Multiple sequence alignment - TraesCS1D01G244600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G244600 chr1D 100.000 2564 0 0 1 2564 335354398 335356961 0.000000e+00 4735.0
1 TraesCS1D01G244600 chr6B 80.479 2546 433 44 7 2541 715088109 715090601 0.000000e+00 1890.0
2 TraesCS1D01G244600 chr6D 82.122 1018 172 9 7 1017 468617101 468616087 0.000000e+00 863.0
3 TraesCS1D01G244600 chr6D 81.319 91 15 2 11 101 375411172 375411260 3.540000e-09 73.1
4 TraesCS1D01G244600 chr2A 93.122 189 12 1 603 790 766828973 766829161 2.510000e-70 276.0
5 TraesCS1D01G244600 chr5A 78.509 228 44 2 7 233 308233020 308232797 7.390000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G244600 chr1D 335354398 335356961 2563 False 4735 4735 100.000 1 2564 1 chr1D.!!$F1 2563
1 TraesCS1D01G244600 chr6B 715088109 715090601 2492 False 1890 1890 80.479 7 2541 1 chr6B.!!$F1 2534
2 TraesCS1D01G244600 chr6D 468616087 468617101 1014 True 863 863 82.122 7 1017 1 chr6D.!!$R1 1010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 889 0.031449 GGCTCCTAGCGCTGAACTAG 59.969 60.0 22.9 8.9 43.62 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 1897 0.043566 CGAGCGAGCGATCAATGTTG 60.044 55.0 8.89 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.750546 TCCTGTCGTACCCGATCCTG 60.751 60.000 0.00 0.00 46.30 3.86
75 76 2.731571 TACCCGATCCTGCTGCACC 61.732 63.158 0.00 0.00 0.00 5.01
160 161 2.831742 CGGCATCCCAAGCAGCAT 60.832 61.111 0.00 0.00 0.00 3.79
236 237 2.971598 CGAGGACAACCCCAGGCAT 61.972 63.158 0.00 0.00 36.73 4.40
238 239 1.542375 AGGACAACCCCAGGCATCT 60.542 57.895 0.00 0.00 36.73 2.90
296 297 3.518998 CGCGACCACTCTCCGGAT 61.519 66.667 3.57 0.00 0.00 4.18
297 298 2.105128 GCGACCACTCTCCGGATG 59.895 66.667 3.57 0.00 0.00 3.51
306 307 1.332195 CTCTCCGGATGATGGTGCTA 58.668 55.000 3.57 0.00 0.00 3.49
347 348 3.490759 CATGCACCTCGTCGCACC 61.491 66.667 0.00 0.00 41.79 5.01
348 349 4.760047 ATGCACCTCGTCGCACCC 62.760 66.667 0.00 0.00 41.79 4.61
351 352 4.436998 CACCTCGTCGCACCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
373 374 2.359602 TGCTGGCTCTGCTGCTTC 60.360 61.111 0.00 0.00 0.00 3.86
375 376 3.497932 CTGGCTCTGCTGCTTCGC 61.498 66.667 0.00 0.01 0.00 4.70
376 377 3.954465 CTGGCTCTGCTGCTTCGCT 62.954 63.158 0.00 0.00 0.00 4.93
