Multiple sequence alignment - TraesCS1D01G245300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G245300 chr1D 100.000 4674 0 0 1 4674 336363099 336367772 0.000000e+00 8632.0
1 TraesCS1D01G245300 chr1D 100.000 2284 0 0 5156 7439 336368254 336370537 0.000000e+00 4218.0
2 TraesCS1D01G245300 chr1D 88.764 178 17 3 7264 7439 485207438 485207614 1.630000e-51 215.0
3 TraesCS1D01G245300 chr1D 80.153 131 21 4 271 398 361198454 361198582 7.950000e-15 93.5
4 TraesCS1D01G245300 chr1B 93.674 3367 134 40 618 3947 452283285 452286609 0.000000e+00 4964.0
5 TraesCS1D01G245300 chr1B 97.270 1392 35 1 5333 6721 452287953 452289344 0.000000e+00 2357.0
6 TraesCS1D01G245300 chr1B 91.573 712 31 12 3977 4673 452286607 452287304 0.000000e+00 955.0
7 TraesCS1D01G245300 chr1B 91.241 411 24 8 6776 7186 452289412 452289810 3.920000e-152 549.0
8 TraesCS1D01G245300 chr1B 92.818 181 12 1 5156 5336 452287402 452287581 2.060000e-65 261.0
9 TraesCS1D01G245300 chr1B 96.296 81 3 0 2804 2884 452285541 452285461 4.680000e-27 134.0
10 TraesCS1D01G245300 chr1B 94.595 37 2 0 6739 6775 452289346 452289382 2.900000e-04 58.4
11 TraesCS1D01G245300 chr1A 91.914 2597 123 34 1 2547 434870737 434873296 0.000000e+00 3552.0
12 TraesCS1D01G245300 chr1A 92.423 1861 90 27 5333 7172 434876635 434878465 0.000000e+00 2608.0
13 TraesCS1D01G245300 chr1A 92.462 849 46 8 2883 3715 434873347 434874193 0.000000e+00 1197.0
14 TraesCS1D01G245300 chr1A 93.564 404 20 6 3794 4195 434874190 434874589 1.380000e-166 597.0
15 TraesCS1D01G245300 chr1A 88.605 430 20 12 4193 4597 434875223 434875648 5.180000e-136 496.0
16 TraesCS1D01G245300 chr1A 94.268 157 8 1 5180 5336 434876087 434876242 9.650000e-59 239.0
17 TraesCS1D01G245300 chr1A 97.059 34 1 0 3765 3798 459440844 459440877 2.900000e-04 58.4
18 TraesCS1D01G245300 chr7B 89.796 490 33 5 4199 4673 148678209 148677722 4.930000e-171 612.0
19 TraesCS1D01G245300 chr7B 93.478 46 2 1 3759 3804 732481423 732481379 4.820000e-07 67.6
20 TraesCS1D01G245300 chr5D 90.761 184 12 4 7259 7439 553466504 553466323 2.680000e-59 241.0
21 TraesCS1D01G245300 chr5D 89.444 180 17 2 7262 7439 30973646 30973825 7.510000e-55 226.0
22 TraesCS1D01G245300 chr6A 90.608 181 13 3 7261 7439 615461984 615461806 3.470000e-58 237.0
23 TraesCS1D01G245300 chr7A 90.395 177 15 2 7265 7439 674407063 674406887 1.610000e-56 231.0
24 TraesCS1D01G245300 chr7A 89.831 177 16 2 7265 7439 674358482 674358306 7.510000e-55 226.0
25 TraesCS1D01G245300 chr7D 89.444 180 17 2 7262 7439 99616719 99616540 7.510000e-55 226.0
26 TraesCS1D01G245300 chr7D 80.488 123 22 2 281 401 93094174 93094052 7.950000e-15 93.5
27 TraesCS1D01G245300 chr3D 88.889 180 15 5 7263 7439 91034815 91034992 4.520000e-52 217.0
28 TraesCS1D01G245300 chr3D 77.297 370 58 13 1952 2320 119130153 119130497 2.120000e-45 195.0
29 TraesCS1D01G245300 chr3D 82.707 133 22 1 270 401 411006229 411006361 4.720000e-22 117.0
30 TraesCS1D01G245300 chr3D 91.358 81 7 0 2804 2884 108916342 108916262 2.190000e-20 111.0
31 TraesCS1D01G245300 chr3D 81.955 133 23 1 270 401 574859858 574859726 2.190000e-20 111.0
32 TraesCS1D01G245300 chr3D 91.139 79 7 0 2806 2884 108916268 108916346 2.840000e-19 108.0
33 TraesCS1D01G245300 chr3D 79.433 141 27 2 263 401 607879337 607879477 1.710000e-16 99.0
34 TraesCS1D01G245300 chr3D 76.608 171 31 6 1596 1763 119129964 119130128 1.330000e-12 86.1
35 TraesCS1D01G245300 chr6B 88.764 178 13 5 7264 7438 352410232 352410405 2.100000e-50 211.0
36 TraesCS1D01G245300 chr2D 92.941 85 5 1 3714 3797 299891103 299891019 1.010000e-23 122.0
37 TraesCS1D01G245300 chr2A 92.683 82 6 0 2804 2885 569278888 569278807 1.310000e-22 119.0
38 TraesCS1D01G245300 chr2A 92.593 81 6 0 2804 2884 569278812 569278892 4.720000e-22 117.0
39 TraesCS1D01G245300 chr2A 94.595 74 4 0 2811 2884 38346724 38346651 1.700000e-21 115.0
40 TraesCS1D01G245300 chr2A 91.139 79 7 0 2806 2884 30572367 30572289 2.840000e-19 108.0
41 TraesCS1D01G245300 chr4A 90.110 91 8 1 2795 2884 488530735 488530645 4.720000e-22 117.0
42 TraesCS1D01G245300 chr4A 93.750 48 2 1 3750 3797 16498515 16498469 3.720000e-08 71.3
43 TraesCS1D01G245300 chr2B 82.946 129 20 2 270 397 15622140 15622013 1.700000e-21 115.0
44 TraesCS1D01G245300 chr2B 79.412 136 22 5 270 401 788519183 788519050 2.860000e-14 91.6
45 TraesCS1D01G245300 chr3B 89.412 85 8 1 3714 3797 671866544 671866628 1.020000e-18 106.0
46 TraesCS1D01G245300 chr3B 85.882 85 10 2 3714 3797 603571701 603571784 1.030000e-13 89.8
47 TraesCS1D01G245300 chr4D 78.832 137 26 3 266 401 254218408 254218274 1.030000e-13 89.8
48 TraesCS1D01G245300 chr3A 82.759 87 9 4 3714 3797 599793020 599793103 1.040000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G245300 chr1D 336363099 336370537 7438 False 6425.000000 8632 100.0000 1 7439 2 chr1D.!!$F3 7438
1 TraesCS1D01G245300 chr1B 452283285 452289810 6525 False 1524.066667 4964 93.5285 618 7186 6 chr1B.!!$F1 6568
2 TraesCS1D01G245300 chr1A 434870737 434878465 7728 False 1448.166667 3552 92.2060 1 7172 6 chr1A.!!$F2 7171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.107508 CTTCACGGCCAGGTCATGAT 60.108 55.000 2.24 0.0 0.00 2.45 F
666 673 0.109913 GGTCCGAAACAAGGAACCCT 59.890 55.000 0.00 0.0 39.52 4.34 F
1589 1639 0.790993 TGGATAGTAGGGCTAGGGGG 59.209 60.000 0.00 0.0 32.45 5.40 F
3256 3340 1.878953 CGCCAGAGTTACTGTTTGGT 58.121 50.000 0.00 0.0 44.40 3.67 F
3587 3671 1.067295 AATTGGTCTGCTCCTGTGGA 58.933 50.000 0.00 0.0 0.00 4.02 F
5483 6734 1.618343 GCATGTTTAAGGGTGTGCCTT 59.382 47.619 0.00 0.0 34.45 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1095 1131 0.327924 TGGTGTCGATGGCCTTGAAT 59.672 50.000 3.32 0.0 0.0 2.57 R
1688 1738 1.376543 AACCTGAGCAAGCATCATCG 58.623 50.000 0.00 0.0 0.0 3.84 R
3520 3604 0.941542 CCGGTCGAGCTTTCAAAACA 59.058 50.000 13.48 0.0 0.0 2.83 R
4564 5319 1.751351 CTAGCCACACAGATTCCTCGA 59.249 52.381 0.00 0.0 0.0 4.04 R
5550 6801 0.111253 ACTTGGAGTGCCCCTGAAAG 59.889 55.000 0.00 0.0 0.0 2.62 R
7373 8661 0.103390 TCTCCGAAACTTGACGTGCA 59.897 50.000 0.00 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.095847 GCGTCCGCACCGATAACAA 61.096 57.895 6.82 0.00 41.49 2.83
83 84 1.127951 GCACCGATAACAACTTCACGG 59.872 52.381 0.00 0.00 44.77 4.94
