Multiple sequence alignment - TraesCS1D01G246200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G246200 chr1D 100.000 6575 0 0 1 6575 338871007 338877581 0.000000e+00 12142
1 TraesCS1D01G246200 chr1A 94.938 3971 141 29 1948 5904 438297038 438300962 0.000000e+00 6165
2 TraesCS1D01G246200 chr1A 96.002 1676 48 10 278 1948 438295337 438296998 0.000000e+00 2706
3 TraesCS1D01G246200 chr1A 93.548 310 13 6 6271 6575 551667696 551668003 7.770000e-124 455
4 TraesCS1D01G246200 chr1A 87.879 297 18 6 1 280 438294986 438295281 3.800000e-87 333
5 TraesCS1D01G246200 chr1A 88.318 214 24 1 5979 6192 438301279 438301491 8.460000e-64 255
6 TraesCS1D01G246200 chr1B 95.833 3072 96 22 1948 5002 453341298 453344354 0.000000e+00 4935
7 TraesCS1D01G246200 chr1B 91.822 1076 49 14 279 1341 453339391 453340440 0.000000e+00 1463
8 TraesCS1D01G246200 chr1B 93.545 914 46 5 5001 5904 453344633 453345543 0.000000e+00 1349
9 TraesCS1D01G246200 chr1B 96.721 610 18 2 1340 1948 453340650 453341258 0.000000e+00 1014
10 TraesCS1D01G246200 chr1B 88.889 297 15 6 1 280 453339037 453339332 3.770000e-92 350
11 TraesCS1D01G246200 chr1B 85.484 310 30 7 5914 6213 453345489 453345793 6.400000e-80 309
12 TraesCS1D01G246200 chr4A 82.976 840 64 26 3617 4452 13251146 13251910 0.000000e+00 686
13 TraesCS1D01G246200 chr2D 95.695 302 8 4 6278 6575 43344689 43344989 1.280000e-131 481
14 TraesCS1D01G246200 chr2D 95.066 304 9 4 6278 6575 14886264 14885961 2.150000e-129 473
15 TraesCS1D01G246200 chr2D 94.408 304 11 5 6278 6575 79276815 79277118 4.640000e-126 462
16 TraesCS1D01G246200 chr2D 94.737 95 5 0 1376 1470 114517660 114517566 1.480000e-31 148
17 TraesCS1D01G246200 chr6D 94.444 306 9 4 6278 6575 59192379 59192684 1.290000e-126 464
18 TraesCS1D01G246200 chr6D 93.617 94 6 0 1377 1470 422072020 422072113 2.470000e-29 141
19 TraesCS1D01G246200 chr3D 94.371 302 11 5 6278 6575 311636402 311636701 6.010000e-125 459
20 TraesCS1D01G246200 chr6A 93.485 307 16 3 6272 6575 615300508 615300813 2.800000e-123 453
21 TraesCS1D01G246200 chr4D 93.770 305 13 5 6275 6575 449857106 449856804 2.800000e-123 453
22 TraesCS1D01G246200 chr4D 93.729 303 13 5 6277 6575 505823388 505823088 3.620000e-122 449
23 TraesCS1D01G246200 chr2B 96.842 95 3 0 1376 1470 164901472 164901378 6.820000e-35 159
24 TraesCS1D01G246200 chr5A 94.681 94 5 0 1377 1470 482125603 482125510 5.310000e-31 147
25 TraesCS1D01G246200 chr7D 89.189 111 10 2 1374 1484 506006949 506007057 3.200000e-28 137
26 TraesCS1D01G246200 chr2A 91.089 101 9 0 1377 1477 40562507 40562407 3.200000e-28 137
27 TraesCS1D01G246200 chr7A 89.189 111 9 3 1374 1484 573432702 573432809 1.150000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G246200 chr1D 338871007 338877581 6574 False 12142.00 12142 100.00000 1 6575 1 chr1D.!!$F1 6574
1 TraesCS1D01G246200 chr1A 438294986 438301491 6505 False 2364.75 6165 91.78425 1 6192 4 chr1A.!!$F2 6191
2 TraesCS1D01G246200 chr1B 453339037 453345793 6756 False 1570.00 4935 92.04900 1 6213 6 chr1B.!!$F1 6212
3 TraesCS1D01G246200 chr4A 13251146 13251910 764 False 686.00 686 82.97600 3617 4452 1 chr4A.!!$F1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 886 0.392729 GAGGAGCATGTTCAGCAGCT 60.393 55.000 11.93 0.00 40.60 4.24 F
1554 1858 1.497286 AGGGCTCCTTTGTGGTTAACA 59.503 47.619 8.10 0.00 36.85 2.41 F
2693 3040 3.058016 TGAGCATTGCTAGCAAACTTGTC 60.058 43.478 32.35 22.56 39.88 3.18 F
3822 4183 0.468226 TACCAAGCGATCCCATCACC 59.532 55.000 0.00 0.00 0.00 4.02 F
4053 4415 2.103263 GACTGGTCCTCTTCTGTTGTGT 59.897 50.000 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2409 3.983044 AAGGAGACCATGGTACTGAAC 57.017 47.619 19.80 3.82 0.00 3.18 R
3010 3359 2.359848 ACCTTTGGGTTTACTCGCAAAC 59.640 45.455 5.15 0.00 44.73 2.93 R
4421 4785 1.511613 TCATCCCCTGGATTCTCCAC 58.488 55.000 0.00 0.00 42.67 4.02 R
5062 5716 0.666913 GCTGATCGCCATTGCATTCT 59.333 50.000 0.00 0.00 37.32 2.40 R
5924 6580 0.307760 CTCAACTGGTTGTGCGGTTC 59.692 55.000 12.34 0.00 41.16 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.542574 TTTTTCATATGCAAAGCAGTTTGG 57.457 33.333 0.00 0.00 43.65 3.28
129 130 3.005367 GGTCGTTGATGGTCAAATTGGTT 59.995 43.478 0.00 0.00 38.22 3.67
135 136 3.005684 TGATGGTCAAATTGGTTCTGCAC 59.994 43.478 0.00 0.00 0.00 4.57
225 243 9.868277 GATGGGATGTACATGTTTGAATAAAAA 57.132 29.630 14.43 0.00 0.00 1.94
252 270 0.744874 CTTGCCTGATTGCCTCCATG 59.255 55.000 0.00 0.00 0.00 3.66
269 287 2.355007 CCATGGAAATTTGTCCTTGCCC 60.355 50.000 5.56 0.00 40.09 5.36
414 493 0.883814 CATCCTCGCTGGGCATCTTC 60.884 60.000 0.00 0.00 36.20 2.87
520 605 4.753107 GCACCACTACAAGCACTTTACTTA 59.247 41.667 0.00 0.00 0.00 2.24
558 643 6.564539 TGGTGGGGGATCATATAGTTATTGAA 59.435 38.462 0.00 0.00 0.00 2.69
561 646 6.113411 GGGGGATCATATAGTTATTGAACCG 58.887 44.000 0.00 0.00 36.08 4.44
576 661 0.899019 AACCGGCAGTGTTTGGTTTT 59.101 45.000 0.00 0.00 41.80 2.43
594 679 4.143179 GGTTTTATCAAGTTCTCGTCGGTG 60.143 45.833 0.00 0.00 0.00 4.94
708 793 6.600822 ACAAGTAAGGGAATCAATCATCACAG 59.399 38.462 0.00 0.00 0.00 3.66
787 872 8.928733 CAAACAAAAATGTATTGGATTGAGGAG 58.071 33.333 0.00 0.00 33.88 3.69
801 886 0.392729 GAGGAGCATGTTCAGCAGCT 60.393 55.000 11.93 0.00 40.60 4.24
865 957 2.802816 GGCTCCTAGTGATGCAATTACG 59.197 50.000 0.00 0.00 37.97 3.18
866 958 2.802816 GCTCCTAGTGATGCAATTACGG 59.197 50.000 0.00 0.00 37.97 4.02
867 959 3.741388 GCTCCTAGTGATGCAATTACGGT 60.741 47.826 0.00 0.00 37.97 4.83
868 960 4.442706 CTCCTAGTGATGCAATTACGGTT 58.557 43.478 0.00 0.00 37.97 4.44
869 961 5.597806 CTCCTAGTGATGCAATTACGGTTA 58.402 41.667 0.00 0.00 37.97 2.85
870 962 5.353938 TCCTAGTGATGCAATTACGGTTAC 58.646 41.667 0.00 0.00 37.97 2.50
874 966 4.081087 AGTGATGCAATTACGGTTACCTCT 60.081 41.667 0.00 0.00 37.97 3.69
1038 1130 3.118261 CCTTAAGCCTGTCAATCTGCCTA 60.118 47.826 0.00 0.00 0.00 3.93
