Multiple sequence alignment - TraesCS1D01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G245500 chr1D 100.000 2282 0 0 1 2282 337210397 337212678 0.000000e+00 4215.0
1 TraesCS1D01G245500 chr1A 97.196 1605 39 4 1 1601 435375150 435376752 0.000000e+00 2710.0
2 TraesCS1D01G245500 chr1A 91.554 296 8 2 1635 1913 435376750 435377045 2.130000e-105 392.0
3 TraesCS1D01G245500 chr1A 98.396 187 3 0 2096 2282 435377057 435377243 1.690000e-86 329.0
4 TraesCS1D01G245500 chr1B 93.318 1736 48 19 208 1913 452564803 452566500 0.000000e+00 2501.0
5 TraesCS1D01G245500 chr1B 94.515 237 9 2 1 233 452564501 452564737 1.670000e-96 363.0
6 TraesCS1D01G245500 chr1B 97.283 184 5 0 2096 2279 452566512 452566695 1.700000e-81 313.0
7 TraesCS1D01G245500 chr5B 90.051 1186 81 12 758 1913 666196353 666195175 0.000000e+00 1502.0
8 TraesCS1D01G245500 chr5B 79.082 196 30 10 777 969 28234950 28234763 8.560000e-25 124.0
9 TraesCS1D01G245500 chr5D 89.798 1186 83 20 757 1919 528972199 528971029 0.000000e+00 1485.0
10 TraesCS1D01G245500 chr5D 92.632 190 10 1 1908 2097 205372276 205372461 1.040000e-68 270.0
11 TraesCS1D01G245500 chr5D 90.206 194 12 4 1908 2097 421111720 421111910 1.750000e-61 246.0
12 TraesCS1D01G245500 chr5D 96.296 108 4 0 2175 2282 528970959 528970852 6.480000e-41 178.0
13 TraesCS1D01G245500 chr5D 91.379 58 3 1 2096 2151 528971023 528970966 6.760000e-11 78.7
14 TraesCS1D01G245500 chr5A 88.598 956 70 16 987 1913 657199168 657198223 0.000000e+00 1125.0
15 TraesCS1D01G245500 chr3D 89.286 532 39 12 236 757 61933320 61933843 0.000000e+00 651.0
16 TraesCS1D01G245500 chr6D 89.286 532 37 14 237 757 15120086 15120608 0.000000e+00 649.0
17 TraesCS1D01G245500 chr6D 81.176 170 23 9 777 944 152256280 152256442 6.620000e-26 128.0
18 TraesCS1D01G245500 chr7B 89.077 531 42 10 236 757 499716022 499715499 0.000000e+00 645.0
19 TraesCS1D01G245500 chr7B 90.556 180 15 1 1914 2091 373078604 373078425 1.050000e-58 237.0
20 TraesCS1D01G245500 chr4D 88.889 531 41 13 237 757 386933120 386933642 2.470000e-179 638.0
21 TraesCS1D01G245500 chr3A 88.889 531 40 14 237 757 55446565 55447086 8.890000e-179 636.0
22 TraesCS1D01G245500 chr3A 92.063 189 11 2 1908 2096 673431538 673431354 1.740000e-66 263.0
23 TraesCS1D01G245500 chr3A 83.234 167 19 8 780 944 9129650 9129491 6.570000e-31 145.0
24 TraesCS1D01G245500 chr4B 88.847 529 41 13 237 755 483772079 483772599 3.200000e-178 634.0
25 TraesCS1D01G245500 chr4B 88.469 529 43 13 237 755 82006070 82006590 6.920000e-175 623.0
26 TraesCS1D01G245500 chr4B 91.282 195 10 6 1908 2097 242718646 242718838 2.250000e-65 259.0
27 TraesCS1D01G245500 chr6B 94.764 191 8 1 1908 2098 52338258 52338446 1.710000e-76 296.0
28 TraesCS1D01G245500 chr6B 81.287 171 21 11 777 944 276732232 276732394 6.620000e-26 128.0
29 TraesCS1D01G245500 chr6A 93.684 190 10 2 1908 2097 370672129 370672316 1.330000e-72 283.0
30 TraesCS1D01G245500 chr2D 89.796 196 13 2 1908 2103 547609972 547610160 6.300000e-61 244.0
31 TraesCS1D01G245500 chr7A 88.947 190 16 2 1908 2097 200895047 200894863 1.760000e-56 230.0
32 TraesCS1D01G245500 chr2B 83.544 158 17 9 780 936 236703603 236703454 3.060000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G245500 chr1D 337210397 337212678 2281 False 4215.000000 4215 100.000000 1 2282 1 chr1D.!!$F1 2281
1 TraesCS1D01G245500 chr1A 435375150 435377243 2093 False 1143.666667 2710 95.715333 1 2282 3 chr1A.!!$F1 2281
2 TraesCS1D01G245500 chr1B 452564501 452566695 2194 False 1059.000000 2501 95.038667 1 2279 3 chr1B.!!$F1 2278
3 TraesCS1D01G245500 chr5B 666195175 666196353 1178 True 1502.000000 1502 90.051000 758 1913 1 chr5B.!!$R2 1155
