Multiple sequence alignment - TraesCS1D01G244800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G244800 chr1D 100.000 2955 0 0 386 3340 335411923 335414877 0.000000e+00 5457
1 TraesCS1D01G244800 chr1D 86.817 2215 161 54 634 2800 828939 831070 0.000000e+00 2351
2 TraesCS1D01G244800 chr1D 88.955 1847 160 27 634 2448 414451241 414449407 0.000000e+00 2241
3 TraesCS1D01G244800 chr1D 100.000 111 0 0 1 111 335411538 335411648 4.370000e-49 206
4 TraesCS1D01G244800 chr5B 87.125 2765 218 55 633 3334 708182154 708179465 0.000000e+00 3007
5 TraesCS1D01G244800 chr6D 92.147 1961 92 22 632 2559 447818012 447819943 0.000000e+00 2712
6 TraesCS1D01G244800 chr3D 90.257 1981 126 31 632 2565 575254525 575252565 0.000000e+00 2527
7 TraesCS1D01G244800 chr3D 89.465 1851 142 33 634 2448 45063223 45061390 0.000000e+00 2289
8 TraesCS1D01G244800 chr3D 84.232 723 86 15 2622 3333 45061184 45060479 0.000000e+00 678
9 TraesCS1D01G244800 chr7B 86.732 2344 202 56 980 3278 53112093 53109814 0.000000e+00 2505
10 TraesCS1D01G244800 chr2B 84.844 2593 264 59 655 3155 748926910 748924355 0.000000e+00 2492
11 TraesCS1D01G244800 chr2B 90.245 1630 97 24 1720 3335 80094006 80092425 0.000000e+00 2073
12 TraesCS1D01G244800 chr2B 88.098 1504 134 18 1725 3195 706691353 706689862 0.000000e+00 1744
13 TraesCS1D01G244800 chr2B 80.357 1064 144 40 633 1646 706692383 706691335 0.000000e+00 747
14 TraesCS1D01G244800 chr5A 92.277 1748 93 18 851 2565 574041132 574039394 0.000000e+00 2442
15 TraesCS1D01G244800 chr5A 89.388 1470 93 13 634 2088 567504216 567502795 0.000000e+00 1792
16 TraesCS1D01G244800 chr5A 86.489 977 96 19 634 1582 701985671 701984703 0.000000e+00 1040
17 TraesCS1D01G244800 chr7D 89.290 1858 148 35 634 2448 92234551 92232702 0.000000e+00 2281
18 TraesCS1D01G244800 chr7D 89.123 1848 156 29 634 2448 631818588 631816753 0.000000e+00 2257
19 TraesCS1D01G244800 chr7D 84.405 731 85 16 2622 3340 92232496 92231783 0.000000e+00 691
20 TraesCS1D01G244800 chr7D 84.405 731 85 16 2622 3340 631816547 631815834 0.000000e+00 691
21 TraesCS1D01G244800 chr5D 89.134 1859 148 38 634 2448 408555343 408553495 0.000000e+00 2265
22 TraesCS1D01G244800 chr5D 87.615 1962 163 45 635 2559 382518084 382520002 0.000000e+00 2204
23 TraesCS1D01G244800 chr5D 87.092 1441 133 30 1870 3280 257416325 257414908 0.000000e+00 1581
24 TraesCS1D01G244800 chr5D 84.203 728 89 13 2622 3340 408553289 408552579 0.000000e+00 684
25 TraesCS1D01G244800 chr3B 92.869 1192 71 5 1975 3155 609965006 609966194 0.000000e+00 1718
26 TraesCS1D01G244800 chr3B 84.696 575 46 23 635 1188 805626316 805626869 1.360000e-148 536
27 TraesCS1D01G244800 chr6A 90.458 1331 79 17 630 1928 56130147 56128833 0.000000e+00 1711
28 TraesCS1D01G244800 chr4A 93.700 619 29 3 2113 2722 708362704 708362087 0.000000e+00 918
29 TraesCS1D01G244800 chr4A 91.930 632 42 5 2716 3340 708361668 708361039 0.000000e+00 876
30 TraesCS1D01G244800 chr3A 86.441 236 30 2 634 867 648267836 648267601 1.190000e-64 257
31 TraesCS1D01G244800 chr1B 85.490 255 22 9 386 626 451608076 451608329 5.530000e-63 252
32 TraesCS1D01G244800 chr1B 92.035 113 6 2 2 111 451607922 451608034 4.460000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G244800 chr1D 335411538 335414877 3339 False 2831.5 5457 100.0000 1 3340 2 chr1D.!!$F2 3339
1 TraesCS1D01G244800 chr1D 828939 831070 2131 False 2351.0 2351 86.8170 634 2800 1 chr1D.!!$F1 2166
2 TraesCS1D01G244800 chr1D 414449407 414451241 1834 True 2241.0 2241 88.9550 634 2448 1 chr1D.!!$R1 1814
3 TraesCS1D01G244800 chr5B 708179465 708182154 2689 True 3007.0 3007 87.1250 633 3334 1 chr5B.!!$R1 2701
4 TraesCS1D01G244800 chr6D 447818012 447819943 1931 False 2712.0 2712 92.1470 632 2559 1 chr6D.!!$F1 1927
5 TraesCS1D01G244800 chr3D 575252565 575254525 1960 True 2527.0 2527 90.2570 632 2565 1 chr3D.!!$R1 1933
6 TraesCS1D01G244800 chr3D 45060479 45063223 2744 True 1483.5 2289 86.8485 634 3333 2 chr3D.!!$R2 2699
7 TraesCS1D01G244800 chr7B 53109814 53112093 2279 True 2505.0 2505 86.7320 980 3278 1 chr7B.!!$R1 2298
8 TraesCS1D01G244800 chr2B 748924355 748926910 2555 True 2492.0 2492 84.8440 655 3155 1 chr2B.!!$R2 2500
9 TraesCS1D01G244800 chr2B 80092425 80094006 1581 True 2073.0 2073 90.2450 1720 3335 1 chr2B.!!$R1 1615
10 TraesCS1D01G244800 chr2B 706689862 706692383 2521 True 1245.5 1744 84.2275 633 3195 2 chr2B.!!$R3 2562
11 TraesCS1D01G244800 chr5A 574039394 574041132 1738 True 2442.0 2442 92.2770 851 2565 1 chr5A.!!$R2 1714
12 TraesCS1D01G244800 chr5A 567502795 567504216 1421 True 1792.0 1792 89.3880 634 2088 1 chr5A.!!$R1 1454
13 TraesCS1D01G244800 chr5A 701984703 701985671 968 True 1040.0 1040 86.4890 634 1582 1 chr5A.!!$R3 948
14 TraesCS1D01G244800 chr7D 92231783 92234551 2768 True 1486.0 2281 86.8475 634 3340 2 chr7D.!!$R1 2706
15 TraesCS1D01G244800 chr7D 631815834 631818588 2754 True 1474.0 2257 86.7640 634 3340 2 chr7D.!!$R2 2706
16 TraesCS1D01G244800 chr5D 382518084 382520002 1918 False 2204.0 2204 87.6150 635 2559 1 chr5D.!!$F1 1924
17 TraesCS1D01G244800 chr5D 257414908 257416325 1417 True 1581.0 1581 87.0920 1870 3280 1 chr5D.!!$R1 1410
18 TraesCS1D01G244800 chr5D 408552579 408555343 2764 True 1474.5 2265 86.6685 634 3340 2 chr5D.!!$R2 2706
19 TraesCS1D01G244800 chr3B 609965006 609966194 1188 False 1718.0 1718 92.8690 1975 3155 1 chr3B.!!$F1 1180
20 TraesCS1D01G244800 chr3B 805626316 805626869 553 False 536.0 536 84.6960 635 1188 1 chr3B.!!$F2 553
21 TraesCS1D01G244800 chr6A 56128833 56130147 1314 True 1711.0 1711 90.4580 630 1928 1 chr6A.!!$R1 1298
22 TraesCS1D01G244800 chr4A 708361039 708362704 1665 True 897.0 918 92.8150 2113 3340 2 chr4A.!!$R1 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.037605 CGACAACGTTAAGGGCCTCT 60.038 55.0 6.46 0.0 34.56 3.69 F
725 729 0.107831 AAGCTACCAACAAGCGGTCA 59.892 50.0 0.00 0.0 44.87 4.02 F
1199 1345 0.623723 TTGATTAGTGAGGGTGGGGC 59.376 55.0 0.00 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 2490 0.392193 ACCCATCTTTCAGCAGCTCG 60.392 55.000 0.00 0.0 0.0 5.03 R
