 59.246 47.826 6.26 0.00 38.16 3.95
1939 1998 6.261158 AGGTTTCTCTTAAGTCAAACTTGCTC 59.739 38.462 21.16 11.22 39.11 4.26
2010 2069 9.065798 GTTCTAGGTTTCTCGTAGGTCTATAAT 57.934 37.037 0.00 0.00 35.83 1.28
2011 2070 8.270744 AGTTCTAGGTTTCTCGTAGGTCTATAA 58.729 37.037 0.00 0.00 35.83 0.98
2012 2071 7.800092 AGTTCTAGGTTTCTCGTAGGTCTATA 58.200 38.462 0.00 0.00 35.83 1.31
2013 2072 6.661777 AGTTCTAGGTTTCTCGTAGGTCTAT 58.338 40.000 0.00 0.00 35.83 1.98
2014 2073 6.059787 AGTTCTAGGTTTCTCGTAGGTCTA 57.940 41.667 0.00 0.00 35.83 2.59
2015 2074 4.920999 AGTTCTAGGTTTCTCGTAGGTCT 58.079 43.478 0.00 0.00 35.83 3.85
2016 2075 4.096231 GGAGTTCTAGGTTTCTCGTAGGTC 59.904 50.000 0.00 0.00 35.83 3.85
2017 2076 4.015764 GGAGTTCTAGGTTTCTCGTAGGT 58.984 47.826 0.00 0.00 35.83 3.08
2018 2077 4.015084 TGGAGTTCTAGGTTTCTCGTAGG 58.985 47.826 0.00 0.00 35.83 3.18
2019 2078 5.640189 TTGGAGTTCTAGGTTTCTCGTAG 57.360 43.478 0.00 0.00 36.28 3.51
2020 2079 6.600882 AATTGGAGTTCTAGGTTTCTCGTA 57.399 37.500 0.00 0.00 0.00 3.43
2021 2080 5.485209 AATTGGAGTTCTAGGTTTCTCGT 57.515 39.130 0.00 0.00 0.00 4.18
2022 2081 8.494016 AAATAATTGGAGTTCTAGGTTTCTCG 57.506 34.615 0.00 0.00 0.00 4.04
2037 2096 9.502091 CCATCCGTTCTATAGAAAATAATTGGA 57.498 33.333 16.73 14.02 35.58 3.53
2038 2097 9.502091 TCCATCCGTTCTATAGAAAATAATTGG 57.498 33.333 16.73 16.70 35.58 3.16
2044 2103 8.925338 AGTAACTCCATCCGTTCTATAGAAAAT 58.075 33.333 16.73 8.29 35.58 1.82
2045 2104 8.195436 CAGTAACTCCATCCGTTCTATAGAAAA 58.805 37.037 16.73 6.37 35.58 2.29
2046 2105 7.341256 ACAGTAACTCCATCCGTTCTATAGAAA 59.659 37.037 16.73 2.29 35.58 2.52
2047 2106 6.832384 ACAGTAACTCCATCCGTTCTATAGAA 59.168 38.462 11.24 11.24 0.00 2.10
2048 2107 6.363065 ACAGTAACTCCATCCGTTCTATAGA 58.637 40.000 0.00 0.00 0.00 1.98
2049 2108 6.636562 ACAGTAACTCCATCCGTTCTATAG 57.363 41.667 0.00 0.00 0.00 1.31
2050 2109 7.940688 TCATACAGTAACTCCATCCGTTCTATA 59.059 37.037 0.00 0.00 0.00 1.31
2051 2110 6.776116 TCATACAGTAACTCCATCCGTTCTAT 59.224 38.462 0.00 0.00 0.00 1.98
2052 2111 6.124340 TCATACAGTAACTCCATCCGTTCTA 58.876 40.000 0.00 0.00 0.00 2.10
2053 2112 4.954202 TCATACAGTAACTCCATCCGTTCT 59.046 41.667 0.00 0.00 0.00 3.01
2082 2141 9.513727 AATTTTTAACAACAACAAATGCATTCC 57.486 25.926 13.38 0.00 0.00 3.01
2162 2222 5.932303 TGTTGAGAAGTTAACCTGCATAGTC 59.068 40.000 0.88 0.00 0.00 2.59