95 96 0.107508 CTTCACGGCCAGGTCATGAT 60.108 55.000 2.24 0.00 0.00 2.45
121 122 0.317479 GTTATGGGAGCGGCGATAGT 59.683 55.000 12.98 0.00 39.35 2.12
122 123 0.317160 TTATGGGAGCGGCGATAGTG 59.683 55.000 12.98 0.00 39.35 2.74
133 134 0.179207 GCGATAGTGACGTGTCGACA 60.179 55.000 15.76 15.76 36.25 4.35
134 135 1.726892 GCGATAGTGACGTGTCGACAA 60.727 52.381 21.95 2.53 36.25 3.18
137 138 2.675767 TAGTGACGTGTCGACAACTC 57.324 50.000 21.95 17.24 33.29 3.01
143 144 0.770590 CGTGTCGACAACTCGTTCTG 59.229 55.000 21.95 0.00 41.02 3.02
147 148 2.372690 CGACAACTCGTTCTGGCGG 61.373 63.158 1.51 0.00 40.47 6.13
163 164 1.301087 CGGTGGCAGTGGTCGTTAA 60.301 57.895 0.00 0.00 0.00 2.01
174 175 4.570772 CAGTGGTCGTTAAATGGTCCATAG 59.429 45.833 4.33 0.00 0.00 2.23
176 177 5.130477 AGTGGTCGTTAAATGGTCCATAGAT 59.870 40.000 4.33 0.00 0.00 1.98
179 180 5.927115 GGTCGTTAAATGGTCCATAGATCTC 59.073 44.000 4.33 0.00 0.00 2.75
184 185 5.815233 AAATGGTCCATAGATCTCGATGT 57.185 39.130 4.33 0.00 0.00 3.06
185 186 6.918067 AAATGGTCCATAGATCTCGATGTA 57.082 37.500 4.33 0.00 0.00 2.29
257 258 9.715121 TTATAATAGATCCGTGGTATTGGAAAC 57.285 33.333 0.00 0.00 37.90 2.78
296 297 8.648557 TTAACACAATACAGATGTAGATGCTC 57.351 34.615 0.00 0.00 33.52 4.26
315 316 4.202111 TGCTCATACATACGCACATACACT 60.202 41.667 0.00 0.00 0.00 3.55
320 321 3.717707 ACATACGCACATACACTCATCC 58.282 45.455 0.00 0.00 0.00 3.51
329 330 5.405571 GCACATACACTCATCCCTATAAACG 59.594 44.000 0.00 0.00 0.00 3.60
332 333 4.689612 ACACTCATCCCTATAAACGCAT 57.310 40.909 0.00 0.00 0.00 4.73
344 345 7.601130 TCCCTATAAACGCATATACACACATTC 59.399 37.037 0.00 0.00 0.00 2.67
353 354 7.012989 ACGCATATACACACATTCTACTCTACA 59.987 37.037 0.00 0.00 0.00 2.74
359 360 6.102663 ACACACATTCTACTCTACAAGCATC 58.897 40.000 0.00 0.00 0.00 3.91
361 362 6.815641 CACACATTCTACTCTACAAGCATCTT 59.184 38.462 0.00 0.00 0.00 2.40
363 364 8.531982 ACACATTCTACTCTACAAGCATCTTAA 58.468 33.333 0.00 0.00 0.00 1.85
375 376 6.402222 ACAAGCATCTTAAAGAGATCGAGTT 58.598 36.000 0.00 0.00 43.32 3.01
398 399 3.002042 GGCACATCATCTTGAGATTGACG 59.998 47.826 0.90 0.00 31.21 4.35
399 400 3.867493 GCACATCATCTTGAGATTGACGA 59.133 43.478 0.00 0.00 31.21 4.20
407 408 1.710013 TGAGATTGACGAACGCCTTC 58.290 50.000 0.00 0.00 0.00 3.46
430 431 1.064537 AGTACGTTTGGTGGGTTGGTT 60.065 47.619 0.00 0.00 0.00 3.67
432 433 1.227118 CGTTTGGTGGGTTGGTTGC 60.227 57.895 0.00 0.00 0.00 4.17
442 443 1.733526 GTTGGTTGCCACACTCACC 59.266 57.895 0.00 0.00 30.78 4.02
453 454 1.226974 CACTCACCCCTATGACGCG 60.227 63.158 3.53 3.53 0.00 6.01
469 470 4.005472 CGCATCGCCGGAATGCTC 62.005 66.667 28.71 10.95 39.02 4.26
470 471 2.590007 GCATCGCCGGAATGCTCT 60.590 61.111 26.32 0.00 38.22 4.09
478 479 4.385825 TCGCCGGAATGCTCTAATAAATT 58.614 39.130 5.05 0.00 0.00 1.82
499 500 8.552083 AAATTCAGAAAAATAGAACCAATGCC 57.448 30.769 0.00 0.00 0.00 4.40
501 502 6.662865 TCAGAAAAATAGAACCAATGCCAA 57.337 33.333 0.00 0.00 0.00 4.52
505 509 8.253113 CAGAAAAATAGAACCAATGCCAAGTAT 58.747 33.333 0.00 0.00 0.00 2.12
527 531 2.711009 AGGACTTGAAATCTGGTGACCA 59.289 45.455 3.40 3.40 0.00 4.02
531 535 4.082125 ACTTGAAATCTGGTGACCATTCC 58.918 43.478 4.03 0.00 30.82 3.01
561 565 6.017852 AGGATCAGTTCGTGAAAGAAAAACTC 60.018 38.462 0.00 0.00 39.19 3.01
601 606 6.262273 GTGAAAGAAAAACTGATACACCCTCA 59.738 38.462 0.00 0.00 0.00 3.86
659 666 3.551551 GATTCAAACGGTCCGAAACAAG 58.448 45.455 20.51 1.53 0.00 3.16
660 667 1.301423 TCAAACGGTCCGAAACAAGG 58.699 50.000 20.51 0.01 0.00 3.61
666 673 0.109913 GGTCCGAAACAAGGAACCCT 59.890 55.000 0.00 0.00 39.52 4.34
668 675 1.133363 TCCGAAACAAGGAACCCTCA 58.867 50.000 0.00 0.00 34.33 3.86
670 677 0.875059 CGAAACAAGGAACCCTCAGC 59.125 55.000 0.00 0.00 30.89 4.26
672 679 1.882623 GAAACAAGGAACCCTCAGCAG 59.117 52.381 0.00 0.00 30.89 4.24
674 681 2.037136 CAAGGAACCCTCAGCAGCG 61.037 63.158 0.00 0.00 30.89 5.18
699 722 1.001764 CTGGCCCAGCTCACAATCA 60.002 57.895 0.00 0.00 0.00 2.57
702 725 1.598701 GGCCCAGCTCACAATCAACC 61.599 60.000 0.00 0.00 0.00 3.77
780 804 1.880646 CGGAATCCGGAACAAACACCT 60.881 52.381 14.91 0.00 44.15 4.00
781 805 2.613474 CGGAATCCGGAACAAACACCTA 60.613 50.000 14.91 0.00 44.15 3.08
1240 1282 1.737008 GGTCCGTCCGTCTGCTTTC 60.737 63.158 0.00 0.00 0.00 2.62
1304 1347 4.742201 TTGGTCGCGGCAGCTCTC 62.742 66.667 14.93 0.00 42.32 3.20
1365 1408 1.271379 GGCTAGGGTTGTTTCTCAGCA 60.271 52.381 0.00 0.00 0.00 4.41
1589 1639 0.790993 TGGATAGTAGGGCTAGGGGG 59.209 60.000 0.00 0.00 32.45 5.40
1649 1699 7.119846 CAGTATTCCCAAGTTAACTCTTTCAGG 59.880 40.741 8.95 4.17 0.00 3.86
1661 1711 5.930837 ACTCTTTCAGGTCTCTAGGATTG 57.069 43.478 0.00 0.00 0.00 2.67
1678 1728 5.885465 AGGATTGAATCTTGACAGGTTTCT 58.115 37.500 5.03 0.00 0.00 2.52
1688 1738 4.900635 TGACAGGTTTCTTTCTGCTTTC 57.099 40.909 0.00 0.00 34.57 2.62
1711 1761 2.156917 TGATGCTTGCTCAGGTTTCAG 58.843 47.619 0.00 0.00 0.00 3.02
1725 1775 6.533730 TCAGGTTTCAGTTGTGATACTTCAT 58.466 36.000 0.00 0.00 35.57 2.57
1795 1845 2.501723 GGGGAGACAGTTGCTATCAAGA 59.498 50.000 0.00 0.00 31.93 3.02
1804 1854 3.133721 AGTTGCTATCAAGAGAATCCGCT 59.866 43.478 0.00 0.00 33.66 5.52
1998 2048 6.252599 AGGAACATTGTATTATCTCCAGCA 57.747 37.500 5.89 0.00 0.00 4.41
2265 2316 8.258007 CACTCACCAGGTTCTTGTTAATAGATA 58.742 37.037 0.00 0.00 0.00 1.98
2548 2617 8.603898 TTGGAGGTAGATAGATTTGTCTGTAA 57.396 34.615 0.00 0.00 0.00 2.41
2568 2637 7.338703 TCTGTAAATTATATCTCCTCGCGGTAT 59.661 37.037 6.13 0.00 0.00 2.73
2573 2642 6.525578 TTATATCTCCTCGCGGTATCAATT 57.474 37.500 6.13 0.00 0.00 2.32
2584 2653 3.548818 GCGGTATCAATTGCCTGCTAAAG 60.549 47.826 0.00 0.00 0.00 1.85
2677 2746 7.652727 AGAAAAGCTTTCTGGATAGAACAAAC 58.347 34.615 13.10 0.00 42.41 2.93
2679 2748 7.530426 AAAGCTTTCTGGATAGAACAAACAT 57.470 32.000 5.69 0.00 42.41 2.71
2680 2749 6.506500 AGCTTTCTGGATAGAACAAACATG 57.493 37.500 0.00 0.00 42.41 3.21
2681 2750 6.006449 AGCTTTCTGGATAGAACAAACATGT 58.994 36.000 0.00 0.00 42.41 3.21
2682 2751 7.168219 AGCTTTCTGGATAGAACAAACATGTA 58.832 34.615 0.00 0.00 42.41 2.29
2683 2752 7.119846 AGCTTTCTGGATAGAACAAACATGTAC 59.880 37.037 0.00 0.00 42.41 2.90
2684 2753 7.094805 GCTTTCTGGATAGAACAAACATGTACA 60.095 37.037 0.00 0.00 42.41 2.90
2685 2754 8.862325 TTTCTGGATAGAACAAACATGTACAT 57.138 30.769 1.41 1.41 42.41 2.29