2303 2523 3.507233 TGGCCTTGATTTGCTCTAACTTG 59.493 43.478 3.32 0.0 0.0 3.16 R
2939 3744 0.317160 TCATCGTTGCACTTCTCCGT 59.683 50.000 0.00 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.946038 CGTAAGCGGGATTGGGAA 57.054 55.556 0.00 0.00 0.00 3.97
19 20 2.390427 CGTAAGCGGGATTGGGAAC 58.610 57.895 0.00 0.00 0.00 3.62
36 37 2.551032 GGAACCCTTTGTTTACTCACCG 59.449 50.000 0.00 0.00 37.29 4.94
37 38 2.265589 ACCCTTTGTTTACTCACCGG 57.734 50.000 0.00 0.00 0.00 5.28
38 39 1.770061 ACCCTTTGTTTACTCACCGGA 59.230 47.619 9.46 0.00 0.00 5.14
39 40 2.374170 ACCCTTTGTTTACTCACCGGAT 59.626 45.455 9.46 0.00 0.00 4.18
40 41 2.747446 CCCTTTGTTTACTCACCGGATG 59.253 50.000 9.46 2.48 0.00 3.51
41 42 2.161609 CCTTTGTTTACTCACCGGATGC 59.838 50.000 9.46 0.00 0.00 3.91
42 43 1.434555 TTGTTTACTCACCGGATGCG 58.565 50.000 9.46 0.00 0.00 4.73
43 44 1.017177 TGTTTACTCACCGGATGCGC 61.017 55.000 9.46 0.00 0.00 6.09
44 45 1.448893 TTTACTCACCGGATGCGCC 60.449 57.895 9.46 0.00 0.00 6.53
45 46 2.173758 TTTACTCACCGGATGCGCCA 62.174 55.000 9.46 0.00 35.94 5.69
46 47 1.966901 TTACTCACCGGATGCGCCAT 61.967 55.000 9.46 0.00 35.94 4.40
47 48 1.110518 TACTCACCGGATGCGCCATA 61.111 55.000 9.46 0.00 35.94 2.74
48 49 1.004560 CTCACCGGATGCGCCATAT 60.005 57.895 9.46 0.00 35.94 1.78
49 50 0.603707 CTCACCGGATGCGCCATATT 60.604 55.000 9.46 0.00 35.94 1.28
50 51 0.179032 TCACCGGATGCGCCATATTT 60.179 50.000 9.46 0.00 35.94 1.40
51 52 0.667993 CACCGGATGCGCCATATTTT 59.332 50.000 9.46 0.00 35.94 1.82
52 53 1.066908 CACCGGATGCGCCATATTTTT 59.933 47.619 9.46 0.00 35.94 1.94
53 54 1.336755 ACCGGATGCGCCATATTTTTC 59.663 47.619 9.46 0.00 35.94 2.29
54 55 1.608590 CCGGATGCGCCATATTTTTCT 59.391 47.619 4.18 0.00 35.94 2.52
55 56 2.350772 CCGGATGCGCCATATTTTTCTC 60.351 50.000 4.18 0.00 35.94 2.87
56 57 2.549754 CGGATGCGCCATATTTTTCTCT 59.450 45.455 4.18 0.00 35.94 3.10
57 58 3.003689 CGGATGCGCCATATTTTTCTCTT 59.996 43.478 4.18 0.00 35.94 2.85
58 59 4.293415 GGATGCGCCATATTTTTCTCTTG 58.707 43.478 4.18 0.00 36.34 3.02
59 60 3.149436 TGCGCCATATTTTTCTCTTGC 57.851 42.857 4.18 0.00 0.00 4.01
60 61 2.111756 GCGCCATATTTTTCTCTTGCG 58.888 47.619 0.00 0.00 43.26 4.85
61 62 2.719798 CGCCATATTTTTCTCTTGCGG 58.280 47.619 0.00 0.00 37.33 5.69
62 63 2.541588 CGCCATATTTTTCTCTTGCGGG 60.542 50.000 0.00 0.00 37.33 6.13
63 64 2.427095 GCCATATTTTTCTCTTGCGGGT 59.573 45.455 0.00 0.00 0.00 5.28
64 65 3.489229 GCCATATTTTTCTCTTGCGGGTC 60.489 47.826 0.00 0.00 0.00 4.46
65 66 3.242739 CCATATTTTTCTCTTGCGGGTCG 60.243 47.826 0.00 0.00 0.00 4.79
66 67 2.178912 ATTTTTCTCTTGCGGGTCGA 57.821 45.000 0.00 0.00 0.00 4.20
67 68 1.223187 TTTTTCTCTTGCGGGTCGAC 58.777 50.000 7.13 7.13 0.00 4.20
68 69 0.105224 TTTTCTCTTGCGGGTCGACA 59.895 50.000 18.91 0.00 0.00 4.35
69 70 0.319555 TTTCTCTTGCGGGTCGACAG 60.320 55.000 18.91 11.81 0.00 3.51
70 71 2.125912 CTCTTGCGGGTCGACAGG 60.126 66.667 18.91 9.33 0.00 4.00
71 72 4.373116 TCTTGCGGGTCGACAGGC 62.373 66.667 18.91 19.26 0.00 4.85
77 78 3.637273 GGGTCGACAGGCCAGGTT 61.637 66.667 18.91 0.00 46.12 3.50
78 79 2.288025 GGGTCGACAGGCCAGGTTA 61.288 63.158 18.91 0.00 46.12 2.85
79 80 1.675219 GGTCGACAGGCCAGGTTAA 59.325 57.895 18.91 0.00 43.06 2.01
80 81 0.252197 GGTCGACAGGCCAGGTTAAT 59.748 55.000 18.91 0.00 43.06 1.40
81 82 1.339727 GGTCGACAGGCCAGGTTAATT 60.340 52.381 18.91 0.00 43.06 1.40
82 83 1.737793 GTCGACAGGCCAGGTTAATTG 59.262 52.381 11.55 0.00 0.00 2.32
83 84 1.094785 CGACAGGCCAGGTTAATTGG 58.905 55.000 5.01 4.95 38.78 3.16
84 85 1.339631 CGACAGGCCAGGTTAATTGGA 60.340 52.381 5.01 0.00 37.96 3.53
85 86 2.092323 GACAGGCCAGGTTAATTGGAC 58.908 52.381 5.01 9.37 44.54 4.02
87 88 3.259592 GGCCAGGTTAATTGGACGT 57.740 52.632 11.87 0.00 37.96 4.34
88 89 0.808755 GGCCAGGTTAATTGGACGTG 59.191 55.000 11.87 8.61 37.96 4.49
90 91 2.194201 CCAGGTTAATTGGACGTGGT 57.806 50.000 19.35 0.00 44.14 4.16
91 92 3.337694 CCAGGTTAATTGGACGTGGTA 57.662 47.619 19.35 0.00 44.14 3.25
92 93 3.267483 CCAGGTTAATTGGACGTGGTAG 58.733 50.000 19.35 3.66 44.14 3.18
93 94 3.307199 CCAGGTTAATTGGACGTGGTAGT 60.307 47.826 19.35 0.00 44.14 2.73
94 95 3.930848 CAGGTTAATTGGACGTGGTAGTC 59.069 47.826 0.00 0.00 40.25 2.59
95 96 3.579586 AGGTTAATTGGACGTGGTAGTCA 59.420 43.478 0.00 0.00 42.62 3.41
96 97 4.040706 AGGTTAATTGGACGTGGTAGTCAA 59.959 41.667 0.00 0.00 42.62 3.18
97 98 4.756135 GGTTAATTGGACGTGGTAGTCAAA 59.244 41.667 0.00 0.00 42.62 2.69
98 99 5.334337 GGTTAATTGGACGTGGTAGTCAAAC 60.334 44.000 0.00 0.00 42.62 2.93
99 100 2.983907 TTGGACGTGGTAGTCAAACA 57.016 45.000 0.00 0.00 42.62 2.83
100 101 3.478857 TTGGACGTGGTAGTCAAACAT 57.521 42.857 0.00 0.00 42.62 2.71
101 102 4.603989 TTGGACGTGGTAGTCAAACATA 57.396 40.909 0.00 0.00 42.62 2.29
102 103 3.916761 TGGACGTGGTAGTCAAACATAC 58.083 45.455 0.00 0.00 42.62 2.39
103 104 2.919229 GGACGTGGTAGTCAAACATACG 59.081 50.000 0.00 0.00 42.62 3.06
104 105 3.366273 GGACGTGGTAGTCAAACATACGA 60.366 47.826 0.00 0.00 42.62 3.43
105 106 3.568538 ACGTGGTAGTCAAACATACGAC 58.431 45.455 0.00 0.00 35.99 4.34
106 107 3.254166 ACGTGGTAGTCAAACATACGACT 59.746 43.478 0.00 0.00 44.51 4.18
107 108 4.232221 CGTGGTAGTCAAACATACGACTT 58.768 43.478 0.00 0.00 42.41 3.01
108 109 4.089493 CGTGGTAGTCAAACATACGACTTG 59.911 45.833 0.00 0.00 42.41 3.16
109 110 5.224888 GTGGTAGTCAAACATACGACTTGA 58.775 41.667 0.00 0.00 42.41 3.02
110 111 5.345202 GTGGTAGTCAAACATACGACTTGAG 59.655 44.000 0.00 0.00 42.41 3.02
402 403 3.143338 TAGTGCAGTTCGTGGCCA 58.857 55.556 0.00 0.00 0.00 5.36
403 404 1.676968 TAGTGCAGTTCGTGGCCAT 59.323 52.632 9.72 0.00 0.00 4.40
404 405 0.673333 TAGTGCAGTTCGTGGCCATG 60.673 55.000 19.62 19.62 0.00 3.66
405 406 2.112928 TGCAGTTCGTGGCCATGT 59.887 55.556 24.24 2.45 0.00 3.21
406 407 1.528076 TGCAGTTCGTGGCCATGTT 60.528 52.632 24.24 8.99 0.00 2.71
407 408 1.210155 GCAGTTCGTGGCCATGTTC 59.790 57.895 24.24 17.24 0.00 3.18
408 409 1.237285 GCAGTTCGTGGCCATGTTCT 61.237 55.000 24.24 19.02 0.00 3.01