2270 2330 3.697542 TGCTTGCATTATTGTCATCTGCT 59.302 39.130 0.00 0.00 34.02 4.24
2293 2353 7.219322 ACCATGAATATCTGAATCGTCATTCA 58.781 34.615 0.00 0.24 45.20 2.57
2398 2458 6.072728 TGTTTGTGTCACTAAATACCTGATGC 60.073 38.462 4.27 0.00 0.00 3.91
2482 2542 6.762702 TCAGCAGAATTTTCATTGATAGCA 57.237 33.333 0.00 0.00 0.00 3.49
2577 2637 9.745018 AATCAGAATCAATTTCTTCAGGTAGAA 57.255 29.630 0.00 0.00 42.15 2.10
2686 2746 1.112113 GATCTTCAGTAGCGGGGTCA 58.888 55.000 0.00 0.00 0.00 4.02
2733 2793 1.314730 GGCCTGGTTTTCGTCAGAAA 58.685 50.000 0.00 0.00 43.91 2.52
2740 2800 3.431725 GGCTCGGCCTGGTTTTCG 61.432 66.667 0.00 0.00 46.69 3.46
2810 2870 6.073222 GGAATAACGGAATAGTTTGATCGCAT 60.073 38.462 0.00 0.00 35.70 4.73
2832 2892 3.054213 TGCATCATCAATGGACTCAGGAA 60.054 43.478 0.00 0.00 35.77 3.36
2833 2893 2.506644 TGCATCATCAATGGACTCAGGA 59.493 45.455 0.00 0.00 35.77 3.86
2910 2971 6.751514 TGACAAGTACAAGTGTGATGTTTT 57.248 33.333 0.00 0.00 32.27 2.43
3011 3072 6.201591 AGGTGGGCATATTTTAATCCTCAAA 58.798 36.000 0.00 0.00 0.00 2.69
3092 3153 2.933573 TGTAACCCAAATGTGACGGTT 58.066 42.857 2.55 2.55 41.43 4.44
3094 3155 4.094294 CACTATGTAACCCAAATGTGACGG 59.906 45.833 0.00 0.00 0.00 4.79
3168 3235 9.319143 CACTTACATTTCTTTATAGAGGGAGTG 57.681 37.037 0.00 0.00 0.00 3.51
3231 3298 1.553248 TGGAAACATGTACTCCCTCCG 59.447 52.381 19.38 0.00 33.40 4.63
3273 3340 3.228749 CAGCAAAGTATTCTGCAACACG 58.771 45.455 0.00 0.00 41.17 4.49
3309 3376 7.344612 TCAACCTCCTCTAGCATTTCACTTATA 59.655 37.037 0.00 0.00 0.00 0.98
3479 3546 4.545823 TTGGCAGAAAACAAAGTACGAG 57.454 40.909 0.00 0.00 0.00 4.18
3670 3752 8.768397 AGGTTATAACTTACCTCATCAATGACA 58.232 33.333 15.05 0.00 40.78 3.58
3834 3919 6.596717 GTGCAACTGTAACACGAATTTATG 57.403 37.500 0.00 0.00 0.00 1.90
4300 4402 7.097834 AGTACAGTAGCTCATTTGTTACCTTC 58.902 38.462 0.00 0.00 0.00 3.46
4339 4441 7.905604 TTGAATCACGGCTAGGAATAATATG 57.094 36.000 0.00 0.00 0.00 1.78
4362 4464 3.092301 GCATGTTAGCCCTCCTTTCTTT 58.908 45.455 0.00 0.00 0.00 2.52
4558 4661 0.036164 TGGAGGTGCGTAATGTTGCT 59.964 50.000 0.00 0.00 0.00 3.91
4572 4675 3.252701 GCATATCAACTCTGCATTGGAGG 59.747 47.826 5.27 0.00 35.96 4.30
4579 4682 2.967599 ACTCGCATATCAACTCTGCA 57.032 45.000 0.00 0.00 35.64 4.41
4617 4720 3.181499 ACAGTATCGACGAAGCTAGTTGG 60.181 47.826 0.00 0.00 0.00 3.77