1262 1354 3.007506 TCTGGAAAAGGTGCGATGAGTTA 59.992 43.478 0.00 0.00 0.00 2.24
1495 1798 9.610705 AGCTATTATCATAATGCTGGATTAGTG 57.389 33.333 11.38 6.44 29.78 2.74
1554 1858 1.497286 AGGGCTCCTTTGTGGTTAACA 59.503 47.619 8.10 0.00 36.85 2.41
2049 2394 5.624344 ATGCTGCTATGCTGTGATATTTC 57.376 39.130 0.00 0.00 0.00 2.17
2051 2396 5.128205 TGCTGCTATGCTGTGATATTTCTT 58.872 37.500 0.00 0.00 0.00 2.52
2344 2690 4.947388 GCTTGACAAAATCAGGGTATACCA 59.053 41.667 23.33 3.43 43.89 3.25
2387 2733 7.973048 AACACTATGTATTCTACCTTGGAGA 57.027 36.000 0.00 0.00 0.00 3.71
2388 2734 7.973048 ACACTATGTATTCTACCTTGGAGAA 57.027 36.000 0.00 0.00 37.34 2.87
2466 2813 8.343168 TGTAATTTCTAGTTGGTTTGTATGGG 57.657 34.615 0.00 0.00 0.00 4.00
2693 3040 3.058016 TGAGCATTGCTAGCAAACTTGTC 60.058 43.478 32.35 22.56 39.88 3.18
2699 3046 7.284034 AGCATTGCTAGCAAACTTGTCTTATAT 59.716 33.333 32.35 9.76 36.99 0.86
2736 3083 7.339212 AGTGCCAATTACTATAAAATGACAGCA 59.661 33.333 0.00 0.00 0.00 4.41
2836 3183 7.015292 AGCATTATTTTGATCATGCCTTGAGAT 59.985 33.333 12.02 0.00 42.60 2.75
2837 3184 7.656137 GCATTATTTTGATCATGCCTTGAGATT 59.344 33.333 5.57 0.00 37.89 2.40
3010 3359 0.881796 TAGGCGCTGATATGGACTCG 59.118 55.000 7.64 0.00 0.00 4.18
3174 3527 6.095580 TCCTTTGTGTTGTTTGCATGTAGTTA 59.904 34.615 0.00 0.00 0.00 2.24
3259 3612 4.859304 ATGAAATGCACACACTCATGTT 57.141 36.364 0.00 0.00 36.72 2.71
3519 3877 7.371159 GGAAGTTTTATTCAGGTCTTTGAAGG 58.629 38.462 0.00 0.00 40.16 3.46
3533 3894 2.514458 TGAAGGCAGATTTTCCCCTC 57.486 50.000 0.00 0.00 0.00 4.30
3822 4183 0.468226 TACCAAGCGATCCCATCACC 59.532 55.000 0.00 0.00 0.00 4.02
4016 4378 8.101654 TGTCAGTTTAGTTTATTACCGCATTT 57.898 30.769 0.00 0.00 0.00 2.32
4053 4415 2.103263 GACTGGTCCTCTTCTGTTGTGT 59.897 50.000 0.00 0.00 0.00 3.72
4126 4488 8.402472 GGAATACAATATCGGTCATTTTCACAA 58.598 33.333 0.00 0.00 0.00 3.33
4719 5085 5.353123 TGTTTCGAGCTACTCTTTTGTTTGT 59.647 36.000 0.00 0.00 0.00 2.83
4720 5086 5.403897 TTCGAGCTACTCTTTTGTTTGTG 57.596 39.130 0.00 0.00 0.00 3.33
4736 5102 9.442047 TTTTGTTTGTGTTTCCTGATATGTTTT 57.558 25.926 0.00 0.00 0.00 2.43
4842 5208 6.899075 TGGTGTTATACAGTCCTATTACCACT 59.101 38.462 0.00 0.00 30.24 4.00
4843 5209 7.400915 TGGTGTTATACAGTCCTATTACCACTT 59.599 37.037 0.00 0.00 30.24 3.16
4871 5238 8.656806 ACTCCCTTTTTGATAATATGGTCGATA 58.343 33.333 0.00 0.00 0.00 2.92
4926 5293 2.840038 AGGTAGTGATGACCTGCATTCA 59.160 45.455 0.89 0.89 45.90 2.57
4931 5298 2.557924 GTGATGACCTGCATTCAAACCA 59.442 45.455 2.48 0.12 37.34 3.67
4957 5324 4.638421 TGTCCTTACAACTGGTGTTTCAAG 59.362 41.667 2.56 1.48 41.98 3.02
4979 5346 4.965532 AGCTAGTAAGGAGTGGACATTGAT 59.034 41.667 0.00 0.00 0.00 2.57
5040 5687 7.701539 TGATAGTAGTAAAGAAACGGTGGTA 57.298 36.000 0.00 0.00 0.00 3.25
5056 5710 4.493545 CGGTGGTACATTTTATTGCTCGTC 60.494 45.833 0.00 0.00 44.52 4.20
5062 5716 3.058570 ACATTTTATTGCTCGTCGTTGCA 60.059 39.130 10.54 10.54 37.42 4.08
5109 5763 3.685139 ATTCGTTGCTTCTCTTCCTGA 57.315 42.857 0.00 0.00 0.00 3.86
5267 5922 7.710044 GGCTACTACCTAGTTAAATCCTGTTTC 59.290 40.741 0.00 0.00 37.73 2.78
5315 5970 4.881850 AGTGGGTCGATGGAATTTATTGTC 59.118 41.667 0.00 0.00 0.00 3.18
5407 6062 9.924650 TGATTTGAAGGTTAGTTAGTTCTACTC 57.075 33.333 0.00 0.00 0.00 2.59
5427 6082 5.497474 ACTCTACTGTTTGGTTTTGACTGT 58.503 37.500 0.00 0.00 0.00 3.55
5620 6276 4.351192 CTGTTTCTTGTTAGTGGCACAAC 58.649 43.478 21.41 20.14 44.16 3.32
5659 6315 9.500864 GCATCAAATTTGTTTAAAAATGTGTGT 57.499 25.926 17.47 0.00 36.52 3.72
5686 6342 2.473816 CTGTCCCATACATAGCGTGTG 58.526 52.381 7.88 0.00 42.24 3.82
5742 6398 6.817140 CCTGTACCCTGTTTGTAGTATTTCTC 59.183 42.308 0.00 0.00 0.00 2.87
5749 6405 7.036220 CCTGTTTGTAGTATTTCTCGTGAGAT 58.964 38.462 0.00 0.00 40.84 2.75
5790 6446 4.709397 ACATGAACTGTTGGGTCTTTGAAA 59.291 37.500 0.00 0.00 32.90 2.69
5799 6455 3.218453 TGGGTCTTTGAAATCTTTGCGA 58.782 40.909 0.00 0.00 0.00 5.10
5823 6479 5.488341 TCTGCTCCACTACCTAAATTTCAC 58.512 41.667 0.00 0.00 0.00 3.18
5882 6538 0.036010 AACCGCTCAACATCCAGGAG 60.036 55.000 0.00 0.00 0.00 3.69
5883 6539 1.194781 ACCGCTCAACATCCAGGAGT 61.195 55.000 0.00 0.00 0.00 3.85
5884 6540 0.036010 CCGCTCAACATCCAGGAGTT 60.036 55.000 0.00 0.00 0.00 3.01
5885 6541 1.207089 CCGCTCAACATCCAGGAGTTA 59.793 52.381 0.00 0.00 0.00 2.24
5886 6542 2.271800 CGCTCAACATCCAGGAGTTAC 58.728 52.381 0.00 0.00 0.00 2.50
5887 6543 2.093973 CGCTCAACATCCAGGAGTTACT 60.094 50.000 0.00 0.00 0.00 2.24
5888 6544 3.617531 CGCTCAACATCCAGGAGTTACTT 60.618 47.826 0.00 0.00 0.00 2.24
5889 6545 4.327680 GCTCAACATCCAGGAGTTACTTT 58.672 43.478 0.00 0.00 0.00 2.66
5890 6546 4.762251 GCTCAACATCCAGGAGTTACTTTT 59.238 41.667 0.00 0.00 0.00 2.27
5891 6547 5.106515 GCTCAACATCCAGGAGTTACTTTTC 60.107 44.000 0.00 0.00 0.00 2.29
5892 6548 6.187727 TCAACATCCAGGAGTTACTTTTCT 57.812 37.500 0.00 0.00 0.00 2.52
5893 6549 6.601332 TCAACATCCAGGAGTTACTTTTCTT 58.399 36.000 0.00 0.00 0.00 2.52
5894 6550 7.060421 TCAACATCCAGGAGTTACTTTTCTTT 58.940 34.615 0.00 0.00 0.00 2.52
5895 6551 7.559897 TCAACATCCAGGAGTTACTTTTCTTTT 59.440 33.333 0.00 0.00 0.00 2.27
5896 6552 7.511959 ACATCCAGGAGTTACTTTTCTTTTC 57.488 36.000 0.00 0.00 0.00 2.29
5897 6553 7.290813 ACATCCAGGAGTTACTTTTCTTTTCT 58.709 34.615 0.00 0.00 0.00 2.52
5898 6554 8.437575 ACATCCAGGAGTTACTTTTCTTTTCTA 58.562 33.333 0.00 0.00 0.00 2.10
5899 6555 9.454859 CATCCAGGAGTTACTTTTCTTTTCTAT 57.545 33.333 0.00 0.00 0.00 1.98
5919 6575 9.639601 TTTCTATTAGTAGTGTGATGTGTTCTG 57.360 33.333 0.00 0.00 0.00 3.02
5920 6576 7.258441 TCTATTAGTAGTGTGATGTGTTCTGC 58.742 38.462 0.00 0.00 0.00 4.26
5921 6577 5.468540 TTAGTAGTGTGATGTGTTCTGCT 57.531 39.130 0.00 0.00 0.00 4.24
5922 6578 4.342862 AGTAGTGTGATGTGTTCTGCTT 57.657 40.909 0.00 0.00 0.00 3.91
5923 6579 4.310769 AGTAGTGTGATGTGTTCTGCTTC 58.689 43.478 0.00 0.00 0.00 3.86