409 410 1.238439 CAGTTCGTGGCCATGTTCTT 58.762 50.000 24.24 6.53 0.00 2.52
410 411 1.197721 CAGTTCGTGGCCATGTTCTTC 59.802 52.381 24.24 11.12 0.00 2.87
411 412 0.521735 GTTCGTGGCCATGTTCTTCC 59.478 55.000 24.24 0.00 0.00 3.46
412 413 0.109532 TTCGTGGCCATGTTCTTCCA 59.890 50.000 24.24 0.02 0.00 3.53
413 414 0.109532 TCGTGGCCATGTTCTTCCAA 59.890 50.000 24.24 0.00 0.00 3.53
414 415 0.240945 CGTGGCCATGTTCTTCCAAC 59.759 55.000 17.42 0.00 0.00 3.77
415 416 1.327303 GTGGCCATGTTCTTCCAACA 58.673 50.000 9.72 0.00 34.31 3.33
416 417 1.000274 GTGGCCATGTTCTTCCAACAC 60.000 52.381 9.72 0.00 32.37 3.32
417 418 0.240945 GGCCATGTTCTTCCAACACG 59.759 55.000 0.00 0.00 32.37 4.49
418 419 0.951558 GCCATGTTCTTCCAACACGT 59.048 50.000 0.00 0.00 32.37 4.49
419 420 2.147958 GCCATGTTCTTCCAACACGTA 58.852 47.619 0.00 0.00 32.37 3.57
420 421 2.159627 GCCATGTTCTTCCAACACGTAG 59.840 50.000 0.00 0.00 32.37 3.51
422 423 4.562082 CCATGTTCTTCCAACACGTAGTA 58.438 43.478 0.00 0.00 41.61 1.82
423 424 5.175859 CCATGTTCTTCCAACACGTAGTAT 58.824 41.667 0.00 0.00 41.61 2.12
424 425 6.334989 CCATGTTCTTCCAACACGTAGTATA 58.665 40.000 0.00 0.00 41.61 1.47
425 426 6.814644 CCATGTTCTTCCAACACGTAGTATAA 59.185 38.462 0.00 0.00 41.61 0.98
426 427 7.494625 CCATGTTCTTCCAACACGTAGTATAAT 59.505 37.037 0.00 0.00 41.61 1.28
427 428 9.524106 CATGTTCTTCCAACACGTAGTATAATA 57.476 33.333 0.00 0.00 41.61 0.98
428 429 8.915871 TGTTCTTCCAACACGTAGTATAATAC 57.084 34.615 0.14 0.14 41.61 1.89
437 438 3.978759 CGTAGTATAATACGTCGTCGGG 58.021 50.000 21.27 0.00 42.73 5.14
438 439 2.977405 AGTATAATACGTCGTCGGGC 57.023 50.000 0.00 0.00 41.85 6.13
439 440 2.498167 AGTATAATACGTCGTCGGGCT 58.502 47.619 0.00 0.00 41.85 5.19
440 441 2.225019 AGTATAATACGTCGTCGGGCTG 59.775 50.000 0.00 0.00 41.85 4.85
441 442 1.027357 ATAATACGTCGTCGGGCTGT 58.973 50.000 0.00 0.00 41.85 4.40
442 443 0.810648 TAATACGTCGTCGGGCTGTT 59.189 50.000 0.00 0.00 41.85 3.16
443 444 0.734942 AATACGTCGTCGGGCTGTTG 60.735 55.000 0.00 0.00 41.85 3.33
444 445 2.552585 ATACGTCGTCGGGCTGTTGG 62.553 60.000 0.00 0.00 41.85 3.77
446 447 3.998672 GTCGTCGGGCTGTTGGGA 61.999 66.667 0.00 0.00 0.00 4.37
447 448 3.998672 TCGTCGGGCTGTTGGGAC 61.999 66.667 0.00 0.00 0.00 4.46
455 456 2.358737 CTGTTGGGACGGCTGGTC 60.359 66.667 0.00 0.00 45.31 4.02
456 457 2.847234 TGTTGGGACGGCTGGTCT 60.847 61.111 0.00 0.00 45.35 3.85
457 458 2.397413 CTGTTGGGACGGCTGGTCTT 62.397 60.000 0.00 0.00 45.35 3.01
458 459 1.228154 GTTGGGACGGCTGGTCTTT 60.228 57.895 0.00 0.00 45.35 2.52
459 460 1.072505 TTGGGACGGCTGGTCTTTC 59.927 57.895 0.00 0.00 45.35 2.62
460 461 1.701031 TTGGGACGGCTGGTCTTTCA 61.701 55.000 0.00 0.00 45.35 2.69
461 462 1.376037 GGGACGGCTGGTCTTTCAG 60.376 63.158 0.00 0.00 45.35 3.02
468 469 1.208614 CTGGTCTTTCAGCTTGCGC 59.791 57.895 0.00 0.00 0.00 6.09
469 470 2.192608 CTGGTCTTTCAGCTTGCGCC 62.193 60.000 4.18 0.00 36.60 6.53
470 471 2.260869 GGTCTTTCAGCTTGCGCCA 61.261 57.895 4.18 0.00 36.60 5.69
471 472 1.081840 GTCTTTCAGCTTGCGCCAC 60.082 57.895 4.18 0.00 36.60 5.01
472 473 2.127118 CTTTCAGCTTGCGCCACG 60.127 61.111 4.18 0.00 36.60 4.94
473 474 2.896801 CTTTCAGCTTGCGCCACGT 61.897 57.895 4.18 0.00 36.60 4.49
474 475 1.565156 CTTTCAGCTTGCGCCACGTA 61.565 55.000 4.18 0.00 36.60 3.57
475 476 1.837538 TTTCAGCTTGCGCCACGTAC 61.838 55.000 4.18 0.00 36.60 3.67
476 477 2.709125 TTCAGCTTGCGCCACGTACT 62.709 55.000 4.18 0.00 36.60 2.73
477 478 2.738521 AGCTTGCGCCACGTACTG 60.739 61.111 4.18 0.00 36.60 2.74
478 479 3.041940 GCTTGCGCCACGTACTGT 61.042 61.111 4.18 0.00 0.00 3.55
479 480 2.604174 GCTTGCGCCACGTACTGTT 61.604 57.895 4.18 0.00 0.00 3.16
480 481 1.491563 CTTGCGCCACGTACTGTTC 59.508 57.895 4.18 0.00 0.00 3.18
481 482 2.210524 CTTGCGCCACGTACTGTTCG 62.211 60.000 4.18 5.25 0.00 3.95
482 483 2.732094 GCGCCACGTACTGTTCGT 60.732 61.111 6.65 6.65 42.33 3.85
483 484 2.305127 GCGCCACGTACTGTTCGTT 61.305 57.895 9.79 0.00 39.55 3.85
484 485 1.003262 GCGCCACGTACTGTTCGTTA 61.003 55.000 9.79 0.00 39.55 3.18
485 486 0.704551 CGCCACGTACTGTTCGTTAC 59.295 55.000 9.79 4.61 39.55 2.50
486 487 1.063031 GCCACGTACTGTTCGTTACC 58.937 55.000 9.79 0.00 39.55 2.85
487 488 1.602668 GCCACGTACTGTTCGTTACCA 60.603 52.381 9.79 0.00 39.55 3.25
488 489 2.053627 CCACGTACTGTTCGTTACCAC 58.946 52.381 9.79 0.00 39.55 4.16
489 490 2.543445 CCACGTACTGTTCGTTACCACA 60.543 50.000 9.79 0.00 39.55 4.17
490 491 3.311106 CACGTACTGTTCGTTACCACAT 58.689 45.455 9.79 0.00 39.55 3.21
491 492 3.120616 CACGTACTGTTCGTTACCACATG 59.879 47.826 9.79 0.00 39.55 3.21
492 493 3.004629 ACGTACTGTTCGTTACCACATGA 59.995 43.478 6.65 0.00 38.38 3.07
493 494 4.171005 CGTACTGTTCGTTACCACATGAT 58.829 43.478 0.00 0.00 0.00 2.45
494 495 4.031314 CGTACTGTTCGTTACCACATGATG 59.969 45.833 0.00 0.00 0.00 3.07
495 496 4.002906 ACTGTTCGTTACCACATGATGT 57.997 40.909 0.00 0.00 0.00 3.06
496 497 5.142061 ACTGTTCGTTACCACATGATGTA 57.858 39.130 0.00 0.00 0.00 2.29
497 498 5.730550 ACTGTTCGTTACCACATGATGTAT 58.269 37.500 0.00 0.00 0.00 2.29
498 499 5.580691 ACTGTTCGTTACCACATGATGTATG 59.419 40.000 0.00 0.00 42.68 2.39
540 541 3.793797 TCGAGAGAAATGGAATACGCA 57.206 42.857 0.00 0.00 37.03 5.24
541 542 3.706698 TCGAGAGAAATGGAATACGCAG 58.293 45.455 0.00 0.00 37.03 5.18
542 543 2.797156 CGAGAGAAATGGAATACGCAGG 59.203 50.000 0.00 0.00 0.00 4.85
543 544 3.738281 CGAGAGAAATGGAATACGCAGGT 60.738 47.826 0.00 0.00 0.00 4.00
544 545 4.192317 GAGAGAAATGGAATACGCAGGTT 58.808 43.478 0.00 0.00 0.00 3.50
545 546 4.192317 AGAGAAATGGAATACGCAGGTTC 58.808 43.478 0.00 0.00 0.00 3.62
546 547 2.936498 AGAAATGGAATACGCAGGTTCG 59.064 45.455 0.00 0.00 0.00 3.95
547 548 2.684001 AATGGAATACGCAGGTTCGA 57.316 45.000 0.00 0.00 0.00 3.71
548 549 1.935933 ATGGAATACGCAGGTTCGAC 58.064 50.000 0.00 0.00 0.00 4.20
549 550 0.604073 TGGAATACGCAGGTTCGACA 59.396 50.000 0.00 0.00 0.00 4.35
550 551 1.001068 TGGAATACGCAGGTTCGACAA 59.999 47.619 0.00 0.00 0.00 3.18
551 552 1.392510 GGAATACGCAGGTTCGACAAC 59.607 52.381 0.00 0.00 0.00 3.32
552 553 1.058695 GAATACGCAGGTTCGACAACG 59.941 52.381 0.00 0.00 41.26 4.10