384 385 2.507992 CTGCTTCGCTCGGTGGAG 60.508 66.667 0.00 0.00 43.46 3.86
447 448 4.759096 GGCGCCGTCAACATGCAC 62.759 66.667 12.58 0.00 0.00 4.57
457 461 0.320683 CAACATGCACCCTCTCACGA 60.321 55.000 0.00 0.00 0.00 4.35
463 467 1.658114 CACCCTCTCACGACGTCAA 59.342 57.895 17.16 0.00 0.00 3.18
466 470 1.442184 CCTCTCACGACGTCAACGG 60.442 63.158 17.16 1.08 44.95 4.44
477 481 3.418913 TCAACGGCGCCATTGACG 61.419 61.111 32.31 16.64 29.89 4.35
481 485 4.812476 CGGCGCCATTGACGGAGA 62.812 66.667 28.98 0.00 0.00 3.71
482 486 2.892425 GGCGCCATTGACGGAGAG 60.892 66.667 24.80 0.00 0.00 3.20
485 489 1.813859 CGCCATTGACGGAGAGGTA 59.186 57.895 0.00 0.00 0.00 3.08
494 498 2.493501 GGAGAGGTAACGGCGTCC 59.506 66.667 15.17 11.92 46.39 4.79
500 504 2.507769 GTAACGGCGTCCCCTTCG 60.508 66.667 15.17 0.00 0.00 3.79
506 510 4.790861 GCGTCCCCTTCGTCCGTC 62.791 72.222 0.00 0.00 0.00 4.79
507 511 4.471726 CGTCCCCTTCGTCCGTCG 62.472 72.222 0.00 0.00 41.41 5.12
525 529 3.003173 CCGCTCCCCCAGTCTTGA 61.003 66.667 0.00 0.00 0.00 3.02
551 555 4.090057 GCCAACGCGTTGCCTCTC 62.090 66.667 39.42 22.97 39.16 3.20
554 558 3.626924 AACGCGTTGCCTCTCCCT 61.627 61.111 26.00 0.00 0.00 4.20
574 578 2.032528 CTTGGAGAGCACGGCCAA 59.967 61.111 2.24 10.11 39.23 4.52
575 579 2.281484 TTGGAGAGCACGGCCAAC 60.281 61.111 2.24 0.00 36.80 3.77
648 652 3.071206 GCTCCCTGCCTGTCTCGA 61.071 66.667 0.00 0.00 35.15 4.04
650 654 3.071206 TCCCTGCCTGTCTCGAGC 61.071 66.667 7.81 3.58 0.00 5.03
653 657 3.385384 CTGCCTGTCTCGAGCCCA 61.385 66.667 7.81 6.00 0.00 5.36
656 660 3.385384 CCTGTCTCGAGCCCAGCA 61.385 66.667 20.33 8.95 0.00 4.41
672 676 4.711949 CACCGCTTCTGCCTGCCT 62.712 66.667 0.00 0.00 35.36 4.75
674 678 3.130160 CCGCTTCTGCCTGCCTTC 61.130 66.667 0.00 0.00 35.36 3.46
679 683 1.539869 TTCTGCCTGCCTTCCCTCT 60.540 57.895 0.00 0.00 0.00 3.69
681 685 3.011517 TGCCTGCCTTCCCTCTCC 61.012 66.667 0.00 0.00 0.00 3.71
684 688 2.588989 CTGCCTTCCCTCTCCTGC 59.411 66.667 0.00 0.00 0.00 4.85
691 695 3.465403 CCCTCTCCTGCAGTCCGG 61.465 72.222 13.81 7.24 0.00 5.14
693 697 3.073735 CTCTCCTGCAGTCCGGCT 61.074 66.667 13.81 0.00 34.04 5.52
694 698 2.604686 TCTCCTGCAGTCCGGCTT 60.605 61.111 13.81 0.00 34.04 4.35
698 702 2.979676 CTGCAGTCCGGCTTGCAA 60.980 61.111 25.86 14.34 36.81 4.08
699 703 3.259425 CTGCAGTCCGGCTTGCAAC 62.259 63.158 25.86 7.30 36.81 4.17