4734 4837 7.307811 GGCTCATTAACATAAATTAGTCCGGAC 60.308 40.741 27.67 27.67 0.00 4.79
4753 4856 0.107017 CTCATTGGACCGGGCTCATT 60.107 55.000 7.57 0.00 0.00 2.57
4761 4864 1.154205 CCGCTAAGCTCATTGGACCG 61.154 60.000 0.00 0.00 0.00 4.79
4762 4865 0.815615 CCCGCTAAGCTCATTGGACC 60.816 60.000 0.00 0.00 0.00 4.46
4763 4866 1.440145 GCCCGCTAAGCTCATTGGAC 61.440 60.000 0.00 0.00 0.00 4.02
4764 4867 1.153168 GCCCGCTAAGCTCATTGGA 60.153 57.895 0.00 0.00 0.00 3.53
4765 4868 1.153086 AGCCCGCTAAGCTCATTGG 60.153 57.895 0.00 0.00 34.91 3.16
4766 4869 4.547859 AGCCCGCTAAGCTCATTG 57.452 55.556 0.00 0.00 34.91 2.82
4947 5059 2.348998 CAGCTGCTCCCCGAAGTT 59.651 61.111 0.00 0.00 0.00 2.66
5034 5146 2.481185 GGTGTCGTCCAAAGCGAAATTA 59.519 45.455 0.00 0.00 40.19 1.40
5040 5152 2.317609 CCAGGTGTCGTCCAAAGCG 61.318 63.158 0.00 0.00 0.00 4.68
5044 5156 1.125093 ACATCCCAGGTGTCGTCCAA 61.125 55.000 0.00 0.00 0.00 3.53
5075 5190 0.036164 AGGTTAGCACACGCATTCCA 59.964 50.000 0.00 0.00 42.27 3.53
5140 5255 4.993584 CAGATGCTAATAACTCTTGCCGAT 59.006 41.667 0.00 0.00 0.00 4.18
5141 5256 4.141937 ACAGATGCTAATAACTCTTGCCGA 60.142 41.667 0.00 0.00 0.00 5.54
5279 5396 3.969312 TCTGATGACCCTCATATGAGCAA 59.031 43.478 24.81 11.24 37.20 3.91
5350 5467 1.515521 CCGAAGGTTGTGCAGAACCC 61.516 60.000 35.08 22.74 45.85 4.11
5411 5541 8.347035 CGAACAAAGTAGGACCAGAAATTTTAA 58.653 33.333 0.00 0.00 0.00 1.52
5412 5542 7.040961 CCGAACAAAGTAGGACCAGAAATTTTA 60.041 37.037 0.00 0.00 0.00 1.52
5416 5546 4.324267 CCGAACAAAGTAGGACCAGAAAT 58.676 43.478 0.00 0.00 0.00 2.17
5420 5550 1.439679 GCCGAACAAAGTAGGACCAG 58.560 55.000 0.00 0.00 0.00 4.00
5430 5615 2.203337 AGCTGCAGGCCGAACAAA 60.203 55.556 17.12 0.00 43.05 2.83
5432 5617 4.704833 GGAGCTGCAGGCCGAACA 62.705 66.667 17.12 0.00 43.05 3.18
5470 5655 2.608090 CGGAAGGAAAGCCTATTTCGAC 59.392 50.000 0.00 0.00 46.28 4.20
5486 5671 4.695217 TGCTTTATTTACAAGGCGGAAG 57.305 40.909 0.00 0.00 33.48 3.46
5487 5672 4.321378 GGTTGCTTTATTTACAAGGCGGAA 60.321 41.667 0.00 0.00 33.48 4.30
5488 5673 3.191791 GGTTGCTTTATTTACAAGGCGGA 59.808 43.478 0.00 0.00 33.48 5.54
5490 5675 4.167554 TGGTTGCTTTATTTACAAGGCG 57.832 40.909 0.00 0.00 33.48 5.52
5493 5678 7.489113 GGATGTGATGGTTGCTTTATTTACAAG 59.511 37.037 0.00 0.00 0.00 3.16
5500 5685 8.796475 GTTATATGGATGTGATGGTTGCTTTAT 58.204 33.333 0.00 0.00 0.00 1.40