553 554 0.038892 ATACGCAGGTTCGACAACGT 60.039 50.000 0.00 0.00 40.69 3.99
554 555 0.248990 TACGCAGGTTCGACAACGTT 60.249 50.000 0.00 0.00 40.69 3.99
555 556 0.248990 ACGCAGGTTCGACAACGTTA 60.249 50.000 0.00 0.00 40.69 3.18
556 557 0.854062 CGCAGGTTCGACAACGTTAA 59.146 50.000 0.00 0.00 40.69 2.01
557 558 1.136721 CGCAGGTTCGACAACGTTAAG 60.137 52.381 0.00 0.00 40.69 1.85
558 559 1.193874 GCAGGTTCGACAACGTTAAGG 59.806 52.381 0.00 0.00 40.69 2.69
559 560 1.796459 CAGGTTCGACAACGTTAAGGG 59.204 52.381 0.00 0.00 40.69 3.95
560 561 0.514255 GGTTCGACAACGTTAAGGGC 59.486 55.000 0.00 0.00 40.69 5.19
561 562 0.514255 GTTCGACAACGTTAAGGGCC 59.486 55.000 0.00 0.00 40.69 5.80
562 563 0.393820 TTCGACAACGTTAAGGGCCT 59.606 50.000 0.00 0.00 40.69 5.19
563 564 0.037975 TCGACAACGTTAAGGGCCTC 60.038 55.000 6.46 0.00 40.69 4.70
564 565 0.037605 CGACAACGTTAAGGGCCTCT 60.038 55.000 6.46 0.00 34.56 3.69
565 566 1.439679 GACAACGTTAAGGGCCTCTG 58.560 55.000 6.46 0.00 0.00 3.35
566 567 1.001633 GACAACGTTAAGGGCCTCTGA 59.998 52.381 6.46 0.00 0.00 3.27
567 568 1.628846 ACAACGTTAAGGGCCTCTGAT 59.371 47.619 6.46 0.00 0.00 2.90
568 569 2.039879 ACAACGTTAAGGGCCTCTGATT 59.960 45.455 6.46 0.00 0.00 2.57
569 570 2.678336 CAACGTTAAGGGCCTCTGATTC 59.322 50.000 6.46 0.00 0.00 2.52
570 571 1.906574 ACGTTAAGGGCCTCTGATTCA 59.093 47.619 6.46 0.00 0.00 2.57
571 572 2.304761 ACGTTAAGGGCCTCTGATTCAA 59.695 45.455 6.46 0.00 0.00 2.69
572 573 3.244770 ACGTTAAGGGCCTCTGATTCAAA 60.245 43.478 6.46 0.00 0.00 2.69
573 574 3.375299 CGTTAAGGGCCTCTGATTCAAAG 59.625 47.826 6.46 0.00 0.00 2.77
574 575 2.521547 AAGGGCCTCTGATTCAAAGG 57.478 50.000 6.46 1.33 0.00 3.11
575 576 1.673767 AGGGCCTCTGATTCAAAGGA 58.326 50.000 10.33 0.00 31.44 3.36
576 577 2.212420 AGGGCCTCTGATTCAAAGGAT 58.788 47.619 10.33 0.00 31.44 3.24
577 578 2.584498 AGGGCCTCTGATTCAAAGGATT 59.416 45.455 10.33 0.00 31.44 3.01
578 579 3.012161 AGGGCCTCTGATTCAAAGGATTT 59.988 43.478 10.33 0.00 40.26 2.17
579 580 3.771479 GGGCCTCTGATTCAAAGGATTTT 59.229 43.478 10.33 0.00 35.03 1.82
580 581 4.142071 GGGCCTCTGATTCAAAGGATTTTC 60.142 45.833 10.33 0.00 35.03 2.29
581 582 4.463891 GGCCTCTGATTCAAAGGATTTTCA 59.536 41.667 10.33 0.00 35.03 2.69
582 583 5.128335 GGCCTCTGATTCAAAGGATTTTCAT 59.872 40.000 10.33 0.00 35.03 2.57
583 584 6.322201 GGCCTCTGATTCAAAGGATTTTCATA 59.678 38.462 10.33 0.00 35.03 2.15
584 585 7.199078 GCCTCTGATTCAAAGGATTTTCATAC 58.801 38.462 10.33 0.00 35.03 2.39
585 586 7.148018 GCCTCTGATTCAAAGGATTTTCATACA 60.148 37.037 10.33 0.00 35.03 2.29
586 587 8.742777 CCTCTGATTCAAAGGATTTTCATACAA 58.257 33.333 0.00 0.00 35.03 2.41
587 588 9.565213 CTCTGATTCAAAGGATTTTCATACAAC 57.435 33.333 0.00 0.00 35.03 3.32
588 589 8.522830 TCTGATTCAAAGGATTTTCATACAACC 58.477 33.333 0.00 0.00 35.03 3.77
589 590 8.421249 TGATTCAAAGGATTTTCATACAACCT 57.579 30.769 0.00 0.00 35.03 3.50
590 591 8.869109 TGATTCAAAGGATTTTCATACAACCTT 58.131 29.630 0.00 0.00 35.03 3.50
591 592 9.710900 GATTCAAAGGATTTTCATACAACCTTT 57.289 29.630 0.00 0.00 44.87 3.11
594 595 7.610580 AAAGGATTTTCATACAACCTTTGGA 57.389 32.000 0.00 0.00 43.20 3.53
595 596 6.840780 AGGATTTTCATACAACCTTTGGAG 57.159 37.500 0.00 0.00 34.12 3.86
596 597 6.314917 AGGATTTTCATACAACCTTTGGAGT 58.685 36.000 0.00 0.00 34.12 3.85
597 598 6.209391 AGGATTTTCATACAACCTTTGGAGTG 59.791 38.462 0.00 0.00 34.12 3.51
598 599 6.015434 GGATTTTCATACAACCTTTGGAGTGT 60.015 38.462 0.00 0.00 34.12 3.55
599 600 6.783708 TTTTCATACAACCTTTGGAGTGTT 57.216 33.333 0.00 0.00 34.12 3.32
600 601 5.766150 TTCATACAACCTTTGGAGTGTTG 57.234 39.130 0.00 0.00 43.76 3.33
601 602 4.141287 TCATACAACCTTTGGAGTGTTGG 58.859 43.478 6.56 0.00 42.75 3.77
602 603 2.818751 ACAACCTTTGGAGTGTTGGA 57.181 45.000 6.56 0.00 42.75 3.53
603 604 3.094484 ACAACCTTTGGAGTGTTGGAA 57.906 42.857 6.56 0.00 42.75 3.53
604 605 3.642141 ACAACCTTTGGAGTGTTGGAAT 58.358 40.909 6.56 0.00 42.75 3.01
605 606 3.636764 ACAACCTTTGGAGTGTTGGAATC 59.363 43.478 6.56 0.00 42.75 2.52
606 607 2.876581 ACCTTTGGAGTGTTGGAATCC 58.123 47.619 0.00 0.00 0.00 3.01
607 608 2.447047 ACCTTTGGAGTGTTGGAATCCT 59.553 45.455 0.00 0.00 34.04 3.24
608 609 3.117131 ACCTTTGGAGTGTTGGAATCCTT 60.117 43.478 0.00 0.00 34.04 3.36
609 610 4.105697 ACCTTTGGAGTGTTGGAATCCTTA 59.894 41.667 0.00 0.00 34.04 2.69
610 611 4.702131 CCTTTGGAGTGTTGGAATCCTTAG 59.298 45.833 0.00 0.00 34.04 2.18
611 612 5.514834 CCTTTGGAGTGTTGGAATCCTTAGA 60.515 44.000 0.00 0.00 34.04 2.10
612 613 5.576563 TTGGAGTGTTGGAATCCTTAGAA 57.423 39.130 0.00 0.00 34.04 2.10
613 614 5.779241 TGGAGTGTTGGAATCCTTAGAAT 57.221 39.130 0.00 0.00 34.04 2.40
614 615 6.139679 TGGAGTGTTGGAATCCTTAGAATT 57.860 37.500 0.00 0.00 34.04 2.17
615 616 6.552008 TGGAGTGTTGGAATCCTTAGAATTT 58.448 36.000 0.00 0.00 34.04 1.82
616 617 7.010160 TGGAGTGTTGGAATCCTTAGAATTTT 58.990 34.615 0.00 0.00 34.04 1.82
617 618 7.176690 TGGAGTGTTGGAATCCTTAGAATTTTC 59.823 37.037 0.00 0.00 34.04 2.29
618 619 7.363007 GGAGTGTTGGAATCCTTAGAATTTTCC 60.363 40.741 0.00 0.00 37.06 3.13
619 620 6.437477 AGTGTTGGAATCCTTAGAATTTTCCC 59.563 38.462 0.00 0.00 35.94 3.97
620 621 6.437477 GTGTTGGAATCCTTAGAATTTTCCCT 59.563 38.462 0.00 0.00 35.94 4.20
621 622 7.016296 TGTTGGAATCCTTAGAATTTTCCCTT 58.984 34.615 0.00 0.00 35.94 3.95
622 623 7.512402 TGTTGGAATCCTTAGAATTTTCCCTTT 59.488 33.333 0.00 0.00 35.94 3.11
623 624 7.480760 TGGAATCCTTAGAATTTTCCCTTTG 57.519 36.000 0.00 0.00 35.94 2.77
624 625 7.016296 TGGAATCCTTAGAATTTTCCCTTTGT 58.984 34.615 0.00 0.00 35.94 2.83
625 626 7.512402 TGGAATCCTTAGAATTTTCCCTTTGTT 59.488 33.333 0.00 0.00 35.94 2.83
626 627 7.819415 GGAATCCTTAGAATTTTCCCTTTGTTG 59.181 37.037 0.00 0.00 31.60 3.33
627 628 6.096673 TCCTTAGAATTTTCCCTTTGTTGC 57.903 37.500 0.00 0.00 0.00 4.17
628 629 5.011635 TCCTTAGAATTTTCCCTTTGTTGCC 59.988 40.000 0.00 0.00 0.00 4.52
629 630 5.012046 CCTTAGAATTTTCCCTTTGTTGCCT 59.988 40.000 0.00 0.00 0.00 4.75
630 631 4.341366 AGAATTTTCCCTTTGTTGCCTG 57.659 40.909 0.00 0.00 0.00 4.85