706 710 1.040339 TCCGGCTTGCAACCTTTTGT 61.040 50.000 13.76 0.00 34.90 2.83
717 721 1.130777 ACCTTTTGTTGCCATGGCTT 58.869 45.000 35.53 7.33 42.51 4.35
737 741 1.196012 CTACGCCTCCTTCCCTTTCT 58.804 55.000 0.00 0.00 0.00 2.52
760 764 0.391130 CAACCTACGCCTGCTTGCTA 60.391 55.000 0.00 0.00 0.00 3.49
762 766 0.179073 ACCTACGCCTGCTTGCTATG 60.179 55.000 0.00 0.00 0.00 2.23
763 767 1.502163 CCTACGCCTGCTTGCTATGC 61.502 60.000 0.00 0.00 0.00 3.14
768 772 3.589881 CTGCTTGCTATGCCGCCC 61.590 66.667 0.00 0.00 0.00 6.13
807 812 4.749310 CCTCGCTGTCGCTGCCTT 62.749 66.667 0.00 0.00 35.26 4.35
820 825 4.982701 GCCTTGCCCCACACTGCT 62.983 66.667 0.00 0.00 0.00 4.24
825 830 4.648626 GCCCCACACTGCTGCTGA 62.649 66.667 13.69 0.00 0.00 4.26
829 834 2.479198 CACACTGCTGCTGATGCG 59.521 61.111 13.69 1.74 43.34 4.73
832 837 2.435586 ACTGCTGCTGATGCGGTC 60.436 61.111 13.69 0.00 45.76 4.79
858 863 4.426112 CACGCTGCCGCTCTCTCA 62.426 66.667 0.00 0.00 38.22 3.27
860 865 2.121538 ACGCTGCCGCTCTCTCATA 61.122 57.895 0.00 0.00 38.22 2.15
862 867 1.439228 GCTGCCGCTCTCTCATACA 59.561 57.895 0.00 0.00 0.00 2.29
869 874 2.402305 CGCTCTCTCATACATTGGCTC 58.598 52.381 0.00 0.00 0.00 4.70
871 876 2.368221 GCTCTCTCATACATTGGCTCCT 59.632 50.000 0.00 0.00 0.00 3.69
874 879 3.576118 TCTCTCATACATTGGCTCCTAGC 59.424 47.826 0.00 0.00 41.46 3.42
877 882 1.051812 ATACATTGGCTCCTAGCGCT 58.948 50.000 17.26 17.26 43.62 5.92
880 885 0.462581 CATTGGCTCCTAGCGCTGAA 60.463 55.000 22.90 0.00 43.62 3.02
882 887 1.544825 TTGGCTCCTAGCGCTGAACT 61.545 55.000 22.90 0.00 43.62 3.01
884 889 0.031449 GGCTCCTAGCGCTGAACTAG 59.969 60.000 22.90 8.90 43.62 2.57
902 907 2.346365 CTGCTGCTGACTGCTCCA 59.654 61.111 0.00 2.30 43.37 3.86
921 926 4.166888 GCATCTGCTCGGCCAGGA 62.167 66.667 2.24 0.00 38.21 3.86
922 927 2.586245 CATCTGCTCGGCCAGGAA 59.414 61.111 2.24 0.00 33.64 3.36
924 929 3.397613 ATCTGCTCGGCCAGGAAGC 62.398 63.158 2.24 6.51 33.64 3.86
929 934 2.922503 TCGGCCAGGAAGCTGACA 60.923 61.111 2.24 0.00 43.22 3.58
934 939 1.294659 GCCAGGAAGCTGACAACTCG 61.295 60.000 0.00 0.00 0.00 4.18
940 945 0.679505 AAGCTGACAACTCGCTGGTA 59.320 50.000 0.00 0.00 33.64 3.25
942 947 1.070134 AGCTGACAACTCGCTGGTAAA 59.930 47.619 0.00 0.00 31.82 2.01
945 950 1.154197 GACAACTCGCTGGTAAACCC 58.846 55.000 0.00 0.00 34.29 4.11