4 TraesCS1D01G245500 chr5D 528970852 528972199 1347 True 580.566667 1485 92.491000 757 2282 3 chr5D.!!$R1 1525
5 TraesCS1D01G245500 chr5A 657198223 657199168 945 True 1125.000000 1125 88.598000 987 1913 1 chr5A.!!$R1 926
6 TraesCS1D01G245500 chr3D 61933320 61933843 523 False 651.000000 651 89.286000 236 757 1 chr3D.!!$F1 521
7 TraesCS1D01G245500 chr6D 15120086 15120608 522 False 649.000000 649 89.286000 237 757 1 chr6D.!!$F1 520
8 TraesCS1D01G245500 chr7B 499715499 499716022 523 True 645.000000 645 89.077000 236 757 1 chr7B.!!$R2 521
9 TraesCS1D01G245500 chr4D 386933120 386933642 522 False 638.000000 638 88.889000 237 757 1 chr4D.!!$F1 520
10 TraesCS1D01G245500 chr3A 55446565 55447086 521 False 636.000000 636 88.889000 237 757 1 chr3A.!!$F1 520
11 TraesCS1D01G245500 chr4B 483772079 483772599 520 False 634.000000 634 88.847000 237 755 1 chr4B.!!$F3 518
12 TraesCS1D01G245500 chr4B 82006070 82006590 520 False 623.000000 623 88.469000 237 755 1 chr4B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.035056 CCTTTCCTGCCCTACACCAG 60.035 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2122 0.315251 GCTCAACAAGCCCTGGAAAC 59.685 55.0 0.0 0.0 45.92 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.703014 GCAGGCCATCTCCTCCATGA 61.703 60.000 5.01 0.00 33.25 3.07
103 104 1.630878 TCTTCCTTCTCCCTTTCCTGC 59.369 52.381 0.00 0.00 0.00 4.85
113 114 0.035056 CCTTTCCTGCCCTACACCAG 60.035 60.000 0.00 0.00 0.00 4.00
139 142 6.204882 CCCCTCCTTAGCATTCTTAATTTACG 59.795 42.308 0.00 0.00 0.00 3.18
162 165 5.628193 CGTTGTACTGTCTTGTACCTGTAAG 59.372 44.000 0.00 0.00 41.34 2.34
190 193 2.930826 TGTGAGGACCTTTCTGTTCC 57.069 50.000 0.00 0.00 0.00 3.62
305 406 9.613957 CTTGGAACTATATATGAACTACTGACG 57.386 37.037 0.00 0.00 0.00 4.35
466 568 3.831333 TGTCATTGTATGGCCATTTGTGT 59.169 39.130 26.37 0.29 32.84 3.72
730 843 6.263168 GGAATTCAGACCAATTCAATACGGAT 59.737 38.462 7.93 0.00 42.40 4.18
734 847 4.752101 CAGACCAATTCAATACGGATCTCC 59.248 45.833 0.00 0.00 0.00 3.71
913 1031 7.792374 ATAGAACGCTCACATGTCATATTTT 57.208 32.000 0.00 0.00 0.00 1.82
946 1064 1.078637 GTAGGTGGACCGCCCTTTC 60.079 63.158 20.91 5.17 42.08 2.62
953 1071 3.613030 GTGGACCGCCCTTTCTAAAATA 58.387 45.455 0.00 0.00 35.38 1.40
1011 1135 2.688477 GAGATGGGAATGGAGGAGTCT 58.312 52.381 0.00 0.00 0.00 3.24
1182 1306 3.753434 CGCGAGCTGTCCTCCACT 61.753 66.667 0.00 0.00 37.27 4.00
1618 1789 9.783256 CATATCATTATATGACACCAATGCAAG 57.217 33.333 1.23 0.00 45.37 4.01
1619 1790 9.743581 ATATCATTATATGACACCAATGCAAGA 57.256 29.630 0.00 0.00 43.01 3.02
1752 1923 4.141505 TGTCAATGTTCCTTGTTCTGGAGA 60.142 41.667 0.00 0.00 34.76 3.71
1815 2002 4.093408 TGTTTCAATCGCTGCTAGATTCAC 59.907 41.667 0.00 0.00 36.30 3.18
1827 2014 4.101585 TGCTAGATTCACCATAGTCAAGGG 59.898 45.833 0.00 0.00 0.00 3.95
1911 2100 8.028938 ACATTAGTAAAATGATCACCAAGTTGC 58.971 33.333 0.00 0.00 0.00 4.17
1912 2101 7.759489 TTAGTAAAATGATCACCAAGTTGCT 57.241 32.000 0.00 0.00 0.00 3.91
1913 2102 6.017400 AGTAAAATGATCACCAAGTTGCTG 57.983 37.500 0.00 0.00 0.00 4.41
1914 2103 4.942761 AAAATGATCACCAAGTTGCTGT 57.057 36.364 0.00 0.00 0.00 4.40
1917 2106 1.948834 TGATCACCAAGTTGCTGTGTG 59.051 47.619 10.76 7.61 0.00 3.82
1918 2107 1.949525 GATCACCAAGTTGCTGTGTGT 59.050 47.619 10.76 3.57 0.00 3.72
1919 2108 1.093972 TCACCAAGTTGCTGTGTGTG 58.906 50.000 10.76 6.72 0.00 3.82
1921 2110 1.298563 CCAAGTTGCTGTGTGTGCG 60.299 57.895 0.00 0.00 0.00 5.34
1923 2112 0.862701 CAAGTTGCTGTGTGTGCGTG 60.863 55.000 0.00 0.00 0.00 5.34
1924 2113 1.305219 AAGTTGCTGTGTGTGCGTGT 61.305 50.000 0.00 0.00 0.00 4.49
1925 2114 1.583451 GTTGCTGTGTGTGCGTGTG 60.583 57.895 0.00 0.00 0.00 3.82
