Multiple sequence alignment - TraesCS1D01G245700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G245700 chr1D 100.000 4878 0 0 1 4878 337223125 337218248 0.000000e+00 9009.0
1 TraesCS1D01G245700 chr1A 91.379 2494 122 41 642 3092 436426794 436424351 0.000000e+00 3328.0
2 TraesCS1D01G245700 chr1A 93.572 1898 70 24 3023 4878 436424127 436422240 0.000000e+00 2782.0
3 TraesCS1D01G245700 chr1A 88.252 349 11 15 304 625 436427661 436427316 1.650000e-104 390.0
4 TraesCS1D01G245700 chr1B 92.974 1594 75 14 1584 3171 452576252 452574690 0.000000e+00 2289.0
5 TraesCS1D01G245700 chr1B 96.095 845 29 4 3203 4047 452574432 452573592 0.000000e+00 1375.0
6 TraesCS1D01G245700 chr1B 95.495 777 28 2 4102 4878 452573570 452572801 0.000000e+00 1234.0
7 TraesCS1D01G245700 chr1B 83.953 1265 83 53 304 1534 452577438 452576260 0.000000e+00 1101.0
8 TraesCS1D01G245700 chr1B 88.511 235 20 4 1548 1779 649828397 649828167 1.340000e-70 278.0
9 TraesCS1D01G245700 chr1B 100.000 40 0 0 3163 3202 452574495 452574456 1.880000e-09 75.0
10 TraesCS1D01G245700 chr7B 83.646 587 68 18 4300 4878 704662721 704663287 1.200000e-145 527.0
11 TraesCS1D01G245700 chr7D 82.968 593 73 15 4294 4878 613692743 613693315 1.210000e-140 510.0
12 TraesCS1D01G245700 chr7D 88.943 407 33 8 1377 1779 262859736 262859338 4.390000e-135 492.0
13 TraesCS1D01G245700 chr7D 82.232 439 69 8 4315 4746 613765429 613765865 2.140000e-98 370.0
14 TraesCS1D01G245700 chr7A 82.770 592 76 15 4294 4878 705417084 705417656 5.630000e-139 505.0
15 TraesCS1D01G245700 chr7A 80.303 594 105 10 4294 4878 705545920 705546510 5.800000e-119 438.0
16 TraesCS1D01G245700 chr7A 76.938 503 93 20 4393 4878 706035460 706035956 1.040000e-66 265.0
17 TraesCS1D01G245700 chr2D 88.452 407 35 8 1377 1779 165690730 165690332 9.500000e-132 481.0
18 TraesCS1D01G245700 chr2D 80.556 144 23 4 1 141 59831016 59830875 6.680000e-19 106.0
19 TraesCS1D01G245700 chr3A 87.961 407 36 9 1377 1779 549256937 549256540 7.390000e-128 468.0
20 TraesCS1D01G245700 chr3B 87.848 395 40 5 1389 1779 761355696 761355306 1.600000e-124 457.0
21 TraesCS1D01G245700 chr5B 87.595 395 41 5 1389 1779 15219948 15219558 7.450000e-123 451.0
22 TraesCS1D01G245700 chr5B 85.401 137 14 5 1 133 599698255 599698389 2.370000e-28 137.0
23 TraesCS1D01G245700 chr2B 87.089 395 42 6 1389 1779 782284174 782283785 5.800000e-119 438.0
24 TraesCS1D01G245700 chr6A 86.241 407 44 7 1377 1779 320935980 320935582 9.700000e-117 431.0
25 TraesCS1D01G245700 chr6A 88.333 60 7 0 72 131 30885861 30885802 6.770000e-09 73.1
26 TraesCS1D01G245700 chr6D 77.675 542 100 18 4348 4878 97520055 97520586 1.320000e-80 311.0
27 TraesCS1D01G245700 chrUn 77.621 496 97 11 4393 4878 293161009 293161500 6.180000e-74 289.0
28 TraesCS1D01G245700 chrUn 79.112 383 68 9 4402 4775 409869114 409868735 2.250000e-63 254.0
29 TraesCS1D01G245700 chr4D 85.612 139 15 4 3 138 505161985 505162121 1.830000e-29 141.0
30 TraesCS1D01G245700 chr6B 81.308 107 17 3 3 107 584307527 584307632 3.130000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G245700 chr1D 337218248 337223125 4877 True 9009.000000 9009 100.000000 1 4878 1 chr1D.!!$R1 4877
1 TraesCS1D01G245700 chr1A 436422240 436427661 5421 True 2166.666667 3328 91.067667 304 4878 3 chr1A.!!$R1 4574
2 TraesCS1D01G245700 chr1B 452572801 452577438 4637 True 1214.800000 2289 93.703400 304 4878 5 chr1B.!!$R2 4574
3 TraesCS1D01G245700 chr7B 704662721 704663287 566 False 527.000000 527 83.646000 4300 4878 1 chr7B.!!$F1 578
4 TraesCS1D01G245700 chr7D 613692743 613693315 572 False 510.000000 510 82.968000 4294 4878 1 chr7D.!!$F1 584
5 TraesCS1D01G245700 chr7A 705417084 705417656 572 False 505.000000 505 82.770000 4294 4878 1 chr7A.!!$F1 584
6 TraesCS1D01G245700 chr7A 705545920 705546510 590 False 438.000000 438 80.303000 4294 4878 1 chr7A.!!$F2 584
7 TraesCS1D01G245700 chr6D 97520055 97520586 531 False 311.000000 311 77.675000 4348 4878 1 chr6D.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.031449 GATGACAGTAGCTCTCGGGC 59.969 60.0 0.0 0.0 0.00 6.13 F
1339 1925 0.039618 TCTGGGGGACTGGATTTTGC 59.960 55.0 0.0 0.0 0.00 3.68 F
1340 1926 0.040204 CTGGGGGACTGGATTTTGCT 59.960 55.0 0.0 0.0 0.00 3.91 F
1341 1927 0.486879 TGGGGGACTGGATTTTGCTT 59.513 50.0 0.0 0.0 0.00 3.91 F
2560 3157 0.749454 GGCTTGAGGCATTCGATGGT 60.749 55.0 0.0 0.0 44.01 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1927 0.324552 CCCCCAATCATGGTCTGCAA 60.325 55.000 0.00 0.00 46.01 4.08 R
3212 4329 0.658897 AACGTTGCAAGTTACACCCG 59.341 50.000 0.00 0.00 0.00 5.28 R
3286 4403 2.552315 ACGGTGTACTGCAAAAGATTGG 59.448 45.455 0.00 0.00 37.02 3.16 R
3292 4409 2.747989 TCAAACACGGTGTACTGCAAAA 59.252 40.909 15.11 0.00 0.00 2.44 R
4226 5378 0.808847 CTTAGGGTAGGGCGCGAAAC 60.809 60.000 12.10 0.44 34.93 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.342279 TTCCCGAGGAGTGCAACG 59.658 61.111 0.00 0.00 45.86 4.10
18 19 2.204461 TTCCCGAGGAGTGCAACGA 61.204 57.895 0.00 0.00 45.86 3.85
19 20 1.750341 TTCCCGAGGAGTGCAACGAA 61.750 55.000 0.00 0.00 45.86 3.85
20 21 1.738099 CCCGAGGAGTGCAACGAAG 60.738 63.158 0.00 0.00 45.86 3.79
21 22 1.289066 CCGAGGAGTGCAACGAAGA 59.711 57.895 0.00 0.00 45.86 2.87
22 23 0.734253 CCGAGGAGTGCAACGAAGAG 60.734 60.000 0.00 0.00 45.86 2.85
23 24 1.347817 CGAGGAGTGCAACGAAGAGC 61.348 60.000 0.00 0.00 45.86 4.09
24 25 1.004440 AGGAGTGCAACGAAGAGCC 60.004 57.895 0.00 0.00 45.86 4.70
25 26 1.301716 GGAGTGCAACGAAGAGCCA 60.302 57.895 0.00 0.00 45.86 4.75
26 27 1.569479 GGAGTGCAACGAAGAGCCAC 61.569 60.000 0.00 0.00 45.86 5.01
27 28 0.880278 GAGTGCAACGAAGAGCCACA 60.880 55.000 0.00 0.00 45.86 4.17
28 29 1.160329 AGTGCAACGAAGAGCCACAC 61.160 55.000 0.00 0.00 45.86 3.82
29 30 2.243957 TGCAACGAAGAGCCACACG 61.244 57.895 0.00 0.00 0.00 4.49
30 31 2.244651 GCAACGAAGAGCCACACGT 61.245 57.895 0.00 0.00 40.64 4.49
31 32 1.564622 CAACGAAGAGCCACACGTG 59.435 57.895 15.48 15.48 38.92 4.49
46 47 4.814294 GTGGCCGCGTCCTACCTG 62.814 72.222 8.05 0.00 0.00 4.00
50 51 4.514577 CCGCGTCCTACCTGGCTG 62.515 72.222 4.92 0.00 35.26 4.85
52 53 4.082523 GCGTCCTACCTGGCTGCA 62.083 66.667 0.50 0.00 36.24 4.41
53 54 2.185350 CGTCCTACCTGGCTGCAG 59.815 66.667 10.11 10.11 35.26 4.41
54 55 2.351244 CGTCCTACCTGGCTGCAGA 61.351 63.158 20.43 0.00 35.26 4.26
55 56 1.519719 GTCCTACCTGGCTGCAGAG 59.480 63.158 20.43 6.68 35.26 3.35
56 57 0.972983 GTCCTACCTGGCTGCAGAGA 60.973 60.000 20.43 0.69 35.26 3.10