2686 2755 8.862325 TTCTGGATAGAACAAACATGTACATT 57.138 30.769 5.37 0.00 37.99 2.71
2687 2756 9.952030 TTCTGGATAGAACAAACATGTACATTA 57.048 29.630 5.37 0.00 37.99 1.90
2804 2873 6.826741 TGTAATTATGAAAAGTGCTACTCCCC 59.173 38.462 0.00 0.00 0.00 4.81
2805 2874 2.808906 ATGAAAAGTGCTACTCCCCC 57.191 50.000 0.00 0.00 0.00 5.40
2808 2877 1.909986 GAAAAGTGCTACTCCCCCTCT 59.090 52.381 0.00 0.00 0.00 3.69
2835 2904 7.548196 TCCTAAATATAAGACGTTTTGGCAG 57.452 36.000 0.83 0.00 30.97 4.85
2836 2905 7.107542 TCCTAAATATAAGACGTTTTGGCAGT 58.892 34.615 0.83 0.00 30.97 4.40
2841 2910 3.859411 AAGACGTTTTGGCAGTTCAAA 57.141 38.095 0.00 0.00 35.15 2.69
2845 2914 3.855858 ACGTTTTGGCAGTTCAAATTGT 58.144 36.364 0.00 0.00 36.63 2.71
2846 2915 3.616379 ACGTTTTGGCAGTTCAAATTGTG 59.384 39.130 0.00 0.00 36.63 3.33
2847 2916 3.616379 CGTTTTGGCAGTTCAAATTGTGT 59.384 39.130 0.00 0.00 36.63 3.72
2889 2958 3.951663 AGGAACGGAGGGAGTAAAAATG 58.048 45.455 0.00 0.00 0.00 2.32
2894 2963 4.918588 ACGGAGGGAGTAAAAATGTTGAT 58.081 39.130 0.00 0.00 0.00 2.57
2923 2992 4.715713 AGGGTACTTCTTTCAAACTCACC 58.284 43.478 0.00 0.00 0.00 4.02
3223 3307 2.811431 TCACCACATTTAGGTCTTTGCG 59.189 45.455 0.00 0.00 37.23 4.85
3256 3340 1.878953 CGCCAGAGTTACTGTTTGGT 58.121 50.000 0.00 0.00 44.40 3.67
3375 3459 6.314896 CCTCTCAGTTTTCTCAATATGGTCAC 59.685 42.308 0.00 0.00 0.00 3.67
3520 3604 9.651913 AGTTTTTATGTCACAACTCAAAACATT 57.348 25.926 14.70 0.04 34.79 2.71
3587 3671 1.067295 AATTGGTCTGCTCCTGTGGA 58.933 50.000 0.00 0.00 0.00 4.02
3609 3693 3.947834 AGTTCTTGTGTTGTCCCAGAAAG 59.052 43.478 0.00 0.00 0.00 2.62
3614 3698 4.067972 TGTGTTGTCCCAGAAAGTAGAC 57.932 45.455 0.00 0.00 0.00 2.59
3675 3759 9.121517 CTGCTTTCATGTGTGACTTAATTTAAG 57.878 33.333 13.44 13.44 41.51 1.85
3742 3829 7.762615 TCCCTCTGTAACATTTTATAAGACGTG 59.237 37.037 0.00 0.00 0.00 4.49
3778 3865 5.123344 GGCAGTGTCCAAAAACGTCTTATAT 59.877 40.000 0.00 0.00 0.00 0.86
3944 4031 9.683069 AACAAAATACAGCAGTGATAAAGAAAG 57.317 29.630 0.00 0.00 0.00 2.62
3945 4032 8.299570 ACAAAATACAGCAGTGATAAAGAAAGG 58.700 33.333 0.00 0.00 0.00 3.11
3997 4084 6.548441 TTGGTATACCTGTTTTCTTGTTCG 57.452 37.500 22.41 0.00 36.82 3.95
4122 4210 5.962031 AGAGATATGGTTGTGGTTGGTACTA 59.038 40.000 0.00 0.00 0.00 1.82
4147 4235 6.481643 AGGCTGCTTTACCAGATTTAGTTAA 58.518 36.000 0.00 0.00 34.77 2.01
4205 4929 6.887626 TTGGCGAAATCTAAACCTAAAAGT 57.112 33.333 0.00 0.00 0.00 2.66
4325 5059 3.951340 TCCTCCTCCCCATCTGATATT 57.049 47.619 0.00 0.00 0.00 1.28
4362 5096 5.880054 ATTTGGTTATGTGCACTCTGTAC 57.120 39.130 19.41 8.73 33.42 2.90
4395 5130 5.895636 TGTTTTGGGTGAACATATAGCTG 57.104 39.130 0.00 0.00 32.44 4.24
4400 5142 4.290093 TGGGTGAACATATAGCTGAGAGT 58.710 43.478 0.00 0.00 0.00 3.24
4423 5165 5.571791 AGGGTGCCTACTTGTTTTAACTA 57.428 39.130 0.00 0.00 28.47 2.24
4556 5311 3.764434 TCTGTGGACTTGATCTGAGGTAC 59.236 47.826 0.00 0.00 0.00 3.34
4564 5319 9.159254 TGGACTTGATCTGAGGTACAAATATAT 57.841 33.333 0.00 0.00 0.00 0.86
4566 5321 9.347934 GACTTGATCTGAGGTACAAATATATCG 57.652 37.037 0.00 0.00 0.00 2.92
4610 5365 5.759506 ACATGAACGTTTAATGTTGGTGA 57.240 34.783 19.27 0.00 30.41 4.02
4613 5368 6.861055 ACATGAACGTTTAATGTTGGTGAATC 59.139 34.615 19.27 0.00 30.41 2.52
4616 5371 5.025986 ACGTTTAATGTTGGTGAATCGAC 57.974 39.130 0.00 0.00 0.00 4.20
4632 5387 7.226720 GGTGAATCGACCATAACTATGTTTCAT 59.773 37.037 0.00 0.00 35.88 2.57
4634 5389 8.826710 TGAATCGACCATAACTATGTTTCATTC 58.173 33.333 0.00 0.00 31.82 2.67
5195 5989 4.638421 TGGTAGCGGAAGGTGAAAAATATG 59.362 41.667 0.00 0.00 44.53 1.78
5208 6002 1.663695 AAATATGAGAACCGGTGCCG 58.336 50.000 8.52 3.25 39.44 5.69
5299 6093 7.229308 ACCACATATGATGATTACTCATGCTT 58.771 34.615 10.38 0.00 42.27 3.91
5346 6594 8.310382 GTCTATACTCATCATTTAGGACAGCAT 58.690 37.037 0.00 0.00 0.00 3.79
5442 6693 2.158460 GGATTAATCCTTGGGGAGGGTG 60.158 54.545 24.74 0.00 45.86 4.61
5483 6734 1.618343 GCATGTTTAAGGGTGTGCCTT 59.382 47.619 0.00 0.00 34.45 4.35
5484 6735 2.610232 GCATGTTTAAGGGTGTGCCTTG 60.610 50.000 0.00 0.00 34.45 3.61
5550 6801 1.994779 CCATTTTGGCATTTGACGAGC 59.005 47.619 0.00 0.00 0.00 5.03
5746 6998 1.327303 TGTTTCCAATGGCCAGTGAC 58.673 50.000 33.72 23.31 0.00 3.67
5841 7099 3.701205 ACACAGGTATGCTGATGTGAA 57.299 42.857 16.50 0.00 44.56 3.18
5842 7100 4.226427 ACACAGGTATGCTGATGTGAAT 57.774 40.909 16.50 0.00 44.56 2.57
5843 7101 3.943381 ACACAGGTATGCTGATGTGAATG 59.057 43.478 16.50 0.00 44.56 2.67
5844 7102 3.943381 CACAGGTATGCTGATGTGAATGT 59.057 43.478 8.01 0.00 44.56 2.71
5845 7103 3.943381 ACAGGTATGCTGATGTGAATGTG 59.057 43.478 0.00 0.00 0.00 3.21
5846 7104 4.193865 CAGGTATGCTGATGTGAATGTGA 58.806 43.478 0.00 0.00 0.00 3.58
5861 7119 0.528901 TGTGACCGACCAGAAACACG 60.529 55.000 0.00 0.00 0.00 4.49
6047 7305 4.612412 GTCGTTGTGTCCCCGCCA 62.612 66.667 0.00 0.00 0.00 5.69
6257 7515 8.537016 ACATTGAATAGGTAAACAGCACTAGTA 58.463 33.333 0.00 0.00 0.00 1.82
6348 7606 7.984422 TTATTCAGCTCTCTTCATGTGAAAA 57.016 32.000 0.00 0.00 33.07 2.29
6461 7719 3.568538 AGAAGTTTGCGTGCATCATTTC 58.431 40.909 0.00 0.00 0.00 2.17
6561 7819 1.004440 AGCTTCACTGAAGGTCGCC 60.004 57.895 16.24 2.15 45.53 5.54
6644 7902 0.652592 CGCTGATTTACGCCAAGAGG 59.347 55.000 0.00 0.00 38.23 3.69
6725 7983 3.929094 GTAACCTTCATTGGGTACGTGA 58.071 45.455 0.00 0.00 40.03 4.35
6726 7984 2.762535 ACCTTCATTGGGTACGTGAG 57.237 50.000 0.00 0.00 35.00 3.51
6728 7986 2.370849 ACCTTCATTGGGTACGTGAGTT 59.629 45.455 0.00 0.00 46.40 3.01
6729 7987 3.181448 ACCTTCATTGGGTACGTGAGTTT 60.181 43.478 0.00 0.00 46.40 2.66
6730 7988 3.188460 CCTTCATTGGGTACGTGAGTTTG 59.812 47.826 0.00 0.00 46.40 2.93
6731 7989 2.147958 TCATTGGGTACGTGAGTTTGC 58.852 47.619 0.00 0.00 46.40 3.68
6732 7990 2.151202 CATTGGGTACGTGAGTTTGCT 58.849 47.619 0.00 0.00 46.40 3.91
6733 7991 1.873698 TTGGGTACGTGAGTTTGCTC 58.126 50.000 0.00 0.00 46.40 4.26
6734 7992 0.034337 TGGGTACGTGAGTTTGCTCC 59.966 55.000 0.00 0.00 46.40 4.70
6735 7993 1.012486 GGGTACGTGAGTTTGCTCCG 61.012 60.000 0.00 0.00 46.40 4.63
6736 7994 1.012486 GGTACGTGAGTTTGCTCCGG 61.012 60.000 0.00 0.00 46.40 5.14
6737 7995 1.373748 TACGTGAGTTTGCTCCGGC 60.374 57.895 0.00 0.00 46.40 6.13
6745 8003 3.894547 TTTGCTCCGGCGAGAACCC 62.895 63.158 9.30 0.00 42.25 4.11