5924 6580 2.138320 AGTGTGATGTGTTCTGCTTCG 58.862 47.619 0.00 0.00 0.00 3.79
5925 6581 2.135139 GTGTGATGTGTTCTGCTTCGA 58.865 47.619 0.00 0.00 0.00 3.71
5926 6582 2.543848 GTGTGATGTGTTCTGCTTCGAA 59.456 45.455 0.00 0.00 0.00 3.71
5927 6583 2.543848 TGTGATGTGTTCTGCTTCGAAC 59.456 45.455 0.00 7.02 42.73 3.95
5928 6584 2.096218 GTGATGTGTTCTGCTTCGAACC 60.096 50.000 0.00 0.00 41.95 3.62
5929 6585 1.126846 GATGTGTTCTGCTTCGAACCG 59.873 52.381 0.00 0.00 41.95 4.44
5930 6586 1.204312 GTGTTCTGCTTCGAACCGC 59.796 57.895 0.00 0.00 41.95 5.68
5931 6587 1.227409 TGTTCTGCTTCGAACCGCA 60.227 52.632 11.13 11.13 41.95 5.69
5932 6588 1.204312 GTTCTGCTTCGAACCGCAC 59.796 57.895 7.91 0.00 37.82 5.34
5933 6589 1.227409 TTCTGCTTCGAACCGCACA 60.227 52.632 7.91 0.00 31.95 4.57
5934 6590 0.812014 TTCTGCTTCGAACCGCACAA 60.812 50.000 7.91 2.44 31.95 3.33
5935 6591 1.082756 CTGCTTCGAACCGCACAAC 60.083 57.895 7.91 0.00 31.95 3.32
5936 6592 2.251371 GCTTCGAACCGCACAACC 59.749 61.111 4.64 0.00 0.00 3.77
5937 6593 2.539338 GCTTCGAACCGCACAACCA 61.539 57.895 4.64 0.00 0.00 3.67
5938 6594 1.569493 CTTCGAACCGCACAACCAG 59.431 57.895 0.00 0.00 0.00 4.00
5939 6595 1.153329 TTCGAACCGCACAACCAGT 60.153 52.632 0.00 0.00 0.00 4.00
5940 6596 0.745128 TTCGAACCGCACAACCAGTT 60.745 50.000 0.00 0.00 0.00 3.16
5966 6622 9.886132 TGAGTTACTTTTCTTTTCTCTTAGTGT 57.114 29.630 0.00 0.00 0.00 3.55
5996 6955 5.686834 CCTAAAGCTTTACGGTTTTGACTC 58.313 41.667 14.96 0.00 42.78 3.36
6018 6984 1.681264 GTGCTTAGCCACCACAACTTT 59.319 47.619 0.29 0.00 0.00 2.66
6031 6997 5.240623 CACCACAACTTTAGCATTCAGGTAA 59.759 40.000 0.00 0.00 38.35 2.85
6032 6998 5.830991 ACCACAACTTTAGCATTCAGGTAAA 59.169 36.000 0.00 0.00 45.18 2.01
6033 6999 6.493458 ACCACAACTTTAGCATTCAGGTAAAT 59.507 34.615 0.00 0.00 45.90 1.40
6089 7055 3.906008 CGTGCTTTTGTGTAGGATTTTCG 59.094 43.478 0.00 0.00 0.00 3.46
6103 7069 2.663826 TTTTCGGCTTGCAAGTTGTT 57.336 40.000 26.55 0.00 0.00 2.83
6116 7082 5.105063 TGCAAGTTGTTATGATCTCTCTCG 58.895 41.667 4.48 0.00 0.00 4.04
6122 7088 1.621992 TATGATCTCTCTCGGCCCAC 58.378 55.000 0.00 0.00 0.00 4.61
6134 7100 1.908299 GGCCCACAACTTTCCCCTG 60.908 63.158 0.00 0.00 0.00 4.45
6137 7103 1.153756 CCACAACTTTCCCCTGGCT 59.846 57.895 0.00 0.00 0.00 4.75
6146 7112 0.323725 TTCCCCTGGCTGAAATGCTC 60.324 55.000 0.00 0.00 0.00 4.26
6147 7113 2.117156 CCCCTGGCTGAAATGCTCG 61.117 63.158 0.00 0.00 0.00 5.03
6149 7115 1.748122 CCTGGCTGAAATGCTCGCT 60.748 57.895 0.00 0.00 0.00 4.93
6192 7158 1.244019 CCAAAGGAAAGGAGCACCGG 61.244 60.000 0.00 0.00 41.83 5.28
6195 7161 1.415672 AAGGAAAGGAGCACCGGTCA 61.416 55.000 2.59 0.00 41.83 4.02
6198 7164 0.036388 GAAAGGAGCACCGGTCATCA 60.036 55.000 2.59 0.00 41.83 3.07
6203 7169 1.620819 GGAGCACCGGTCATCATCTAT 59.379 52.381 2.59 0.00 0.00 1.98
6213 7179 6.127591 ACCGGTCATCATCTATAGCATTCTAC 60.128 42.308 0.00 0.00 0.00 2.59
6214 7180 6.269315 CGGTCATCATCTATAGCATTCTACC 58.731 44.000 0.00 0.00 0.00 3.18
6215 7181 6.269315 GGTCATCATCTATAGCATTCTACCG 58.731 44.000 0.00 0.00 0.00 4.02
6216 7182 6.127591 GGTCATCATCTATAGCATTCTACCGT 60.128 42.308 0.00 0.00 0.00 4.83
6217 7183 6.749578 GTCATCATCTATAGCATTCTACCGTG 59.250 42.308 0.00 0.00 0.00 4.94
6218 7184 5.644977 TCATCTATAGCATTCTACCGTGG 57.355 43.478 0.00 0.00 0.00 4.94
6219 7185 5.321927 TCATCTATAGCATTCTACCGTGGA 58.678 41.667 0.00 0.00 0.00 4.02
6220 7186 5.773176 TCATCTATAGCATTCTACCGTGGAA 59.227 40.000 0.00 0.00 0.00 3.53
6221 7187 6.266786 TCATCTATAGCATTCTACCGTGGAAA 59.733 38.462 1.01 0.00 0.00 3.13
6222 7188 6.085555 TCTATAGCATTCTACCGTGGAAAG 57.914 41.667 1.01 0.00 0.00 2.62
6223 7189 5.831525 TCTATAGCATTCTACCGTGGAAAGA 59.168 40.000 1.01 0.00 0.00 2.52
6224 7190 3.695830 AGCATTCTACCGTGGAAAGAA 57.304 42.857 1.01 9.68 34.00 2.52
6225 7191 3.335579 AGCATTCTACCGTGGAAAGAAC 58.664 45.455 1.01 0.00 32.38 3.01
6226 7192 2.418976 GCATTCTACCGTGGAAAGAACC 59.581 50.000 1.01 0.00 32.38 3.62
6227 7193 3.670625 CATTCTACCGTGGAAAGAACCA 58.329 45.455 1.01 0.00 37.63 3.67
6236 7202 3.611025 TGGAAAGAACCACCATTCCTT 57.389 42.857 5.15 0.00 41.51 3.36
6237 7203 3.922375 TGGAAAGAACCACCATTCCTTT 58.078 40.909 5.15 0.00 41.51 3.11
6238 7204 5.068215 TGGAAAGAACCACCATTCCTTTA 57.932 39.130 5.15 0.00 41.51 1.85
6239 7205 5.459505 TGGAAAGAACCACCATTCCTTTAA 58.540 37.500 5.15 0.00 41.51 1.52
6240 7206 6.081356 TGGAAAGAACCACCATTCCTTTAAT 58.919 36.000 5.15 0.00 41.51 1.40
6241 7207 7.242359 TGGAAAGAACCACCATTCCTTTAATA 58.758 34.615 5.15 0.00 41.51 0.98
6242 7208 7.396055 TGGAAAGAACCACCATTCCTTTAATAG 59.604 37.037 5.15 0.00 41.51 1.73
6243 7209 7.147897 GGAAAGAACCACCATTCCTTTAATAGG 60.148 40.741 0.00 0.00 46.27 2.57
6244 7210 5.766590 AGAACCACCATTCCTTTAATAGGG 58.233 41.667 0.00 0.00 44.86 3.53
6245 7211 5.255443 AGAACCACCATTCCTTTAATAGGGT 59.745 40.000 0.00 0.00 44.86 4.34
6246 7212 4.867086 ACCACCATTCCTTTAATAGGGTG 58.133 43.478 0.00 0.00 44.86 4.61
6247 7213 3.636764 CCACCATTCCTTTAATAGGGTGC 59.363 47.826 0.00 0.00 44.86 5.01
6248 7214 4.536765 CACCATTCCTTTAATAGGGTGCT 58.463 43.478 0.00 0.00 44.86 4.40
6249 7215 4.956075 CACCATTCCTTTAATAGGGTGCTT 59.044 41.667 0.00 0.00 44.86 3.91
6250 7216 6.126409 CACCATTCCTTTAATAGGGTGCTTA 58.874 40.000 0.00 0.00 44.86 3.09
6251 7217 6.777580 CACCATTCCTTTAATAGGGTGCTTAT 59.222 38.462 0.00 0.00 44.86 1.73
6252 7218 7.287696 CACCATTCCTTTAATAGGGTGCTTATT 59.712 37.037 0.00 0.00 44.86 1.40
6253 7219 7.505923 ACCATTCCTTTAATAGGGTGCTTATTC 59.494 37.037 0.00 0.00 44.86 1.75
6254 7220 7.725844 CCATTCCTTTAATAGGGTGCTTATTCT 59.274 37.037 0.00 0.00 44.86 2.40
6255 7221 9.793259 CATTCCTTTAATAGGGTGCTTATTCTA 57.207 33.333 0.00 0.00 44.86 2.10
6256 7222 9.794719 ATTCCTTTAATAGGGTGCTTATTCTAC 57.205 33.333 0.00 0.00 44.86 2.59
6257 7223 8.562949 TCCTTTAATAGGGTGCTTATTCTACT 57.437 34.615 0.00 0.00 44.86 2.57
6258 7224 8.429641 TCCTTTAATAGGGTGCTTATTCTACTG 58.570 37.037 0.00 0.00 44.86 2.74