57 58 0.252239 TCCTACCTGGCTGCAGAGAA 60.252 55.000 20.43 0.00 35.26 2.87
58 59 0.615331 CCTACCTGGCTGCAGAGAAA 59.385 55.000 20.43 0.00 0.00 2.52
59 60 1.677217 CCTACCTGGCTGCAGAGAAAC 60.677 57.143 20.43 0.00 0.00 2.78
60 61 1.277557 CTACCTGGCTGCAGAGAAACT 59.722 52.381 20.43 0.00 0.00 2.66
61 62 1.352083 ACCTGGCTGCAGAGAAACTA 58.648 50.000 20.43 0.00 0.00 2.24
62 63 1.002544 ACCTGGCTGCAGAGAAACTAC 59.997 52.381 20.43 0.00 0.00 2.73
63 64 1.677217 CCTGGCTGCAGAGAAACTACC 60.677 57.143 20.43 6.86 0.00 3.18
64 65 0.037326 TGGCTGCAGAGAAACTACCG 60.037 55.000 20.43 0.00 0.00 4.02
65 66 0.246635 GGCTGCAGAGAAACTACCGA 59.753 55.000 20.43 0.00 0.00 4.69
66 67 1.134670 GGCTGCAGAGAAACTACCGAT 60.135 52.381 20.43 0.00 0.00 4.18
67 68 1.929836 GCTGCAGAGAAACTACCGATG 59.070 52.381 20.43 0.00 0.00 3.84
68 69 2.417379 GCTGCAGAGAAACTACCGATGA 60.417 50.000 20.43 0.00 0.00 2.92
69 70 3.182967 CTGCAGAGAAACTACCGATGAC 58.817 50.000 8.42 0.00 0.00 3.06
70 71 2.560981 TGCAGAGAAACTACCGATGACA 59.439 45.455 0.00 0.00 0.00 3.58
71 72 3.182967 GCAGAGAAACTACCGATGACAG 58.817 50.000 0.00 0.00 0.00 3.51
72 73 3.367498 GCAGAGAAACTACCGATGACAGT 60.367 47.826 0.00 0.00 0.00 3.55
73 74 4.142447 GCAGAGAAACTACCGATGACAGTA 60.142 45.833 0.00 0.00 0.00 2.74
74 75 5.574082 CAGAGAAACTACCGATGACAGTAG 58.426 45.833 0.00 0.00 41.44 2.57
75 76 4.096682 AGAGAAACTACCGATGACAGTAGC 59.903 45.833 0.00 0.00 39.69 3.58
76 77 4.017808 AGAAACTACCGATGACAGTAGCT 58.982 43.478 0.00 0.00 39.69 3.32
77 78 4.096682 AGAAACTACCGATGACAGTAGCTC 59.903 45.833 0.00 0.00 39.69 4.09
78 79 3.284793 ACTACCGATGACAGTAGCTCT 57.715 47.619 0.00 0.00 39.69 4.09
79 80 3.207778 ACTACCGATGACAGTAGCTCTC 58.792 50.000 0.00 0.00 39.69 3.20
80 81 1.018148 ACCGATGACAGTAGCTCTCG 58.982 55.000 0.00 0.00 0.00 4.04
81 82 0.309302 CCGATGACAGTAGCTCTCGG 59.691 60.000 0.00 0.00 39.58 4.63
82 83 0.309302 CGATGACAGTAGCTCTCGGG 59.691 60.000 0.00 0.00 0.00 5.14
83 84 0.031449 GATGACAGTAGCTCTCGGGC 59.969 60.000 0.00 0.00 0.00 6.13
84 85 1.395826 ATGACAGTAGCTCTCGGGCC 61.396 60.000 0.00 0.00 0.00 5.80
85 86 1.755008 GACAGTAGCTCTCGGGCCT 60.755 63.158 0.84 0.00 0.00 5.19
86 87 2.010582 GACAGTAGCTCTCGGGCCTG 62.011 65.000 4.71 4.71 0.00 4.85
87 88 2.443016 AGTAGCTCTCGGGCCTGG 60.443 66.667 12.87 2.35 0.00 4.45
88 89 4.228567 GTAGCTCTCGGGCCTGGC 62.229 72.222 12.87 11.05 0.00 4.85
101 102 4.351054 CTGGCCCGGGACTGCTTT 62.351 66.667 30.93 0.00 0.00 3.51
102 103 2.931105 TGGCCCGGGACTGCTTTA 60.931 61.111 30.93 1.49 0.00 1.85
103 104 2.353573 GGCCCGGGACTGCTTTAA 59.646 61.111 29.31 0.00 0.00 1.52
104 105 1.749258 GGCCCGGGACTGCTTTAAG 60.749 63.158 29.31 0.00 0.00 1.85
105 106 1.002502 GCCCGGGACTGCTTTAAGT 60.003 57.895 29.31 0.00 0.00 2.24
106 107 0.608308 GCCCGGGACTGCTTTAAGTT 60.608 55.000 29.31 0.00 0.00 2.66
107 108 1.905637 CCCGGGACTGCTTTAAGTTT 58.094 50.000 18.48 0.00 0.00 2.66
108 109 2.235891 CCCGGGACTGCTTTAAGTTTT 58.764 47.619 18.48 0.00 0.00 2.43
109 110 3.414269 CCCGGGACTGCTTTAAGTTTTA 58.586 45.455 18.48 0.00 0.00 1.52
110 111 4.014406 CCCGGGACTGCTTTAAGTTTTAT 58.986 43.478 18.48 0.00 0.00 1.40
111 112 4.142469 CCCGGGACTGCTTTAAGTTTTATG 60.142 45.833 18.48 0.00 0.00 1.90
112 113 4.412207 CGGGACTGCTTTAAGTTTTATGC 58.588 43.478 0.00 0.00 0.00 3.14
113 114 4.412207 GGGACTGCTTTAAGTTTTATGCG 58.588 43.478 0.00 0.00 0.00 4.73
114 115 4.412207 GGACTGCTTTAAGTTTTATGCGG 58.588 43.478 0.00 0.00 0.00 5.69
115 116 4.412207 GACTGCTTTAAGTTTTATGCGGG 58.588 43.478 0.00 0.00 0.00 6.13
116 117 3.179048 CTGCTTTAAGTTTTATGCGGGC 58.821 45.455 0.00 0.00 0.00 6.13
117 118 2.094442 TGCTTTAAGTTTTATGCGGGCC 60.094 45.455 0.00 0.00 0.00 5.80
118 119 2.094442 GCTTTAAGTTTTATGCGGGCCA 60.094 45.455 4.39 0.00 0.00 5.36
119 120 3.615351 GCTTTAAGTTTTATGCGGGCCAA 60.615 43.478 4.39 0.00 0.00 4.52
120 121 3.859411 TTAAGTTTTATGCGGGCCAAG 57.141 42.857 4.39 0.00 0.00 3.61
121 122 1.917872 AAGTTTTATGCGGGCCAAGA 58.082 45.000 4.39 0.00 0.00 3.02
122 123 1.173913 AGTTTTATGCGGGCCAAGAC 58.826 50.000 4.39 0.00 0.00 3.01
123 124 0.179174 GTTTTATGCGGGCCAAGACG 60.179 55.000 4.39 0.00 0.00 4.18
124 125 0.606944 TTTTATGCGGGCCAAGACGT 60.607 50.000 4.39 0.00 0.00 4.34
125 126 1.302383 TTTATGCGGGCCAAGACGTG 61.302 55.000 4.39 0.00 0.00 4.49
133 134 2.111043 CCAAGACGTGGGTGCAGT 59.889 61.111 0.00 0.00 44.64 4.40
134 135 1.961277 CCAAGACGTGGGTGCAGTC 60.961 63.158 0.00 0.00 44.64 3.51
135 136 1.961277 CAAGACGTGGGTGCAGTCC 60.961 63.158 0.00 0.00 35.65 3.85
152 153 4.738998 CCATGCGGGGCTGGTTGA 62.739 66.667 0.00 0.00 0.00 3.18
153 154 3.443045 CATGCGGGGCTGGTTGAC 61.443 66.667 0.00 0.00 0.00 3.18
154 155 4.740822 ATGCGGGGCTGGTTGACC 62.741 66.667 0.00 0.00 45.48 4.02
160 161 1.293179 GGGCTGGTTGACCAAATGC 59.707 57.895 4.18 4.49 46.97 3.56
161 162 1.080569 GGCTGGTTGACCAAATGCG 60.081 57.895 4.18 0.00 46.97 4.73
162 163 1.523154 GGCTGGTTGACCAAATGCGA 61.523 55.000 4.18 0.00 46.97 5.10
163 164 0.387239 GCTGGTTGACCAAATGCGAC 60.387 55.000 4.18 0.00 46.97 5.19
164 165 0.240945 CTGGTTGACCAAATGCGACC 59.759 55.000 4.18 0.00 46.97 4.79
165 166 0.466372 TGGTTGACCAAATGCGACCA 60.466 50.000 0.00 0.00 44.35 4.02
166 167 0.671251 GGTTGACCAAATGCGACCAA 59.329 50.000 0.00 0.00 38.26 3.67
167 168 1.601914 GGTTGACCAAATGCGACCAAC 60.602 52.381 0.00 0.00 38.26 3.77
168 169 0.671251 TTGACCAAATGCGACCAACC 59.329 50.000 0.00 0.00 0.00 3.77
169 170 0.466372 TGACCAAATGCGACCAACCA 60.466 50.000 0.00 0.00 0.00 3.67
170 171 0.671251 GACCAAATGCGACCAACCAA 59.329 50.000 0.00 0.00 0.00 3.67
171 172 1.067821 GACCAAATGCGACCAACCAAA 59.932 47.619 0.00 0.00 0.00 3.28
172 173 1.202475 ACCAAATGCGACCAACCAAAC 60.202 47.619 0.00 0.00 0.00 2.93
173 174 1.127701 CAAATGCGACCAACCAAACG 58.872 50.000 0.00 0.00 0.00 3.60
176 177 3.944233 GCGACCAACCAAACGCGT 61.944 61.111 5.58 5.58 41.49 6.01
177 178 2.710698 CGACCAACCAAACGCGTT 59.289 55.556 20.79 20.79 0.00 4.84
178 179 1.368374 CGACCAACCAAACGCGTTC 60.368 57.895 26.77 9.20 0.00 3.95
179 180 1.009335 GACCAACCAAACGCGTTCC 60.009 57.895 26.77 3.67 0.00 3.62
180 181 1.716826 GACCAACCAAACGCGTTCCA 61.717 55.000 26.77 0.00 0.00 3.53
181 182 1.313812 ACCAACCAAACGCGTTCCAA 61.314 50.000 26.77 0.00 0.00 3.53
182 183 0.593773 CCAACCAAACGCGTTCCAAG 60.594 55.000 26.77 15.95 0.00 3.61
183 184 0.593773 CAACCAAACGCGTTCCAAGG 60.594 55.000 26.77 24.29 0.00 3.61
184 185 1.730451 AACCAAACGCGTTCCAAGGG 61.730 55.000 26.77 21.70 0.00 3.95