1926 2115 2.037702 TTGCTGTGTGTGCGTGTGT 61.038 52.632 0.00 0.00 0.00 3.72
1927 2116 1.581727 TTGCTGTGTGTGCGTGTGTT 61.582 50.000 0.00 0.00 0.00 3.32
1928 2117 1.583451 GCTGTGTGTGCGTGTGTTG 60.583 57.895 0.00 0.00 0.00 3.33
1929 2118 1.583451 CTGTGTGTGCGTGTGTTGC 60.583 57.895 0.00 0.00 0.00 4.17
1930 2119 1.980951 CTGTGTGTGCGTGTGTTGCT 61.981 55.000 0.00 0.00 0.00 3.91
1931 2120 1.136565 GTGTGTGCGTGTGTTGCTT 59.863 52.632 0.00 0.00 0.00 3.91
1932 2121 0.455972 GTGTGTGCGTGTGTTGCTTT 60.456 50.000 0.00 0.00 0.00 3.51
1933 2122 0.455802 TGTGTGCGTGTGTTGCTTTG 60.456 50.000 0.00 0.00 0.00 2.77
1934 2123 0.455972 GTGTGCGTGTGTTGCTTTGT 60.456 50.000 0.00 0.00 0.00 2.83
1935 2124 0.242286 TGTGCGTGTGTTGCTTTGTT 59.758 45.000 0.00 0.00 0.00 2.83
1936 2125 1.336332 TGTGCGTGTGTTGCTTTGTTT 60.336 42.857 0.00 0.00 0.00 2.83
1937 2126 1.320259 GTGCGTGTGTTGCTTTGTTTC 59.680 47.619 0.00 0.00 0.00 2.78
1938 2127 0.920664 GCGTGTGTTGCTTTGTTTCC 59.079 50.000 0.00 0.00 0.00 3.13
1939 2128 1.734047 GCGTGTGTTGCTTTGTTTCCA 60.734 47.619 0.00 0.00 0.00 3.53
1940 2129 2.184448 CGTGTGTTGCTTTGTTTCCAG 58.816 47.619 0.00 0.00 0.00 3.86
1941 2130 2.539476 GTGTGTTGCTTTGTTTCCAGG 58.461 47.619 0.00 0.00 0.00 4.45
1942 2131 1.480137 TGTGTTGCTTTGTTTCCAGGG 59.520 47.619 0.00 0.00 0.00 4.45
1943 2132 0.463620 TGTTGCTTTGTTTCCAGGGC 59.536 50.000 0.00 0.00 0.00 5.19
1944 2133 0.752658 GTTGCTTTGTTTCCAGGGCT 59.247 50.000 0.00 0.00 0.00 5.19
1945 2134 1.138859 GTTGCTTTGTTTCCAGGGCTT 59.861 47.619 0.00 0.00 0.00 4.35
1946 2135 0.752054 TGCTTTGTTTCCAGGGCTTG 59.248 50.000 0.00 0.00 0.00 4.01
1947 2136 0.752658 GCTTTGTTTCCAGGGCTTGT 59.247 50.000 0.00 0.00 0.00 3.16
1948 2137 1.138859 GCTTTGTTTCCAGGGCTTGTT 59.861 47.619 0.00 0.00 0.00 2.83
1949 2138 2.825205 CTTTGTTTCCAGGGCTTGTTG 58.175 47.619 0.00 0.00 0.00 3.33
1950 2139 2.151502 TTGTTTCCAGGGCTTGTTGA 57.848 45.000 0.00 0.00 0.00 3.18
1951 2140 1.691196 TGTTTCCAGGGCTTGTTGAG 58.309 50.000 0.00 0.00 0.00 3.02
1960 2149 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
1961 2150 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
1962 2151 1.572085 CTTGTTGAGCTGTGCCCTCG 61.572 60.000 0.00 0.00 31.98 4.63
1963 2152 2.743928 GTTGAGCTGTGCCCTCGG 60.744 66.667 0.00 0.00 31.98 4.63
1976 2165 2.951229 CCCTCGGCATTAACCCTATT 57.049 50.000 0.00 0.00 0.00 1.73
1977 2166 3.223674 CCCTCGGCATTAACCCTATTT 57.776 47.619 0.00 0.00 0.00 1.40
1978 2167 3.146847 CCCTCGGCATTAACCCTATTTC 58.853 50.000 0.00 0.00 0.00 2.17
1979 2168 3.146847 CCTCGGCATTAACCCTATTTCC 58.853 50.000 0.00 0.00 0.00 3.13
1980 2169 3.181443 CCTCGGCATTAACCCTATTTCCT 60.181 47.826 0.00 0.00 0.00 3.36
1981 2170 4.041198 CCTCGGCATTAACCCTATTTCCTA 59.959 45.833 0.00 0.00 0.00 2.94
1982 2171 4.964593 TCGGCATTAACCCTATTTCCTAC 58.035 43.478 0.00 0.00 0.00 3.18
1983 2172 4.070009 CGGCATTAACCCTATTTCCTACC 58.930 47.826 0.00 0.00 0.00 3.18
1984 2173 4.202430 CGGCATTAACCCTATTTCCTACCT 60.202 45.833 0.00 0.00 0.00 3.08
1985 2174 5.689297 CGGCATTAACCCTATTTCCTACCTT 60.689 44.000 0.00 0.00 0.00 3.50
1986 2175 5.535030 GGCATTAACCCTATTTCCTACCTTG 59.465 44.000 0.00 0.00 0.00 3.61
1987 2176 6.127101 GCATTAACCCTATTTCCTACCTTGT 58.873 40.000 0.00 0.00 0.00 3.16
1988 2177 7.284820 GCATTAACCCTATTTCCTACCTTGTA 58.715 38.462 0.00 0.00 0.00 2.41
1989 2178 7.942894 GCATTAACCCTATTTCCTACCTTGTAT 59.057 37.037 0.00 0.00 0.00 2.29
1990 2179 9.284968 CATTAACCCTATTTCCTACCTTGTATG 57.715 37.037 0.00 0.00 0.00 2.39
1991 2180 6.903340 AACCCTATTTCCTACCTTGTATGT 57.097 37.500 0.00 0.00 0.00 2.29
1992 2181 6.496144 ACCCTATTTCCTACCTTGTATGTC 57.504 41.667 0.00 0.00 0.00 3.06