6930 8217 1.475403 TGGCGGACACAAAGGAAAAA 58.525 45.000 0.00 0.00 0.00 1.94
7105 8393 9.502091 TGTTTCTAACTTTCTACTGTATTGCAT 57.498 29.630 0.00 0.00 0.00 3.96
7120 8408 9.243105 ACTGTATTGCATGTAAAAGTTAAGGAT 57.757 29.630 0.00 0.00 0.00 3.24
7173 8461 4.573607 ACTTTTCGACCTTCAAGTTACCAC 59.426 41.667 0.00 0.00 0.00 4.16
7195 8483 7.885297 CCACTTGGTTTAAGAATCAATTCTCA 58.115 34.615 5.75 0.00 45.83 3.27
7196 8484 8.359642 CCACTTGGTTTAAGAATCAATTCTCAA 58.640 33.333 5.75 5.10 45.83 3.02
7197 8485 9.185192 CACTTGGTTTAAGAATCAATTCTCAAC 57.815 33.333 5.75 10.90 45.83 3.18
7198 8486 9.136323 ACTTGGTTTAAGAATCAATTCTCAACT 57.864 29.630 18.22 4.71 45.83 3.16
7199 8487 9.971922 CTTGGTTTAAGAATCAATTCTCAACTT 57.028 29.630 18.22 0.00 45.83 2.66
7200 8488 9.965824 TTGGTTTAAGAATCAATTCTCAACTTC 57.034 29.630 18.22 9.81 45.83 3.01
7201 8489 9.130661 TGGTTTAAGAATCAATTCTCAACTTCA 57.869 29.630 18.22 11.31 45.83 3.02
7202 8490 9.965824 GGTTTAAGAATCAATTCTCAACTTCAA 57.034 29.630 18.22 0.00 45.83 2.69
7205 8493 9.683069 TTAAGAATCAATTCTCAACTTCAAAGC 57.317 29.630 5.75 0.00 45.83 3.51
7206 8494 6.685657 AGAATCAATTCTCAACTTCAAAGCC 58.314 36.000 0.00 0.00 43.27 4.35
7207 8495 6.492772 AGAATCAATTCTCAACTTCAAAGCCT 59.507 34.615 0.00 0.00 43.27 4.58
7208 8496 7.667219 AGAATCAATTCTCAACTTCAAAGCCTA 59.333 33.333 0.00 0.00 43.27 3.93
7209 8497 7.951347 ATCAATTCTCAACTTCAAAGCCTAT 57.049 32.000 0.00 0.00 0.00 2.57
7210 8498 7.765695 TCAATTCTCAACTTCAAAGCCTATT 57.234 32.000 0.00 0.00 0.00 1.73
7211 8499 8.862325 TCAATTCTCAACTTCAAAGCCTATTA 57.138 30.769 0.00 0.00 0.00 0.98
7212 8500 8.730680 TCAATTCTCAACTTCAAAGCCTATTAC 58.269 33.333 0.00 0.00 0.00 1.89
7213 8501 8.734386 CAATTCTCAACTTCAAAGCCTATTACT 58.266 33.333 0.00 0.00 0.00 2.24
7214 8502 7.672983 TTCTCAACTTCAAAGCCTATTACTG 57.327 36.000 0.00 0.00 0.00 2.74
7215 8503 5.643777 TCTCAACTTCAAAGCCTATTACTGC 59.356 40.000 0.00 0.00 0.00 4.40
7216 8504 5.312895 TCAACTTCAAAGCCTATTACTGCA 58.687 37.500 0.00 0.00 0.00 4.41
7217 8505 5.181245 TCAACTTCAAAGCCTATTACTGCAC 59.819 40.000 0.00 0.00 0.00 4.57
7218 8506 4.010349 ACTTCAAAGCCTATTACTGCACC 58.990 43.478 0.00 0.00 0.00 5.01
7219 8507 2.999331 TCAAAGCCTATTACTGCACCC 58.001 47.619 0.00 0.00 0.00 4.61
7220 8508 2.024414 CAAAGCCTATTACTGCACCCC 58.976 52.381 0.00 0.00 0.00 4.95
7221 8509 1.596496 AAGCCTATTACTGCACCCCT 58.404 50.000 0.00 0.00 0.00 4.79
7222 8510 2.489528 AGCCTATTACTGCACCCCTA 57.510 50.000 0.00 0.00 0.00 3.53
7223 8511 2.771688 AGCCTATTACTGCACCCCTAA 58.228 47.619 0.00 0.00 0.00 2.69
7224 8512 3.120108 AGCCTATTACTGCACCCCTAAA 58.880 45.455 0.00 0.00 0.00 1.85
7225 8513 3.118000 AGCCTATTACTGCACCCCTAAAC 60.118 47.826 0.00 0.00 0.00 2.01
7226 8514 3.118000 GCCTATTACTGCACCCCTAAACT 60.118 47.826 0.00 0.00 0.00 2.66
7227 8515 4.627984 GCCTATTACTGCACCCCTAAACTT 60.628 45.833 0.00 0.00 0.00 2.66
7228 8516 5.506708 CCTATTACTGCACCCCTAAACTTT 58.493 41.667 0.00 0.00 0.00 2.66
7229 8517 5.589050 CCTATTACTGCACCCCTAAACTTTC 59.411 44.000 0.00 0.00 0.00 2.62
7230 8518 4.440826 TTACTGCACCCCTAAACTTTCA 57.559 40.909 0.00 0.00 0.00 2.69
7231 8519 3.306472 ACTGCACCCCTAAACTTTCAA 57.694 42.857 0.00 0.00 0.00 2.69
7232 8520 3.844640 ACTGCACCCCTAAACTTTCAAT 58.155 40.909 0.00 0.00 0.00 2.57
7233 8521 4.993028 ACTGCACCCCTAAACTTTCAATA 58.007 39.130 0.00 0.00 0.00 1.90
7234 8522 4.765339 ACTGCACCCCTAAACTTTCAATAC 59.235 41.667 0.00 0.00 0.00 1.89
7235 8523 4.083565 TGCACCCCTAAACTTTCAATACC 58.916 43.478 0.00 0.00 0.00 2.73
7236 8524 3.128068 GCACCCCTAAACTTTCAATACCG 59.872 47.826 0.00 0.00 0.00 4.02
7237 8525 4.329392 CACCCCTAAACTTTCAATACCGT 58.671 43.478 0.00 0.00 0.00 4.83
7238 8526 4.763279 CACCCCTAAACTTTCAATACCGTT 59.237 41.667 0.00 0.00 0.00 4.44
7239 8527 4.763279 ACCCCTAAACTTTCAATACCGTTG 59.237 41.667 0.00 0.00 0.00 4.10
7240 8528 4.157105 CCCCTAAACTTTCAATACCGTTGG 59.843 45.833 0.00 0.00 0.00 3.77
7241 8529 4.763279 CCCTAAACTTTCAATACCGTTGGT 59.237 41.667 0.00 0.00 40.16 3.67
7242 8530 5.939296 CCCTAAACTTTCAATACCGTTGGTA 59.061 40.000 0.00 0.00 42.80 3.25
7243 8531 6.430616 CCCTAAACTTTCAATACCGTTGGTAA 59.569 38.462 0.00 0.00 41.85 2.85
7244 8532 7.300320 CCTAAACTTTCAATACCGTTGGTAAC 58.700 38.462 0.00 0.00 41.85 2.50
7245 8533 5.694231 AACTTTCAATACCGTTGGTAACC 57.306 39.130 0.00 0.00 41.85 2.85
7246 8534 4.976864 ACTTTCAATACCGTTGGTAACCT 58.023 39.130 0.00 0.00 41.85 3.50
7247 8535 4.758165 ACTTTCAATACCGTTGGTAACCTG 59.242 41.667 0.00 0.00 41.85 4.00
7248 8536 4.620589 TTCAATACCGTTGGTAACCTGA 57.379 40.909 0.00 1.54 41.85 3.86
7249 8537 4.196626 TCAATACCGTTGGTAACCTGAG 57.803 45.455 0.00 0.00 41.85 3.35
7250 8538 3.055675 TCAATACCGTTGGTAACCTGAGG 60.056 47.826 0.00 0.00 41.85 3.86
7251 8539 2.014010 TACCGTTGGTAACCTGAGGT 57.986 50.000 0.00 0.00 34.97 3.85
7253 8541 1.071228 ACCGTTGGTAACCTGAGGTTC 59.929 52.381 21.97 12.22 43.05 3.62
7254 8542 1.425412 CGTTGGTAACCTGAGGTTCG 58.575 55.000 21.97 13.89 43.05 3.95
7255 8543 1.154197 GTTGGTAACCTGAGGTTCGC 58.846 55.000 21.97 14.58 43.05 4.70
7256 8544 0.759959 TTGGTAACCTGAGGTTCGCA 59.240 50.000 21.97 0.00 43.05 5.10
7257 8545 0.759959 TGGTAACCTGAGGTTCGCAA 59.240 50.000 21.97 5.99 43.05 4.85
7258 8546 1.141254 TGGTAACCTGAGGTTCGCAAA 59.859 47.619 21.97 0.00 43.05 3.68
7259 8547 1.804748 GGTAACCTGAGGTTCGCAAAG 59.195 52.381 21.97 0.00 43.05 2.77
7260 8548 2.490991 GTAACCTGAGGTTCGCAAAGT 58.509 47.619 21.97 0.00 43.05 2.66
7261 8549 1.594331 AACCTGAGGTTCGCAAAGTC 58.406 50.000 11.91 0.00 43.05 3.01
7262 8550 0.600255 ACCTGAGGTTCGCAAAGTCG 60.600 55.000 0.00 0.00 27.29 4.18
7263 8551 1.291877 CCTGAGGTTCGCAAAGTCGG 61.292 60.000 0.00 0.00 0.00 4.79
7264 8552 0.319555 CTGAGGTTCGCAAAGTCGGA 60.320 55.000 0.00 0.00 0.00 4.55
7265 8553 0.105224 TGAGGTTCGCAAAGTCGGAA 59.895 50.000 0.00 0.00 0.00 4.30
7266 8554 1.223187 GAGGTTCGCAAAGTCGGAAA 58.777 50.000 0.00 0.00 0.00 3.13
7267 8555 1.804748 GAGGTTCGCAAAGTCGGAAAT 59.195 47.619 0.00 0.00 0.00 2.17
7268 8556 2.225727 GAGGTTCGCAAAGTCGGAAATT 59.774 45.455 0.00 0.00 0.00 1.82
7269 8557 2.225727 AGGTTCGCAAAGTCGGAAATTC 59.774 45.455 0.00 0.00 0.00 2.17
7270 8558 2.230864 GTTCGCAAAGTCGGAAATTCG 58.769 47.619 0.00 0.00 0.00 3.34
7271 8559 1.504359 TCGCAAAGTCGGAAATTCGT 58.496 45.000 0.00 0.00 0.00 3.85