185 186 1.894756 CCAAACGCGTTCCAAGGGA 60.895 57.895 26.77 0.00 0.00 4.20
186 187 1.574428 CAAACGCGTTCCAAGGGAG 59.426 57.895 26.77 4.29 31.21 4.30
187 188 0.882927 CAAACGCGTTCCAAGGGAGA 60.883 55.000 26.77 0.00 31.21 3.71
188 189 0.602905 AAACGCGTTCCAAGGGAGAG 60.603 55.000 26.77 0.00 31.21 3.20
189 190 2.125512 CGCGTTCCAAGGGAGAGG 60.126 66.667 0.00 0.00 31.21 3.69
190 191 2.436824 GCGTTCCAAGGGAGAGGC 60.437 66.667 0.00 0.00 31.21 4.70
191 192 2.269241 CGTTCCAAGGGAGAGGCC 59.731 66.667 0.00 0.00 31.21 5.19
192 193 2.269241 GTTCCAAGGGAGAGGCCG 59.731 66.667 0.00 0.00 37.63 6.13
193 194 3.717294 TTCCAAGGGAGAGGCCGC 61.717 66.667 0.00 0.00 37.63 6.53
195 196 4.785453 CCAAGGGAGAGGCCGCAC 62.785 72.222 9.88 1.27 37.63 5.34
196 197 4.020617 CAAGGGAGAGGCCGCACA 62.021 66.667 9.88 0.00 37.63 4.57
197 198 3.011517 AAGGGAGAGGCCGCACAT 61.012 61.111 9.88 0.00 37.63 3.21
198 199 3.036429 AAGGGAGAGGCCGCACATC 62.036 63.158 9.88 0.00 37.63 3.06
199 200 4.899239 GGGAGAGGCCGCACATCG 62.899 72.222 9.88 0.00 37.63 3.84
201 202 4.819761 GAGAGGCCGCACATCGCA 62.820 66.667 9.88 0.00 42.60 5.10
202 203 4.827087 AGAGGCCGCACATCGCAG 62.827 66.667 9.88 0.00 42.60 5.18
206 207 4.824166 GCCGCACATCGCAGCAAG 62.824 66.667 0.00 0.00 43.93 4.01
207 208 3.425713 CCGCACATCGCAGCAAGT 61.426 61.111 0.00 0.00 42.60 3.16
208 209 2.557805 CGCACATCGCAGCAAGTT 59.442 55.556 0.00 0.00 42.60 2.66
209 210 1.510623 CGCACATCGCAGCAAGTTC 60.511 57.895 0.00 0.00 42.60 3.01
210 211 1.575922 GCACATCGCAGCAAGTTCA 59.424 52.632 0.00 0.00 41.79 3.18
211 212 0.040157 GCACATCGCAGCAAGTTCAA 60.040 50.000 0.00 0.00 41.79 2.69
212 213 1.401931 GCACATCGCAGCAAGTTCAAT 60.402 47.619 0.00 0.00 41.79 2.57
213 214 2.512885 CACATCGCAGCAAGTTCAATC 58.487 47.619 0.00 0.00 0.00 2.67
214 215 1.470098 ACATCGCAGCAAGTTCAATCC 59.530 47.619 0.00 0.00 0.00 3.01
215 216 1.098050 ATCGCAGCAAGTTCAATCCC 58.902 50.000 0.00 0.00 0.00 3.85
216 217 0.250684 TCGCAGCAAGTTCAATCCCA 60.251 50.000 0.00 0.00 0.00 4.37
217 218 0.813184 CGCAGCAAGTTCAATCCCAT 59.187 50.000 0.00 0.00 0.00 4.00
218 219 1.202222 CGCAGCAAGTTCAATCCCATC 60.202 52.381 0.00 0.00 0.00 3.51
219 220 1.135721 GCAGCAAGTTCAATCCCATCC 59.864 52.381 0.00 0.00 0.00 3.51
220 221 1.753073 CAGCAAGTTCAATCCCATCCC 59.247 52.381 0.00 0.00 0.00 3.85
221 222 1.642762 AGCAAGTTCAATCCCATCCCT 59.357 47.619 0.00 0.00 0.00 4.20
222 223 2.043526 AGCAAGTTCAATCCCATCCCTT 59.956 45.455 0.00 0.00 0.00 3.95
223 224 2.167075 GCAAGTTCAATCCCATCCCTTG 59.833 50.000 0.00 0.00 0.00 3.61
224 225 3.434309 CAAGTTCAATCCCATCCCTTGT 58.566 45.455 0.00 0.00 0.00 3.16
225 226 3.372440 AGTTCAATCCCATCCCTTGTC 57.628 47.619 0.00 0.00 0.00 3.18
226 227 2.024941 AGTTCAATCCCATCCCTTGTCC 60.025 50.000 0.00 0.00 0.00 4.02
227 228 1.679981 TCAATCCCATCCCTTGTCCA 58.320 50.000 0.00 0.00 0.00 4.02
228 229 1.284785 TCAATCCCATCCCTTGTCCAC 59.715 52.381 0.00 0.00 0.00 4.02
229 230 1.005805 CAATCCCATCCCTTGTCCACA 59.994 52.381 0.00 0.00 0.00 4.17
230 231 0.625849 ATCCCATCCCTTGTCCACAC 59.374 55.000 0.00 0.00 0.00 3.82
231 232 0.770166 TCCCATCCCTTGTCCACACA 60.770 55.000 0.00 0.00 0.00 3.72
232 233 0.332632 CCCATCCCTTGTCCACACAT 59.667 55.000 0.00 0.00 30.55 3.21
233 234 1.683011 CCCATCCCTTGTCCACACATC 60.683 57.143 0.00 0.00 30.55 3.06
234 235 1.004628 CCATCCCTTGTCCACACATCA 59.995 52.381 0.00 0.00 30.55 3.07
235 236 2.357465 CCATCCCTTGTCCACACATCAT 60.357 50.000 0.00 0.00 30.55 2.45
236 237 2.787473 TCCCTTGTCCACACATCATC 57.213 50.000 0.00 0.00 30.55 2.92
237 238 1.281867 TCCCTTGTCCACACATCATCC 59.718 52.381 0.00 0.00 30.55 3.51
238 239 1.683011 CCCTTGTCCACACATCATCCC 60.683 57.143 0.00 0.00 30.55 3.85
239 240 1.004628 CCTTGTCCACACATCATCCCA 59.995 52.381 0.00 0.00 30.55 4.37
240 241 2.357465 CCTTGTCCACACATCATCCCAT 60.357 50.000 0.00 0.00 30.55 4.00
241 242 2.423446 TGTCCACACATCATCCCATG 57.577 50.000 0.00 0.00 0.00 3.66
242 243 1.064537 TGTCCACACATCATCCCATGG 60.065 52.381 4.14 4.14 0.00 3.66
243 244 0.106569 TCCACACATCATCCCATGGC 60.107 55.000 6.09 0.00 0.00 4.40
244 245 1.111116 CCACACATCATCCCATGGCC 61.111 60.000 6.09 0.00 0.00 5.36
245 246 1.152902 ACACATCATCCCATGGCCG 60.153 57.895 6.09 0.00 0.00 6.13
246 247 2.203394 ACATCATCCCATGGCCGC 60.203 61.111 6.09 0.00 0.00 6.53
247 248 3.359523 CATCATCCCATGGCCGCG 61.360 66.667 6.09 0.00 0.00 6.46
263 264 4.810730 CGCAGCAGGAAGAGAGAG 57.189 61.111 0.00 0.00 0.00 3.20
264 265 2.187992 CGCAGCAGGAAGAGAGAGA 58.812 57.895 0.00 0.00 0.00 3.10
265 266 0.101040 CGCAGCAGGAAGAGAGAGAG 59.899 60.000 0.00 0.00 0.00 3.20
266 267 1.473258 GCAGCAGGAAGAGAGAGAGA 58.527 55.000 0.00 0.00 0.00 3.10
267 268 1.406539 GCAGCAGGAAGAGAGAGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
268 269 2.945440 GCAGCAGGAAGAGAGAGAGAGA 60.945 54.545 0.00 0.00 0.00 3.10
269 270 2.947652 CAGCAGGAAGAGAGAGAGAGAG 59.052 54.545 0.00 0.00 0.00 3.20
270 271 1.678101 GCAGGAAGAGAGAGAGAGAGC 59.322 57.143 0.00 0.00 0.00 4.09
271 272 2.945440 GCAGGAAGAGAGAGAGAGAGCA 60.945 54.545 0.00 0.00 0.00 4.26
272 273 2.947652 CAGGAAGAGAGAGAGAGAGCAG 59.052 54.545 0.00 0.00 0.00 4.24
273 274 2.578021 AGGAAGAGAGAGAGAGAGCAGT 59.422 50.000 0.00 0.00 0.00 4.40
274 275 2.945668 GGAAGAGAGAGAGAGAGCAGTC 59.054 54.545 0.00 0.00 0.00 3.51
275 276 2.717639 AGAGAGAGAGAGAGCAGTCC 57.282 55.000 0.00 0.00 0.00 3.85
276 277 1.915489 AGAGAGAGAGAGAGCAGTCCA 59.085 52.381 0.00 0.00 0.00 4.02
277 278 2.308570 AGAGAGAGAGAGAGCAGTCCAA 59.691 50.000 0.00 0.00 0.00 3.53
278 279 3.088532 GAGAGAGAGAGAGCAGTCCAAA 58.911 50.000 0.00 0.00 0.00 3.28
279 280 3.091545 AGAGAGAGAGAGCAGTCCAAAG 58.908 50.000 0.00 0.00 0.00 2.77
280 281 1.550072 AGAGAGAGAGCAGTCCAAAGC 59.450 52.381 0.00 0.00 0.00 3.51
281 282 1.274728 GAGAGAGAGCAGTCCAAAGCA 59.725 52.381 0.00 0.00 0.00 3.91
282 283 1.275856 AGAGAGAGCAGTCCAAAGCAG 59.724 52.381 0.00 0.00 0.00 4.24
283 284 1.274728 GAGAGAGCAGTCCAAAGCAGA 59.725 52.381 0.00 0.00 0.00 4.26
284 285 1.696336 AGAGAGCAGTCCAAAGCAGAA 59.304 47.619 0.00 0.00 0.00 3.02
285 286 2.105477 AGAGAGCAGTCCAAAGCAGAAA 59.895 45.455 0.00 0.00 0.00 2.52
286 287 2.225255 GAGAGCAGTCCAAAGCAGAAAC 59.775 50.000 0.00 0.00 0.00 2.78
287 288 0.947244 AGCAGTCCAAAGCAGAAACG 59.053 50.000 0.00 0.00 0.00 3.60
288 289 0.040067 GCAGTCCAAAGCAGAAACGG 60.040 55.000 0.00 0.00 0.00 4.44
289 290 1.593196 CAGTCCAAAGCAGAAACGGA 58.407 50.000 0.00 0.00 0.00 4.69
290 291 1.264288 CAGTCCAAAGCAGAAACGGAC 59.736 52.381 0.00 0.00 45.34 4.79