6259 7225 8.211629 CCTTTAATAGGGTGCTTATTCTACTGT 58.788 37.037 0.00 0.00 40.67 3.55
6260 7226 8.958119 TTTAATAGGGTGCTTATTCTACTGTG 57.042 34.615 0.00 0.00 0.00 3.66
6261 7227 3.914426 AGGGTGCTTATTCTACTGTGG 57.086 47.619 0.00 0.00 0.00 4.17
6262 7228 3.450904 AGGGTGCTTATTCTACTGTGGA 58.549 45.455 0.00 0.00 0.00 4.02
6263 7229 3.844211 AGGGTGCTTATTCTACTGTGGAA 59.156 43.478 9.08 9.08 0.00 3.53
6264 7230 4.080863 AGGGTGCTTATTCTACTGTGGAAG 60.081 45.833 12.18 0.39 0.00 3.46
6265 7231 4.081087 GGGTGCTTATTCTACTGTGGAAGA 60.081 45.833 12.18 4.97 0.00 2.87
6266 7232 4.870991 GGTGCTTATTCTACTGTGGAAGAC 59.129 45.833 12.18 4.22 0.00 3.01
6267 7233 4.870991 GTGCTTATTCTACTGTGGAAGACC 59.129 45.833 12.18 2.88 0.00 3.85
6268 7234 4.530553 TGCTTATTCTACTGTGGAAGACCA 59.469 41.667 12.18 5.18 44.76 4.02
6276 7242 4.002006 TGGAAGACCAACCTGCCT 57.998 55.556 0.00 0.00 43.91 4.75
6277 7243 2.240510 TGGAAGACCAACCTGCCTT 58.759 52.632 0.00 0.00 43.91 4.35
6278 7244 1.440618 TGGAAGACCAACCTGCCTTA 58.559 50.000 0.00 0.00 43.91 2.69
6279 7245 1.777878 TGGAAGACCAACCTGCCTTAA 59.222 47.619 0.00 0.00 43.91 1.85
6280 7246 2.224769 TGGAAGACCAACCTGCCTTAAG 60.225 50.000 0.00 0.00 43.91 1.85
6281 7247 2.039879 GGAAGACCAACCTGCCTTAAGA 59.960 50.000 3.36 0.00 35.97 2.10
6282 7248 3.339141 GAAGACCAACCTGCCTTAAGAG 58.661 50.000 3.36 0.00 0.00 2.85
6283 7249 1.003696 AGACCAACCTGCCTTAAGAGC 59.996 52.381 3.36 6.52 0.00 4.09
6284 7250 0.771127 ACCAACCTGCCTTAAGAGCA 59.229 50.000 15.11 15.11 38.82 4.26
6285 7251 1.355720 ACCAACCTGCCTTAAGAGCAT 59.644 47.619 15.95 3.55 40.04 3.79
6286 7252 2.019984 CCAACCTGCCTTAAGAGCATC 58.980 52.381 15.95 0.00 40.04 3.91
6297 7263 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
6318 7284 3.274601 CCCCCAGGACGCATAAAAA 57.725 52.632 0.00 0.00 33.47 1.94
6319 7285 1.775385 CCCCCAGGACGCATAAAAAT 58.225 50.000 0.00 0.00 33.47 1.82
6320 7286 1.681264 CCCCCAGGACGCATAAAAATC 59.319 52.381 0.00 0.00 33.47 2.17
6321 7287 1.333619 CCCCAGGACGCATAAAAATCG 59.666 52.381 0.00 0.00 0.00 3.34
6322 7288 1.268539 CCCAGGACGCATAAAAATCGC 60.269 52.381 0.00 0.00 0.00 4.58
6323 7289 1.268539 CCAGGACGCATAAAAATCGCC 60.269 52.381 0.00 0.00 0.00 5.54
6324 7290 1.021968 AGGACGCATAAAAATCGCCC 58.978 50.000 0.00 0.00 0.00 6.13
6325 7291 0.030235 GGACGCATAAAAATCGCCCC 59.970 55.000 0.00 0.00 0.00 5.80
6326 7292 0.030235 GACGCATAAAAATCGCCCCC 59.970 55.000 0.00 0.00 0.00 5.40
6327 7293 0.395173 ACGCATAAAAATCGCCCCCT 60.395 50.000 0.00 0.00 0.00 4.79
6328 7294 0.030638 CGCATAAAAATCGCCCCCTG 59.969 55.000 0.00 0.00 0.00 4.45
6329 7295 0.389025 GCATAAAAATCGCCCCCTGG 59.611 55.000 0.00 0.00 0.00 4.45
6350 7316 3.554692 CGAGCCGGCGACACAATC 61.555 66.667 23.20 10.39 0.00 2.67
6359 7325 3.499737 GACACAATCGGCGCTGGG 61.500 66.667 17.88 5.61 0.00 4.45
6381 7347 3.723348 GGTTTGCGCCCAGTCGTC 61.723 66.667 4.18 0.00 0.00 4.20
6382 7348 4.072088 GTTTGCGCCCAGTCGTCG 62.072 66.667 4.18 0.00 0.00 5.12
6389 7355 3.528370 CCCAGTCGTCGCCCCTAG 61.528 72.222 0.00 0.00 0.00 3.02
6390 7356 3.528370 CCAGTCGTCGCCCCTAGG 61.528 72.222 0.06 0.06 0.00 3.02
6400 7366 2.192175 CCCCTAGGCGCCGAAATT 59.808 61.111 23.20 5.39 0.00 1.82
6401 7367 1.448497 CCCCTAGGCGCCGAAATTA 59.552 57.895 23.20 6.47 0.00 1.40
6402 7368 0.602905 CCCCTAGGCGCCGAAATTAG 60.603 60.000 23.20 16.49 0.00 1.73
6403 7369 1.228657 CCCTAGGCGCCGAAATTAGC 61.229 60.000 23.20 0.00 0.00 3.09
6406 7372 2.893404 GGCGCCGAAATTAGCCGA 60.893 61.111 12.58 0.00 40.17 5.54
6407 7373 2.323447 GCGCCGAAATTAGCCGAC 59.677 61.111 0.00 0.00 0.00 4.79
6408 7374 2.171725 GCGCCGAAATTAGCCGACT 61.172 57.895 0.00 0.00 0.00 4.18
6409 7375 1.702491 GCGCCGAAATTAGCCGACTT 61.702 55.000 0.00 0.00 0.00 3.01
6410 7376 0.725117 CGCCGAAATTAGCCGACTTT 59.275 50.000 0.00 0.00 0.00 2.66
6411 7377 1.129811 CGCCGAAATTAGCCGACTTTT 59.870 47.619 0.00 0.00 0.00 2.27
6412 7378 2.782163 GCCGAAATTAGCCGACTTTTC 58.218 47.619 0.00 0.00 0.00 2.29
6413 7379 2.160813 GCCGAAATTAGCCGACTTTTCA 59.839 45.455 0.00 0.00 0.00 2.69
6414 7380 3.727970 GCCGAAATTAGCCGACTTTTCAG 60.728 47.826 0.00 0.00 0.00 3.02
6415 7381 3.417185 CGAAATTAGCCGACTTTTCAGC 58.583 45.455 0.00 0.00 0.00 4.26
6416 7382 3.727970 CGAAATTAGCCGACTTTTCAGCC 60.728 47.826 0.00 0.00 0.00 4.85
6417 7383 1.751437 ATTAGCCGACTTTTCAGCCC 58.249 50.000 0.00 0.00 0.00 5.19
6418 7384 0.322187 TTAGCCGACTTTTCAGCCCC 60.322 55.000 0.00 0.00 0.00 5.80
6419 7385 1.485294 TAGCCGACTTTTCAGCCCCA 61.485 55.000 0.00 0.00 0.00 4.96
6420 7386 1.678970 GCCGACTTTTCAGCCCCAT 60.679 57.895 0.00 0.00 0.00 4.00
6421 7387 1.250840 GCCGACTTTTCAGCCCCATT 61.251 55.000 0.00 0.00 0.00 3.16
6422 7388 1.256812 CCGACTTTTCAGCCCCATTT 58.743 50.000 0.00 0.00 0.00 2.32
6423 7389 1.202348 CCGACTTTTCAGCCCCATTTC 59.798 52.381 0.00 0.00 0.00 2.17
6424 7390 1.135689 CGACTTTTCAGCCCCATTTCG 60.136 52.381 0.00 0.00 0.00 3.46
6425 7391 1.202348 GACTTTTCAGCCCCATTTCGG 59.798 52.381 0.00 0.00 0.00 4.30
6431 7397 4.150994 GCCCCATTTCGGCGAATA 57.849 55.556 24.33 14.37 36.47 1.75
6432 7398 2.410466 GCCCCATTTCGGCGAATAA 58.590 52.632 24.33 10.09 36.47 1.40
6433 7399 0.741915 GCCCCATTTCGGCGAATAAA 59.258 50.000 24.33 9.26 36.47 1.40
6434 7400 1.269051 GCCCCATTTCGGCGAATAAAG 60.269 52.381 24.33 12.56 36.47 1.85
6435 7401 1.336755 CCCCATTTCGGCGAATAAAGG 59.663 52.381 24.33 20.18 0.00 3.11
6436 7402 1.336755 CCCATTTCGGCGAATAAAGGG 59.663 52.381 24.33 24.45 36.53 3.95
6437 7403 1.269051 CCATTTCGGCGAATAAAGGGC 60.269 52.381 24.33 0.00 30.70 5.19
6438 7404 1.029681 ATTTCGGCGAATAAAGGGCC 58.970 50.000 24.33 0.00 43.42 5.80
6439 7405 1.033202 TTTCGGCGAATAAAGGGCCC 61.033 55.000 24.33 16.46 43.99 5.80
6440 7406 3.276846 CGGCGAATAAAGGGCCCG 61.277 66.667 18.44 3.05 43.99 6.13
6441 7407 2.124445 GGCGAATAAAGGGCCCGT 60.124 61.111 18.44 11.44 41.01 5.28