7272 8560 1.868498 TCGCAAAGTCGGAAATTCGTT 59.132 42.857 0.00 0.00 0.00 3.85
7273 8561 1.969256 CGCAAAGTCGGAAATTCGTTG 59.031 47.619 0.00 0.00 0.00 4.10
7274 8562 2.315901 GCAAAGTCGGAAATTCGTTGG 58.684 47.619 0.00 0.00 0.00 3.77
7275 8563 2.287368 GCAAAGTCGGAAATTCGTTGGT 60.287 45.455 0.00 0.00 0.00 3.67
7276 8564 3.296628 CAAAGTCGGAAATTCGTTGGTG 58.703 45.455 0.00 0.00 0.00 4.17
7277 8565 0.872388 AGTCGGAAATTCGTTGGTGC 59.128 50.000 0.00 0.00 0.00 5.01
7278 8566 0.872388 GTCGGAAATTCGTTGGTGCT 59.128 50.000 0.00 0.00 0.00 4.40
7279 8567 1.136057 GTCGGAAATTCGTTGGTGCTC 60.136 52.381 0.00 0.00 0.00 4.26
7280 8568 0.168128 CGGAAATTCGTTGGTGCTCC 59.832 55.000 0.00 0.00 0.00 4.70
7281 8569 0.526211 GGAAATTCGTTGGTGCTCCC 59.474 55.000 1.59 0.00 0.00 4.30
7282 8570 0.168128 GAAATTCGTTGGTGCTCCCG 59.832 55.000 1.59 0.00 35.15 5.14
7283 8571 1.241315 AAATTCGTTGGTGCTCCCGG 61.241 55.000 1.59 0.00 35.15 5.73
7284 8572 3.622060 ATTCGTTGGTGCTCCCGGG 62.622 63.158 16.85 16.85 35.15 5.73
7286 8574 4.760047 CGTTGGTGCTCCCGGGAG 62.760 72.222 41.29 41.29 44.56 4.30
7309 8597 2.870372 GCTCCTGCGTGCGATTTT 59.130 55.556 0.00 0.00 0.00 1.82
7310 8598 1.210155 GCTCCTGCGTGCGATTTTT 59.790 52.632 0.00 0.00 0.00 1.94
7361 8649 5.895636 AAAAATTGGTGCATACATCTCGA 57.104 34.783 0.00 0.00 0.00 4.04
7362 8650 4.882671 AAATTGGTGCATACATCTCGAC 57.117 40.909 0.00 0.00 0.00 4.20
7363 8651 3.541996 ATTGGTGCATACATCTCGACA 57.458 42.857 0.00 0.00 0.00 4.35
7364 8652 3.541996 TTGGTGCATACATCTCGACAT 57.458 42.857 0.00 0.00 0.00 3.06
7365 8653 3.541996 TGGTGCATACATCTCGACATT 57.458 42.857 0.00 0.00 0.00 2.71
7366 8654 4.664150 TGGTGCATACATCTCGACATTA 57.336 40.909 0.00 0.00 0.00 1.90
7367 8655 5.213891 TGGTGCATACATCTCGACATTAT 57.786 39.130 0.00 0.00 0.00 1.28
7368 8656 6.339587 TGGTGCATACATCTCGACATTATA 57.660 37.500 0.00 0.00 0.00 0.98
7369 8657 6.935167 TGGTGCATACATCTCGACATTATAT 58.065 36.000 0.00 0.00 0.00 0.86
7370 8658 6.813152 TGGTGCATACATCTCGACATTATATG 59.187 38.462 0.00 0.00 0.00 1.78
7372 8660 7.201470 GGTGCATACATCTCGACATTATATGTG 60.201 40.741 0.00 0.00 45.03 3.21
7373 8661 7.329471 GTGCATACATCTCGACATTATATGTGT 59.671 37.037 0.00 0.00 45.03 3.72
7374 8662 7.329226 TGCATACATCTCGACATTATATGTGTG 59.671 37.037 0.00 0.00 45.03 3.82
7375 8663 7.670007 CATACATCTCGACATTATATGTGTGC 58.330 38.462 0.00 0.00 45.03 4.57
7376 8664 5.600696 ACATCTCGACATTATATGTGTGCA 58.399 37.500 0.00 0.00 45.03 4.57
7377 8665 5.463392 ACATCTCGACATTATATGTGTGCAC 59.537 40.000 10.75 10.75 45.03 4.57
7378 8666 4.041723 TCTCGACATTATATGTGTGCACG 58.958 43.478 13.13 0.00 45.03 5.34
7379 8667 3.776340 TCGACATTATATGTGTGCACGT 58.224 40.909 13.13 3.31 45.03 4.49
7380 8668 3.794564 TCGACATTATATGTGTGCACGTC 59.205 43.478 13.13 8.82 45.03 4.34
7381 8669 3.549873 CGACATTATATGTGTGCACGTCA 59.450 43.478 13.13 14.22 45.03 4.35
7382 8670 4.032331 CGACATTATATGTGTGCACGTCAA 59.968 41.667 13.13 5.92 45.03 3.18
7383 8671 5.469373 ACATTATATGTGTGCACGTCAAG 57.531 39.130 13.13 0.00 43.01 3.02
7384 8672 4.935205 ACATTATATGTGTGCACGTCAAGT 59.065 37.500 13.13 9.32 43.01 3.16
7385 8673 5.411361 ACATTATATGTGTGCACGTCAAGTT 59.589 36.000 13.13 2.43 43.01 2.66
7386 8674 5.933187 TTATATGTGTGCACGTCAAGTTT 57.067 34.783 13.13 2.09 0.00 2.66
7387 8675 2.755836 ATGTGTGCACGTCAAGTTTC 57.244 45.000 13.13 0.00 0.00 2.78
7388 8676 0.371989 TGTGTGCACGTCAAGTTTCG 59.628 50.000 13.13 0.00 0.00 3.46
7389 8677 0.315869 GTGTGCACGTCAAGTTTCGG 60.316 55.000 13.13 0.00 0.00 4.30
7390 8678 0.460459 TGTGCACGTCAAGTTTCGGA 60.460 50.000 13.13 0.00 0.00 4.55
7391 8679 0.232303 GTGCACGTCAAGTTTCGGAG 59.768 55.000 0.00 0.00 0.00 4.63
7392 8680 0.103390 TGCACGTCAAGTTTCGGAGA 59.897 50.000 0.00 0.00 0.00 3.71
7393 8681 1.214367 GCACGTCAAGTTTCGGAGAA 58.786 50.000 0.00 0.00 45.90 2.87
7394 8682 1.595794 GCACGTCAAGTTTCGGAGAAA 59.404 47.619 0.00 0.00 45.90 2.52
7395 8683 2.031191 GCACGTCAAGTTTCGGAGAAAA 59.969 45.455 0.00 0.00 45.90 2.29
7396 8684 3.604392 CACGTCAAGTTTCGGAGAAAAC 58.396 45.455 0.00 0.00 45.90 2.43
7397 8685 2.610833 ACGTCAAGTTTCGGAGAAAACC 59.389 45.455 0.00 0.00 45.90 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.322008 CACCTCAACCCTCTGGAAGC 60.322 60.000 0.00 0.00 34.81 3.86
57 58 2.095847 TTGTTATCGGTGCGGACGC 61.096 57.895 10.13 10.13 42.35 5.19
71 72 0.818040 GACCTGGCCGTGAAGTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
75 76 1.003355 CATGACCTGGCCGTGAAGT 60.003 57.895 0.00 0.00 0.00 3.01
133 134 2.030562 CCACCGCCAGAACGAGTT 59.969 61.111 0.00 0.00 34.06 3.01
134 135 4.681978 GCCACCGCCAGAACGAGT 62.682 66.667 0.00 0.00 34.06 4.18
137 138 4.988598 ACTGCCACCGCCAGAACG 62.989 66.667 0.00 0.00 0.00 3.95
138 139 3.357079 CACTGCCACCGCCAGAAC 61.357 66.667 0.00 0.00 0.00 3.01
147 148 1.199097 CCATTTAACGACCACTGCCAC 59.801 52.381 0.00 0.00 0.00 5.01
158 159 5.769367 TCGAGATCTATGGACCATTTAACG 58.231 41.667 13.40 11.28 0.00 3.18
163 164 7.487822 AATACATCGAGATCTATGGACCATT 57.512 36.000 13.40 0.00 0.00 3.16
242 243 4.939271 AGTTTTTGTTTCCAATACCACGG 58.061 39.130 0.00 0.00 0.00 4.94
243 244 8.079809 AGAATAGTTTTTGTTTCCAATACCACG 58.920 33.333 0.00 0.00 0.00 4.94
280 281 7.626452 GCGTATGTATGAGCATCTACATCTGTA 60.626 40.741 7.95 0.00 38.96 2.74
296 297 5.346011 GGATGAGTGTATGTGCGTATGTATG 59.654 44.000 0.00 0.00 0.00 2.39
315 316 7.094631 GTGTGTATATGCGTTTATAGGGATGA 58.905 38.462 0.00 0.00 0.00 2.92
320 321 8.534333 AGAATGTGTGTATATGCGTTTATAGG 57.466 34.615 0.00 0.00 0.00 2.57
329 330 9.186323 CTTGTAGAGTAGAATGTGTGTATATGC 57.814 37.037 0.00 0.00 0.00 3.14
332 333 8.288689 TGCTTGTAGAGTAGAATGTGTGTATA 57.711 34.615 0.00 0.00 0.00 1.47
344 345 9.677567 GATCTCTTTAAGATGCTTGTAGAGTAG 57.322 37.037 14.44 0.00 45.06 2.57
347 348 7.421599 TCGATCTCTTTAAGATGCTTGTAGAG 58.578 38.462 0.00 0.00 45.06 2.43
348 349 7.067615 ACTCGATCTCTTTAAGATGCTTGTAGA 59.932 37.037 0.00 0.00 45.06 2.59
353 354 5.814705 CCAACTCGATCTCTTTAAGATGCTT 59.185 40.000 0.00 0.00 45.06 3.91
359 360 4.245660 TGTGCCAACTCGATCTCTTTAAG 58.754 43.478 0.00 0.00 0.00 1.85
361 362 3.953712 TGTGCCAACTCGATCTCTTTA 57.046 42.857 0.00 0.00 0.00 1.85
363 364 2.234661 TGATGTGCCAACTCGATCTCTT 59.765 45.455 0.00 0.00 0.00 2.85
375 376 3.943381 GTCAATCTCAAGATGATGTGCCA 59.057 43.478 0.00 0.00 34.49 4.92
412 413 1.390565 CAACCAACCCACCAAACGTA 58.609 50.000 0.00 0.00 0.00 3.57