291 292 0.234884 GTCCAAAGCAGAAACGGACG 59.765 55.000 0.00 0.00 37.04 4.79
292 293 1.082104 CCAAAGCAGAAACGGACGC 60.082 57.895 0.00 0.00 0.00 5.19
293 294 1.646540 CAAAGCAGAAACGGACGCA 59.353 52.632 0.00 0.00 0.00 5.24
294 295 0.657368 CAAAGCAGAAACGGACGCAC 60.657 55.000 0.00 0.00 0.00 5.34
295 296 2.101209 AAAGCAGAAACGGACGCACG 62.101 55.000 0.00 0.00 40.31 5.34
296 297 4.719616 GCAGAAACGGACGCACGC 62.720 66.667 0.00 0.00 37.37 5.34
297 298 4.409588 CAGAAACGGACGCACGCG 62.410 66.667 10.36 10.36 46.03 6.01
319 320 1.958715 CACGGGCACGATGTTCACA 60.959 57.895 19.19 0.00 44.60 3.58
441 454 2.484203 CGGTCTCTTCCGGTCGTC 59.516 66.667 0.00 0.00 45.88 4.20
442 455 2.484203 GGTCTCTTCCGGTCGTCG 59.516 66.667 0.00 0.00 38.88 5.12
628 657 1.803922 CGAGATACGCACGCACCAA 60.804 57.895 0.00 0.00 34.51 3.67
706 1248 2.177531 CGTGGGTACGTGACTCGG 59.822 66.667 0.00 0.00 44.99 4.63
712 1254 1.505353 GTACGTGACTCGGAGTGGG 59.495 63.158 16.72 6.75 44.69 4.61
719 1261 4.154347 CTCGGAGTGGGCTGGCTC 62.154 72.222 0.00 0.00 0.00 4.70
722 1264 4.459089 GGAGTGGGCTGGCTCGTC 62.459 72.222 0.00 0.00 32.83 4.20
723 1265 3.386237 GAGTGGGCTGGCTCGTCT 61.386 66.667 0.00 0.00 0.00 4.18
724 1266 2.037367 AGTGGGCTGGCTCGTCTA 59.963 61.111 0.00 0.00 0.00 2.59
781 1331 3.057586 CCCTCTTCTCCTACTCCTCCTA 58.942 54.545 0.00 0.00 0.00 2.94
782 1332 3.181437 CCCTCTTCTCCTACTCCTCCTAC 60.181 56.522 0.00 0.00 0.00 3.18
783 1333 3.720002 CCTCTTCTCCTACTCCTCCTACT 59.280 52.174 0.00 0.00 0.00 2.57
847 1401 2.253403 CTGGAAGGAAGGTACGCCCC 62.253 65.000 0.00 0.00 34.57 5.80
848 1402 2.186125 GAAGGAAGGTACGCCCCG 59.814 66.667 0.00 0.00 34.57 5.73
936 1503 2.522193 GCCGAGTAGGGAGAGGGG 60.522 72.222 0.00 0.00 41.48 4.79
1176 1748 2.408050 CACAAGTACAGGTCAGTCAGC 58.592 52.381 0.00 0.00 0.00 4.26
1177 1749 1.344763 ACAAGTACAGGTCAGTCAGCC 59.655 52.381 0.00 0.00 0.00 4.85
1178 1750 0.603569 AAGTACAGGTCAGTCAGCCG 59.396 55.000 0.00 0.00 0.00 5.52
1179 1751 1.446272 GTACAGGTCAGTCAGCCGC 60.446 63.158 0.00 0.00 0.00 6.53
1180 1752 2.646175 TACAGGTCAGTCAGCCGCC 61.646 63.158 0.00 0.00 0.00 6.13
1183 1755 4.148825 GGTCAGTCAGCCGCCGAT 62.149 66.667 0.00 0.00 0.00 4.18
1192 1764 4.610714 GCCGCCGATTCCCTCCTC 62.611 72.222 0.00 0.00 0.00 3.71
1193 1765 2.840102 CCGCCGATTCCCTCCTCT 60.840 66.667 0.00 0.00 0.00 3.69
1194 1766 1.530891 CCGCCGATTCCCTCCTCTA 60.531 63.158 0.00 0.00 0.00 2.43
1195 1767 0.900647 CCGCCGATTCCCTCCTCTAT 60.901 60.000 0.00 0.00 0.00 1.98
1207 1779 2.069775 CTCCTCTATCTCTCTCCCCCA 58.930 57.143 0.00 0.00 0.00 4.96
1208 1780 1.783979 TCCTCTATCTCTCTCCCCCAC 59.216 57.143 0.00 0.00 0.00 4.61
1210 1782 2.178984 CCTCTATCTCTCTCCCCCACTT 59.821 54.545 0.00 0.00 0.00 3.16
1212 1784 2.158593 TCTATCTCTCTCCCCCACTTCG 60.159 54.545 0.00 0.00 0.00 3.79
1237 1813 1.305046 TCCCCTCCTTGACTCCGTC 60.305 63.158 0.00 0.00 0.00 4.79
1251 1827 4.406173 CGTCGCGGTCTGCTGTCT 62.406 66.667 6.13 0.00 43.27 3.41
1257 1833 1.735920 CGGTCTGCTGTCTGTCTGC 60.736 63.158 0.00 0.00 40.62 4.26
1278 1864 1.913778 TATAAGGTGATCGCCGGCTA 58.086 50.000 26.68 15.56 0.00 3.93
1283 1869 2.912542 TGATCGCCGGCTAGAGGG 60.913 66.667 26.68 7.77 0.00 4.30
1310 1896 1.639722 TTGGGTCCTCGATTGAGTGA 58.360 50.000 9.19 3.48 40.85 3.41
1336 1922 1.226311 GGATCTGGGGGACTGGATTT 58.774 55.000 0.00 0.00 0.00 2.17
1337 1923 1.570979 GGATCTGGGGGACTGGATTTT 59.429 52.381 0.00 0.00 0.00 1.82
1338 1924 2.659428 GATCTGGGGGACTGGATTTTG 58.341 52.381 0.00 0.00 0.00 2.44
1339 1925 0.039618 TCTGGGGGACTGGATTTTGC 59.960 55.000 0.00 0.00 0.00 3.68
1340 1926 0.040204 CTGGGGGACTGGATTTTGCT 59.960 55.000 0.00 0.00 0.00 3.91
1341 1927 0.486879 TGGGGGACTGGATTTTGCTT 59.513 50.000 0.00 0.00 0.00 3.91
1349 1935 2.036346 ACTGGATTTTGCTTTGCAGACC 59.964 45.455 0.00 0.00 40.61 3.85
1425 2018 2.081462 GACGGGTTGGTTTCCACATAG 58.919 52.381 0.00 0.00 30.78 2.23
1499 2092 2.092103 TGGTGAAGGGCAAACAGTTACT 60.092 45.455 0.00 0.00 0.00 2.24
1546 2139 6.775708 TGCTAGGACTGTAGTTTTGGTAATT 58.224 36.000 0.00 0.00 0.00 1.40
1570 2163 8.966069 TTACCACATTAATGGATCGTTAATCA 57.034 30.769 19.37 0.00 43.02 2.57
1712 2305 6.410540 AGGTTGATTTCTTACAAGCTCTAGG 58.589 40.000 0.00 0.00 46.89 3.02
1718 2311 7.928706 TGATTTCTTACAAGCTCTAGGAATAGC 59.071 37.037 0.00 0.00 39.08 2.97
1766 2359 6.826741 TGTAAAGCTGTCAAGGAAAGTAGTTT 59.173 34.615 0.00 0.00 0.00 2.66
1767 2360 7.988599 TGTAAAGCTGTCAAGGAAAGTAGTTTA 59.011 33.333 0.00 0.00 0.00 2.01
1800 2393 0.831307 AGGATCTTACCCGTGAAGGC 59.169 55.000 0.00 0.00 39.21 4.35
1849 2445 8.713271 CCTAGTAACTGAAAAGTGAAGACATTC 58.287 37.037 0.00 0.00 35.87 2.67
1851 2447 8.147642 AGTAACTGAAAAGTGAAGACATTCAG 57.852 34.615 11.17 11.17 45.96 3.02
1853 2449 4.024556 ACTGAAAAGTGAAGACATTCAGCG 60.025 41.667 12.34 0.00 45.96 5.18
1854 2450 3.876914 TGAAAAGTGAAGACATTCAGCGT 59.123 39.130 0.00 0.00 45.96 5.07
1855 2451 5.053811 TGAAAAGTGAAGACATTCAGCGTA 58.946 37.500 0.00 0.00 45.96 4.42
1856 2452 5.525745 TGAAAAGTGAAGACATTCAGCGTAA 59.474 36.000 0.00 0.00 45.96 3.18
1857 2453 5.597813 AAAGTGAAGACATTCAGCGTAAG 57.402 39.130 0.00 0.00 45.96 2.34
1858 2454 3.589988 AGTGAAGACATTCAGCGTAAGG 58.410 45.455 0.00 0.00 45.96 2.69
1943 2540 1.469703 TGAGATGTTTGATTGGCTGCG 59.530 47.619 0.00 0.00 0.00 5.18
1961 2558 4.290155 CTGCGTTTGTGTGCTCTAAAAAT 58.710 39.130 0.00 0.00 0.00 1.82
2135 2732 5.188948 ACTCCATTGTACATACTAACTGGCA 59.811 40.000 0.00 0.00 0.00 4.92
2249 2846 1.872388 TCCAGTCGTTCATTTCGCAA 58.128 45.000 0.00 0.00 0.00 4.85
2264 2861 8.206516 TCATTTCGCAATTCGTTTACTTTTAC 57.793 30.769 0.00 0.00 39.67 2.01
2309 2906 0.907230 ACCTGGAGAAGAGTGGAGCC 60.907 60.000 0.00 0.00 0.00 4.70
2348 2945 1.269936 GCCAACTTGTTGATTGCAGCT 60.270 47.619 14.30 0.00 0.00 4.24
2560 3157 0.749454 GGCTTGAGGCATTCGATGGT 60.749 55.000 0.00 0.00 44.01 3.55
2897 3495 6.597562 TGTAAATTAAATGGGGCTCTCGTAT 58.402 36.000 0.00 0.00 0.00 3.06
2946 3544 9.177608 CTTGGGATAATATCTTGAACAAACTGA 57.822 33.333 0.00 0.00 0.00 3.41
2955 3553 5.605534 TCTTGAACAAACTGAGAGGAAGAG 58.394 41.667 0.00 0.00 0.00 2.85
2963 3561 3.430453 ACTGAGAGGAAGAGGTTCAGAG 58.570 50.000 6.79 0.00 38.81 3.35
3003 3601 3.961480 TGTTGTCCATGTCTCCTACTG 57.039 47.619 0.00 0.00 0.00 2.74
3090 3981 7.587037 TTTTCACCTTCTTGATTCAGTCAAT 57.413 32.000 0.00 0.00 45.36 2.57
3091 3982 8.690203 TTTTCACCTTCTTGATTCAGTCAATA 57.310 30.769 0.00 0.00 45.36 1.90
3208 4325 5.640189 AAGTAGCAGTGTATTCGTACTGT 57.360 39.130 0.00 0.00 44.66 3.55