1993 2182 6.210522 ACCCTATTTCCTACCTTGTATGTCT 58.789 40.000 0.00 0.00 0.00 3.41
1994 2183 6.099845 ACCCTATTTCCTACCTTGTATGTCTG 59.900 42.308 0.00 0.00 0.00 3.51
1995 2184 6.099845 CCCTATTTCCTACCTTGTATGTCTGT 59.900 42.308 0.00 0.00 0.00 3.41
1996 2185 6.986817 CCTATTTCCTACCTTGTATGTCTGTG 59.013 42.308 0.00 0.00 0.00 3.66
1997 2186 6.620877 ATTTCCTACCTTGTATGTCTGTGA 57.379 37.500 0.00 0.00 0.00 3.58
1998 2187 5.661056 TTCCTACCTTGTATGTCTGTGAG 57.339 43.478 0.00 0.00 0.00 3.51
1999 2188 4.930696 TCCTACCTTGTATGTCTGTGAGA 58.069 43.478 0.00 0.00 0.00 3.27
2000 2189 4.705507 TCCTACCTTGTATGTCTGTGAGAC 59.294 45.833 0.00 0.00 45.26 3.36
2001 2190 4.707448 CCTACCTTGTATGTCTGTGAGACT 59.293 45.833 5.39 0.00 45.27 3.24
2002 2191 5.186021 CCTACCTTGTATGTCTGTGAGACTT 59.814 44.000 5.39 1.93 45.27 3.01
2003 2192 4.887748 ACCTTGTATGTCTGTGAGACTTG 58.112 43.478 5.39 0.00 45.27 3.16
2004 2193 4.345257 ACCTTGTATGTCTGTGAGACTTGT 59.655 41.667 5.39 0.00 45.27 3.16
2005 2194 4.687948 CCTTGTATGTCTGTGAGACTTGTG 59.312 45.833 5.39 0.00 45.27 3.33
2006 2195 4.937201 TGTATGTCTGTGAGACTTGTGT 57.063 40.909 5.39 0.00 45.27 3.72
2007 2196 4.620982 TGTATGTCTGTGAGACTTGTGTG 58.379 43.478 5.39 0.00 45.27 3.82
2008 2197 3.827008 ATGTCTGTGAGACTTGTGTGT 57.173 42.857 5.39 0.00 45.27 3.72
2009 2198 2.892374 TGTCTGTGAGACTTGTGTGTG 58.108 47.619 5.39 0.00 45.27 3.82
2010 2199 2.233676 TGTCTGTGAGACTTGTGTGTGT 59.766 45.455 5.39 0.00 45.27 3.72
2011 2200 2.604914 GTCTGTGAGACTTGTGTGTGTG 59.395 50.000 0.00 0.00 41.88 3.82
2012 2201 2.233676 TCTGTGAGACTTGTGTGTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
2013 2202 2.345876 TGTGAGACTTGTGTGTGTGTG 58.654 47.619 0.00 0.00 0.00 3.82
2014 2203 2.289382 TGTGAGACTTGTGTGTGTGTGT 60.289 45.455 0.00 0.00 0.00 3.72
2015 2204 2.094258 GTGAGACTTGTGTGTGTGTGTG 59.906 50.000 0.00 0.00 0.00 3.82
2016 2205 2.289382 TGAGACTTGTGTGTGTGTGTGT 60.289 45.455 0.00 0.00 0.00 3.72
2017 2206 2.076100 AGACTTGTGTGTGTGTGTGTG 58.924 47.619 0.00 0.00 0.00 3.82
2018 2207 1.804151 GACTTGTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
2019 2208 1.535028 ACTTGTGTGTGTGTGTGTGTG 59.465 47.619 0.00 0.00 0.00 3.82
2020 2209 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
2021 2210 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2022 2211 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2023 2212 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
2024 2213 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
2025 2214 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
2026 2215 2.031595 GTGTGTGTGTGTGTGTGTTTGA 60.032 45.455 0.00 0.00 0.00 2.69
2027 2216 2.618709 TGTGTGTGTGTGTGTGTTTGAA 59.381 40.909 0.00 0.00 0.00 2.69
2028 2217 2.977169 GTGTGTGTGTGTGTGTTTGAAC 59.023 45.455 0.00 0.00 0.00 3.18
2029 2218 2.030717 TGTGTGTGTGTGTGTTTGAACC 60.031 45.455 0.00 0.00 0.00 3.62
2030 2219 2.227865 GTGTGTGTGTGTGTTTGAACCT 59.772 45.455 0.00 0.00 0.00 3.50
2031 2220 2.887783 TGTGTGTGTGTGTTTGAACCTT 59.112 40.909 0.00 0.00 0.00 3.50
2032 2221 3.241701 GTGTGTGTGTGTTTGAACCTTG 58.758 45.455 0.00 0.00 0.00 3.61
2033 2222 2.887783 TGTGTGTGTGTTTGAACCTTGT 59.112 40.909 0.00 0.00 0.00 3.16
2034 2223 3.319405 TGTGTGTGTGTTTGAACCTTGTT 59.681 39.130 0.00 0.00 0.00 2.83
2035 2224 3.672867 GTGTGTGTGTTTGAACCTTGTTG 59.327 43.478 0.00 0.00 0.00 3.33
2036 2225 3.249917 GTGTGTGTTTGAACCTTGTTGG 58.750 45.455 0.00 0.00 42.93 3.77
2037 2226 3.057174 GTGTGTGTTTGAACCTTGTTGGA 60.057 43.478 0.00 0.00 39.71 3.53
2038 2227 3.766591 TGTGTGTTTGAACCTTGTTGGAT 59.233 39.130 0.00 0.00 39.71 3.41
2039 2228 4.111916 GTGTGTTTGAACCTTGTTGGATG 58.888 43.478 0.00 0.00 39.71 3.51