717 721 6.959639 AATTTTCTCAGAAAGCTACCAACA 57.040 33.333 0.00 0.00 0.00 3.33
725 729 0.107831 AAGCTACCAACAAGCGGTCA 59.892 50.000 0.00 0.00 44.87 4.02
760 764 0.682852 CCAAACCCGTGGTGACTAGA 59.317 55.000 0.00 0.00 35.34 2.43
925 969 3.073735 CGCTCACTCCCCTGCTCT 61.074 66.667 0.00 0.00 0.00 4.09
978 1059 4.065281 CCGTCTTCGAGGCCGGTT 62.065 66.667 9.04 0.00 39.71 4.44
1087 1209 6.195600 TGGGACTTATGGTAAGTTCTTTGT 57.804 37.500 7.80 0.00 0.00 2.83
1127 1273 2.557901 GGTGCTAGTAGGCCTAGGCTAT 60.558 54.545 32.18 22.87 42.43 2.97
1129 1275 2.291670 TGCTAGTAGGCCTAGGCTATCC 60.292 54.545 32.18 16.29 42.43 2.59
1199 1345 0.623723 TTGATTAGTGAGGGTGGGGC 59.376 55.000 0.00 0.00 0.00 5.80
1290 1441 8.372459 GGGGATTTTTAGTGTTCAGGTTTAATT 58.628 33.333 0.00 0.00 0.00 1.40
1291 1442 9.203421 GGGATTTTTAGTGTTCAGGTTTAATTG 57.797 33.333 0.00 0.00 0.00 2.32
1507 1667 1.306911 TATGGCTGCCCAGTCCAGA 60.307 57.895 17.53 8.82 46.24 3.86
1793 1997 2.158871 TGGTGTTGTAGAGTGGGTTGAC 60.159 50.000 0.00 0.00 0.00 3.18
1994 2201 3.815401 AGTACACCAAGCTTGTTGATGAC 59.185 43.478 28.30 20.72 0.00 3.06
2104 2324 4.331159 AGAAGGAGCTAGAGGAGAAAGT 57.669 45.455 0.00 0.00 0.00 2.66
2185 2405 4.942483 GCAGAGCCAAGCTAATATCATCAT 59.058 41.667 0.00 0.00 39.88 2.45
2303 2523 0.106519 ATGGGTATGGCAGCAAGGAC 60.107 55.000 0.00 0.00 0.00 3.85
2659 2999 3.412386 GCCAGTAGTCTGTGACCAAATT 58.588 45.455 0.00 0.00 39.82 1.82
2699 3059 3.848200 AACCCACCCCCTCCACCAT 62.848 63.158 0.00 0.00 0.00 3.55
2763 3558 3.977244 CAGCCGCCACCCACAAAC 61.977 66.667 0.00 0.00 0.00 2.93
2766 3561 4.596585 CCGCCACCCACAAACCCT 62.597 66.667 0.00 0.00 0.00 4.34
2767 3562 2.432563 CGCCACCCACAAACCCTA 59.567 61.111 0.00 0.00 0.00 3.53
2768 3563 1.674322 CGCCACCCACAAACCCTAG 60.674 63.158 0.00 0.00 0.00 3.02
2779 3575 3.455910 CACAAACCCTAGAGATGGATCCA 59.544 47.826 18.88 18.88 0.00 3.41
2855 3660 0.034476 TCCAGCAGCACAACAGAGAG 59.966 55.000 0.00 0.00 0.00 3.20
3071 3876 2.389715 CAGCTACTAGGGCTAAGTGGT 58.610 52.381 11.24 0.00 38.03 4.16
3097 3902 1.575244 TCTTCATGCGCTATGACTGC 58.425 50.000 18.10 0.00 45.22 4.40
3121 3962 6.295180 GCTCTGTCAATCTCATCTCATCCATA 60.295 42.308 0.00 0.00 0.00 2.74
3229 4115 8.752005 ATGTAATAACTGGTGTTTGATGCTAT 57.248 30.769 0.00 0.00 37.59 2.97
3286 4172 7.228108 ACTCTAAATGAATGTATGCTGTGGATG 59.772 37.037 0.00 0.00 0.00 3.51
3325 4211 7.819900 ACTGAATTAACTGACAGAAGATACACC 59.180 37.037 10.08 0.00 34.88 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.093496 GGTTCCCAATCCCGCTTACG 61.093 60.000 0.00 0.00 39.67 3.18
2 3 0.750546 GGGTTCCCAATCCCGCTTAC 60.751 60.000 2.59 0.00 33.97 2.34
4 5 2.359011 GGGTTCCCAATCCCGCTT 59.641 61.111 2.59 0.00 33.97 4.68
8 9 2.024176 AACAAAGGGTTCCCAATCCC 57.976 50.000 10.73 0.00 43.71 3.85
9 10 4.157246 AGTAAACAAAGGGTTCCCAATCC 58.843 43.478 10.73 0.00 39.29 3.01
10 11 4.830600 TGAGTAAACAAAGGGTTCCCAATC 59.169 41.667 10.73 0.00 39.29 2.67
11 12 4.587262 GTGAGTAAACAAAGGGTTCCCAAT 59.413 41.667 10.73 0.00 39.29 3.16
12 13 3.955551 GTGAGTAAACAAAGGGTTCCCAA 59.044 43.478 10.73 0.00 39.29 4.12
13 14 3.558033 GTGAGTAAACAAAGGGTTCCCA 58.442 45.455 10.73 0.00 39.29 4.37
14 15 2.889045 GGTGAGTAAACAAAGGGTTCCC 59.111 50.000 0.00 0.00 39.29 3.97
15 16 2.551032 CGGTGAGTAAACAAAGGGTTCC 59.449 50.000 0.00 0.00 39.29 3.62
16 17 2.551032 CCGGTGAGTAAACAAAGGGTTC 59.449 50.000 0.00 0.00 39.29 3.62
17 18 2.173143 TCCGGTGAGTAAACAAAGGGTT 59.827 45.455 0.00 0.00 42.98 4.11
18 19 1.770061 TCCGGTGAGTAAACAAAGGGT 59.230 47.619 0.00 0.00 0.00 4.34
19 20 2.554370 TCCGGTGAGTAAACAAAGGG 57.446 50.000 0.00 0.00 0.00 3.95
20 21 2.161609 GCATCCGGTGAGTAAACAAAGG 59.838 50.000 0.00 0.00 0.00 3.11
21 22 2.159707 CGCATCCGGTGAGTAAACAAAG 60.160 50.000 0.00 0.00 0.00 2.77
22 23 1.801771 CGCATCCGGTGAGTAAACAAA 59.198 47.619 0.00 0.00 0.00 2.83
23 24 1.434555 CGCATCCGGTGAGTAAACAA 58.565 50.000 0.00 0.00 0.00 2.83
24 25 1.017177 GCGCATCCGGTGAGTAAACA 61.017 55.000 0.30 0.00 34.32 2.83
25 26 1.702491 GGCGCATCCGGTGAGTAAAC 61.702 60.000 10.83 0.00 34.32 2.01
26 27 1.448893 GGCGCATCCGGTGAGTAAA 60.449 57.895 10.83 0.00 34.32 2.01
27 28 1.966901 ATGGCGCATCCGGTGAGTAA 61.967 55.000 10.83 0.00 37.80 2.24
28 29 1.110518 TATGGCGCATCCGGTGAGTA 61.111 55.000 10.83 0.00 37.80 2.59
29 30 1.758440 ATATGGCGCATCCGGTGAGT 61.758 55.000 10.83 0.00 37.80 3.41
30 31 0.603707 AATATGGCGCATCCGGTGAG 60.604 55.000 10.83 2.13 37.80 3.51
31 32 0.179032 AAATATGGCGCATCCGGTGA 60.179 50.000 10.83 0.00 37.80 4.02
32 33 0.667993 AAAATATGGCGCATCCGGTG 59.332 50.000 10.83 0.00 37.80 4.94
33 34 1.336755 GAAAAATATGGCGCATCCGGT 59.663 47.619 10.83 0.00 37.80 5.28
34 35 1.608590 AGAAAAATATGGCGCATCCGG 59.391 47.619 10.83 0.00 37.80 5.14
35 36 2.549754 AGAGAAAAATATGGCGCATCCG 59.450 45.455 10.83 0.00 37.80 4.18
36 37 4.293415 CAAGAGAAAAATATGGCGCATCC 58.707 43.478 10.83 0.00 0.00 3.51
37 38 3.732721 GCAAGAGAAAAATATGGCGCATC 59.267 43.478 10.83 0.00 0.00 3.91
38 39 3.709987 GCAAGAGAAAAATATGGCGCAT 58.290 40.909 10.83 3.40 0.00 4.73
39 40 2.477694 CGCAAGAGAAAAATATGGCGCA 60.478 45.455 10.83 0.00 43.02 6.09
40 41 2.111756 CGCAAGAGAAAAATATGGCGC 58.888 47.619 0.00 0.00 43.02 6.53
41 42 2.541588 CCCGCAAGAGAAAAATATGGCG 60.542 50.000 0.00 0.00 42.56 5.69
42 43 2.427095 ACCCGCAAGAGAAAAATATGGC 59.573 45.455 0.00 0.00 43.02 4.40
43 44 3.242739 CGACCCGCAAGAGAAAAATATGG 60.243 47.826 0.00 0.00 43.02 2.74
44 45 3.621268 TCGACCCGCAAGAGAAAAATATG 59.379 43.478 0.00 0.00 43.02 1.78
45 46 3.621715 GTCGACCCGCAAGAGAAAAATAT 59.378 43.478 3.51 0.00 43.02 1.28
46 47 2.997986 GTCGACCCGCAAGAGAAAAATA 59.002 45.455 3.51 0.00 43.02 1.40
47 48 1.804748 GTCGACCCGCAAGAGAAAAAT 59.195 47.619 3.51 0.00 43.02 1.82
48 49 1.223187 GTCGACCCGCAAGAGAAAAA 58.777 50.000 3.51 0.00 43.02 1.94
49 50 0.105224 TGTCGACCCGCAAGAGAAAA 59.895 50.000 14.12 0.00 43.02 2.29
50 51 0.319555 CTGTCGACCCGCAAGAGAAA 60.320 55.000 14.12 0.00 43.02 2.52
51 52 1.289066 CTGTCGACCCGCAAGAGAA 59.711 57.895 14.12 0.00 43.02 2.87
52 53 2.636412 CCTGTCGACCCGCAAGAGA 61.636 63.158 14.12 0.00 43.02 3.10