6442 7408 1.146707 GGCGAATAAAGGGCCCGTA 59.853 57.895 18.44 13.78 41.01 4.02
6443 7409 0.250597 GGCGAATAAAGGGCCCGTAT 60.251 55.000 18.44 15.61 41.01 3.06
6444 7410 0.872388 GCGAATAAAGGGCCCGTATG 59.128 55.000 18.44 8.60 0.00 2.39
6445 7411 1.519408 CGAATAAAGGGCCCGTATGG 58.481 55.000 18.44 10.24 37.09 2.74
6456 7422 3.814577 CCGTATGGGCGAGAATAGG 57.185 57.895 0.00 0.00 0.00 2.57
6457 7423 0.389948 CCGTATGGGCGAGAATAGGC 60.390 60.000 0.00 0.00 34.95 3.93
6464 7430 2.789409 GGCGAGAATAGGCCCATATT 57.211 50.000 0.00 0.00 43.64 1.28
6465 7431 2.633488 GGCGAGAATAGGCCCATATTC 58.367 52.381 14.20 14.20 43.64 1.75
6466 7432 2.271800 GCGAGAATAGGCCCATATTCG 58.728 52.381 15.47 13.38 43.79 3.34
6467 7433 2.893637 CGAGAATAGGCCCATATTCGG 58.106 52.381 15.47 10.10 43.79 4.30
6468 7434 2.633488 GAGAATAGGCCCATATTCGGC 58.367 52.381 15.47 10.24 43.79 5.54
6473 7439 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
6474 7440 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
6475 7441 1.782028 GCCCATATTCGGCGTGGTTC 61.782 60.000 6.85 0.00 36.47 3.62
6476 7442 1.495584 CCCATATTCGGCGTGGTTCG 61.496 60.000 6.85 0.00 43.12 3.95
6485 7451 3.103911 CGTGGTTCGCCGTGTCTC 61.104 66.667 0.00 0.00 41.18 3.36
6486 7452 3.103911 GTGGTTCGCCGTGTCTCG 61.104 66.667 0.00 0.00 41.18 4.04
6495 7461 3.856508 CGTGTCTCGGCGTTCAAT 58.143 55.556 6.85 0.00 35.71 2.57
6496 7462 2.150424 CGTGTCTCGGCGTTCAATT 58.850 52.632 6.85 0.00 35.71 2.32
6497 7463 1.342555 CGTGTCTCGGCGTTCAATTA 58.657 50.000 6.85 0.00 35.71 1.40
6498 7464 1.924524 CGTGTCTCGGCGTTCAATTAT 59.075 47.619 6.85 0.00 35.71 1.28
6499 7465 2.034842 CGTGTCTCGGCGTTCAATTATC 60.035 50.000 6.85 0.00 35.71 1.75
6500 7466 2.927477 GTGTCTCGGCGTTCAATTATCA 59.073 45.455 6.85 0.00 0.00 2.15
6501 7467 3.369756 GTGTCTCGGCGTTCAATTATCAA 59.630 43.478 6.85 0.00 0.00 2.57
6502 7468 3.369756 TGTCTCGGCGTTCAATTATCAAC 59.630 43.478 6.85 0.00 0.00 3.18
6503 7469 3.369756 GTCTCGGCGTTCAATTATCAACA 59.630 43.478 6.85 0.00 0.00 3.33
6504 7470 3.369756 TCTCGGCGTTCAATTATCAACAC 59.630 43.478 6.85 0.00 0.00 3.32
6505 7471 3.067833 TCGGCGTTCAATTATCAACACA 58.932 40.909 6.85 0.00 0.00 3.72
6506 7472 3.498777 TCGGCGTTCAATTATCAACACAA 59.501 39.130 6.85 0.00 0.00 3.33
6507 7473 4.155099 TCGGCGTTCAATTATCAACACAAT 59.845 37.500 6.85 0.00 0.00 2.71
6508 7474 4.856487 CGGCGTTCAATTATCAACACAATT 59.144 37.500 0.00 0.00 0.00 2.32
6509 7475 5.344665 CGGCGTTCAATTATCAACACAATTT 59.655 36.000 0.00 0.00 0.00 1.82
6510 7476 6.128956 CGGCGTTCAATTATCAACACAATTTT 60.129 34.615 0.00 0.00 0.00 1.82
6511 7477 7.568497 CGGCGTTCAATTATCAACACAATTTTT 60.568 33.333 0.00 0.00 0.00 1.94
6536 7502 9.904198 TTTCTTATCACATATTTCATCACAGGA 57.096 29.630 0.00 0.00 0.00 3.86
6537 7503 9.904198 TTCTTATCACATATTTCATCACAGGAA 57.096 29.630 0.00 0.00 0.00 3.36
6538 7504 9.904198 TCTTATCACATATTTCATCACAGGAAA 57.096 29.630 0.00 0.00 38.49 3.13
6541 7507 8.756486 ATCACATATTTCATCACAGGAAATCA 57.244 30.769 3.86 0.00 42.35 2.57
6542 7508 8.578448 TCACATATTTCATCACAGGAAATCAA 57.422 30.769 3.86 0.00 42.35 2.57
6543 7509 9.022884 TCACATATTTCATCACAGGAAATCAAA 57.977 29.630 3.86 0.00 42.35 2.69
6544 7510 9.811995 CACATATTTCATCACAGGAAATCAAAT 57.188 29.630 3.86 0.00 42.35 2.32
6550 7516 8.634335 TTCATCACAGGAAATCAAATACTTCA 57.366 30.769 0.00 0.00 0.00 3.02
6551 7517 8.634335 TCATCACAGGAAATCAAATACTTCAA 57.366 30.769 0.00 0.00 0.00 2.69
6552 7518 9.076781 TCATCACAGGAAATCAAATACTTCAAA 57.923 29.630 0.00 0.00 0.00 2.69
6553 7519 9.695526 CATCACAGGAAATCAAATACTTCAAAA 57.304 29.630 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 1.661498 CCGCTCAGCTCTAGTGCAGA 61.661 60.000 18.36 14.45 34.99 4.26
135 136 2.099921 ACATTACACCGCTCAGCTCTAG 59.900 50.000 0.00 0.00 0.00 2.43
173 191 3.089284 AGATTCGGGGGAAAAACATGTC 58.911 45.455 0.00 0.00 0.00 3.06
174 192 2.825532 CAGATTCGGGGGAAAAACATGT 59.174 45.455 0.00 0.00 0.00 3.21
184 202 0.683973 CCATCTCTCAGATTCGGGGG 59.316 60.000 0.00 0.00 31.32 5.40
186 204 1.709578 TCCCATCTCTCAGATTCGGG 58.290 55.000 3.45 3.45 38.60 5.14
225 243 1.915141 CAATCAGGCAAGTGGAACCT 58.085 50.000 0.00 0.00 37.80 3.50
252 270 1.276138 CTGGGGCAAGGACAAATTTCC 59.724 52.381 0.00 0.00 35.66 3.13
292 370 1.066286 ACACTGCTTCAGATCTCAGGC 60.066 52.381 12.37 4.02 35.18 4.85
414 493 4.939439 TGGATGAGAATGATCACAACAGTG 59.061 41.667 0.00 0.00 26.60 3.66
558 643 1.765230 TAAAACCAAACACTGCCGGT 58.235 45.000 1.90 0.00 0.00 5.28
561 646 4.944048 ACTTGATAAAACCAAACACTGCC 58.056 39.130 0.00 0.00 0.00 4.85
576 661 3.504906 ACTTCACCGACGAGAACTTGATA 59.495 43.478 0.00 0.00 0.00 2.15
708 793 0.244721 GGAATTGCAGGGAGTTGTGC 59.755 55.000 0.00 0.00 40.29 4.57
787 872 3.841643 ACAAAATAGCTGCTGAACATGC 58.158 40.909 13.43 0.00 0.00 4.06
865 957 3.001414 GCGGAGAAAAGAAGAGGTAACC 58.999 50.000 0.00 0.00 37.17 2.85
866 958 3.927758 GAGCGGAGAAAAGAAGAGGTAAC 59.072 47.826 0.00 0.00 0.00 2.50
867 959 3.576982 TGAGCGGAGAAAAGAAGAGGTAA 59.423 43.478 0.00 0.00 0.00 2.85
868 960 3.162666 TGAGCGGAGAAAAGAAGAGGTA 58.837 45.455 0.00 0.00 0.00 3.08
869 961 1.971357 TGAGCGGAGAAAAGAAGAGGT 59.029 47.619 0.00 0.00 0.00 3.85
870 962 2.028567 ACTGAGCGGAGAAAAGAAGAGG 60.029 50.000 0.00 0.00 0.00 3.69
874 966 2.872245 CAACACTGAGCGGAGAAAAGAA 59.128 45.455 0.00 0.00 0.00 2.52
1438 1741 9.838339 CCTCCATCCCATAATATAAGATGTTAC 57.162 37.037 9.45 0.00 33.95 2.50
1554 1858 7.041848 GCTGCAATGTAAAGTTTTGAAGGAAAT 60.042 33.333 0.00 0.00 0.00 2.17
2063 2409 3.983044 AAGGAGACCATGGTACTGAAC 57.017 47.619 19.80 3.82 0.00 3.18
2410 2756 4.908601 TTTTCCTAATGACCAGAGCTCA 57.091 40.909 17.77 0.00 0.00 4.26
2466 2813 7.333528 TGACAGCTGAAATATCCCAAATAAC 57.666 36.000 23.35 0.00 0.00 1.89
2693 3040 6.773976 TGGCACTTTTCCTTTGGATATAAG 57.226 37.500 0.00 0.00 0.00 1.73
2699 3046 4.898861 AGTAATTGGCACTTTTCCTTTGGA 59.101 37.500 0.00 0.00 0.00 3.53
3010 3359 2.359848 ACCTTTGGGTTTACTCGCAAAC 59.640 45.455 5.15 0.00 44.73 2.93