414 415 1.227118 GCAACCAACCCACCAAACG 60.227 57.895 0.00 0.00 0.00 3.60
415 416 1.145156 GGCAACCAACCCACCAAAC 59.855 57.895 0.00 0.00 0.00 2.93
430 431 0.546507 TCATAGGGGTGAGTGTGGCA 60.547 55.000 0.00 0.00 0.00 4.92
432 433 0.175760 CGTCATAGGGGTGAGTGTGG 59.824 60.000 0.00 0.00 0.00 4.17
442 443 3.406361 GCGATGCGCGTCATAGGG 61.406 66.667 27.92 13.08 44.55 3.53
478 479 6.267471 ACTTGGCATTGGTTCTATTTTTCTGA 59.733 34.615 0.00 0.00 0.00 3.27
501 502 6.127026 GGTCACCAGATTTCAAGTCCTATACT 60.127 42.308 0.00 0.00 41.49 2.12
505 509 3.907474 TGGTCACCAGATTTCAAGTCCTA 59.093 43.478 0.00 0.00 0.00 2.94
531 535 5.470368 TCTTTCACGAACTGATCCTAGTTG 58.530 41.667 3.32 0.26 40.78 3.16
568 572 2.287103 AGTTTTTCTTTCACGTCTCGCC 59.713 45.455 0.00 0.00 0.00 5.54
601 606 1.989706 GGCAGAGCCTAGCTAGTACT 58.010 55.000 19.31 15.48 46.69 2.73
659 666 2.125350 CTCGCTGCTGAGGGTTCC 60.125 66.667 11.81 0.00 33.81 3.62
660 667 2.817396 GCTCGCTGCTGAGGGTTC 60.817 66.667 18.25 3.58 38.95 3.62
689 702 0.240945 CCCGTTGGTTGATTGTGAGC 59.759 55.000 0.00 0.00 0.00 4.26
694 707 1.081509 CACGCCCGTTGGTTGATTG 60.082 57.895 0.00 0.00 0.00 2.67
695 708 2.265182 CCACGCCCGTTGGTTGATT 61.265 57.895 0.00 0.00 0.00 2.57
699 722 4.636435 CCTCCACGCCCGTTGGTT 62.636 66.667 0.00 0.00 0.00 3.67
780 804 5.648178 TTCGCACTATATTTCGGCCTATA 57.352 39.130 0.00 0.00 0.00 1.31
781 805 4.530710 TTCGCACTATATTTCGGCCTAT 57.469 40.909 0.00 0.00 0.00 2.57
1095 1131 0.327924 TGGTGTCGATGGCCTTGAAT 59.672 50.000 3.32 0.00 0.00 2.57
1240 1282 3.495100 GCTCCACAACCTATATCCACCAG 60.495 52.174 0.00 0.00 0.00 4.00
1304 1347 0.962356 AACCAGCGAGGCCAATTCAG 60.962 55.000 5.01 0.00 43.14 3.02
1589 1639 8.655651 TTGAATGAAATTTTAACACCTTGGAC 57.344 30.769 0.00 0.00 36.07 4.02
1649 1699 6.127196 ACCTGTCAAGATTCAATCCTAGAGAC 60.127 42.308 0.00 0.00 0.00 3.36
1661 1711 5.240403 AGCAGAAAGAAACCTGTCAAGATTC 59.760 40.000 0.00 0.00 33.19 2.52
1678 1728 3.671433 GCAAGCATCATCGAAAGCAGAAA 60.671 43.478 0.00 0.00 0.00 2.52
1688 1738 1.376543 AACCTGAGCAAGCATCATCG 58.623 50.000 0.00 0.00 0.00 3.84
1711 1761 6.236017 TCAAACGGAATGAAGTATCACAAC 57.764 37.500 0.00 0.00 38.69 3.32
1725 1775 7.857734 TTTATGATCATTAGCTCAAACGGAA 57.142 32.000 14.65 0.00 0.00 4.30
1788 1838 4.480115 TCCCTAAGCGGATTCTCTTGATA 58.520 43.478 0.00 0.00 33.16 2.15
1795 1845 3.371965 TGTACTTCCCTAAGCGGATTCT 58.628 45.455 0.00 0.00 36.05 2.40
1804 1854 2.235402 CGCCTTCCTTGTACTTCCCTAA 59.765 50.000 0.00 0.00 0.00 2.69
2271 2322 7.649306 GGGACACAATTAACAGAATGCATATTC 59.351 37.037 0.00 0.00 42.53 1.75
2338 2390 2.335316 AGAAAGTTGCCACCGTACAA 57.665 45.000 0.00 0.00 0.00 2.41
2401 2453 4.681781 GCATCAACCAGCACTATACAGACT 60.682 45.833 0.00 0.00 0.00 3.24
2402 2454 3.557595 GCATCAACCAGCACTATACAGAC 59.442 47.826 0.00 0.00 0.00 3.51
2728 2797 6.835488 TCCAAAAGCTCATATAGGAAGCAAAT 59.165 34.615 10.12 0.00 0.00 2.32
2804 2873 8.943909 AAACGTCTTATATTTAGGAACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
2808 2877 7.390996 TGCCAAAACGTCTTATATTTAGGAACA 59.609 33.333 0.00 0.00 0.00 3.18
2846 2915 7.754625 TCCTAAATATAAGACGTTTTGGCAAC 58.245 34.615 0.00 0.00 30.97 4.17
2847 2916 7.925043 TCCTAAATATAAGACGTTTTGGCAA 57.075 32.000 0.83 0.00 30.97 4.52
2889 2958 8.626526 TGAAAGAAGTACCCTTGTTAAATCAAC 58.373 33.333 0.00 0.00 33.38 3.18
2894 2963 8.584063 AGTTTGAAAGAAGTACCCTTGTTAAA 57.416 30.769 0.00 0.82 33.38 1.52
2904 2973 5.614887 GCATCGGTGAGTTTGAAAGAAGTAC 60.615 44.000 0.00 0.00 0.00 2.73
2923 2992 3.303857 GCATCCTTTTCTGATCAGCATCG 60.304 47.826 18.36 6.41 0.00 3.84
3038 3113 9.535878 GTACTGAATAAAAGGATGGACTAAGAG 57.464 37.037 0.00 0.00 0.00 2.85
3045 3120 8.877864 AATGTTGTACTGAATAAAAGGATGGA 57.122 30.769 0.00 0.00 0.00 3.41
3156 3240 5.875224 TCCATCAGGACAATGTAACTCAAA 58.125 37.500 0.00 0.00 39.61 2.69
3417 3501 7.041780 ACACATGTTACATTCAGAGTCAAAGAC 60.042 37.037 0.00 0.00 0.00 3.01
3520 3604 0.941542 CCGGTCGAGCTTTCAAAACA 59.058 50.000 13.48 0.00 0.00 2.83
3552 3636 3.181455 ACCAATTTCCAGTTTTTCCCAGC 60.181 43.478 0.00 0.00 0.00 4.85
3587 3671 3.644966 TTCTGGGACAACACAAGAACT 57.355 42.857 0.00 0.00 38.70 3.01
3609 3693 1.810030 CGGGCTCAAAGCGGTCTAC 60.810 63.158 0.00 0.00 43.62 2.59
3614 3698 1.819632 ATTAGCGGGCTCAAAGCGG 60.820 57.895 0.00 0.00 43.62 5.52
3739 3826 1.066858 ACTGCCATGGACTCTAACACG 60.067 52.381 18.40 0.00 0.00 4.49
3742 3829 2.622436 GACACTGCCATGGACTCTAAC 58.378 52.381 18.40 0.00 0.00 2.34
3778 3865 7.973048 AAGTCATACTCCCTCTGTAACATAA 57.027 36.000 0.00 0.00 0.00 1.90
3822 3909 8.669946 TCACACAATCTACTGTCAAATGTTTA 57.330 30.769 0.00 0.00 0.00 2.01
3927 4014 5.947228 TGAACCTTTCTTTATCACTGCTG 57.053 39.130 0.00 0.00 0.00 4.41
3944 4031 3.751698 ACCGAGCTTACTTCATTTGAACC 59.248 43.478 0.00 0.00 0.00 3.62
3945 4032 5.049680 TGAACCGAGCTTACTTCATTTGAAC 60.050 40.000 0.00 0.00 0.00 3.18
3997 4084 7.359595 TGTGAAGTTGAACTACATATTTGTGC 58.640 34.615 0.00 0.00 36.53 4.57
4122 4210 4.923415 ACTAAATCTGGTAAAGCAGCCTT 58.077 39.130 4.30 3.28 0.00 4.35
4147 4235 7.898014 AAAAGAAAGTACAGTTCAAGGGAAT 57.102 32.000 10.80 0.00 35.05 3.01
4205 4929 9.921637 GAGAAACCAAAATCAACATGGTATTTA 57.078 29.630 0.00 0.00 46.46 1.40
4362 5096 7.040494 TGTTCACCCAAAACATATTATGCATG 58.960 34.615 10.16 0.00 31.90 4.06
4400 5142 5.571791 AGTTAAAACAAGTAGGCACCCTA 57.428 39.130 0.00 0.00 34.61 3.53
4423 5165 5.010282 AGTGAACACTGAAAACCTTTCTGT 58.990 37.500 6.67 6.00 40.75 3.41
4556 5311 6.128445 GCCACACAGATTCCTCGATATATTTG 60.128 42.308 0.00 0.00 0.00 2.32
4564 5319 1.751351 CTAGCCACACAGATTCCTCGA 59.249 52.381 0.00 0.00 0.00 4.04
4566 5321 5.163405 TGTTATCTAGCCACACAGATTCCTC 60.163 44.000 0.00 0.00 33.58 3.71
4610 5365 8.731275 TGAATGAAACATAGTTATGGTCGATT 57.269 30.769 4.33 0.24 38.00 3.34
4613 5368 7.904977 CACTTGAATGAAACATAGTTATGGTCG 59.095 37.037 4.33 0.00 38.00 4.79
4632 5387 5.885230 AAATGCTCGATCATTCACTTGAA 57.115 34.783 14.39 0.00 35.77 2.69
5170 5925 2.107950 TTTCACCTTCCGCTACCATG 57.892 50.000 0.00 0.00 0.00 3.66
5257 6051 8.902806 CATATGTGGTACCATTTGTTAGACATT 58.097 33.333 19.72 2.35 0.00 2.71
5258 6052 8.271458 TCATATGTGGTACCATTTGTTAGACAT 58.729 33.333 19.72 14.96 0.00 3.06
5299 6093 5.191722 AGACTATAGGGCATTGTTTCTCCAA 59.808 40.000 4.43 0.00 0.00 3.53