53 54 2.125912 CCTGTCGACCCGCAAGAG 60.126 66.667 14.12 1.16 43.02 2.85
54 55 4.373116 GCCTGTCGACCCGCAAGA 62.373 66.667 14.12 0.00 43.02 3.02
60 61 1.833787 TTAACCTGGCCTGTCGACCC 61.834 60.000 14.12 7.78 0.00 4.46
61 62 0.252197 ATTAACCTGGCCTGTCGACC 59.748 55.000 14.12 0.00 0.00 4.79
62 63 1.737793 CAATTAACCTGGCCTGTCGAC 59.262 52.381 9.11 9.11 0.00 4.20
63 64 1.339631 CCAATTAACCTGGCCTGTCGA 60.340 52.381 3.32 0.00 0.00 4.20
64 65 1.094785 CCAATTAACCTGGCCTGTCG 58.905 55.000 3.32 0.00 0.00 4.35
65 66 2.092323 GTCCAATTAACCTGGCCTGTC 58.908 52.381 3.32 0.00 33.63 3.51
66 67 1.613255 CGTCCAATTAACCTGGCCTGT 60.613 52.381 3.32 0.00 33.63 4.00
67 68 1.094785 CGTCCAATTAACCTGGCCTG 58.905 55.000 3.32 2.54 33.63 4.85
68 69 0.696501 ACGTCCAATTAACCTGGCCT 59.303 50.000 3.32 0.00 33.63 5.19
69 70 0.808755 CACGTCCAATTAACCTGGCC 59.191 55.000 0.00 0.00 33.63 5.36
70 71 0.808755 CCACGTCCAATTAACCTGGC 59.191 55.000 0.00 0.00 33.63 4.85
71 72 2.194201 ACCACGTCCAATTAACCTGG 57.806 50.000 0.00 0.00 35.05 4.45
72 73 3.930848 GACTACCACGTCCAATTAACCTG 59.069 47.826 0.00 0.00 0.00 4.00
73 74 3.579586 TGACTACCACGTCCAATTAACCT 59.420 43.478 0.00 0.00 32.97 3.50
74 75 3.929094 TGACTACCACGTCCAATTAACC 58.071 45.455 0.00 0.00 32.97 2.85
75 76 5.236911 TGTTTGACTACCACGTCCAATTAAC 59.763 40.000 0.00 0.00 32.97 2.01
76 77 5.366460 TGTTTGACTACCACGTCCAATTAA 58.634 37.500 0.00 0.00 32.97 1.40
77 78 4.958509 TGTTTGACTACCACGTCCAATTA 58.041 39.130 0.00 0.00 32.97 1.40
78 79 3.811083 TGTTTGACTACCACGTCCAATT 58.189 40.909 0.00 0.00 32.97 2.32
79 80 3.478857 TGTTTGACTACCACGTCCAAT 57.521 42.857 0.00 0.00 32.97 3.16
80 81 2.983907 TGTTTGACTACCACGTCCAA 57.016 45.000 0.00 0.00 32.97 3.53
81 82 3.612241 CGTATGTTTGACTACCACGTCCA 60.612 47.826 0.00 0.00 32.97 4.02
82 83 2.919229 CGTATGTTTGACTACCACGTCC 59.081 50.000 0.00 0.00 32.97 4.79
83 84 3.605486 GTCGTATGTTTGACTACCACGTC 59.395 47.826 0.00 0.00 32.37 4.34
84 85 3.254166 AGTCGTATGTTTGACTACCACGT 59.746 43.478 0.00 0.00 43.36 4.49
85 86 3.829948 AGTCGTATGTTTGACTACCACG 58.170 45.455 0.00 0.00 43.36 4.94
86 87 5.224888 TCAAGTCGTATGTTTGACTACCAC 58.775 41.667 0.00 0.00 44.36 4.16
87 88 5.456548 TCAAGTCGTATGTTTGACTACCA 57.543 39.130 0.00 0.00 44.36 3.25
385 386 0.673333 CATGGCCACGAACTGCACTA 60.673 55.000 8.16 0.00 0.00 2.74
386 387 1.968017 CATGGCCACGAACTGCACT 60.968 57.895 8.16 0.00 0.00 4.40
387 388 1.795170 AACATGGCCACGAACTGCAC 61.795 55.000 8.16 0.00 0.00 4.57
388 389 1.514678 GAACATGGCCACGAACTGCA 61.515 55.000 8.16 0.00 0.00 4.41
389 390 1.210155 GAACATGGCCACGAACTGC 59.790 57.895 8.16 0.00 0.00 4.40
390 391 1.197721 GAAGAACATGGCCACGAACTG 59.802 52.381 8.16 4.19 0.00 3.16
391 392 1.523758 GAAGAACATGGCCACGAACT 58.476 50.000 8.16 1.49 0.00 3.01
392 393 0.521735 GGAAGAACATGGCCACGAAC 59.478 55.000 8.16 0.00 0.00 3.95
393 394 0.109532 TGGAAGAACATGGCCACGAA 59.890 50.000 8.16 0.00 0.00 3.85
394 395 0.109532 TTGGAAGAACATGGCCACGA 59.890 50.000 8.16 0.00 0.00 4.35
395 396 0.240945 GTTGGAAGAACATGGCCACG 59.759 55.000 8.16 0.08 0.00 4.94
396 397 1.000274 GTGTTGGAAGAACATGGCCAC 60.000 52.381 8.16 0.00 32.23 5.01
397 398 1.327303 GTGTTGGAAGAACATGGCCA 58.673 50.000 8.56 8.56 32.23 5.36
398 399 0.240945 CGTGTTGGAAGAACATGGCC 59.759 55.000 0.00 0.00 34.43 5.36
399 400 0.951558 ACGTGTTGGAAGAACATGGC 59.048 50.000 10.62 0.00 40.48 4.40
400 401 3.399330 ACTACGTGTTGGAAGAACATGG 58.601 45.455 0.00 0.90 40.48 3.66
401 402 7.821595 TTATACTACGTGTTGGAAGAACATG 57.178 36.000 0.00 0.00 41.58 3.21
402 403 9.525409 GTATTATACTACGTGTTGGAAGAACAT 57.475 33.333 0.00 0.00 32.23 2.71
403 404 7.697710 CGTATTATACTACGTGTTGGAAGAACA 59.302 37.037 12.97 0.00 39.63 3.18
404 405 8.043570 CGTATTATACTACGTGTTGGAAGAAC 57.956 38.462 12.97 0.00 39.63 3.01
417 418 3.433615 AGCCCGACGACGTATTATACTAC 59.566 47.826 0.00 0.00 37.88 2.73
418 419 3.433274 CAGCCCGACGACGTATTATACTA 59.567 47.826 0.00 0.00 37.88 1.82
419 420 2.225019 CAGCCCGACGACGTATTATACT 59.775 50.000 0.00 0.00 37.88 2.12
420 421 2.031682 ACAGCCCGACGACGTATTATAC 60.032 50.000 0.00 0.00 37.88 1.47
421 422 2.221169 ACAGCCCGACGACGTATTATA 58.779 47.619 0.00 0.00 37.88 0.98
422 423 1.027357 ACAGCCCGACGACGTATTAT 58.973 50.000 0.00 0.00 37.88 1.28
423 424 0.810648 AACAGCCCGACGACGTATTA 59.189 50.000 0.00 0.00 37.88 0.98
424 425 0.734942 CAACAGCCCGACGACGTATT 60.735 55.000 0.00 0.00 37.88 1.89
425 426 1.153901 CAACAGCCCGACGACGTAT 60.154 57.895 0.00 0.00 37.88 3.06
426 427 2.256158 CAACAGCCCGACGACGTA 59.744 61.111 0.00 0.00 37.88 3.57
427 428 4.657824 CCAACAGCCCGACGACGT 62.658 66.667 0.00 0.00 37.88 4.34
429 430 3.998672 TCCCAACAGCCCGACGAC 61.999 66.667 0.00 0.00 0.00 4.34
430 431 3.998672 GTCCCAACAGCCCGACGA 61.999 66.667 0.00 0.00 0.00 4.20
437 438 4.643387 ACCAGCCGTCCCAACAGC 62.643 66.667 0.00 0.00 0.00 4.40
438 439 2.358737 GACCAGCCGTCCCAACAG 60.359 66.667 0.00 0.00 35.23 3.16
439 440 1.990160 AAAGACCAGCCGTCCCAACA 61.990 55.000 0.00 0.00 43.08 3.33
440 441 1.228154 AAAGACCAGCCGTCCCAAC 60.228 57.895 0.00 0.00 43.08 3.77
441 442 1.072505 GAAAGACCAGCCGTCCCAA 59.927 57.895 0.00 0.00 43.08 4.12
442 443 2.111999 CTGAAAGACCAGCCGTCCCA 62.112 60.000 0.00 0.00 43.08 4.37
443 444 1.376037 CTGAAAGACCAGCCGTCCC 60.376 63.158 0.00 0.00 43.08 4.46
444 445 4.285851 CTGAAAGACCAGCCGTCC 57.714 61.111 0.00 0.00 43.08 4.79
462 463 1.491563 GAACAGTACGTGGCGCAAG 59.508 57.895 10.83 1.38 43.44 4.01
463 464 2.304401 CGAACAGTACGTGGCGCAA 61.304 57.895 10.83 0.00 0.00 4.85
464 465 2.731721 CGAACAGTACGTGGCGCA 60.732 61.111 10.83 0.00 0.00 6.09
465 466 1.003262 TAACGAACAGTACGTGGCGC 61.003 55.000 0.00 0.00 43.16 6.53
466 467 0.704551 GTAACGAACAGTACGTGGCG 59.295 55.000 0.00 9.81 43.16 5.69
467 468 1.063031 GGTAACGAACAGTACGTGGC 58.937 55.000 0.00 0.00 43.16 5.01
468 469 2.053627 GTGGTAACGAACAGTACGTGG 58.946 52.381 0.00 0.00 43.16 4.94
469 470 2.730069 TGTGGTAACGAACAGTACGTG 58.270 47.619 0.00 0.00 43.16 4.49
470 471 3.004629 TCATGTGGTAACGAACAGTACGT 59.995 43.478 0.00 0.00 45.89 3.57