3174 3527 9.426837 CATGAAAAGAACACCACAATGAAATAT 57.573 29.630 0.00 0.00 0.00 1.28
3229 3582 7.390162 TGAGTGTGTGCATTTCATTACTAATGA 59.610 33.333 7.31 7.31 45.68 2.57
3232 3585 7.174772 ACATGAGTGTGTGCATTTCATTACTAA 59.825 33.333 0.00 0.00 37.14 2.24
3233 3586 6.654582 ACATGAGTGTGTGCATTTCATTACTA 59.345 34.615 0.00 0.00 37.14 1.82
3234 3587 5.474532 ACATGAGTGTGTGCATTTCATTACT 59.525 36.000 0.00 0.00 37.14 2.24
3237 3590 4.859304 ACATGAGTGTGTGCATTTCATT 57.141 36.364 0.00 0.00 37.14 2.57
3238 3591 4.859304 AACATGAGTGTGTGCATTTCAT 57.141 36.364 0.00 0.00 38.92 2.57
3239 3592 4.142204 ACAAACATGAGTGTGTGCATTTCA 60.142 37.500 0.00 0.00 45.72 2.69
3240 3593 4.362279 ACAAACATGAGTGTGTGCATTTC 58.638 39.130 0.00 0.00 45.72 2.17
3241 3594 4.389890 ACAAACATGAGTGTGTGCATTT 57.610 36.364 0.00 0.00 45.72 2.32
3244 3597 3.865011 AAACAAACATGAGTGTGTGCA 57.135 38.095 0.00 0.00 45.44 4.57
3245 3598 3.925913 ACAAAACAAACATGAGTGTGTGC 59.074 39.130 0.00 0.00 45.44 4.57
3246 3599 4.922692 ACACAAAACAAACATGAGTGTGTG 59.077 37.500 20.02 20.02 45.44 3.82
3248 3601 6.033407 GTGTACACAAAACAAACATGAGTGTG 59.967 38.462 21.14 5.31 38.92 3.82
3249 3602 6.090129 GTGTACACAAAACAAACATGAGTGT 58.910 36.000 21.14 0.00 41.15 3.55
3250 3603 6.089476 TGTGTACACAAAACAAACATGAGTG 58.911 36.000 26.07 0.00 38.56 3.51
3519 3877 4.440663 GCATTAACAGAGGGGAAAATCTGC 60.441 45.833 2.23 0.00 45.56 4.26
3622 3983 3.403038 GACCTGTAGACATGTTGCTGTT 58.597 45.455 0.00 0.00 0.00 3.16
3822 4183 8.926710 ACATTAAGTTTCTCTTCAATAGTCACG 58.073 33.333 0.00 0.00 37.56 4.35
4016 4378 6.042781 AGGACCAGTCTGTTCAATTAGTGTAA 59.957 38.462 0.00 0.00 0.00 2.41
4053 4415 9.859427 CAAGAATTATTTTAGCTGGAATGTTGA 57.141 29.630 0.00 0.00 0.00 3.18
4421 4785 1.511613 TCATCCCCTGGATTCTCCAC 58.488 55.000 0.00 0.00 42.67 4.02
4842 5208 7.282224 CGACCATATTATCAAAAAGGGAGTGAA 59.718 37.037 0.00 0.00 0.00 3.18
4843 5209 6.765989 CGACCATATTATCAAAAAGGGAGTGA 59.234 38.462 0.00 0.00 0.00 3.41
4931 5298 5.654650 TGAAACACCAGTTGTAAGGACAATT 59.345 36.000 0.00 0.00 46.98 2.32
4957 5324 4.737855 TCAATGTCCACTCCTTACTAGC 57.262 45.455 0.00 0.00 0.00 3.42
4979 5346 9.881649 CATATAGGATGCTAGAGCTTTATTTCA 57.118 33.333 0.00 0.00 42.66 2.69
5034 5681 4.493545 CGACGAGCAATAAAATGTACCACC 60.494 45.833 0.00 0.00 0.00 4.61
5040 5687 3.058570 TGCAACGACGAGCAATAAAATGT 60.059 39.130 15.19 0.00 37.90 2.71
5062 5716 0.666913 GCTGATCGCCATTGCATTCT 59.333 50.000 0.00 0.00 37.32 2.40
5076 5730 4.384056 AGCAACGAATATAAGCAGCTGAT 58.616 39.130 20.43 8.90 0.00 2.90
5092 5746 3.070018 ACAATCAGGAAGAGAAGCAACG 58.930 45.455 0.00 0.00 0.00 4.10
5109 5763 7.398024 AGCACAAGGAGAAGTTAGATAACAAT 58.602 34.615 5.59 0.00 38.62 2.71
5239 5894 6.097981 ACAGGATTTAACTAGGTAGTAGCCAC 59.902 42.308 8.47 0.00 34.99 5.01
5241 5896 6.728089 ACAGGATTTAACTAGGTAGTAGCC 57.272 41.667 0.00 0.00 34.99 3.93
5267 5922 6.150976 TGAGAAGGCATAAACATTGGTTAGTG 59.849 38.462 0.07 1.07 35.82 2.74
5407 6062 7.883229 AAAAACAGTCAAAACCAAACAGTAG 57.117 32.000 0.00 0.00 0.00 2.57
5466 6121 5.067805 AGTGACCTGACATTTTTCCAGAAAC 59.932 40.000 0.00 0.00 0.00 2.78
5480 6135 3.274288 GGATGAATTCCAGTGACCTGAC 58.726 50.000 2.27 0.00 44.74 3.51
5686 6342 4.819769 TGCTTTTATTTCTCAATGGTGCC 58.180 39.130 0.00 0.00 0.00 5.01
5742 6398 3.885484 AACAGAAACAGCAATCTCACG 57.115 42.857 0.00 0.00 0.00 4.35
5749 6405 4.572795 TCATGTACGAAACAGAAACAGCAA 59.427 37.500 0.00 0.00 42.70 3.91
5790 6446 1.209019 AGTGGAGCAGATCGCAAAGAT 59.791 47.619 11.20 0.00 46.13 2.40
5799 6455 6.069963 AGTGAAATTTAGGTAGTGGAGCAGAT 60.070 38.462 0.00 0.00 0.00 2.90
5823 6479 8.358148 TCGTTCCCTACTTATTCTGCTTAATAG 58.642 37.037 0.00 0.00 0.00 1.73
5893 6549 9.639601 CAGAACACATCACACTACTAATAGAAA 57.360 33.333 0.00 0.00 32.23 2.52
5894 6550 7.759886 GCAGAACACATCACACTACTAATAGAA 59.240 37.037 0.00 0.00 32.23 2.10
5895 6551 7.122799 AGCAGAACACATCACACTACTAATAGA 59.877 37.037 0.00 0.00 32.23 1.98
5896 6552 7.261325 AGCAGAACACATCACACTACTAATAG 58.739 38.462 0.00 0.00 34.25 1.73
5897 6553 7.170393 AGCAGAACACATCACACTACTAATA 57.830 36.000 0.00 0.00 0.00 0.98
5898 6554 6.042638 AGCAGAACACATCACACTACTAAT 57.957 37.500 0.00 0.00 0.00 1.73
5899 6555 5.468540 AGCAGAACACATCACACTACTAA 57.531 39.130 0.00 0.00 0.00 2.24
5900 6556 5.468540 AAGCAGAACACATCACACTACTA 57.531 39.130 0.00 0.00 0.00 1.82
5901 6557 4.310769 GAAGCAGAACACATCACACTACT 58.689 43.478 0.00 0.00 0.00 2.57
5902 6558 3.121944 CGAAGCAGAACACATCACACTAC 59.878 47.826 0.00 0.00 0.00 2.73
5903 6559 3.005367 TCGAAGCAGAACACATCACACTA 59.995 43.478 0.00 0.00 0.00 2.74
5904 6560 2.138320 CGAAGCAGAACACATCACACT 58.862 47.619 0.00 0.00 0.00 3.55
5905 6561 2.135139 TCGAAGCAGAACACATCACAC 58.865 47.619 0.00 0.00 0.00 3.82
5906 6562 2.524569 TCGAAGCAGAACACATCACA 57.475 45.000 0.00 0.00 0.00 3.58
5915 6571 0.812014 TTGTGCGGTTCGAAGCAGAA 60.812 50.000 25.46 19.98 44.70 3.02
5916 6572 1.227409 TTGTGCGGTTCGAAGCAGA 60.227 52.632 25.46 15.49 44.70 4.26
5917 6573 1.082756 GTTGTGCGGTTCGAAGCAG 60.083 57.895 25.46 18.47 44.70 4.24
5918 6574 2.539338 GGTTGTGCGGTTCGAAGCA 61.539 57.895 25.46 17.01 41.55 3.91
5919 6575 2.251371 GGTTGTGCGGTTCGAAGC 59.749 61.111 17.24 17.24 0.00 3.86
5920 6576 1.157870 ACTGGTTGTGCGGTTCGAAG 61.158 55.000 0.00 0.00 0.00 3.79
5921 6577 0.745128 AACTGGTTGTGCGGTTCGAA 60.745 50.000 0.00 0.00 0.00 3.71
5922 6578 1.153329 AACTGGTTGTGCGGTTCGA 60.153 52.632 0.00 0.00 0.00 3.71
5923 6579 1.010125 CAACTGGTTGTGCGGTTCG 60.010 57.895 5.41 0.00 35.92 3.95
5924 6580 0.307760 CTCAACTGGTTGTGCGGTTC 59.692 55.000 12.34 0.00 41.16 3.62
5925 6581 0.393808 ACTCAACTGGTTGTGCGGTT 60.394 50.000 12.34 0.00 41.16 4.44
5926 6582 0.393808 AACTCAACTGGTTGTGCGGT 60.394 50.000 12.34 6.05 41.16 5.68
5927 6583 1.263217 GTAACTCAACTGGTTGTGCGG 59.737 52.381 12.34 5.56 41.16 5.69
5928 6584 2.210116 AGTAACTCAACTGGTTGTGCG 58.790 47.619 12.34 6.15 41.16 5.34