2040 2229 3.766591 TGTGTTTGAACCTTGTTGGATGT 59.233 39.130 0.00 0.00 39.71 3.06
2041 2230 4.221703 TGTGTTTGAACCTTGTTGGATGTT 59.778 37.500 0.00 0.00 39.71 2.71
2042 2231 5.175127 GTGTTTGAACCTTGTTGGATGTTT 58.825 37.500 0.00 0.00 39.71 2.83
2043 2232 5.063312 GTGTTTGAACCTTGTTGGATGTTTG 59.937 40.000 0.00 0.00 39.71 2.93
2044 2233 4.399004 TTGAACCTTGTTGGATGTTTGG 57.601 40.909 0.00 0.00 39.71 3.28
2045 2234 2.102252 TGAACCTTGTTGGATGTTTGGC 59.898 45.455 0.00 0.00 39.71 4.52
2046 2235 2.086610 ACCTTGTTGGATGTTTGGCT 57.913 45.000 0.00 0.00 39.71 4.75
2047 2236 1.963515 ACCTTGTTGGATGTTTGGCTC 59.036 47.619 0.00 0.00 39.71 4.70
2048 2237 1.068333 CCTTGTTGGATGTTTGGCTCG 60.068 52.381 0.00 0.00 38.35 5.03
2049 2238 0.958091 TTGTTGGATGTTTGGCTCGG 59.042 50.000 0.00 0.00 0.00 4.63
2050 2239 0.893270 TGTTGGATGTTTGGCTCGGG 60.893 55.000 0.00 0.00 0.00 5.14
2051 2240 1.976474 TTGGATGTTTGGCTCGGGC 60.976 57.895 0.00 0.00 37.82 6.13
2052 2241 3.508840 GGATGTTTGGCTCGGGCG 61.509 66.667 0.00 0.00 39.81 6.13
2053 2242 3.508840 GATGTTTGGCTCGGGCGG 61.509 66.667 0.00 0.00 39.81 6.13
2054 2243 4.344865 ATGTTTGGCTCGGGCGGT 62.345 61.111 0.00 0.00 39.81 5.68
2055 2244 3.860930 ATGTTTGGCTCGGGCGGTT 62.861 57.895 0.00 0.00 39.81 4.44
2056 2245 3.292159 GTTTGGCTCGGGCGGTTT 61.292 61.111 0.00 0.00 39.81 3.27
2057 2246 3.291383 TTTGGCTCGGGCGGTTTG 61.291 61.111 0.00 0.00 39.81 2.93
2061 2250 3.670377 GCTCGGGCGGTTTGCTTT 61.670 61.111 0.00 0.00 45.43 3.51
2062 2251 2.329614 GCTCGGGCGGTTTGCTTTA 61.330 57.895 0.00 0.00 45.43 1.85
2063 2252 1.654023 GCTCGGGCGGTTTGCTTTAT 61.654 55.000 0.00 0.00 45.43 1.40
2064 2253 1.658994 CTCGGGCGGTTTGCTTTATA 58.341 50.000 0.00 0.00 45.43 0.98
2065 2254 2.011222 CTCGGGCGGTTTGCTTTATAA 58.989 47.619 0.00 0.00 45.43 0.98
2066 2255 2.616842 CTCGGGCGGTTTGCTTTATAAT 59.383 45.455 0.00 0.00 45.43 1.28
2067 2256 3.806380 TCGGGCGGTTTGCTTTATAATA 58.194 40.909 0.00 0.00 45.43 0.98
2068 2257 4.391155 TCGGGCGGTTTGCTTTATAATAT 58.609 39.130 0.00 0.00 45.43 1.28
2069 2258 5.549347 TCGGGCGGTTTGCTTTATAATATA 58.451 37.500 0.00 0.00 45.43 0.86
2070 2259 5.996513 TCGGGCGGTTTGCTTTATAATATAA 59.003 36.000 0.00 0.00 45.43 0.98
2071 2260 6.485984 TCGGGCGGTTTGCTTTATAATATAAA 59.514 34.615 5.46 5.46 45.43 1.40
2072 2261 6.799925 CGGGCGGTTTGCTTTATAATATAAAG 59.200 38.462 22.11 22.11 45.43 1.85
2079 2268 4.905269 GCTTTATAATATAAAGCGGGGCG 58.095 43.478 30.20 10.34 46.31 6.13
2080 2269 4.632688 GCTTTATAATATAAAGCGGGGCGA 59.367 41.667 30.20 0.05 46.31 5.54
2081 2270 5.122711 GCTTTATAATATAAAGCGGGGCGAA 59.877 40.000 30.20 0.00 46.31 4.70
2082 2271 6.348704 GCTTTATAATATAAAGCGGGGCGAAA 60.349 38.462 30.20 0.57 46.31 3.46
2083 2272 6.730960 TTATAATATAAAGCGGGGCGAAAG 57.269 37.500 0.00 0.00 0.00 2.62
2099 2288 3.551551 CGAAAGCCTTTTTCGGTAACAG 58.448 45.455 12.72 0.00 45.17 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 3.090532 GGAGGGGCTGGTGTAGGG 61.091 72.222 0.00 0.00 0.00 3.53
113 114 3.577805 TTAAGAATGCTAAGGAGGGGC 57.422 47.619 0.00 0.00 0.00 5.80
139 142 6.510536 ACTTACAGGTACAAGACAGTACAAC 58.489 40.000 6.59 0.00 44.76 3.32
162 165 2.568623 AGGTCCTCACATGAACCAAC 57.431 50.000 0.00 0.00 34.09 3.77
303 404 1.194547 CTTGACATAAACAGTGCGCGT 59.805 47.619 8.43 0.00 0.00 6.01
305 406 1.069296 TGCTTGACATAAACAGTGCGC 60.069 47.619 0.00 0.00 0.00 6.09
366 467 7.634671 TGTACTCTCAAATATGGTCTCGTAA 57.365 36.000 0.00 0.00 0.00 3.18
456 558 2.738314 GCATCAGGAAAACACAAATGGC 59.262 45.455 0.00 0.00 0.00 4.40
611 724 7.075851 TGAAATGCCTCTGAGATCTCAATAT 57.924 36.000 25.09 12.41 39.39 1.28
824 942 7.973388 TCTTACAAACACACCAAAATTCTCAAG 59.027 33.333 0.00 0.00 0.00 3.02