471 472 3.567530 TCATGTGGTAACGAACAGTACG 58.432 45.455 0.00 0.00 42.51 3.67
472 473 4.927425 ACATCATGTGGTAACGAACAGTAC 59.073 41.667 0.00 0.00 42.51 2.73
473 474 5.142061 ACATCATGTGGTAACGAACAGTA 57.858 39.130 0.00 0.00 42.51 2.74
474 475 4.002906 ACATCATGTGGTAACGAACAGT 57.997 40.909 0.00 0.00 42.51 3.55
475 476 5.580691 ACATACATCATGTGGTAACGAACAG 59.419 40.000 0.00 0.00 46.41 3.16
476 477 5.483811 ACATACATCATGTGGTAACGAACA 58.516 37.500 0.00 0.00 46.41 3.18
506 507 9.982291 CCATTTCTCTCGATTCGTTTTTATTAA 57.018 29.630 5.89 0.00 0.00 1.40
507 508 9.373603 TCCATTTCTCTCGATTCGTTTTTATTA 57.626 29.630 5.89 0.00 0.00 0.98
508 509 8.263940 TCCATTTCTCTCGATTCGTTTTTATT 57.736 30.769 5.89 0.00 0.00 1.40
509 510 7.843490 TCCATTTCTCTCGATTCGTTTTTAT 57.157 32.000 5.89 0.00 0.00 1.40
510 511 7.661127 TTCCATTTCTCTCGATTCGTTTTTA 57.339 32.000 5.89 0.00 0.00 1.52
511 512 6.554334 TTCCATTTCTCTCGATTCGTTTTT 57.446 33.333 5.89 0.00 0.00 1.94
512 513 6.743575 ATTCCATTTCTCTCGATTCGTTTT 57.256 33.333 5.89 0.00 0.00 2.43
513 514 6.019801 CGTATTCCATTTCTCTCGATTCGTTT 60.020 38.462 5.89 0.00 0.00 3.60
514 515 5.459107 CGTATTCCATTTCTCTCGATTCGTT 59.541 40.000 5.89 0.00 0.00 3.85
515 516 4.976731 CGTATTCCATTTCTCTCGATTCGT 59.023 41.667 5.89 0.00 0.00 3.85
516 517 4.143514 GCGTATTCCATTTCTCTCGATTCG 60.144 45.833 0.00 0.00 0.00 3.34
517 518 4.745125 TGCGTATTCCATTTCTCTCGATTC 59.255 41.667 0.00 0.00 0.00 2.52
518 519 4.693283 TGCGTATTCCATTTCTCTCGATT 58.307 39.130 0.00 0.00 0.00 3.34
519 520 4.302455 CTGCGTATTCCATTTCTCTCGAT 58.698 43.478 0.00 0.00 0.00 3.59
520 521 3.490933 CCTGCGTATTCCATTTCTCTCGA 60.491 47.826 0.00 0.00 0.00 4.04
521 522 2.797156 CCTGCGTATTCCATTTCTCTCG 59.203 50.000 0.00 0.00 0.00 4.04
522 523 3.798202 ACCTGCGTATTCCATTTCTCTC 58.202 45.455 0.00 0.00 0.00 3.20
523 524 3.914426 ACCTGCGTATTCCATTTCTCT 57.086 42.857 0.00 0.00 0.00 3.10
524 525 3.001330 CGAACCTGCGTATTCCATTTCTC 59.999 47.826 0.00 0.00 0.00 2.87
525 526 2.936498 CGAACCTGCGTATTCCATTTCT 59.064 45.455 0.00 0.00 0.00 2.52
526 527 2.933906 TCGAACCTGCGTATTCCATTTC 59.066 45.455 0.00 0.00 0.00 2.17
527 528 2.676342 GTCGAACCTGCGTATTCCATTT 59.324 45.455 0.00 0.00 0.00 2.32
528 529 2.277084 GTCGAACCTGCGTATTCCATT 58.723 47.619 0.00 0.00 0.00 3.16
529 530 1.206132 TGTCGAACCTGCGTATTCCAT 59.794 47.619 0.00 0.00 0.00 3.41
530 531 0.604073 TGTCGAACCTGCGTATTCCA 59.396 50.000 0.00 0.00 0.00 3.53
531 532 1.392510 GTTGTCGAACCTGCGTATTCC 59.607 52.381 0.00 0.00 0.00 3.01
532 533 1.058695 CGTTGTCGAACCTGCGTATTC 59.941 52.381 0.00 0.00 39.71 1.75
533 534 1.065358 CGTTGTCGAACCTGCGTATT 58.935 50.000 0.00 0.00 39.71 1.89
534 535 0.038892 ACGTTGTCGAACCTGCGTAT 60.039 50.000 0.00 0.00 40.62 3.06
535 536 0.248990 AACGTTGTCGAACCTGCGTA 60.249 50.000 0.00 0.00 40.62 4.42
536 537 0.248990 TAACGTTGTCGAACCTGCGT 60.249 50.000 11.99 0.00 40.62 5.24
537 538 0.854062 TTAACGTTGTCGAACCTGCG 59.146 50.000 11.99 0.00 40.62 5.18
538 539 1.193874 CCTTAACGTTGTCGAACCTGC 59.806 52.381 11.99 0.00 40.62 4.85
539 540 1.796459 CCCTTAACGTTGTCGAACCTG 59.204 52.381 11.99 0.00 40.62 4.00
540 541 1.875157 GCCCTTAACGTTGTCGAACCT 60.875 52.381 11.99 0.00 40.62 3.50
541 542 0.514255 GCCCTTAACGTTGTCGAACC 59.486 55.000 11.99 0.00 40.62 3.62
542 543 0.514255 GGCCCTTAACGTTGTCGAAC 59.486 55.000 11.99 0.00 40.62 3.95
543 544 0.393820 AGGCCCTTAACGTTGTCGAA 59.606 50.000 11.99 0.00 40.62 3.71
544 545 0.037975 GAGGCCCTTAACGTTGTCGA 60.038 55.000 11.99 0.00 40.62 4.20
545 546 0.037605 AGAGGCCCTTAACGTTGTCG 60.038 55.000 11.99 0.00 43.34 4.35
546 547 1.001633 TCAGAGGCCCTTAACGTTGTC 59.998 52.381 11.99 0.00 0.00 3.18
547 548 1.053424 TCAGAGGCCCTTAACGTTGT 58.947 50.000 11.99 0.00 0.00 3.32
548 549 2.403252 ATCAGAGGCCCTTAACGTTG 57.597 50.000 11.99 0.00 0.00 4.10
549 550 2.304761 TGAATCAGAGGCCCTTAACGTT 59.695 45.455 5.88 5.88 0.00 3.99
550 551 1.906574 TGAATCAGAGGCCCTTAACGT 59.093 47.619 0.00 0.00 0.00 3.99
551 552 2.691409 TGAATCAGAGGCCCTTAACG 57.309 50.000 0.00 0.00 0.00 3.18
552 553 3.696548 CCTTTGAATCAGAGGCCCTTAAC 59.303 47.826 6.90 0.00 29.13 2.01
553 554 3.591527 TCCTTTGAATCAGAGGCCCTTAA 59.408 43.478 14.39 0.00 35.94 1.85
554 555 3.189606 TCCTTTGAATCAGAGGCCCTTA 58.810 45.455 14.39 0.00 35.94 2.69
555 556 1.995542 TCCTTTGAATCAGAGGCCCTT 59.004 47.619 14.39 0.00 35.94 3.95
556 557 1.673767 TCCTTTGAATCAGAGGCCCT 58.326 50.000 14.39 0.00 35.94 5.19
557 558 2.744352 ATCCTTTGAATCAGAGGCCC 57.256 50.000 14.39 0.00 35.94 5.80
558 559 4.463891 TGAAAATCCTTTGAATCAGAGGCC 59.536 41.667 14.39 0.00 35.94 5.19
559 560 5.649782 TGAAAATCCTTTGAATCAGAGGC 57.350 39.130 14.39 1.78 35.94 4.70
560 561 8.284945 TGTATGAAAATCCTTTGAATCAGAGG 57.715 34.615 13.16 13.16 37.12 3.69
561 562 9.565213 GTTGTATGAAAATCCTTTGAATCAGAG 57.435 33.333 0.00 0.00 0.00 3.35
562 563 8.522830 GGTTGTATGAAAATCCTTTGAATCAGA 58.477 33.333 0.00 0.00 0.00 3.27
563 564 8.526147 AGGTTGTATGAAAATCCTTTGAATCAG 58.474 33.333 0.00 0.00 0.00 2.90
564 565 8.421249 AGGTTGTATGAAAATCCTTTGAATCA 57.579 30.769 0.00 0.00 0.00 2.57
565 566 9.710900 AAAGGTTGTATGAAAATCCTTTGAATC 57.289 29.630 6.26 0.00 41.65 2.52
570 571 7.290014 ACTCCAAAGGTTGTATGAAAATCCTTT 59.710 33.333 0.00 0.00 43.24 3.11
571 572 6.782494 ACTCCAAAGGTTGTATGAAAATCCTT 59.218 34.615 0.00 0.00 36.95 3.36
572 573 6.209391 CACTCCAAAGGTTGTATGAAAATCCT 59.791 38.462 0.00 0.00 0.00 3.24
573 574 6.015434 ACACTCCAAAGGTTGTATGAAAATCC 60.015 38.462 0.00 0.00 0.00 3.01
574 575 6.981722 ACACTCCAAAGGTTGTATGAAAATC 58.018 36.000 0.00 0.00 0.00 2.17
575 576 6.976934 ACACTCCAAAGGTTGTATGAAAAT 57.023 33.333 0.00 0.00 0.00 1.82
576 577 6.406400 CCAACACTCCAAAGGTTGTATGAAAA 60.406 38.462 0.00 0.00 40.10 2.29
577 578 5.068460 CCAACACTCCAAAGGTTGTATGAAA 59.932 40.000 0.00 0.00 40.10 2.69
578 579 4.582656 CCAACACTCCAAAGGTTGTATGAA 59.417 41.667 0.00 0.00 40.10 2.57
579 580 4.141287 CCAACACTCCAAAGGTTGTATGA 58.859 43.478 0.00 0.00 40.10 2.15
580 581 4.141287 TCCAACACTCCAAAGGTTGTATG 58.859 43.478 0.00 0.00 40.10 2.39