5929 6585 4.632538 AAAGTAACTCAACTGGTTGTGC 57.367 40.909 12.34 0.00 41.16 4.57
5930 6586 6.436843 AGAAAAGTAACTCAACTGGTTGTG 57.563 37.500 12.34 12.24 41.16 3.33
5931 6587 7.462571 AAAGAAAAGTAACTCAACTGGTTGT 57.537 32.000 12.34 0.00 41.16 3.32
5932 6588 8.244113 AGAAAAGAAAAGTAACTCAACTGGTTG 58.756 33.333 7.10 7.10 41.71 3.77
5933 6589 8.349568 AGAAAAGAAAAGTAACTCAACTGGTT 57.650 30.769 0.00 0.00 0.00 3.67
5934 6590 7.829706 AGAGAAAAGAAAAGTAACTCAACTGGT 59.170 33.333 0.00 0.00 0.00 4.00
5935 6591 8.214721 AGAGAAAAGAAAAGTAACTCAACTGG 57.785 34.615 0.00 0.00 0.00 4.00
5940 6596 9.886132 ACACTAAGAGAAAAGAAAAGTAACTCA 57.114 29.630 0.00 0.00 0.00 3.41
6014 6980 8.814038 AGATCAATTTACCTGAATGCTAAAGT 57.186 30.769 0.00 0.00 0.00 2.66
6033 6999 8.956426 GGAAATGGTAGTGTTTGATAAGATCAA 58.044 33.333 0.00 0.00 46.77 2.57
6089 7055 4.397417 AGAGATCATAACAACTTGCAAGCC 59.603 41.667 26.27 3.21 0.00 4.35
6103 7069 1.133482 TGTGGGCCGAGAGAGATCATA 60.133 52.381 0.00 0.00 0.00 2.15
6116 7082 1.908299 CAGGGGAAAGTTGTGGGCC 60.908 63.158 0.00 0.00 0.00 5.80
6122 7088 1.703411 TTTCAGCCAGGGGAAAGTTG 58.297 50.000 0.00 0.00 0.00 3.16
6134 7100 0.179073 TAGGAGCGAGCATTTCAGCC 60.179 55.000 0.00 0.00 34.23 4.85
6137 7103 0.530744 ACGTAGGAGCGAGCATTTCA 59.469 50.000 0.00 0.00 35.59 2.69
6146 7112 0.171007 TCCGGTAAAACGTAGGAGCG 59.829 55.000 0.00 7.80 37.94 5.03
6147 7113 2.094545 TCTTCCGGTAAAACGTAGGAGC 60.095 50.000 0.00 0.00 32.03 4.70
6149 7115 3.320541 TGTTCTTCCGGTAAAACGTAGGA 59.679 43.478 0.00 0.00 0.00 2.94
6192 7158 6.749578 CACGGTAGAATGCTATAGATGATGAC 59.250 42.308 3.21 0.00 0.00 3.06
6195 7161 5.952347 TCCACGGTAGAATGCTATAGATGAT 59.048 40.000 3.21 0.00 0.00 2.45
6198 7164 6.493802 TCTTTCCACGGTAGAATGCTATAGAT 59.506 38.462 3.21 0.00 0.00 1.98
6203 7169 4.501071 GTTCTTTCCACGGTAGAATGCTA 58.499 43.478 6.66 0.00 31.25 3.49
6216 7182 3.611025 AAGGAATGGTGGTTCTTTCCA 57.389 42.857 10.66 0.00 41.01 3.53
6217 7183 6.605471 ATTAAAGGAATGGTGGTTCTTTCC 57.395 37.500 0.00 0.00 39.71 3.13
6233 7199 8.211629 ACAGTAGAATAAGCACCCTATTAAAGG 58.788 37.037 0.00 0.00 46.09 3.11
6234 7200 9.046296 CACAGTAGAATAAGCACCCTATTAAAG 57.954 37.037 0.00 0.00 0.00 1.85
6235 7201 7.990886 CCACAGTAGAATAAGCACCCTATTAAA 59.009 37.037 0.00 0.00 0.00 1.52
6236 7202 7.346175 TCCACAGTAGAATAAGCACCCTATTAA 59.654 37.037 0.00 0.00 0.00 1.40
6237 7203 6.842280 TCCACAGTAGAATAAGCACCCTATTA 59.158 38.462 0.00 0.00 0.00 0.98
6238 7204 5.665812 TCCACAGTAGAATAAGCACCCTATT 59.334 40.000 0.00 0.00 0.00 1.73
6239 7205 5.216622 TCCACAGTAGAATAAGCACCCTAT 58.783 41.667 0.00 0.00 0.00 2.57
6240 7206 4.616553 TCCACAGTAGAATAAGCACCCTA 58.383 43.478 0.00 0.00 0.00 3.53
6241 7207 3.450904 TCCACAGTAGAATAAGCACCCT 58.549 45.455 0.00 0.00 0.00 4.34
6242 7208 3.906720 TCCACAGTAGAATAAGCACCC 57.093 47.619 0.00 0.00 0.00 4.61
6243 7209 4.870991 GTCTTCCACAGTAGAATAAGCACC 59.129 45.833 0.00 0.00 0.00 5.01
6244 7210 4.870991 GGTCTTCCACAGTAGAATAAGCAC 59.129 45.833 0.00 0.00 0.00 4.40
6245 7211 4.530553 TGGTCTTCCACAGTAGAATAAGCA 59.469 41.667 0.00 0.00 39.03 3.91
6246 7212 5.086104 TGGTCTTCCACAGTAGAATAAGC 57.914 43.478 0.00 0.00 39.03 3.09
6247 7213 5.875359 GGTTGGTCTTCCACAGTAGAATAAG 59.125 44.000 0.00 0.00 44.22 1.73
6248 7214 5.546499 AGGTTGGTCTTCCACAGTAGAATAA 59.454 40.000 0.00 0.00 44.22 1.40
6249 7215 5.046591 CAGGTTGGTCTTCCACAGTAGAATA 60.047 44.000 0.00 0.00 44.22 1.75
6250 7216 3.910627 AGGTTGGTCTTCCACAGTAGAAT 59.089 43.478 0.00 0.00 44.22 2.40
6251 7217 3.071023 CAGGTTGGTCTTCCACAGTAGAA 59.929 47.826 0.00 0.00 44.22 2.10
6252 7218 2.632996 CAGGTTGGTCTTCCACAGTAGA 59.367 50.000 0.00 0.00 44.22 2.59
6253 7219 2.872038 GCAGGTTGGTCTTCCACAGTAG 60.872 54.545 0.00 0.00 44.22 2.57
6254 7220 1.071699 GCAGGTTGGTCTTCCACAGTA 59.928 52.381 0.00 0.00 44.22 2.74
6255 7221 0.179018 GCAGGTTGGTCTTCCACAGT 60.179 55.000 0.00 0.00 44.22 3.55
6256 7222 0.890996 GGCAGGTTGGTCTTCCACAG 60.891 60.000 0.00 0.00 44.22 3.66
6257 7223 1.150536 GGCAGGTTGGTCTTCCACA 59.849 57.895 0.00 0.00 44.22 4.17
6258 7224 0.178990 AAGGCAGGTTGGTCTTCCAC 60.179 55.000 0.00 0.00 44.22 4.02
6259 7225 1.440618 TAAGGCAGGTTGGTCTTCCA 58.559 50.000 0.00 0.00 42.66 3.53
6260 7226 2.039879 TCTTAAGGCAGGTTGGTCTTCC 59.960 50.000 1.85 0.00 34.03 3.46
6261 7227 3.339141 CTCTTAAGGCAGGTTGGTCTTC 58.661 50.000 1.85 0.00 34.03 2.87
6262 7228 2.553247 GCTCTTAAGGCAGGTTGGTCTT 60.553 50.000 1.85 0.00 36.53 3.01
6263 7229 1.003696 GCTCTTAAGGCAGGTTGGTCT 59.996 52.381 1.85 0.00 0.00 3.85
6264 7230 1.271379 TGCTCTTAAGGCAGGTTGGTC 60.271 52.381 12.79 0.00 34.56 4.02
6265 7231 0.771127 TGCTCTTAAGGCAGGTTGGT 59.229 50.000 12.79 0.00 34.56 3.67
6266 7232 2.019984 GATGCTCTTAAGGCAGGTTGG 58.980 52.381 19.07 0.00 43.15 3.77
6267 7233 2.941720 GAGATGCTCTTAAGGCAGGTTG 59.058 50.000 19.07 0.00 43.15 3.77
6268 7234 2.092699 GGAGATGCTCTTAAGGCAGGTT 60.093 50.000 19.07 10.24 43.15 3.50
6269 7235 1.488393 GGAGATGCTCTTAAGGCAGGT 59.512 52.381 19.07 11.42 43.15 4.00
6270 7236 1.487976 TGGAGATGCTCTTAAGGCAGG 59.512 52.381 19.07 3.92 43.15 4.85
6271 7237 2.836262 CTGGAGATGCTCTTAAGGCAG 58.164 52.381 19.07 5.94 43.15 4.85
6272 7238 1.134280 GCTGGAGATGCTCTTAAGGCA 60.134 52.381 17.36 17.36 44.05 4.75
6273 7239 1.592064 GCTGGAGATGCTCTTAAGGC 58.408 55.000 1.85 5.85 0.00 4.35
6274 7240 1.539929 CGGCTGGAGATGCTCTTAAGG 60.540 57.143 1.85 0.00 0.00 2.69
6275 7241 1.137872 ACGGCTGGAGATGCTCTTAAG 59.862 52.381 0.00 0.00 0.00 1.85
6276 7242 1.195115 ACGGCTGGAGATGCTCTTAA 58.805 50.000 0.00 0.00 0.00 1.85
6277 7243 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
6278 7244 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
6279 7245 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
6280 7246 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
6300 7266 1.681264 GATTTTTATGCGTCCTGGGGG 59.319 52.381 0.00 0.00 0.00 5.40