3212 4329 4.734917 AGCAGTGTATTCGTACTGTTCTC 58.265 43.478 0.00 0.00 44.66 2.87
3225 4342 1.798813 CTGTTCTCGGGTGTAACTTGC 59.201 52.381 0.00 0.00 36.74 4.01
3237 4354 5.179929 GGGTGTAACTTGCAACGTTATAAGT 59.820 40.000 18.34 18.34 36.74 2.24
3239 4356 6.793680 GGTGTAACTTGCAACGTTATAAGTTC 59.206 38.462 29.69 23.54 41.11 3.01
3286 4403 6.736853 GCACGAGATAACAACTGTTTTATGTC 59.263 38.462 0.00 14.93 39.31 3.06
3292 4409 9.520515 AGATAACAACTGTTTTATGTCCAATCT 57.479 29.630 0.00 0.00 39.31 2.40
3371 4488 1.749634 AGAAATGCAGAATCAGCAGGC 59.250 47.619 6.47 0.00 46.36 4.85
3383 4500 2.272146 GCAGGCGATTCTTCCCCA 59.728 61.111 0.00 0.00 0.00 4.96
3553 4677 2.618709 GCTGCCTATAAATTCAACCGCT 59.381 45.455 0.00 0.00 0.00 5.52
3556 4680 4.131596 TGCCTATAAATTCAACCGCTACC 58.868 43.478 0.00 0.00 0.00 3.18
3766 4890 7.362574 GCTCAGATACTAAAGACAGTTCTGAGT 60.363 40.741 25.41 8.89 46.42 3.41
3935 5059 4.738740 GTCTAATCGTCCACTGGTATTTCG 59.261 45.833 0.00 0.00 0.00 3.46
3984 5108 1.220529 CAGAAGCAGAACAGCACGAA 58.779 50.000 0.00 0.00 36.85 3.85
3998 5122 1.596727 GCACGAATCATCTTGAGAGCC 59.403 52.381 0.00 0.00 0.00 4.70
4008 5132 1.925255 TCTTGAGAGCCCCATGGAATT 59.075 47.619 15.22 0.00 0.00 2.17
4057 5183 6.441088 TCCTGTAGCTCTGAGTATCTGATA 57.559 41.667 6.53 0.00 42.34 2.15
4061 5187 7.230510 CCTGTAGCTCTGAGTATCTGATACTTT 59.769 40.741 26.33 9.98 45.64 2.66
4069 5209 8.981659 TCTGAGTATCTGATACTTTGAATGGAA 58.018 33.333 26.33 7.41 45.64 3.53
4085 5225 6.726379 TGAATGGAATGGAATAGGTGTTGTA 58.274 36.000 0.00 0.00 0.00 2.41
4137 5288 2.803956 TGTGGTCTGGTAGACTGGTAG 58.196 52.381 8.68 0.00 44.46 3.18
4138 5289 2.109480 TGTGGTCTGGTAGACTGGTAGT 59.891 50.000 8.68 0.00 44.46 2.73
4140 5291 3.693578 GTGGTCTGGTAGACTGGTAGTAC 59.306 52.174 8.68 0.00 44.46 2.73
4141 5292 3.590630 TGGTCTGGTAGACTGGTAGTACT 59.409 47.826 0.00 0.00 44.46 2.73
4142 5293 4.784838 TGGTCTGGTAGACTGGTAGTACTA 59.215 45.833 0.00 0.00 44.46 1.82
4143 5294 5.431073 TGGTCTGGTAGACTGGTAGTACTAT 59.569 44.000 5.75 0.00 44.46 2.12
4144 5295 6.616959 TGGTCTGGTAGACTGGTAGTACTATA 59.383 42.308 5.75 0.00 44.46 1.31
4145 5296 6.934083 GGTCTGGTAGACTGGTAGTACTATAC 59.066 46.154 5.75 3.45 44.46 1.47
4146 5297 6.644592 GTCTGGTAGACTGGTAGTACTATACG 59.355 46.154 5.75 0.23 41.88 3.06
4147 5298 6.325028 TCTGGTAGACTGGTAGTACTATACGT 59.675 42.308 5.75 3.47 0.00 3.57
4148 5299 6.283694 TGGTAGACTGGTAGTACTATACGTG 58.716 44.000 5.75 3.11 0.00 4.49
4149 5300 6.127054 TGGTAGACTGGTAGTACTATACGTGT 60.127 42.308 5.75 4.89 0.00 4.49
4150 5301 7.069455 TGGTAGACTGGTAGTACTATACGTGTA 59.931 40.741 5.75 0.00 0.00 2.90
4191 5343 7.678947 TCTATTCTTTCTTTCTTTGCTGGAG 57.321 36.000 0.00 0.00 0.00 3.86
4192 5344 7.453393 TCTATTCTTTCTTTCTTTGCTGGAGA 58.547 34.615 0.00 0.00 0.00 3.71
4214 5366 8.574737 GGAGATGAAGCAATAGCAATAAATCTT 58.425 33.333 0.00 0.00 45.49 2.40
4215 5367 9.962783 GAGATGAAGCAATAGCAATAAATCTTT 57.037 29.630 0.00 0.00 45.49 2.52
4538 5694 2.342279 CCCTTGAAGTCGACGCCA 59.658 61.111 10.46 9.32 0.00 5.69
4573 5732 3.132139 CGGCGAGAACTCCTCCGA 61.132 66.667 18.43 0.00 41.60 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.750341 TTCGTTGCACTCCTCGGGAA 61.750 55.000 0.00 0.00 0.00 3.97
1 2 2.154798 CTTCGTTGCACTCCTCGGGA 62.155 60.000 0.00 0.00 0.00 5.14
2 3 1.738099 CTTCGTTGCACTCCTCGGG 60.738 63.158 0.00 0.00 0.00 5.14
3 4 0.734253 CTCTTCGTTGCACTCCTCGG 60.734 60.000 0.00 0.00 0.00 4.63
4 5 1.347817 GCTCTTCGTTGCACTCCTCG 61.348 60.000 0.00 0.00 0.00 4.63
5 6 1.016653 GGCTCTTCGTTGCACTCCTC 61.017 60.000 0.00 0.00 0.00 3.71
6 7 1.004440 GGCTCTTCGTTGCACTCCT 60.004 57.895 0.00 0.00 0.00 3.69
7 8 1.301716 TGGCTCTTCGTTGCACTCC 60.302 57.895 0.00 0.00 0.00 3.85
8 9 0.880278 TGTGGCTCTTCGTTGCACTC 60.880 55.000 0.00 0.00 0.00 3.51
9 10 1.146041 TGTGGCTCTTCGTTGCACT 59.854 52.632 0.00 0.00 0.00 4.40
10 11 1.279840 GTGTGGCTCTTCGTTGCAC 59.720 57.895 0.00 0.00 0.00 4.57
11 12 2.243957 CGTGTGGCTCTTCGTTGCA 61.244 57.895 0.00 0.00 0.00 4.08
12 13 2.244651 ACGTGTGGCTCTTCGTTGC 61.245 57.895 0.00 0.00 32.62 4.17
13 14 1.564622 CACGTGTGGCTCTTCGTTG 59.435 57.895 7.58 2.41 34.30 4.10
14 15 1.594293 CCACGTGTGGCTCTTCGTT 60.594 57.895 15.65 0.00 44.73 3.85
15 16 2.029073 CCACGTGTGGCTCTTCGT 59.971 61.111 15.65 5.05 44.73 3.85
29 30 4.814294 CAGGTAGGACGCGGCCAC 62.814 72.222 36.60 27.50 0.00 5.01
33 34 4.514577 CAGCCAGGTAGGACGCGG 62.515 72.222 12.47 0.00 41.22 6.46
35 36 4.082523 TGCAGCCAGGTAGGACGC 62.083 66.667 0.00 0.00 41.22 5.19
36 37 2.185350 CTGCAGCCAGGTAGGACG 59.815 66.667 0.00 0.00 41.22 4.79
37 38 0.972983 TCTCTGCAGCCAGGTAGGAC 60.973 60.000 9.47 0.00 41.22 3.85
38 39 0.252239 TTCTCTGCAGCCAGGTAGGA 60.252 55.000 9.47 0.00 41.22 2.94
39 40 0.615331 TTTCTCTGCAGCCAGGTAGG 59.385 55.000 9.47 0.00 39.61 3.18
40 41 1.277557 AGTTTCTCTGCAGCCAGGTAG 59.722 52.381 9.47 0.00 39.61 3.18
41 42 1.352083 AGTTTCTCTGCAGCCAGGTA 58.648 50.000 9.47 0.00 39.61 3.08
42 43 1.002544 GTAGTTTCTCTGCAGCCAGGT 59.997 52.381 9.47 0.00 39.61 4.00
43 44 1.677217 GGTAGTTTCTCTGCAGCCAGG 60.677 57.143 9.47 0.00 39.61 4.45
44 45 1.731720 GGTAGTTTCTCTGCAGCCAG 58.268 55.000 9.47 1.86 40.54 4.85
45 46 0.037326 CGGTAGTTTCTCTGCAGCCA 60.037 55.000 9.47 0.00 0.00 4.75
46 47 0.246635 TCGGTAGTTTCTCTGCAGCC 59.753 55.000 9.47 0.22 0.00 4.85
47 48 1.929836 CATCGGTAGTTTCTCTGCAGC 59.070 52.381 9.47 0.00 0.00 5.25
48 49 3.182967 GTCATCGGTAGTTTCTCTGCAG 58.817 50.000 7.63 7.63 0.00 4.41
49 50 2.560981 TGTCATCGGTAGTTTCTCTGCA 59.439 45.455 0.00 0.00 0.00 4.41
50 51 3.182967 CTGTCATCGGTAGTTTCTCTGC 58.817 50.000 0.00 0.00 0.00 4.26
51 52 4.442375 ACTGTCATCGGTAGTTTCTCTG 57.558 45.455 0.00 0.00 0.00 3.35
52 53 5.821516 CTACTGTCATCGGTAGTTTCTCT 57.178 43.478 6.18 0.00 44.24 3.10
60 61 2.210961 CGAGAGCTACTGTCATCGGTA 58.789 52.381 0.00 0.00 34.68 4.02
61 62 1.018148 CGAGAGCTACTGTCATCGGT 58.982 55.000 0.00 0.00 37.00 4.69
62 63 0.309302 CCGAGAGCTACTGTCATCGG 59.691 60.000 0.00 0.00 43.09 4.18
63 64 0.309302 CCCGAGAGCTACTGTCATCG 59.691 60.000 0.00 0.00 0.00 3.84
64 65 0.031449 GCCCGAGAGCTACTGTCATC 59.969 60.000 0.00 0.00 0.00 2.92
65 66 1.395826 GGCCCGAGAGCTACTGTCAT 61.396 60.000 0.00 0.00 0.00 3.06
66 67 2.052690 GGCCCGAGAGCTACTGTCA 61.053 63.158 0.00 0.00 0.00 3.58
67 68 1.755008 AGGCCCGAGAGCTACTGTC 60.755 63.158 0.00 0.00 0.00 3.51
68 69 2.055042 CAGGCCCGAGAGCTACTGT 61.055 63.158 0.00 0.00 0.00 3.55