5501 5686 7.041440 CGTTATATGGATGTGATGGTTGCTTTA 60.041 37.037 0.00 0.00 0.00 1.85
5505 5690 4.754618 TCGTTATATGGATGTGATGGTTGC 59.245 41.667 0.00 0.00 0.00 4.17
5523 5708 5.868043 TCTCGATACACTTGAACTCGTTA 57.132 39.130 0.00 0.00 0.00 3.18
5526 5711 7.736031 TTTTATCTCGATACACTTGAACTCG 57.264 36.000 0.00 0.00 0.00 4.18
5553 5739 4.019411 TGTTTGTGCTGATATCCCAGAGAA 60.019 41.667 0.00 0.00 36.29 2.87
5554 5740 3.519107 TGTTTGTGCTGATATCCCAGAGA 59.481 43.478 0.00 0.00 36.29 3.10
5555 5741 3.624861 GTGTTTGTGCTGATATCCCAGAG 59.375 47.826 0.00 0.00 36.29 3.35
5556 5742 3.609853 GTGTTTGTGCTGATATCCCAGA 58.390 45.455 0.00 0.00 36.29 3.86
5557 5743 2.352651 CGTGTTTGTGCTGATATCCCAG 59.647 50.000 0.00 0.00 37.23 4.45
5558 5744 2.355197 CGTGTTTGTGCTGATATCCCA 58.645 47.619 0.00 0.00 0.00 4.37
5559 5745 1.064060 GCGTGTTTGTGCTGATATCCC 59.936 52.381 0.00 0.00 0.00 3.85
5560 5746 1.737236 TGCGTGTTTGTGCTGATATCC 59.263 47.619 0.00 0.00 0.00 2.59
5561 5747 3.125146 TCTTGCGTGTTTGTGCTGATATC 59.875 43.478 0.00 0.00 0.00 1.63
5562 5748 3.073678 TCTTGCGTGTTTGTGCTGATAT 58.926 40.909 0.00 0.00 0.00 1.63
5563 5749 2.488952 TCTTGCGTGTTTGTGCTGATA 58.511 42.857 0.00 0.00 0.00 2.15
5564 5750 1.308047 TCTTGCGTGTTTGTGCTGAT 58.692 45.000 0.00 0.00 0.00 2.90
5565 5751 1.090728 TTCTTGCGTGTTTGTGCTGA 58.909 45.000 0.00 0.00 0.00 4.26
5566 5752 2.124011 ATTCTTGCGTGTTTGTGCTG 57.876 45.000 0.00 0.00 0.00 4.41
5568 5754 3.305629 TCAAAATTCTTGCGTGTTTGTGC 59.694 39.130 0.00 0.00 32.34 4.57
5569 5755 5.447478 TTCAAAATTCTTGCGTGTTTGTG 57.553 34.783 0.00 0.00 32.34 3.33
5571 5757 4.566360 ACCTTCAAAATTCTTGCGTGTTTG 59.434 37.500 0.00 0.00 0.00 2.93
5572 5758 4.566360 CACCTTCAAAATTCTTGCGTGTTT 59.434 37.500 0.00 0.00 0.00 2.83
5573 5759 4.111916 CACCTTCAAAATTCTTGCGTGTT 58.888 39.130 0.00 0.00 0.00 3.32
5574 5760 3.130340 ACACCTTCAAAATTCTTGCGTGT 59.870 39.130 0.00 0.00 0.00 4.49
5575 5761 3.705604 ACACCTTCAAAATTCTTGCGTG 58.294 40.909 0.00 0.00 0.00 5.34
5585 5783 2.238521 GGGCATCTGACACCTTCAAAA 58.761 47.619 0.00 0.00 32.21 2.44
5588 5786 1.296392 CGGGCATCTGACACCTTCA 59.704 57.895 0.00 0.00 0.00 3.02
5598 5796 1.568504 TCTTCCTTACACGGGCATCT 58.431 50.000 0.00 0.00 0.00 2.90
5599 5797 2.484889 GATCTTCCTTACACGGGCATC 58.515 52.381 0.00 0.00 0.00 3.91