6301 7267 1.333619 CGATTTTTATGCGTCCTGGGG 59.666 52.381 0.00 0.00 0.00 4.96
6302 7268 1.268539 GCGATTTTTATGCGTCCTGGG 60.269 52.381 0.00 0.00 0.00 4.45
6303 7269 1.268539 GGCGATTTTTATGCGTCCTGG 60.269 52.381 0.00 0.00 0.00 4.45
6304 7270 1.268539 GGGCGATTTTTATGCGTCCTG 60.269 52.381 0.00 0.00 45.64 3.86
6305 7271 1.021968 GGGCGATTTTTATGCGTCCT 58.978 50.000 0.00 0.00 45.64 3.85
6306 7272 3.544615 GGGCGATTTTTATGCGTCC 57.455 52.632 0.00 0.00 42.93 4.79
6307 7273 0.030235 GGGGGCGATTTTTATGCGTC 59.970 55.000 0.00 0.00 0.00 5.19
6308 7274 0.395173 AGGGGGCGATTTTTATGCGT 60.395 50.000 0.00 0.00 0.00 5.24
6309 7275 0.030638 CAGGGGGCGATTTTTATGCG 59.969 55.000 0.00 0.00 0.00 4.73
6310 7276 0.389025 CCAGGGGGCGATTTTTATGC 59.611 55.000 0.00 0.00 0.00 3.14
6311 7277 1.039856 CCCAGGGGGCGATTTTTATG 58.960 55.000 0.00 0.00 35.35 1.90
6312 7278 3.531821 CCCAGGGGGCGATTTTTAT 57.468 52.632 0.00 0.00 35.35 1.40
6333 7299 3.554692 GATTGTGTCGCCGGCTCG 61.555 66.667 26.68 10.37 0.00 5.03
6334 7300 3.554692 CGATTGTGTCGCCGGCTC 61.555 66.667 26.68 17.76 44.33 4.70
6342 7308 3.499737 CCCAGCGCCGATTGTGTC 61.500 66.667 2.29 0.00 0.00 3.67
6364 7330 3.723348 GACGACTGGGCGCAAACC 61.723 66.667 10.83 0.93 33.86 3.27
6365 7331 4.072088 CGACGACTGGGCGCAAAC 62.072 66.667 10.83 0.00 33.86 2.93
6372 7338 3.528370 CTAGGGGCGACGACTGGG 61.528 72.222 0.00 0.00 0.00 4.45
6373 7339 3.528370 CCTAGGGGCGACGACTGG 61.528 72.222 0.00 0.00 0.00 4.00
6383 7349 0.602905 CTAATTTCGGCGCCTAGGGG 60.603 60.000 26.68 21.24 0.00 4.79
6384 7350 1.228657 GCTAATTTCGGCGCCTAGGG 61.229 60.000 26.68 9.07 0.00 3.53
6385 7351 1.228657 GGCTAATTTCGGCGCCTAGG 61.229 60.000 26.68 9.50 39.42 3.02
6386 7352 1.557443 CGGCTAATTTCGGCGCCTAG 61.557 60.000 26.68 19.33 43.31 3.02
6387 7353 1.593209 CGGCTAATTTCGGCGCCTA 60.593 57.895 26.68 11.79 43.31 3.93
6388 7354 2.895372 CGGCTAATTTCGGCGCCT 60.895 61.111 26.68 7.77 43.31 5.52
6392 7358 2.160813 TGAAAAGTCGGCTAATTTCGGC 59.839 45.455 9.08 0.00 35.15 5.54
6393 7359 4.003519 CTGAAAAGTCGGCTAATTTCGG 57.996 45.455 8.26 8.26 35.15 4.30
6403 7369 1.202348 GAAATGGGGCTGAAAAGTCGG 59.798 52.381 0.00 0.00 0.00 4.79
6404 7370 1.135689 CGAAATGGGGCTGAAAAGTCG 60.136 52.381 0.00 0.00 0.00 4.18
6405 7371 1.202348 CCGAAATGGGGCTGAAAAGTC 59.798 52.381 0.00 0.00 0.00 3.01
6406 7372 1.256812 CCGAAATGGGGCTGAAAAGT 58.743 50.000 0.00 0.00 0.00 2.66
6416 7382 1.336755 CCCTTTATTCGCCGAAATGGG 59.663 52.381 2.60 9.29 38.63 4.00
6417 7383 1.269051 GCCCTTTATTCGCCGAAATGG 60.269 52.381 2.60 3.86 42.50 3.16
6418 7384 1.269051 GGCCCTTTATTCGCCGAAATG 60.269 52.381 2.60 0.00 31.92 2.32
6419 7385 1.029681 GGCCCTTTATTCGCCGAAAT 58.970 50.000 2.60 0.00 31.92 2.17
6420 7386 1.033202 GGGCCCTTTATTCGCCGAAA 61.033 55.000 17.04 0.00 43.99 3.46
6421 7387 1.452470 GGGCCCTTTATTCGCCGAA 60.452 57.895 17.04 0.33 43.99 4.30
6422 7388 2.191109 GGGCCCTTTATTCGCCGA 59.809 61.111 17.04 0.00 43.99 5.54
6423 7389 2.647680 TACGGGCCCTTTATTCGCCG 62.648 60.000 22.43 4.50 43.99 6.46
6424 7390 0.250597 ATACGGGCCCTTTATTCGCC 60.251 55.000 22.43 0.00 42.23 5.54
6425 7391 0.872388 CATACGGGCCCTTTATTCGC 59.128 55.000 22.43 0.00 0.00 4.70
6426 7392 1.519408 CCATACGGGCCCTTTATTCG 58.481 55.000 22.43 7.03 0.00 3.34
6438 7404 0.389948 GCCTATTCTCGCCCATACGG 60.390 60.000 0.00 0.00 0.00 4.02
6439 7405 0.389948 GGCCTATTCTCGCCCATACG 60.390 60.000 0.00 0.00 39.39 3.06
6440 7406 3.534721 GGCCTATTCTCGCCCATAC 57.465 57.895 0.00 0.00 39.39 2.39
6445 7411 2.633488 GAATATGGGCCTATTCTCGCC 58.367 52.381 7.02 0.00 44.92 5.54
6446 7412 2.271800 CGAATATGGGCCTATTCTCGC 58.728 52.381 22.26 7.55 36.42 5.03
6447 7413 2.893637 CCGAATATGGGCCTATTCTCG 58.106 52.381 19.45 19.45 36.42 4.04
6448 7414 2.633488 GCCGAATATGGGCCTATTCTC 58.367 52.381 22.26 3.45 44.97 2.87
6449 7415 2.789409 GCCGAATATGGGCCTATTCT 57.211 50.000 22.26 0.00 44.97 2.40
6457 7423 1.495584 CGAACCACGCCGAATATGGG 61.496 60.000 0.00 0.00 37.86 4.00
6458 7424 1.931551 CGAACCACGCCGAATATGG 59.068 57.895 0.00 0.00 39.57 2.74
6468 7434 3.103911 GAGACACGGCGAACCACG 61.104 66.667 16.62 0.00 45.66 4.94
6469 7435 3.103911 CGAGACACGGCGAACCAC 61.104 66.667 16.62 0.69 38.46 4.16
6478 7444 1.342555 TAATTGAACGCCGAGACACG 58.657 50.000 0.00 0.00 42.18 4.49
6479 7445 2.927477 TGATAATTGAACGCCGAGACAC 59.073 45.455 0.00 0.00 0.00 3.67
6480 7446 3.239587 TGATAATTGAACGCCGAGACA 57.760 42.857 0.00 0.00 0.00 3.41
6481 7447 3.369756 TGTTGATAATTGAACGCCGAGAC 59.630 43.478 0.00 0.00 0.00 3.36
6482 7448 3.369756 GTGTTGATAATTGAACGCCGAGA 59.630 43.478 0.00 0.00 0.00 4.04
6483 7449 3.124466 TGTGTTGATAATTGAACGCCGAG 59.876 43.478 0.00 0.00 32.66 4.63
6484 7450 3.067833 TGTGTTGATAATTGAACGCCGA 58.932 40.909 0.00 0.00 32.66 5.54
6485 7451 3.463533 TGTGTTGATAATTGAACGCCG 57.536 42.857 0.00 0.00 32.66 6.46
6486 7452 6.704512 AAATTGTGTTGATAATTGAACGCC 57.295 33.333 0.00 0.00 32.66 5.68
6510 7476 9.904198 TCCTGTGATGAAATATGTGATAAGAAA 57.096 29.630 0.00 0.00 0.00 2.52
6511 7477 9.904198 TTCCTGTGATGAAATATGTGATAAGAA 57.096 29.630 0.00 0.00 0.00 2.52
6512 7478 9.904198 TTTCCTGTGATGAAATATGTGATAAGA 57.096 29.630 0.00 0.00 0.00 2.10
6515 7481 9.850198 TGATTTCCTGTGATGAAATATGTGATA 57.150 29.630 0.00 0.00 41.29 2.15
6516 7482 8.756486 TGATTTCCTGTGATGAAATATGTGAT 57.244 30.769 0.00 0.00 41.29 3.06
6517 7483 8.578448 TTGATTTCCTGTGATGAAATATGTGA 57.422 30.769 0.00 0.00 41.29 3.58
6518 7484 9.811995 ATTTGATTTCCTGTGATGAAATATGTG 57.188 29.630 0.00 0.00 41.29 3.21
6524 7490 9.076781 TGAAGTATTTGATTTCCTGTGATGAAA 57.923 29.630 0.00 0.00 36.26 2.69
6525 7491 8.634335 TGAAGTATTTGATTTCCTGTGATGAA 57.366 30.769 0.00 0.00 0.00 2.57
6526 7492 8.634335 TTGAAGTATTTGATTTCCTGTGATGA 57.366 30.769 0.00 0.00 0.00 2.92
6527 7493 9.695526 TTTTGAAGTATTTGATTTCCTGTGATG 57.304 29.630 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.