69 70 2.790791 CCAGGCCCGAGAGCTACTG 61.791 68.421 0.00 0.00 0.00 2.74
70 71 2.443016 CCAGGCCCGAGAGCTACT 60.443 66.667 0.00 0.00 0.00 2.57
71 72 4.228567 GCCAGGCCCGAGAGCTAC 62.229 72.222 0.00 0.00 0.00 3.58
84 85 2.478335 TTAAAGCAGTCCCGGGCCAG 62.478 60.000 18.49 1.04 0.00 4.85
85 86 2.478335 CTTAAAGCAGTCCCGGGCCA 62.478 60.000 18.49 0.00 0.00 5.36
86 87 1.749258 CTTAAAGCAGTCCCGGGCC 60.749 63.158 18.49 3.47 0.00 5.80
87 88 0.608308 AACTTAAAGCAGTCCCGGGC 60.608 55.000 18.49 11.70 0.00 6.13
88 89 1.905637 AAACTTAAAGCAGTCCCGGG 58.094 50.000 16.85 16.85 0.00 5.73
89 90 4.674362 GCATAAAACTTAAAGCAGTCCCGG 60.674 45.833 0.00 0.00 0.00 5.73
90 91 4.412207 GCATAAAACTTAAAGCAGTCCCG 58.588 43.478 0.00 0.00 0.00 5.14
91 92 4.412207 CGCATAAAACTTAAAGCAGTCCC 58.588 43.478 0.00 0.00 0.00 4.46
92 93 4.412207 CCGCATAAAACTTAAAGCAGTCC 58.588 43.478 0.00 0.00 0.00 3.85
93 94 4.412207 CCCGCATAAAACTTAAAGCAGTC 58.588 43.478 0.00 0.00 0.00 3.51
94 95 3.366985 GCCCGCATAAAACTTAAAGCAGT 60.367 43.478 0.00 0.00 0.00 4.40
95 96 3.179048 GCCCGCATAAAACTTAAAGCAG 58.821 45.455 0.00 0.00 0.00 4.24
96 97 2.094442 GGCCCGCATAAAACTTAAAGCA 60.094 45.455 0.00 0.00 0.00 3.91
97 98 2.094442 TGGCCCGCATAAAACTTAAAGC 60.094 45.455 0.00 0.00 0.00 3.51
98 99 3.859411 TGGCCCGCATAAAACTTAAAG 57.141 42.857 0.00 0.00 0.00 1.85
99 100 3.827302 TCTTGGCCCGCATAAAACTTAAA 59.173 39.130 0.00 0.00 0.00 1.52
100 101 3.191791 GTCTTGGCCCGCATAAAACTTAA 59.808 43.478 0.00 0.00 0.00 1.85
101 102 2.750712 GTCTTGGCCCGCATAAAACTTA 59.249 45.455 0.00 0.00 0.00 2.24
102 103 1.544246 GTCTTGGCCCGCATAAAACTT 59.456 47.619 0.00 0.00 0.00 2.66
103 104 1.173913 GTCTTGGCCCGCATAAAACT 58.826 50.000 0.00 0.00 0.00 2.66
104 105 0.179174 CGTCTTGGCCCGCATAAAAC 60.179 55.000 0.00 0.00 0.00 2.43
105 106 0.606944 ACGTCTTGGCCCGCATAAAA 60.607 50.000 0.00 0.00 0.00 1.52
106 107 1.003112 ACGTCTTGGCCCGCATAAA 60.003 52.632 0.00 0.00 0.00 1.40
107 108 1.743623 CACGTCTTGGCCCGCATAA 60.744 57.895 0.00 0.00 0.00 1.90
108 109 2.125310 CACGTCTTGGCCCGCATA 60.125 61.111 0.00 0.00 0.00 3.14
114 115 4.947147 TGCACCCACGTCTTGGCC 62.947 66.667 0.00 0.00 45.37 5.36
115 116 3.357079 CTGCACCCACGTCTTGGC 61.357 66.667 0.00 0.00 45.37 4.52
116 117 1.961277 GACTGCACCCACGTCTTGG 60.961 63.158 0.00 0.00 46.47 3.61
117 118 1.961277 GGACTGCACCCACGTCTTG 60.961 63.158 3.40 0.00 0.00 3.02
118 119 2.426023 GGACTGCACCCACGTCTT 59.574 61.111 3.40 0.00 0.00 3.01
135 136 4.738998 TCAACCAGCCCCGCATGG 62.739 66.667 0.00 0.00 42.60 3.66
136 137 3.443045 GTCAACCAGCCCCGCATG 61.443 66.667 0.00 0.00 0.00 4.06
137 138 4.740822 GGTCAACCAGCCCCGCAT 62.741 66.667 0.00 0.00 35.64 4.73
146 147 0.466372 TGGTCGCATTTGGTCAACCA 60.466 50.000 0.00 0.00 45.94 3.67
147 148 0.671251 TTGGTCGCATTTGGTCAACC 59.329 50.000 0.00 0.00 0.00 3.77
148 149 1.601914 GGTTGGTCGCATTTGGTCAAC 60.602 52.381 0.00 0.00 35.23 3.18
149 150 0.671251 GGTTGGTCGCATTTGGTCAA 59.329 50.000 0.00 0.00 0.00 3.18
150 151 0.466372 TGGTTGGTCGCATTTGGTCA 60.466 50.000 0.00 0.00 0.00 4.02
151 152 0.671251 TTGGTTGGTCGCATTTGGTC 59.329 50.000 0.00 0.00 0.00 4.02
152 153 1.115467 TTTGGTTGGTCGCATTTGGT 58.885 45.000 0.00 0.00 0.00 3.67
153 154 1.496934 GTTTGGTTGGTCGCATTTGG 58.503 50.000 0.00 0.00 0.00 3.28
154 155 1.127701 CGTTTGGTTGGTCGCATTTG 58.872 50.000 0.00 0.00 0.00 2.32
155 156 0.596341 GCGTTTGGTTGGTCGCATTT 60.596 50.000 0.00 0.00 46.40 2.32
156 157 1.007849 GCGTTTGGTTGGTCGCATT 60.008 52.632 0.00 0.00 46.40 3.56
157 158 2.642700 GCGTTTGGTTGGTCGCAT 59.357 55.556 0.00 0.00 46.40 4.73
159 160 3.457903 AACGCGTTTGGTTGGTCGC 62.458 57.895 20.79 0.00 44.23 5.19
160 161 1.368374 GAACGCGTTTGGTTGGTCG 60.368 57.895 27.32 0.00 0.00 4.79
161 162 1.009335 GGAACGCGTTTGGTTGGTC 60.009 57.895 27.32 10.49 0.00 4.02
162 163 1.313812 TTGGAACGCGTTTGGTTGGT 61.314 50.000 27.32 0.00 0.00 3.67
163 164 0.593773 CTTGGAACGCGTTTGGTTGG 60.594 55.000 27.32 10.61 0.00 3.77
164 165 0.593773 CCTTGGAACGCGTTTGGTTG 60.594 55.000 27.32 14.65 0.00 3.77
165 166 1.730451 CCCTTGGAACGCGTTTGGTT 61.730 55.000 27.32 2.07 0.00 3.67
166 167 2.190841 CCCTTGGAACGCGTTTGGT 61.191 57.895 27.32 2.55 0.00 3.67
167 168 1.852067 CTCCCTTGGAACGCGTTTGG 61.852 60.000 27.32 22.68 0.00 3.28
168 169 0.882927 TCTCCCTTGGAACGCGTTTG 60.883 55.000 27.32 15.67 0.00 2.93
169 170 0.602905 CTCTCCCTTGGAACGCGTTT 60.603 55.000 27.32 9.95 0.00 3.60
170 171 1.004918 CTCTCCCTTGGAACGCGTT 60.005 57.895 26.97 26.97 0.00 4.84
171 172 2.657237 CTCTCCCTTGGAACGCGT 59.343 61.111 5.58 5.58 0.00 6.01
172 173 2.125512 CCTCTCCCTTGGAACGCG 60.126 66.667 3.53 3.53 0.00 6.01
173 174 2.436824 GCCTCTCCCTTGGAACGC 60.437 66.667 0.00 0.00 0.00 4.84
174 175 2.269241 GGCCTCTCCCTTGGAACG 59.731 66.667 0.00 0.00 0.00 3.95
175 176 2.269241 CGGCCTCTCCCTTGGAAC 59.731 66.667 0.00 0.00 0.00 3.62
176 177 3.717294 GCGGCCTCTCCCTTGGAA 61.717 66.667 0.00 0.00 0.00 3.53
178 179 4.785453 GTGCGGCCTCTCCCTTGG 62.785 72.222 0.00 0.00 0.00 3.61
179 180 3.335356 ATGTGCGGCCTCTCCCTTG 62.335 63.158 0.00 0.00 0.00 3.61
180 181 3.011517 ATGTGCGGCCTCTCCCTT 61.012 61.111 0.00 0.00 0.00 3.95
181 182 3.474570 GATGTGCGGCCTCTCCCT 61.475 66.667 0.00 0.00 0.00 4.20
182 183 4.899239 CGATGTGCGGCCTCTCCC 62.899 72.222 0.00 0.00 36.03 4.30
192 193 0.040157 TTGAACTTGCTGCGATGTGC 60.040 50.000 0.00 0.00 46.70 4.57
193 194 2.512885 GATTGAACTTGCTGCGATGTG 58.487 47.619 0.00 0.00 0.00 3.21
194 195 1.470098 GGATTGAACTTGCTGCGATGT 59.530 47.619 0.00 0.00 0.00 3.06
195 196 1.202222 GGGATTGAACTTGCTGCGATG 60.202 52.381 0.00 0.00 0.00 3.84
196 197 1.098050 GGGATTGAACTTGCTGCGAT 58.902 50.000 0.00 0.00 0.00 4.58
197 198 0.250684 TGGGATTGAACTTGCTGCGA 60.251 50.000 0.00 0.00 0.00 5.10
198 199 0.813184 ATGGGATTGAACTTGCTGCG 59.187 50.000 0.00 0.00 0.00 5.18
199 200 1.135721 GGATGGGATTGAACTTGCTGC 59.864 52.381 0.00 0.00 0.00 5.25
200 201 1.753073 GGGATGGGATTGAACTTGCTG 59.247 52.381 0.00 0.00 0.00 4.41
201 202 1.642762 AGGGATGGGATTGAACTTGCT 59.357 47.619 0.00 0.00 0.00 3.91
202 203 2.149973 AGGGATGGGATTGAACTTGC 57.850 50.000 0.00 0.00 0.00 4.01
203 204 3.434309 ACAAGGGATGGGATTGAACTTG 58.566 45.455 0.00 0.00 39.60 3.16
204 205 3.564352 GGACAAGGGATGGGATTGAACTT 60.564 47.826 0.00 0.00 0.00 2.66
205 206 2.024941 GGACAAGGGATGGGATTGAACT 60.025 50.000 0.00 0.00 0.00 3.01
206 207 2.291540 TGGACAAGGGATGGGATTGAAC 60.292 50.000 0.00 0.00 0.00 3.18
207 208 1.999295 TGGACAAGGGATGGGATTGAA 59.001 47.619 0.00 0.00 0.00 2.69