5406 6654 6.368805 GGATTAATCCAGGAAAGGTCATTCT 58.631 40.000 26.61 0.00 46.38 2.40
5433 6684 1.545841 GAATGTTTGTCACCCTCCCC 58.454 55.000 0.00 0.00 0.00 4.81
5442 6693 3.727726 CCACCCAAAAGGAATGTTTGTC 58.272 45.455 0.00 0.00 39.89 3.18
5483 6734 3.013921 AGAGTTTCGCAGTTTCAAACCA 58.986 40.909 0.00 0.00 31.50 3.67
5484 6735 3.692791 AGAGTTTCGCAGTTTCAAACC 57.307 42.857 0.00 0.00 31.50 3.27
5522 6773 2.477845 ATGCCAAAATGGAAGTTGCC 57.522 45.000 0.00 0.00 40.96 4.52
5550 6801 0.111253 ACTTGGAGTGCCCCTGAAAG 59.889 55.000 0.00 0.00 0.00 2.62
5746 6998 3.264947 TGACAGAAGATCCAAAGCATCG 58.735 45.455 0.00 0.00 0.00 3.84
5841 7099 1.872237 CGTGTTTCTGGTCGGTCACAT 60.872 52.381 0.00 0.00 0.00 3.21
5842 7100 0.528901 CGTGTTTCTGGTCGGTCACA 60.529 55.000 0.00 0.00 0.00 3.58
5843 7101 0.249155 TCGTGTTTCTGGTCGGTCAC 60.249 55.000 0.00 0.00 0.00 3.67
5844 7102 0.031585 CTCGTGTTTCTGGTCGGTCA 59.968 55.000 0.00 0.00 0.00 4.02
5845 7103 1.282930 GCTCGTGTTTCTGGTCGGTC 61.283 60.000 0.00 0.00 0.00 4.79
5846 7104 1.300697 GCTCGTGTTTCTGGTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
6047 7305 0.179045 ACACTCTGCGCAACTTCCTT 60.179 50.000 13.05 0.00 0.00 3.36
6283 7541 4.098914 AGGCTCACTGGTCACATTTTAA 57.901 40.909 0.00 0.00 0.00 1.52
6348 7606 7.278875 TGCAAAAGAGGTTTAAATGGTCAATT 58.721 30.769 0.00 0.00 0.00 2.32
6721 7979 3.777925 CGCCGGAGCAAACTCACG 61.778 66.667 5.05 0.00 45.42 4.35
6722 7980 2.357034 TCGCCGGAGCAAACTCAC 60.357 61.111 5.05 0.00 45.42 3.51
6723 7981 2.048222 CTCGCCGGAGCAAACTCA 60.048 61.111 5.05 0.00 45.42 3.41
6724 7982 1.374252 TTCTCGCCGGAGCAAACTC 60.374 57.895 5.05 0.00 40.26 3.01
6725 7983 1.668151 GTTCTCGCCGGAGCAAACT 60.668 57.895 5.05 0.00 40.26 2.66
6726 7984 2.677979 GGTTCTCGCCGGAGCAAAC 61.678 63.158 5.05 9.84 40.26 2.93
6727 7985 2.358247 GGTTCTCGCCGGAGCAAA 60.358 61.111 5.05 0.00 40.26 3.68
6728 7986 4.388499 GGGTTCTCGCCGGAGCAA 62.388 66.667 5.05 0.00 40.26 3.91
6731 7989 4.194720 CTCGGGTTCTCGCCGGAG 62.195 72.222 5.05 0.00 45.25 4.63
6733 7991 4.493747 GACTCGGGTTCTCGCCGG 62.494 72.222 0.00 0.00 0.00 6.13
6734 7992 3.441290 AGACTCGGGTTCTCGCCG 61.441 66.667 0.00 0.00 0.00 6.46
6735 7993 1.310933 TACAGACTCGGGTTCTCGCC 61.311 60.000 0.00 0.00 0.00 5.54
6736 7994 0.524862 TTACAGACTCGGGTTCTCGC 59.475 55.000 0.00 0.00 0.00 5.03
6737 7995 2.683867 AGATTACAGACTCGGGTTCTCG 59.316 50.000 0.00 0.00 0.00 4.04
6930 8217 7.068593 TGGAATCAACACTTGAGTTTCTTTCAT 59.931 33.333 0.00 0.00 43.98 2.57
7044 8332 5.456548 TCAGCTGAAAATGAAGAATTGCA 57.543 34.783 15.67 0.00 0.00 4.08
7051 8339 8.909671 GTTTAAGTTGATCAGCTGAAAATGAAG 58.090 33.333 22.50 0.00 0.00 3.02
7052 8340 8.412456 TGTTTAAGTTGATCAGCTGAAAATGAA 58.588 29.630 22.50 7.39 0.00 2.57
7173 8461 9.971922 AAGTTGAGAATTGATTCTTAAACCAAG 57.028 29.630 19.17 0.00 46.47 3.61
7186 8474 7.765695 AATAGGCTTTGAAGTTGAGAATTGA 57.234 32.000 0.00 0.00 0.00 2.57
7187 8475 8.734386 AGTAATAGGCTTTGAAGTTGAGAATTG 58.266 33.333 0.00 0.00 0.00 2.32
7188 8476 8.734386 CAGTAATAGGCTTTGAAGTTGAGAATT 58.266 33.333 0.00 0.00 0.00 2.17
7189 8477 7.148171 GCAGTAATAGGCTTTGAAGTTGAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
7190 8478 6.149474 GCAGTAATAGGCTTTGAAGTTGAGAA 59.851 38.462 0.00 0.00 0.00 2.87
7191 8479 5.643777 GCAGTAATAGGCTTTGAAGTTGAGA 59.356 40.000 0.00 0.00 0.00 3.27
7192 8480 5.412594 TGCAGTAATAGGCTTTGAAGTTGAG 59.587 40.000 0.00 0.00 0.00 3.02
7193 8481 5.181245 GTGCAGTAATAGGCTTTGAAGTTGA 59.819 40.000 0.00 0.00 0.00 3.18
7194 8482 5.393962 GTGCAGTAATAGGCTTTGAAGTTG 58.606 41.667 0.00 0.00 0.00 3.16
7195 8483 4.459337 GGTGCAGTAATAGGCTTTGAAGTT 59.541 41.667 0.00 0.00 0.00 2.66
7196 8484 4.010349 GGTGCAGTAATAGGCTTTGAAGT 58.990 43.478 0.00 0.00 0.00 3.01
7197 8485 3.378427 GGGTGCAGTAATAGGCTTTGAAG 59.622 47.826 0.00 0.00 0.00 3.02
7198 8486 3.352648 GGGTGCAGTAATAGGCTTTGAA 58.647 45.455 0.00 0.00 0.00 2.69
7199 8487 2.356741 GGGGTGCAGTAATAGGCTTTGA 60.357 50.000 0.00 0.00 0.00 2.69
7200 8488 2.024414 GGGGTGCAGTAATAGGCTTTG 58.976 52.381 0.00 0.00 0.00 2.77
7201 8489 1.923148 AGGGGTGCAGTAATAGGCTTT 59.077 47.619 0.00 0.00 0.00 3.51
7202 8490 1.596496 AGGGGTGCAGTAATAGGCTT 58.404 50.000 0.00 0.00 0.00 4.35
7203 8491 2.489528 TAGGGGTGCAGTAATAGGCT 57.510 50.000 0.00 0.00 0.00 4.58
7204 8492 3.118000 AGTTTAGGGGTGCAGTAATAGGC 60.118 47.826 0.00 0.00 0.00 3.93
7205 8493 4.772886 AGTTTAGGGGTGCAGTAATAGG 57.227 45.455 0.00 0.00 0.00 2.57
7206 8494 6.177610 TGAAAGTTTAGGGGTGCAGTAATAG 58.822 40.000 0.00 0.00 0.00 1.73
7207 8495 6.129414 TGAAAGTTTAGGGGTGCAGTAATA 57.871 37.500 0.00 0.00 0.00 0.98
7208 8496 4.993028 TGAAAGTTTAGGGGTGCAGTAAT 58.007 39.130 0.00 0.00 0.00 1.89
7209 8497 4.440826 TGAAAGTTTAGGGGTGCAGTAA 57.559 40.909 0.00 0.00 0.00 2.24
7210 8498 4.440826 TTGAAAGTTTAGGGGTGCAGTA 57.559 40.909 0.00 0.00 0.00 2.74
7211 8499 3.306472 TTGAAAGTTTAGGGGTGCAGT 57.694 42.857 0.00 0.00 0.00 4.40
7212 8500 4.157840 GGTATTGAAAGTTTAGGGGTGCAG 59.842 45.833 0.00 0.00 0.00 4.41
7213 8501 4.083565 GGTATTGAAAGTTTAGGGGTGCA 58.916 43.478 0.00 0.00 0.00 4.57
7214 8502 3.128068 CGGTATTGAAAGTTTAGGGGTGC 59.872 47.826 0.00 0.00 0.00 5.01
7215 8503 4.329392 ACGGTATTGAAAGTTTAGGGGTG 58.671 43.478 0.00 0.00 0.00 4.61
7216 8504 4.645863 ACGGTATTGAAAGTTTAGGGGT 57.354 40.909 0.00 0.00 0.00 4.95
7217 8505 4.157105 CCAACGGTATTGAAAGTTTAGGGG 59.843 45.833 0.00 0.00 0.00 4.79
7218 8506 4.763279 ACCAACGGTATTGAAAGTTTAGGG 59.237 41.667 0.00 0.00 32.11 3.53
7219 8507 5.952526 ACCAACGGTATTGAAAGTTTAGG 57.047 39.130 0.00 0.00 32.11 2.69
7220 8508 7.173735 AGGTTACCAACGGTATTGAAAGTTTAG 59.826 37.037 3.51 0.00 38.05 1.85
7221 8509 6.997476 AGGTTACCAACGGTATTGAAAGTTTA 59.003 34.615 3.51 0.00 38.05 2.01
7222 8510 5.829391 AGGTTACCAACGGTATTGAAAGTTT 59.171 36.000 3.51 0.00 38.05 2.66
7223 8511 5.239963 CAGGTTACCAACGGTATTGAAAGTT 59.760 40.000 3.51 0.00 38.05 2.66
7224 8512 4.758165 CAGGTTACCAACGGTATTGAAAGT 59.242 41.667 3.51 0.00 38.05 2.66
7225 8513 4.998672 TCAGGTTACCAACGGTATTGAAAG 59.001 41.667 3.51 0.00 38.05 2.62
7226 8514 4.970711 TCAGGTTACCAACGGTATTGAAA 58.029 39.130 3.51 0.00 38.05 2.69
7227 8515 4.563993 CCTCAGGTTACCAACGGTATTGAA 60.564 45.833 3.51 0.00 38.05 2.69
7228 8516 3.055675 CCTCAGGTTACCAACGGTATTGA 60.056 47.826 3.51 0.00 38.05 2.57