939 1057 5.984323 CGAGTCTAGGTATTTTAGAAAGGGC 59.016 44.000 0.00 0.00 0.00 5.19
946 1064 6.011476 GGTAGCCGAGTCTAGGTATTTTAG 57.989 45.833 0.56 0.00 0.00 1.85
1161 1285 4.500116 GAGGACAGCTCGCGGACC 62.500 72.222 6.13 0.00 0.00 4.46
1618 1789 7.820044 ACTTCAAATTCGTCTCTGTAATCTC 57.180 36.000 0.00 0.00 0.00 2.75
1619 1790 8.304596 TGTACTTCAAATTCGTCTCTGTAATCT 58.695 33.333 0.00 0.00 0.00 2.40
1752 1923 4.561752 AGGAGAGCTACTAATTGGGATGT 58.438 43.478 0.00 0.00 0.00 3.06
1815 2002 3.853355 ATTCTCAGCCCTTGACTATGG 57.147 47.619 0.00 0.00 0.00 2.74
1827 2014 5.966742 AAGGGTAAGTTCAAATTCTCAGC 57.033 39.130 0.00 0.00 0.00 4.26
1888 2077 7.759489 AGCAACTTGGTGATCATTTTACTAA 57.241 32.000 0.00 0.00 0.00 2.24
1910 2099 1.583451 CAACACACGCACACACAGC 60.583 57.895 0.00 0.00 0.00 4.40
1911 2100 1.583451 GCAACACACGCACACACAG 60.583 57.895 0.00 0.00 0.00 3.66
1912 2101 1.581727 AAGCAACACACGCACACACA 61.582 50.000 0.00 0.00 0.00 3.72
1913 2102 0.455972 AAAGCAACACACGCACACAC 60.456 50.000 0.00 0.00 0.00 3.82
1914 2103 0.455802 CAAAGCAACACACGCACACA 60.456 50.000 0.00 0.00 0.00 3.72
1917 2106 1.320259 GAAACAAAGCAACACACGCAC 59.680 47.619 0.00 0.00 0.00 5.34
1918 2107 1.623359 GAAACAAAGCAACACACGCA 58.377 45.000 0.00 0.00 0.00 5.24
1919 2108 0.920664 GGAAACAAAGCAACACACGC 59.079 50.000 0.00 0.00 0.00 5.34
1921 2110 2.539476 CCTGGAAACAAAGCAACACAC 58.461 47.619 0.00 0.00 42.06 3.82
1923 2112 1.806247 GCCCTGGAAACAAAGCAACAC 60.806 52.381 0.00 0.00 42.06 3.32
1924 2113 0.463620 GCCCTGGAAACAAAGCAACA 59.536 50.000 0.00 0.00 42.06 3.33
1925 2114 0.752658 AGCCCTGGAAACAAAGCAAC 59.247 50.000 0.00 0.00 42.06 4.17
1926 2115 1.138661 CAAGCCCTGGAAACAAAGCAA 59.861 47.619 0.00 0.00 42.06 3.91
1927 2116 0.752054 CAAGCCCTGGAAACAAAGCA 59.248 50.000 0.00 0.00 42.06 3.91
1928 2117 0.752658 ACAAGCCCTGGAAACAAAGC 59.247 50.000 0.00 0.00 42.06 3.51
1929 2118 2.430332 TCAACAAGCCCTGGAAACAAAG 59.570 45.455 0.00 0.00 42.06 2.77
1930 2119 2.430332 CTCAACAAGCCCTGGAAACAAA 59.570 45.455 0.00 0.00 42.06 2.83
1931 2120 2.031120 CTCAACAAGCCCTGGAAACAA 58.969 47.619 0.00 0.00 42.06 2.83
1932 2121 1.691196 CTCAACAAGCCCTGGAAACA 58.309 50.000 0.00 0.00 39.59 2.83
1933 2122 0.315251 GCTCAACAAGCCCTGGAAAC 59.685 55.000 0.00 0.00 45.92 2.78
1934 2123 2.732289 GCTCAACAAGCCCTGGAAA 58.268 52.632 0.00 0.00 45.92 3.13
1935 2124 4.500265 GCTCAACAAGCCCTGGAA 57.500 55.556 0.00 0.00 45.92 3.53
1943 2132 1.572085 CGAGGGCACAGCTCAACAAG 61.572 60.000 0.00 0.00 0.00 3.16
1944 2133 1.597854 CGAGGGCACAGCTCAACAA 60.598 57.895 0.00 0.00 0.00 2.83
1945 2134 2.031012 CGAGGGCACAGCTCAACA 59.969 61.111 0.00 0.00 0.00 3.33
1946 2135 2.743928 CCGAGGGCACAGCTCAAC 60.744 66.667 0.00 0.00 0.00 3.18
1957 2146 2.951229 AATAGGGTTAATGCCGAGGG 57.049 50.000 0.00 0.00 0.00 4.30
1958 2147 3.146847 GGAAATAGGGTTAATGCCGAGG 58.853 50.000 0.00 0.00 0.00 4.63
1959 2148 4.086706 AGGAAATAGGGTTAATGCCGAG 57.913 45.455 0.00 0.00 0.00 4.63
1960 2149 4.202388 GGTAGGAAATAGGGTTAATGCCGA 60.202 45.833 0.00 0.00 0.00 5.54
1961 2150 4.070009 GGTAGGAAATAGGGTTAATGCCG 58.930 47.826 0.00 0.00 0.00 5.69
1962 2151 5.320488 AGGTAGGAAATAGGGTTAATGCC 57.680 43.478 0.00 0.00 0.00 4.40
1963 2152 6.127101 ACAAGGTAGGAAATAGGGTTAATGC 58.873 40.000 0.00 0.00 0.00 3.56
1964 2153 9.284968 CATACAAGGTAGGAAATAGGGTTAATG 57.715 37.037 0.00 0.00 0.00 1.90
1965 2154 9.010767 ACATACAAGGTAGGAAATAGGGTTAAT 57.989 33.333 0.00 0.00 0.00 1.40
1966 2155 8.396619 ACATACAAGGTAGGAAATAGGGTTAA 57.603 34.615 0.00 0.00 0.00 2.01
1967 2156 7.847848 AGACATACAAGGTAGGAAATAGGGTTA 59.152 37.037 0.00 0.00 0.00 2.85
1968 2157 6.677076 AGACATACAAGGTAGGAAATAGGGTT 59.323 38.462 0.00 0.00 0.00 4.11