208 209 1.284785 GTGGACAAGGGATGGGATTGA 59.715 52.381 0.00 0.00 0.00 2.57
209 210 1.005805 TGTGGACAAGGGATGGGATTG 59.994 52.381 0.00 0.00 0.00 2.67
210 211 1.005924 GTGTGGACAAGGGATGGGATT 59.994 52.381 0.00 0.00 0.00 3.01
211 212 0.625849 GTGTGGACAAGGGATGGGAT 59.374 55.000 0.00 0.00 0.00 3.85
212 213 0.770166 TGTGTGGACAAGGGATGGGA 60.770 55.000 0.00 0.00 0.00 4.37
213 214 0.332632 ATGTGTGGACAAGGGATGGG 59.667 55.000 0.00 0.00 35.11 4.00
214 215 1.004628 TGATGTGTGGACAAGGGATGG 59.995 52.381 0.00 0.00 35.11 3.51
215 216 2.495155 TGATGTGTGGACAAGGGATG 57.505 50.000 0.00 0.00 35.11 3.51
216 217 2.092212 GGATGATGTGTGGACAAGGGAT 60.092 50.000 0.00 0.00 35.11 3.85
217 218 1.281867 GGATGATGTGTGGACAAGGGA 59.718 52.381 0.00 0.00 35.11 4.20
218 219 1.683011 GGGATGATGTGTGGACAAGGG 60.683 57.143 0.00 0.00 35.11 3.95
219 220 1.004628 TGGGATGATGTGTGGACAAGG 59.995 52.381 0.00 0.00 35.11 3.61
220 221 2.495155 TGGGATGATGTGTGGACAAG 57.505 50.000 0.00 0.00 35.11 3.16
221 222 2.621147 CCATGGGATGATGTGTGGACAA 60.621 50.000 2.85 0.00 35.11 3.18
222 223 1.064537 CCATGGGATGATGTGTGGACA 60.065 52.381 2.85 0.00 36.22 4.02
223 224 1.683943 CCATGGGATGATGTGTGGAC 58.316 55.000 2.85 0.00 0.00 4.02
224 225 0.106569 GCCATGGGATGATGTGTGGA 60.107 55.000 15.13 0.00 0.00 4.02
225 226 1.111116 GGCCATGGGATGATGTGTGG 61.111 60.000 15.13 0.00 0.00 4.17
226 227 1.449726 CGGCCATGGGATGATGTGTG 61.450 60.000 15.13 0.00 0.00 3.82
227 228 1.152902 CGGCCATGGGATGATGTGT 60.153 57.895 15.13 0.00 0.00 3.72
228 229 2.558286 GCGGCCATGGGATGATGTG 61.558 63.158 15.13 0.00 0.00 3.21
229 230 2.203394 GCGGCCATGGGATGATGT 60.203 61.111 15.13 0.00 0.00 3.06
230 231 3.359523 CGCGGCCATGGGATGATG 61.360 66.667 15.13 0.00 0.00 3.07
243 244 4.441695 TCTCTTCCTGCTGCGCGG 62.442 66.667 13.18 13.18 34.23 6.46
244 245 2.884685 CTCTCTTCCTGCTGCGCG 60.885 66.667 0.00 0.00 0.00 6.86
245 246 1.519013 CTCTCTCTTCCTGCTGCGC 60.519 63.158 0.00 0.00 0.00 6.09
246 247 0.101040 CTCTCTCTCTTCCTGCTGCG 59.899 60.000 0.00 0.00 0.00 5.18
247 248 1.406539 CTCTCTCTCTCTTCCTGCTGC 59.593 57.143 0.00 0.00 0.00 5.25
248 249 2.947652 CTCTCTCTCTCTCTTCCTGCTG 59.052 54.545 0.00 0.00 0.00 4.41
249 250 2.684927 GCTCTCTCTCTCTCTTCCTGCT 60.685 54.545 0.00 0.00 0.00 4.24
250 251 1.678101 GCTCTCTCTCTCTCTTCCTGC 59.322 57.143 0.00 0.00 0.00 4.85
251 252 2.947652 CTGCTCTCTCTCTCTCTTCCTG 59.052 54.545 0.00 0.00 0.00 3.86
252 253 2.578021 ACTGCTCTCTCTCTCTCTTCCT 59.422 50.000 0.00 0.00 0.00 3.36
253 254 2.945668 GACTGCTCTCTCTCTCTCTTCC 59.054 54.545 0.00 0.00 0.00 3.46
254 255 2.945668 GGACTGCTCTCTCTCTCTCTTC 59.054 54.545 0.00 0.00 0.00 2.87
255 256 2.308570 TGGACTGCTCTCTCTCTCTCTT 59.691 50.000 0.00 0.00 0.00 2.85
256 257 1.915489 TGGACTGCTCTCTCTCTCTCT 59.085 52.381 0.00 0.00 0.00 3.10
257 258 2.418368 TGGACTGCTCTCTCTCTCTC 57.582 55.000 0.00 0.00 0.00 3.20
258 259 2.897271 TTGGACTGCTCTCTCTCTCT 57.103 50.000 0.00 0.00 0.00 3.10
259 260 2.417243 GCTTTGGACTGCTCTCTCTCTC 60.417 54.545 0.00 0.00 0.00 3.20
260 261 1.550072 GCTTTGGACTGCTCTCTCTCT 59.450 52.381 0.00 0.00 0.00 3.10
261 262 1.274728 TGCTTTGGACTGCTCTCTCTC 59.725 52.381 0.00 0.00 0.00 3.20
262 263 1.275856 CTGCTTTGGACTGCTCTCTCT 59.724 52.381 0.00 0.00 0.00 3.10
263 264 1.274728 TCTGCTTTGGACTGCTCTCTC 59.725 52.381 0.00 0.00 0.00 3.20
264 265 1.346062 TCTGCTTTGGACTGCTCTCT 58.654 50.000 0.00 0.00 0.00 3.10
265 266 2.175878 TTCTGCTTTGGACTGCTCTC 57.824 50.000 0.00 0.00 0.00 3.20
266 267 2.225467 GTTTCTGCTTTGGACTGCTCT 58.775 47.619 0.00 0.00 0.00 4.09
267 268 1.069636 CGTTTCTGCTTTGGACTGCTC 60.070 52.381 0.00 0.00 0.00 4.26
268 269 0.947244 CGTTTCTGCTTTGGACTGCT 59.053 50.000 0.00 0.00 0.00 4.24
269 270 0.040067 CCGTTTCTGCTTTGGACTGC 60.040 55.000 0.00 0.00 0.00 4.40
270 271 1.264288 GTCCGTTTCTGCTTTGGACTG 59.736 52.381 2.57 0.00 44.47 3.51
271 272 1.594331 GTCCGTTTCTGCTTTGGACT 58.406 50.000 2.57 0.00 44.47 3.85
272 273 0.234884 CGTCCGTTTCTGCTTTGGAC 59.765 55.000 0.00 0.00 44.43 4.02
273 274 1.503818 GCGTCCGTTTCTGCTTTGGA 61.504 55.000 0.00 0.00 0.00 3.53
274 275 1.082104 GCGTCCGTTTCTGCTTTGG 60.082 57.895 0.00 0.00 0.00 3.28
275 276 0.657368 GTGCGTCCGTTTCTGCTTTG 60.657 55.000 0.00 0.00 0.00 2.77
276 277 1.647084 GTGCGTCCGTTTCTGCTTT 59.353 52.632 0.00 0.00 0.00 3.51
277 278 2.594962 CGTGCGTCCGTTTCTGCTT 61.595 57.895 0.00 0.00 0.00 3.91
278 279 3.036084 CGTGCGTCCGTTTCTGCT 61.036 61.111 0.00 0.00 0.00 4.24
279 280 4.719616 GCGTGCGTCCGTTTCTGC 62.720 66.667 0.00 0.00 0.00 4.26
280 281 4.409588 CGCGTGCGTCCGTTTCTG 62.410 66.667 6.00 0.00 34.35 3.02
299 300 4.147322 GAACATCGTGCCCGTGCG 62.147 66.667 0.00 0.00 41.78 5.34
300 301 3.047280 TGAACATCGTGCCCGTGC 61.047 61.111 0.00 0.00 38.26 5.34
301 302 1.298157 ATGTGAACATCGTGCCCGTG 61.298 55.000 0.00 0.00 35.01 4.94
302 303 1.003839 ATGTGAACATCGTGCCCGT 60.004 52.632 0.00 0.00 35.01 5.28
312 313 1.737735 CTCGCTCGCCATGTGAACA 60.738 57.895 0.00 0.00 0.00 3.18
401 406 3.597728 CGCGAGGGCCTCTAGTCC 61.598 72.222 29.81 12.33 35.02 3.85
440 453 4.710167 TGGAGACGGCGAGGACGA 62.710 66.667 16.62 0.00 42.66 4.20
441 454 4.477975 GTGGAGACGGCGAGGACG 62.478 72.222 16.62 0.00 41.40 4.79
442 455 4.131088 GGTGGAGACGGCGAGGAC 62.131 72.222 16.62 1.19 0.00 3.85
560 589 1.299544 GCCGTTTGGGTTTTCCGTG 60.300 57.895 0.00 0.00 41.82 4.94
592 621 2.029073 CTTCCGGTATCCGCGCAT 59.971 61.111 8.75 0.00 46.86 4.73
706 1248 1.605058 TTAGACGAGCCAGCCCACTC 61.605 60.000 0.00 0.00 0.00 3.51
719 1261 4.796231 AGCGTGGCGGCTTAGACG 62.796 66.667 11.43 12.98 41.39 4.18
721 1263 4.451150 CCAGCGTGGCGGCTTAGA 62.451 66.667 11.43 0.00 42.53 2.10
781 1331 1.481056 GGGTGTGTGTAGGCAGGAGT 61.481 60.000 0.00 0.00 0.00 3.85
782 1332 1.296715 GGGTGTGTGTAGGCAGGAG 59.703 63.158 0.00 0.00 0.00 3.69
783 1333 2.221299 GGGGTGTGTGTAGGCAGGA 61.221 63.158 0.00 0.00 0.00 3.86
847 1401 4.308899 AGCAGCCTGTAAGTAGTAATCG 57.691 45.455 0.00 0.00 0.00 3.34
848 1402 4.811557 CCAAGCAGCCTGTAAGTAGTAATC 59.188 45.833 0.00 0.00 0.00 1.75
936 1503 3.066814 CAAGGCAAGGCAGGCTCC 61.067 66.667 0.00 0.00 44.47 4.70
1026 1598 3.314331 AGGCTGTCCCAGTCCACG 61.314 66.667 0.00 0.00 36.67 4.94
1176 1748 0.900647 ATAGAGGAGGGAATCGGCGG 60.901 60.000 7.21 0.00 0.00 6.13
1177 1749 0.528470 GATAGAGGAGGGAATCGGCG 59.472 60.000 0.00 0.00 0.00 6.46
1178 1750 1.822371 GAGATAGAGGAGGGAATCGGC 59.178 57.143 0.00 0.00 0.00 5.54
1179 1751 3.010138 AGAGAGATAGAGGAGGGAATCGG 59.990 52.174 0.00 0.00 0.00 4.18