7229 8517 3.267483 CCTCAGGTTACCAACGGTATTG 58.733 50.000 3.51 0.00 38.05 1.90
7230 8518 2.908351 ACCTCAGGTTACCAACGGTATT 59.092 45.455 3.51 0.00 38.05 1.89
7231 8519 2.543635 ACCTCAGGTTACCAACGGTAT 58.456 47.619 3.51 0.00 38.05 2.73
7232 8520 2.014010 ACCTCAGGTTACCAACGGTA 57.986 50.000 3.51 0.00 37.09 4.02
7233 8521 1.071228 GAACCTCAGGTTACCAACGGT 59.929 52.381 9.81 3.37 46.95 4.83
7234 8522 1.804601 GAACCTCAGGTTACCAACGG 58.195 55.000 9.81 2.70 46.95 4.44
7235 8523 1.425412 CGAACCTCAGGTTACCAACG 58.575 55.000 9.81 4.47 46.95 4.10
7236 8524 1.154197 GCGAACCTCAGGTTACCAAC 58.846 55.000 9.81 0.00 46.95 3.77
7237 8525 0.759959 TGCGAACCTCAGGTTACCAA 59.240 50.000 9.81 0.00 46.95 3.67
7238 8526 0.759959 TTGCGAACCTCAGGTTACCA 59.240 50.000 9.81 6.82 46.95 3.25
7239 8527 1.804748 CTTTGCGAACCTCAGGTTACC 59.195 52.381 9.81 3.91 46.95 2.85
7240 8528 2.479275 GACTTTGCGAACCTCAGGTTAC 59.521 50.000 9.81 5.54 46.95 2.50
7241 8529 2.762745 GACTTTGCGAACCTCAGGTTA 58.237 47.619 9.81 0.00 46.95 2.85
7243 8531 0.600255 CGACTTTGCGAACCTCAGGT 60.600 55.000 0.00 0.00 37.65 4.00
7244 8532 1.291877 CCGACTTTGCGAACCTCAGG 61.292 60.000 0.00 0.00 0.00 3.86
7245 8533 0.319555 TCCGACTTTGCGAACCTCAG 60.320 55.000 0.00 0.00 0.00 3.35
7246 8534 0.105224 TTCCGACTTTGCGAACCTCA 59.895 50.000 0.00 0.00 0.00 3.86
7247 8535 1.223187 TTTCCGACTTTGCGAACCTC 58.777 50.000 0.00 0.00 0.00 3.85
7248 8536 1.892209 ATTTCCGACTTTGCGAACCT 58.108 45.000 0.00 0.00 0.00 3.50
7249 8537 2.581637 GAATTTCCGACTTTGCGAACC 58.418 47.619 0.00 0.00 0.00 3.62
7250 8538 2.230864 CGAATTTCCGACTTTGCGAAC 58.769 47.619 0.00 0.00 0.00 3.95
7251 8539 1.868498 ACGAATTTCCGACTTTGCGAA 59.132 42.857 0.00 0.00 0.00 4.70
7252 8540 1.504359 ACGAATTTCCGACTTTGCGA 58.496 45.000 0.00 0.00 0.00 5.10
7253 8541 1.969256 CAACGAATTTCCGACTTTGCG 59.031 47.619 0.00 0.00 0.00 4.85
7254 8542 2.287368 ACCAACGAATTTCCGACTTTGC 60.287 45.455 0.00 0.00 0.00 3.68
7255 8543 3.296628 CACCAACGAATTTCCGACTTTG 58.703 45.455 0.00 0.00 0.00 2.77
7256 8544 2.287368 GCACCAACGAATTTCCGACTTT 60.287 45.455 0.00 0.00 0.00 2.66
7257 8545 1.265905 GCACCAACGAATTTCCGACTT 59.734 47.619 0.00 0.00 0.00 3.01
7258 8546 0.872388 GCACCAACGAATTTCCGACT 59.128 50.000 0.00 0.00 0.00 4.18
7259 8547 0.872388 AGCACCAACGAATTTCCGAC 59.128 50.000 0.00 0.00 0.00 4.79
7260 8548 1.153353 GAGCACCAACGAATTTCCGA 58.847 50.000 0.00 0.00 0.00 4.55
7261 8549 0.168128 GGAGCACCAACGAATTTCCG 59.832 55.000 0.00 0.00 35.97 4.30
7262 8550 0.526211 GGGAGCACCAACGAATTTCC 59.474 55.000 1.58 0.00 39.85 3.13
7263 8551 0.168128 CGGGAGCACCAACGAATTTC 59.832 55.000 1.58 0.00 40.22 2.17
7264 8552 1.241315 CCGGGAGCACCAACGAATTT 61.241 55.000 1.58 0.00 40.22 1.82
7265 8553 1.674322 CCGGGAGCACCAACGAATT 60.674 57.895 1.58 0.00 40.22 2.17
7266 8554 2.046314 CCGGGAGCACCAACGAAT 60.046 61.111 1.58 0.00 40.22 3.34
7267 8555 4.323477 CCCGGGAGCACCAACGAA 62.323 66.667 18.48 0.00 40.22 3.85
7269 8557 4.760047 CTCCCGGGAGCACCAACG 62.760 72.222 36.90 12.91 40.22 4.10
7292 8580 1.210155 AAAAATCGCACGCAGGAGC 59.790 52.632 0.00 0.00 37.42 4.70
7339 8627 5.182950 TGTCGAGATGTATGCACCAATTTTT 59.817 36.000 0.00 0.00 0.00 1.94
7340 8628 4.699735 TGTCGAGATGTATGCACCAATTTT 59.300 37.500 0.00 0.00 0.00 1.82
7341 8629 4.260985 TGTCGAGATGTATGCACCAATTT 58.739 39.130 0.00 0.00 0.00 1.82
7342 8630 3.872696 TGTCGAGATGTATGCACCAATT 58.127 40.909 0.00 0.00 0.00 2.32
7343 8631 3.541996 TGTCGAGATGTATGCACCAAT 57.458 42.857 0.00 0.00 0.00 3.16
7344 8632 3.541996 ATGTCGAGATGTATGCACCAA 57.458 42.857 0.00 0.00 0.00 3.67
7345 8633 3.541996 AATGTCGAGATGTATGCACCA 57.458 42.857 0.00 0.00 0.00 4.17
7346 8634 6.813649 ACATATAATGTCGAGATGTATGCACC 59.186 38.462 19.56 0.00 39.92 5.01
7347 8635 7.329471 ACACATATAATGTCGAGATGTATGCAC 59.671 37.037 19.56 0.00 42.70 4.57
7348 8636 7.329226 CACACATATAATGTCGAGATGTATGCA 59.671 37.037 19.56 0.00 42.70 3.96
7349 8637 7.670007 CACACATATAATGTCGAGATGTATGC 58.330 38.462 19.56 0.00 42.70 3.14
7350 8638 7.329226 TGCACACATATAATGTCGAGATGTATG 59.671 37.037 18.69 18.69 42.70 2.39
7351 8639 7.329471 GTGCACACATATAATGTCGAGATGTAT 59.671 37.037 13.17 0.00 42.70 2.29
7352 8640 6.640907 GTGCACACATATAATGTCGAGATGTA 59.359 38.462 13.17 0.00 42.70 2.29
7353 8641 5.463392 GTGCACACATATAATGTCGAGATGT 59.537 40.000 13.17 0.00 42.70 3.06
7354 8642 5.387752 CGTGCACACATATAATGTCGAGATG 60.388 44.000 18.64 0.00 42.70 2.90
7355 8643 4.681483 CGTGCACACATATAATGTCGAGAT 59.319 41.667 18.64 0.00 42.70 2.75
7356 8644 4.041723 CGTGCACACATATAATGTCGAGA 58.958 43.478 18.64 0.00 42.70 4.04
7357 8645 3.796717 ACGTGCACACATATAATGTCGAG 59.203 43.478 18.64 0.00 42.70 4.04
7358 8646 3.776340 ACGTGCACACATATAATGTCGA 58.224 40.909 18.64 0.00 42.70 4.20
7359 8647 3.549873 TGACGTGCACACATATAATGTCG 59.450 43.478 18.64 0.00 42.70 4.35
7360 8648 5.063438 ACTTGACGTGCACACATATAATGTC 59.937 40.000 18.64 12.57 42.70 3.06
7361 8649 4.935205 ACTTGACGTGCACACATATAATGT 59.065 37.500 18.64 2.52 46.22 2.71
7362 8650 5.469373 ACTTGACGTGCACACATATAATG 57.531 39.130 18.64 0.00 0.00 1.90
7363 8651 6.494893 AAACTTGACGTGCACACATATAAT 57.505 33.333 18.64 0.00 0.00 1.28
7364 8652 5.388994 CGAAACTTGACGTGCACACATATAA 60.389 40.000 18.64 2.04 0.00 0.98
7365 8653 4.090786 CGAAACTTGACGTGCACACATATA 59.909 41.667 18.64 1.12 0.00 0.86
7366 8654 3.120683 CGAAACTTGACGTGCACACATAT 60.121 43.478 18.64 4.91 0.00 1.78
7367 8655 2.219903 CGAAACTTGACGTGCACACATA 59.780 45.455 18.64 6.68 0.00 2.29
7368 8656 1.003972 CGAAACTTGACGTGCACACAT 60.004 47.619 18.64 0.56 0.00 3.21
7369 8657 0.371989 CGAAACTTGACGTGCACACA 59.628 50.000 18.64 13.38 0.00 3.72
7370 8658 0.315869 CCGAAACTTGACGTGCACAC 60.316 55.000 18.64 10.76 0.00 3.82
7371 8659 0.460459 TCCGAAACTTGACGTGCACA 60.460 50.000 18.64 0.00 0.00 4.57
7372 8660 0.232303 CTCCGAAACTTGACGTGCAC 59.768 55.000 6.82 6.82 0.00 4.57
7373 8661 0.103390 TCTCCGAAACTTGACGTGCA 59.897 50.000 0.00 0.00 0.00 4.57
7374 8662 1.214367 TTCTCCGAAACTTGACGTGC 58.786 50.000 0.00 0.00 0.00 5.34
7375 8663 3.545426 GGTTTTCTCCGAAACTTGACGTG 60.545 47.826 0.00 0.00 39.05 4.49
7376 8664 2.610833 GGTTTTCTCCGAAACTTGACGT 59.389 45.455 0.00 0.00 39.05 4.34
7377 8665 3.249013 GGTTTTCTCCGAAACTTGACG 57.751 47.619 0.00 0.00 39.05 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.