5600 5798 1.141053 GGATCTTCCTTACACGGGCAT 59.859 52.381 0.00 0.00 32.53 4.40
5601 5799 0.539986 GGATCTTCCTTACACGGGCA 59.460 55.000 0.00 0.00 32.53 5.36
5602 5800 0.529992 CGGATCTTCCTTACACGGGC 60.530 60.000 0.00 0.00 33.30 6.13
5603 5801 0.104304 CCGGATCTTCCTTACACGGG 59.896 60.000 0.00 0.00 36.45 5.28
5604 5802 0.822164 ACCGGATCTTCCTTACACGG 59.178 55.000 9.46 0.00 44.86 4.94
5605 5803 2.667473 AACCGGATCTTCCTTACACG 57.333 50.000 9.46 0.00 33.30 4.49
5661 5863 6.582636 TGCATATCAATAAGAGTCGGAAACT 58.417 36.000 0.00 0.00 42.42 2.66
5665 5867 6.997655 AGATTGCATATCAATAAGAGTCGGA 58.002 36.000 10.26 0.00 44.95 4.55
5666 5868 7.386025 TCAAGATTGCATATCAATAAGAGTCGG 59.614 37.037 10.26 0.00 44.95 4.79
5672 5874 9.674824 GGAACTTCAAGATTGCATATCAATAAG 57.325 33.333 0.00 10.81 44.95 1.73
5673 5875 9.187996 TGGAACTTCAAGATTGCATATCAATAA 57.812 29.630 0.00 2.70 44.95 1.40
5699 6673 9.601217 GAGAAACACCGATAATAATATAGGCAT 57.399 33.333 0.00 0.00 37.70 4.40
5734 6708 9.726438 TTCTTTTGTCTAATTTTGGTTTTGGAA 57.274 25.926 0.00 0.00 0.00 3.53
5797 6779 3.937706 GGCAGATTTGGGAGATCATATCG 59.062 47.826 0.00 0.00 32.74 2.92
5804 6786 2.423947 GGACATGGCAGATTTGGGAGAT 60.424 50.000 0.00 0.00 0.00 2.75
5849 6831 9.097257 CAAACACTTCAACAGACCAAAATTTAT 57.903 29.630 0.00 0.00 0.00 1.40
5850 6832 8.091449 ACAAACACTTCAACAGACCAAAATTTA 58.909 29.630 0.00 0.00 0.00 1.40
5852 6834 6.368516 CACAAACACTTCAACAGACCAAAATT 59.631 34.615 0.00 0.00 0.00 1.82
5853 6835 5.868801 CACAAACACTTCAACAGACCAAAAT 59.131 36.000 0.00 0.00 0.00 1.82
5861 7094 3.004734 GGGATCCACAAACACTTCAACAG 59.995 47.826 15.23 0.00 0.00 3.16
5918 7151 3.126001 TCTCTTTGTTCATGTCCGCTT 57.874 42.857 0.00 0.00 0.00 4.68
5921 7154 4.560128 TCTCTTCTCTTTGTTCATGTCCG 58.440 43.478 0.00 0.00 0.00 4.79
5948 7181 2.863740 GCTTAGGTTTTGTTGTTGTGCC 59.136 45.455 0.00 0.00 0.00 5.01
5970 7203 2.215196 GTCTGCAAACAACGACCCTAA 58.785 47.619 0.00 0.00 0.00 2.69
5974 7207 2.774439 AATGTCTGCAAACAACGACC 57.226 45.000 0.00 0.00 31.81 4.79
6045 7278 2.408271 TGCAGCCTTGAGTATTCCAG 57.592 50.000 0.00 0.00 0.00 3.86
6046 7279 2.040278 ACTTGCAGCCTTGAGTATTCCA 59.960 45.455 0.00 0.00 0.00 3.53
6055 7288 2.050714 CACGCACTTGCAGCCTTG 60.051 61.111 1.48 0.00 42.21 3.61
6061 7294 2.408428 CAACAGCACGCACTTGCA 59.592 55.556 1.48 0.00 45.62 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.