581 582 4.447138 TCCAACACTCCAAAGGTTGTAT 57.553 40.909 0.00 0.00 40.10 2.29
582 583 3.935818 TCCAACACTCCAAAGGTTGTA 57.064 42.857 0.00 0.00 40.10 2.41
583 584 2.818751 TCCAACACTCCAAAGGTTGT 57.181 45.000 0.00 0.00 40.10 3.32
584 585 3.005791 GGATTCCAACACTCCAAAGGTTG 59.994 47.826 0.00 0.00 41.10 3.77
585 586 3.117131 AGGATTCCAACACTCCAAAGGTT 60.117 43.478 5.29 0.00 0.00 3.50
586 587 2.447047 AGGATTCCAACACTCCAAAGGT 59.553 45.455 5.29 0.00 0.00 3.50
587 588 3.160679 AGGATTCCAACACTCCAAAGG 57.839 47.619 5.29 0.00 0.00 3.11
588 589 5.560724 TCTAAGGATTCCAACACTCCAAAG 58.439 41.667 5.29 0.00 0.00 2.77
589 590 5.576563 TCTAAGGATTCCAACACTCCAAA 57.423 39.130 5.29 0.00 0.00 3.28
590 591 5.576563 TTCTAAGGATTCCAACACTCCAA 57.423 39.130 5.29 0.00 0.00 3.53
591 592 5.779241 ATTCTAAGGATTCCAACACTCCA 57.221 39.130 5.29 0.00 0.00 3.86
592 593 7.363007 GGAAAATTCTAAGGATTCCAACACTCC 60.363 40.741 5.29 0.00 39.45 3.85
593 594 7.363007 GGGAAAATTCTAAGGATTCCAACACTC 60.363 40.741 5.29 0.00 41.03 3.51
594 595 6.437477 GGGAAAATTCTAAGGATTCCAACACT 59.563 38.462 5.29 0.00 41.03 3.55
595 596 6.437477 AGGGAAAATTCTAAGGATTCCAACAC 59.563 38.462 5.29 0.00 41.03 3.32
596 597 6.561294 AGGGAAAATTCTAAGGATTCCAACA 58.439 36.000 5.29 0.00 41.03 3.33
597 598 7.482169 AAGGGAAAATTCTAAGGATTCCAAC 57.518 36.000 5.29 0.00 41.03 3.77
598 599 7.512402 ACAAAGGGAAAATTCTAAGGATTCCAA 59.488 33.333 5.29 0.00 41.03 3.53
599 600 7.016296 ACAAAGGGAAAATTCTAAGGATTCCA 58.984 34.615 5.29 0.00 41.03 3.53
600 601 7.482169 ACAAAGGGAAAATTCTAAGGATTCC 57.518 36.000 0.00 0.00 39.03 3.01
601 602 7.331934 GCAACAAAGGGAAAATTCTAAGGATTC 59.668 37.037 0.00 0.00 0.00 2.52
602 603 7.161404 GCAACAAAGGGAAAATTCTAAGGATT 58.839 34.615 0.00 0.00 0.00 3.01
603 604 6.295859 GGCAACAAAGGGAAAATTCTAAGGAT 60.296 38.462 0.00 0.00 0.00 3.24
604 605 5.011635 GGCAACAAAGGGAAAATTCTAAGGA 59.988 40.000 0.00 0.00 0.00 3.36
605 606 5.012046 AGGCAACAAAGGGAAAATTCTAAGG 59.988 40.000 0.00 0.00 41.41 2.69
606 607 5.928264 CAGGCAACAAAGGGAAAATTCTAAG 59.072 40.000 0.00 0.00 41.41 2.18
607 608 5.365314 ACAGGCAACAAAGGGAAAATTCTAA 59.635 36.000 0.00 0.00 41.41 2.10
608 609 4.898861 ACAGGCAACAAAGGGAAAATTCTA 59.101 37.500 0.00 0.00 41.41 2.10
609 610 3.711190 ACAGGCAACAAAGGGAAAATTCT 59.289 39.130 0.00 0.00 41.41 2.40
610 611 4.071961 ACAGGCAACAAAGGGAAAATTC 57.928 40.909 0.00 0.00 41.41 2.17
611 612 4.080638 TCAACAGGCAACAAAGGGAAAATT 60.081 37.500 0.00 0.00 41.41 1.82
612 613 3.454082 TCAACAGGCAACAAAGGGAAAAT 59.546 39.130 0.00 0.00 41.41 1.82
613 614 2.834549 TCAACAGGCAACAAAGGGAAAA 59.165 40.909 0.00 0.00 41.41 2.29
614 615 2.430332 CTCAACAGGCAACAAAGGGAAA 59.570 45.455 0.00 0.00 41.41 3.13
615 616 2.031120 CTCAACAGGCAACAAAGGGAA 58.969 47.619 0.00 0.00 41.41 3.97
616 617 1.064017 ACTCAACAGGCAACAAAGGGA 60.064 47.619 0.00 0.00 41.41 4.20
617 618 1.402787 ACTCAACAGGCAACAAAGGG 58.597 50.000 0.00 0.00 41.41 3.95
618 619 4.647424 TTTACTCAACAGGCAACAAAGG 57.353 40.909 0.00 0.00 41.41 3.11
619 620 5.858581 GCTATTTACTCAACAGGCAACAAAG 59.141 40.000 0.00 0.00 41.41 2.77
620 621 5.300539 TGCTATTTACTCAACAGGCAACAAA 59.699 36.000 0.00 0.00 41.41 2.83
621 622 4.824537 TGCTATTTACTCAACAGGCAACAA 59.175 37.500 0.00 0.00 41.41 2.83
622 623 4.393834 TGCTATTTACTCAACAGGCAACA 58.606 39.130 0.00 0.00 41.41 3.33
623 624 5.567138 ATGCTATTTACTCAACAGGCAAC 57.433 39.130 0.00 0.00 32.28 4.17
624 625 7.695480 TTTATGCTATTTACTCAACAGGCAA 57.305 32.000 0.00 0.00 32.28 4.52
625 626 7.393234 AGTTTTATGCTATTTACTCAACAGGCA 59.607 33.333 0.00 0.00 0.00 4.75
626 627 7.762382 AGTTTTATGCTATTTACTCAACAGGC 58.238 34.615 0.00 0.00 0.00 4.85
750 754 5.733620 AACGGTTAAATCTCTAGTCACCA 57.266 39.130 0.00 0.00 0.00 4.17
978 1059 4.373116 GCAAGGAGGTCGACGGCA 62.373 66.667 9.92 0.00 0.00 5.69
1087 1209 2.661593 ACCTAACCCTAACCCTAGGTGA 59.338 50.000 8.29 0.00 43.08 4.02
1129 1275 1.064906 ACACTCAGCAAGATCCATGGG 60.065 52.381 13.02 0.00 0.00 4.00
1199 1345 6.653989 AGGTTACCTCAATCCTACAATCAAG 58.346 40.000 0.00 0.00 0.00 3.02
1290 1441 2.880268 CCAGAATCAACTTGCACTGTCA 59.120 45.455 0.00 0.00 0.00 3.58
1291 1442 2.880890 ACCAGAATCAACTTGCACTGTC 59.119 45.455 0.00 0.00 0.00 3.51
1484 1644 1.340991 GGACTGGGCAGCCATAGAAAA 60.341 52.381 15.19 0.00 0.00 2.29
1507 1667 8.071177 AGCAGAAAACTTAATTGGCATCTAAT 57.929 30.769 0.00 0.00 0.00 1.73
1808 2012 3.248363 TGCACAAACATCTCTGAAGAACG 59.752 43.478 0.00 0.00 34.49 3.95
1994 2201 4.096231 TGCCAATCAAACATCTTGGATACG 59.904 41.667 4.79 0.00 41.61 3.06
2104 2324 2.575735 TCCATCTGCACCTCCAACATAA 59.424 45.455 0.00 0.00 0.00 1.90
2185 2405 4.326826 CTTCATAGCCTTCTTGGTGTTCA 58.673 43.478 0.00 0.00 38.35 3.18
2270 2490 0.392193 ACCCATCTTTCAGCAGCTCG 60.392 55.000 0.00 0.00 0.00 5.03
2303 2523 3.507233 TGGCCTTGATTTGCTCTAACTTG 59.493 43.478 3.32 0.00 0.00 3.16
2565 2815 6.808321 TTAATAGAGACTACTGGCCAACAT 57.192 37.500 7.01 0.00 0.00 2.71
2659 2999 7.389232 GGTTTTAGTAGGCCTAAGTCAGTTTA 58.611 38.462 15.83 0.00 36.98 2.01
2699 3059 3.859248 TGGGGAGGGGTTTATATTGACAA 59.141 43.478 0.00 0.00 0.00 3.18
2763 3558 3.251016 TGTCTGGATCCATCTCTAGGG 57.749 52.381 16.63 0.36 0.00 3.53
2764 3559 3.514706 CCATGTCTGGATCCATCTCTAGG 59.485 52.174 16.63 9.69 46.37 3.02
2766 3561 4.475919 TCCATGTCTGGATCCATCTCTA 57.524 45.455 16.63 0.73 46.95 2.43
2767 3562 3.341318 TCCATGTCTGGATCCATCTCT 57.659 47.619 16.63 0.00 46.95 3.10
2779 3575 2.485659 ACATCTCCCATGTCCATGTCT 58.514 47.619 6.53 0.00 37.11 3.41
2855 3660 4.154347 CTGTCTGCGCCTCCTCCC 62.154 72.222 4.18 0.00 0.00 4.30
2939 3744 0.317160 TCATCGTTGCACTTCTCCGT 59.683 50.000 0.00 0.00 0.00 4.69
2940 3745 1.391485 CTTCATCGTTGCACTTCTCCG 59.609 52.381 0.00 0.00 0.00 4.63
3071 3876 2.073117 TAGCGCATGAAGAAACGACA 57.927 45.000 11.47 0.00 0.00 4.35
3097 3902 5.532664 TGGATGAGATGAGATTGACAGAG 57.467 43.478 0.00 0.00 0.00 3.35
3132 3973 9.753674 ACCAAGATAGAAAGATAGATAGAGAGG 57.246 37.037 0.00 0.00 0.00 3.69
3286 4172 8.988934 TCAGTTAATTCAGTCAGTACATTTCAC 58.011 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.