1969 2158 6.099845 CAGACATACAAGGTAGGAAATAGGGT 59.900 42.308 0.00 0.00 0.00 4.34
1970 2159 6.099845 ACAGACATACAAGGTAGGAAATAGGG 59.900 42.308 0.00 0.00 0.00 3.53
1971 2160 6.986817 CACAGACATACAAGGTAGGAAATAGG 59.013 42.308 0.00 0.00 0.00 2.57
1972 2161 7.782049 TCACAGACATACAAGGTAGGAAATAG 58.218 38.462 0.00 0.00 0.00 1.73
1973 2162 7.618117 TCTCACAGACATACAAGGTAGGAAATA 59.382 37.037 0.00 0.00 0.00 1.40
1974 2163 6.440647 TCTCACAGACATACAAGGTAGGAAAT 59.559 38.462 0.00 0.00 0.00 2.17
1975 2164 5.778241 TCTCACAGACATACAAGGTAGGAAA 59.222 40.000 0.00 0.00 0.00 3.13
1976 2165 5.185249 GTCTCACAGACATACAAGGTAGGAA 59.815 44.000 0.00 0.00 44.45 3.36
1977 2166 4.705507 GTCTCACAGACATACAAGGTAGGA 59.294 45.833 0.00 0.00 44.45 2.94
1978 2167 5.000012 GTCTCACAGACATACAAGGTAGG 58.000 47.826 0.00 0.00 44.45 3.18
1990 2179 2.604914 CACACACACAAGTCTCACAGAC 59.395 50.000 0.00 0.00 45.38 3.51
1991 2180 2.233676 ACACACACACAAGTCTCACAGA 59.766 45.455 0.00 0.00 0.00 3.41
1992 2181 2.349580 CACACACACACAAGTCTCACAG 59.650 50.000 0.00 0.00 0.00 3.66
1993 2182 2.289382 ACACACACACACAAGTCTCACA 60.289 45.455 0.00 0.00 0.00 3.58
1994 2183 2.094258 CACACACACACACAAGTCTCAC 59.906 50.000 0.00 0.00 0.00 3.51
1995 2184 2.289382 ACACACACACACACAAGTCTCA 60.289 45.455 0.00 0.00 0.00 3.27
1996 2185 2.094258 CACACACACACACACAAGTCTC 59.906 50.000 0.00 0.00 0.00 3.36
1997 2186 2.076100 CACACACACACACACAAGTCT 58.924 47.619 0.00 0.00 0.00 3.24
1998 2187 1.804151 ACACACACACACACACAAGTC 59.196 47.619 0.00 0.00 0.00 3.01
1999 2188 1.535028 CACACACACACACACACAAGT 59.465 47.619 0.00 0.00 0.00 3.16
2000 2189 1.535028 ACACACACACACACACACAAG 59.465 47.619 0.00 0.00 0.00 3.16
2001 2190 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2002 2191 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2003 2192 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2004 2193 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
2005 2194 2.031595 TCAAACACACACACACACACAC 60.032 45.455 0.00 0.00 0.00 3.82
2006 2195 2.222027 TCAAACACACACACACACACA 58.778 42.857 0.00 0.00 0.00 3.72
2007 2196 2.977169 GTTCAAACACACACACACACAC 59.023 45.455 0.00 0.00 0.00 3.82
2008 2197 2.030717 GGTTCAAACACACACACACACA 60.031 45.455 0.00 0.00 0.00 3.72
2009 2198 2.227865 AGGTTCAAACACACACACACAC 59.772 45.455 0.00 0.00 0.00 3.82
2010 2199 2.509569 AGGTTCAAACACACACACACA 58.490 42.857 0.00 0.00 0.00 3.72
2011 2200 3.241701 CAAGGTTCAAACACACACACAC 58.758 45.455 0.00 0.00 0.00 3.82
2012 2201 2.887783 ACAAGGTTCAAACACACACACA 59.112 40.909 0.00 0.00 0.00 3.72
2013 2202 3.569250 ACAAGGTTCAAACACACACAC 57.431 42.857 0.00 0.00 0.00 3.82
2014 2203 3.305676 CCAACAAGGTTCAAACACACACA 60.306 43.478 0.00 0.00 0.00 3.72
2015 2204 3.057174 TCCAACAAGGTTCAAACACACAC 60.057 43.478 0.00 0.00 39.02 3.82
2016 2205 3.157881 TCCAACAAGGTTCAAACACACA 58.842 40.909 0.00 0.00 39.02 3.72
2017 2206 3.859411 TCCAACAAGGTTCAAACACAC 57.141 42.857 0.00 0.00 39.02 3.82
2018 2207 3.766591 ACATCCAACAAGGTTCAAACACA 59.233 39.130 0.00 0.00 39.02 3.72
2019 2208 4.385358 ACATCCAACAAGGTTCAAACAC 57.615 40.909 0.00 0.00 39.02 3.32
2020 2209 5.174395 CAAACATCCAACAAGGTTCAAACA 58.826 37.500 0.00 0.00 39.02 2.83
2021 2210 4.570369 CCAAACATCCAACAAGGTTCAAAC 59.430 41.667 0.00 0.00 39.02 2.93
2022 2211 4.764172 CCAAACATCCAACAAGGTTCAAA 58.236 39.130 0.00 0.00 39.02 2.69
2023 2212 3.431486 GCCAAACATCCAACAAGGTTCAA 60.431 43.478 0.00 0.00 39.02 2.69
2024 2213 2.102252 GCCAAACATCCAACAAGGTTCA 59.898 45.455 0.00 0.00 39.02 3.18
2025 2214 2.365293 AGCCAAACATCCAACAAGGTTC 59.635 45.455 0.00 0.00 39.02 3.62
2026 2215 2.365293 GAGCCAAACATCCAACAAGGTT 59.635 45.455 0.00 0.00 39.02 3.50