1180 1752 4.261801 GAGAGAGATAGAGGAGGGAATCG 58.738 52.174 0.00 0.00 0.00 3.34
1181 1753 4.569865 GGGAGAGAGATAGAGGAGGGAATC 60.570 54.167 0.00 0.00 0.00 2.52
1182 1754 3.336694 GGGAGAGAGATAGAGGAGGGAAT 59.663 52.174 0.00 0.00 0.00 3.01
1183 1755 2.719705 GGGAGAGAGATAGAGGAGGGAA 59.280 54.545 0.00 0.00 0.00 3.97
1192 1764 2.235016 CGAAGTGGGGGAGAGAGATAG 58.765 57.143 0.00 0.00 0.00 2.08
1193 1765 1.754555 GCGAAGTGGGGGAGAGAGATA 60.755 57.143 0.00 0.00 0.00 1.98
1194 1766 1.045911 GCGAAGTGGGGGAGAGAGAT 61.046 60.000 0.00 0.00 0.00 2.75
1195 1767 1.682684 GCGAAGTGGGGGAGAGAGA 60.683 63.158 0.00 0.00 0.00 3.10
1208 1780 4.821589 GAGGGGACGCAGGCGAAG 62.822 72.222 21.62 0.00 42.83 3.79
1212 1784 4.785453 CAAGGAGGGGACGCAGGC 62.785 72.222 0.00 0.00 0.00 4.85
1251 1827 3.554960 GGCGATCACCTTATATGCAGACA 60.555 47.826 0.00 0.00 0.00 3.41
1257 1833 1.066858 AGCCGGCGATCACCTTATATG 60.067 52.381 23.20 0.00 0.00 1.78
1278 1864 2.211468 GACCCAAATTCCGGCCCTCT 62.211 60.000 0.00 0.00 0.00 3.69
1283 1869 2.112815 CGAGGACCCAAATTCCGGC 61.113 63.158 0.00 0.00 38.29 6.13
1310 1896 0.688087 GTCCCCCAGATCCGAACTCT 60.688 60.000 0.00 0.00 0.00 3.24
1336 1922 2.028839 CCAATCATGGTCTGCAAAGCAA 60.029 45.455 0.00 0.00 42.18 3.91
1337 1923 1.546923 CCAATCATGGTCTGCAAAGCA 59.453 47.619 0.00 0.00 42.18 3.91
1338 1924 1.134907 CCCAATCATGGTCTGCAAAGC 60.135 52.381 0.00 0.00 46.01 3.51
1339 1925 1.479323 CCCCAATCATGGTCTGCAAAG 59.521 52.381 0.00 0.00 46.01 2.77
1340 1926 1.559368 CCCCAATCATGGTCTGCAAA 58.441 50.000 0.00 0.00 46.01 3.68
1341 1927 0.324552 CCCCCAATCATGGTCTGCAA 60.325 55.000 0.00 0.00 46.01 4.08
1349 1935 5.823312 TCAGAATGATATCCCCCAATCATG 58.177 41.667 0.00 0.00 42.56 3.07
1362 1948 7.675619 TGGATATTCCTAGCTGTCAGAATGATA 59.324 37.037 3.32 0.00 42.49 2.15
1425 2018 0.387929 TACTGAATCCACGATCGGCC 59.612 55.000 20.98 0.00 0.00 6.13
1499 2092 2.121291 TGTGCAAAGACCACAAGTGA 57.879 45.000 0.94 0.00 40.00 3.41
1546 2139 8.966069 TTGATTAACGATCCATTAATGTGGTA 57.034 30.769 14.25 2.00 40.27 3.25
1570 2163 7.812690 ACGAACTCCTTGTAAACCTTAAATT 57.187 32.000 0.00 0.00 0.00 1.82
1712 2305 6.952743 ACAACAATGATTCATCTCGCTATTC 58.047 36.000 0.00 0.00 0.00 1.75
1718 2311 8.900511 ACAAATTACAACAATGATTCATCTCG 57.099 30.769 0.00 0.00 0.00 4.04
1766 2359 9.582648 GGGTAAGATCCTTTTATTTTGGCTATA 57.417 33.333 0.00 0.00 0.00 1.31
1767 2360 7.230712 CGGGTAAGATCCTTTTATTTTGGCTAT 59.769 37.037 0.00 0.00 0.00 2.97
1787 2380 0.603439 GGAAACGCCTTCACGGGTAA 60.603 55.000 0.82 0.00 35.55 2.85
1800 2393 0.673644 AGGTGATCGGCAAGGAAACG 60.674 55.000 0.00 0.00 0.00 3.60
1849 2445 4.622313 TGTATTGTTTACGACCTTACGCTG 59.378 41.667 0.00 0.00 36.70 5.18
1851 2447 5.707411 ATGTATTGTTTACGACCTTACGC 57.293 39.130 0.00 0.00 36.70 4.42
1853 2449 8.470040 TGAGAATGTATTGTTTACGACCTTAC 57.530 34.615 0.00 0.00 0.00 2.34
1855 2451 9.095065 GTATGAGAATGTATTGTTTACGACCTT 57.905 33.333 0.00 0.00 0.00 3.50
1856 2452 8.255206 TGTATGAGAATGTATTGTTTACGACCT 58.745 33.333 0.00 0.00 0.00 3.85
1857 2453 8.325997 GTGTATGAGAATGTATTGTTTACGACC 58.674 37.037 0.00 0.00 0.00 4.79
1858 2454 9.084164 AGTGTATGAGAATGTATTGTTTACGAC 57.916 33.333 0.00 0.00 0.00 4.34
2004 2601 5.373812 AACATAAAGGGGAGGACATACTG 57.626 43.478 0.00 0.00 0.00 2.74
2037 2634 2.089980 ACAGCATGCAGTGAAATCTCC 58.910 47.619 21.98 0.00 42.53 3.71
2135 2732 6.070656 TGAAAGGTTCCTGAAAAGTCATGAT 58.929 36.000 0.00 0.00 31.85 2.45
2249 2846 6.982724 AGCTATAGCCGTAAAAGTAAACGAAT 59.017 34.615 21.17 0.00 43.38 3.34
2264 2861 6.926272 AGAGTCTTTTGAAATAGCTATAGCCG 59.074 38.462 21.17 0.00 43.38 5.52
2309 2906 5.452078 TGGCTTTTGTTCCAATAGACTTG 57.548 39.130 2.70 0.00 0.00 3.16
2530 3127 1.003696 GCCTCAAGCCAAGTACCTTCT 59.996 52.381 0.00 0.00 34.35 2.85
2560 3157 6.214412 ATGTTAACATAAGGGAAATGCCCAAA 59.786 34.615 19.51 0.00 46.97 3.28
2720 3318 8.093307 TGGATTGAAGCATCTACATATCTCTTC 58.907 37.037 0.00 0.00 0.00 2.87
2897 3495 8.627403 CAAGTTCTATAATGGAAGGTACGACTA 58.373 37.037 0.00 0.00 0.00 2.59
2946 3544 2.621556 AGCTCTGAACCTCTTCCTCT 57.378 50.000 0.00 0.00 0.00 3.69
2963 3561 3.753272 ACAACACACATCCACAGATAAGC 59.247 43.478 0.00 0.00 0.00 3.09
3003 3601 9.492973 AAATAATTTGGTATATGCATTTGCTCC 57.507 29.630 3.54 2.95 42.66 4.70
3033 3631 5.231702 CAATGATTCACACCATTTTGCAGA 58.768 37.500 0.00 0.00 31.25 4.26
3041 3639 2.381911 GAGGCCAATGATTCACACCAT 58.618 47.619 5.01 0.00 0.00 3.55
3091 3982 9.886132 AGTTACTACAAAACATCGAGGATTTAT 57.114 29.630 3.06 0.00 0.00 1.40
3208 4325 2.215196 GTTGCAAGTTACACCCGAGAA 58.785 47.619 0.00 0.00 0.00 2.87
3212 4329 0.658897 AACGTTGCAAGTTACACCCG 59.341 50.000 0.00 0.00 0.00 5.28
3237 4354 7.976734 TGCACGAAAAAGGAAAAGAAAATAGAA 59.023 29.630 0.00 0.00 0.00 2.10
3239 4356 7.555582 GTGCACGAAAAAGGAAAAGAAAATAG 58.444 34.615 0.00 0.00 0.00 1.73
3286 4403 2.552315 ACGGTGTACTGCAAAAGATTGG 59.448 45.455 0.00 0.00 37.02 3.16
3292 4409 2.747989 TCAAACACGGTGTACTGCAAAA 59.252 40.909 15.11 0.00 0.00 2.44
3371 4488 1.065854 AGAGCAACTGGGGAAGAATCG 60.066 52.381 0.00 0.00 0.00 3.34
3383 4500 2.805099 CGAGAAAGCAGAAAGAGCAACT 59.195 45.455 0.00 0.00 0.00 3.16
3553 4677 3.388345 TGGCGTCATATAATTGCGGTA 57.612 42.857 0.00 0.00 0.00 4.02
3556 4680 5.685068 TGAAAAATGGCGTCATATAATTGCG 59.315 36.000 1.27 0.00 32.44 4.85
3694 4818 1.909700 TGCCTTCCTTGTTCCACATC 58.090 50.000 0.00 0.00 0.00 3.06
3721 4845 6.596888 TCTGAGCATGTAATCCTTTGAAGAAG 59.403 38.462 0.00 0.00 0.00 2.85
3766 4890 2.689553 TCATCAGCAGTAATGCGGAA 57.310 45.000 21.06 3.89 41.79 4.30
3984 5108 1.424302 CCATGGGGCTCTCAAGATGAT 59.576 52.381 2.85 0.00 0.00 2.45
4037 5161 7.775561 TCAAAGTATCAGATACTCAGAGCTACA 59.224 37.037 21.29 0.82 44.94 2.74
4057 5183 6.256053 ACACCTATTCCATTCCATTCAAAGT 58.744 36.000 0.00 0.00 0.00 2.66
4059 5185 6.496565 ACAACACCTATTCCATTCCATTCAAA 59.503 34.615 0.00 0.00 0.00 2.69
4061 5187 5.579047 ACAACACCTATTCCATTCCATTCA 58.421 37.500 0.00 0.00 0.00 2.57
4085 5225 4.592485 CAGAACTACTTCTGGACAGTGT 57.408 45.455 0.00 0.00 46.87 3.55
4191 5343 9.740239 TGAAAGATTTATTGCTATTGCTTCATC 57.260 29.630 0.00 0.00 40.48 2.92
4214 5366 2.350007 GGCGCGAAACTTACAACATGAA 60.350 45.455 12.10 0.00 0.00 2.57
4215 5367 1.195900 GGCGCGAAACTTACAACATGA 59.804 47.619 12.10 0.00 0.00 3.07
4226 5378 0.808847 CTTAGGGTAGGGCGCGAAAC 60.809 60.000 12.10 0.44 34.93 2.78
4538 5694 3.069318 GAGAGGTTCGAGGGCGGT 61.069 66.667 0.00 0.00 38.28 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.