2027 2216 1.963515 GAGCCAAACATCCAACAAGGT 59.036 47.619 0.00 0.00 39.02 3.50
2028 2217 1.068333 CGAGCCAAACATCCAACAAGG 60.068 52.381 0.00 0.00 39.47 3.61
2029 2218 1.068333 CCGAGCCAAACATCCAACAAG 60.068 52.381 0.00 0.00 0.00 3.16
2030 2219 0.958091 CCGAGCCAAACATCCAACAA 59.042 50.000 0.00 0.00 0.00 2.83
2031 2220 0.893270 CCCGAGCCAAACATCCAACA 60.893 55.000 0.00 0.00 0.00 3.33
2032 2221 1.883021 CCCGAGCCAAACATCCAAC 59.117 57.895 0.00 0.00 0.00 3.77
2033 2222 1.976474 GCCCGAGCCAAACATCCAA 60.976 57.895 0.00 0.00 0.00 3.53
2034 2223 2.361104 GCCCGAGCCAAACATCCA 60.361 61.111 0.00 0.00 0.00 3.41
2035 2224 3.508840 CGCCCGAGCCAAACATCC 61.509 66.667 0.00 0.00 34.57 3.51
2036 2225 3.508840 CCGCCCGAGCCAAACATC 61.509 66.667 0.00 0.00 34.57 3.06
2037 2226 3.860930 AACCGCCCGAGCCAAACAT 62.861 57.895 0.00 0.00 34.57 2.71
2038 2227 4.572571 AACCGCCCGAGCCAAACA 62.573 61.111 0.00 0.00 34.57 2.83
2039 2228 3.292159 AAACCGCCCGAGCCAAAC 61.292 61.111 0.00 0.00 34.57 2.93
2040 2229 3.291383 CAAACCGCCCGAGCCAAA 61.291 61.111 0.00 0.00 34.57 3.28
2044 2233 1.654023 ATAAAGCAAACCGCCCGAGC 61.654 55.000 0.00 0.00 44.04 5.03
2045 2234 1.658994 TATAAAGCAAACCGCCCGAG 58.341 50.000 0.00 0.00 44.04 4.63
2046 2235 2.110901 TTATAAAGCAAACCGCCCGA 57.889 45.000 0.00 0.00 44.04 5.14
2047 2236 4.759516 ATATTATAAAGCAAACCGCCCG 57.240 40.909 0.00 0.00 44.04 6.13
2058 2247 6.730960 TTCGCCCCGCTTTATATTATAAAG 57.269 37.500 23.28 23.28 37.53 1.85
2059 2248 6.348704 GCTTTCGCCCCGCTTTATATTATAAA 60.349 38.462 8.26 8.26 0.00 1.40
2060 2249 5.122711 GCTTTCGCCCCGCTTTATATTATAA 59.877 40.000 0.00 0.00 0.00 0.98
2061 2250 4.632688 GCTTTCGCCCCGCTTTATATTATA 59.367 41.667 0.00 0.00 0.00 0.98
2062 2251 3.439129 GCTTTCGCCCCGCTTTATATTAT 59.561 43.478 0.00 0.00 0.00 1.28
2063 2252 2.809696 GCTTTCGCCCCGCTTTATATTA 59.190 45.455 0.00 0.00 0.00 0.98
2064 2253 1.607148 GCTTTCGCCCCGCTTTATATT 59.393 47.619 0.00 0.00 0.00 1.28
2065 2254 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
2066 2255 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
2067 2256 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
2077 2266 2.287129 TGTTACCGAAAAAGGCTTTCGC 60.287 45.455 13.76 7.41 46.89 4.70
2079 2268 4.320275 CCTCTGTTACCGAAAAAGGCTTTC 60.320 45.833 13.76 0.41 33.69 2.62
2080 2269 3.568430 CCTCTGTTACCGAAAAAGGCTTT 59.432 43.478 6.68 6.68 33.69 3.51
2081 2270 3.146847 CCTCTGTTACCGAAAAAGGCTT 58.853 45.455 0.00 0.00 33.69 4.35
2082 2271 2.105993 ACCTCTGTTACCGAAAAAGGCT 59.894 45.455 0.00 0.00 33.69 4.58
2083 2272 2.225727 CACCTCTGTTACCGAAAAAGGC 59.774 50.000 0.00 0.00 33.69 4.35
2084 2273 2.812011 CCACCTCTGTTACCGAAAAAGG 59.188 50.000 0.00 0.00 37.30 3.11
2085 2274 3.735591 TCCACCTCTGTTACCGAAAAAG 58.264 45.455 0.00 0.00 0.00 2.27
2086 2275 3.842007 TCCACCTCTGTTACCGAAAAA 57.158 42.857 0.00 0.00 0.00 1.94
2087 2276 3.735591 CTTCCACCTCTGTTACCGAAAA 58.264 45.455 0.00 0.00 0.00 2.29
2088 2277 2.549349 GCTTCCACCTCTGTTACCGAAA 60.549 50.000 0.00 0.00 0.00 3.46
2089 2278 1.001633 GCTTCCACCTCTGTTACCGAA 59.998 52.381 0.00 0.00 0.00 4.30
2090 2279 0.606604 GCTTCCACCTCTGTTACCGA 59.393 55.000 0.00 0.00 0.00 4.69
2091 2280 0.320374 TGCTTCCACCTCTGTTACCG 59.680 55.000 0.00 0.00 0.00 4.02
2092 2281 2.561478 TTGCTTCCACCTCTGTTACC 57.439 50.000 0.00 0.00 0.00 2.85
2093 2282 3.191371 CCATTTGCTTCCACCTCTGTTAC 59.809 47.826 0.00 0.00 0.00 2.50
2094 2283 3.073798 TCCATTTGCTTCCACCTCTGTTA 59.926 43.478 0.00 0.00 0.00 2.41
2099 2288 5.047377 TGTTATTTCCATTTGCTTCCACCTC 60.047 40.000 0.00 0.00 0.00 3.85
2232 2430 1.981495 ACTATTGGGGAGGAGCATAGC 59.019 52.381 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.