948 953 0.763035 AACTCGCTGGTAAACCCTGT 59.237 50.000 0.00 0.00 34.73 4.00
949 954 0.763035 ACTCGCTGGTAAACCCTGTT 59.237 50.000 0.00 0.00 34.73 3.16
950 955 1.270678 ACTCGCTGGTAAACCCTGTTC 60.271 52.381 0.00 0.00 34.73 3.18
953 958 0.958876 GCTGGTAAACCCTGTTCCCG 60.959 60.000 0.00 0.00 34.73 5.14
957 962 0.251033 GTAAACCCTGTTCCCGGCTT 60.251 55.000 0.00 0.00 0.00 4.35
959 964 2.002018 AAACCCTGTTCCCGGCTTCA 62.002 55.000 0.00 0.00 0.00 3.02
963 968 1.315257 CCTGTTCCCGGCTTCATTGG 61.315 60.000 0.00 0.00 0.00 3.16
966 971 2.235028 TTCCCGGCTTCATTGGGGA 61.235 57.895 0.00 0.00 46.81 4.81
969 974 3.508840 CGGCTTCATTGGGGACGC 61.509 66.667 0.00 0.00 0.00 5.19
970 975 3.508840 GGCTTCATTGGGGACGCG 61.509 66.667 3.53 3.53 33.25 6.01
971 976 4.179579 GCTTCATTGGGGACGCGC 62.180 66.667 5.73 0.00 0.00 6.86
973 978 4.337177 TTCATTGGGGACGCGCCA 62.337 61.111 18.87 10.54 44.70 5.69
1017 1023 2.448542 ATGTCTAGCCCGGCCCAT 60.449 61.111 5.55 0.65 0.00 4.00
1018 1024 2.822637 ATGTCTAGCCCGGCCCATG 61.823 63.158 5.55 0.00 0.00 3.66
1019 1025 3.480133 GTCTAGCCCGGCCCATGT 61.480 66.667 5.55 0.00 0.00 3.21
1020 1026 2.690881 TCTAGCCCGGCCCATGTT 60.691 61.111 5.55 0.00 0.00 2.71
1021 1027 2.516930 CTAGCCCGGCCCATGTTG 60.517 66.667 5.55 0.00 0.00 3.33
1022 1028 4.813235 TAGCCCGGCCCATGTTGC 62.813 66.667 5.55 0.00 0.00 4.17
1025 1031 4.067913 CCCGGCCCATGTTGCAAC 62.068 66.667 22.83 22.83 0.00 4.17
1026 1032 4.067913 CCGGCCCATGTTGCAACC 62.068 66.667 26.14 10.47 0.00 3.77
1027 1033 4.067913 CGGCCCATGTTGCAACCC 62.068 66.667 26.14 17.80 0.00 4.11
1028 1034 3.705289 GGCCCATGTTGCAACCCC 61.705 66.667 26.14 14.27 0.00 4.95
1029 1035 3.705289 GCCCATGTTGCAACCCCC 61.705 66.667 26.14 7.04 0.00 5.40
1030 1036 2.203758 CCCATGTTGCAACCCCCA 60.204 61.111 26.14 8.56 0.00 4.96
1031 1037 2.582493 CCCATGTTGCAACCCCCAC 61.582 63.158 26.14 1.64 0.00 4.61
1032 1038 2.582493 CCATGTTGCAACCCCCACC 61.582 63.158 26.14 0.22 0.00 4.61
1033 1039 2.203773 ATGTTGCAACCCCCACCC 60.204 61.111 26.14 0.00 0.00 4.61
1036 1042 4.548513 TTGCAACCCCCACCCCAC 62.549 66.667 0.00 0.00 0.00 4.61
1056 1062 2.286826 CAGCCCACCTACTGCTACA 58.713 57.895 0.00 0.00 33.16 2.74
1060 1066 1.960471 GCCCACCTACTGCTACAGAGA 60.960 57.143 0.78 0.00 35.18 3.10
1061 1067 2.028130 CCCACCTACTGCTACAGAGAG 58.972 57.143 0.78 0.00 35.18 3.20
1062 1068 2.357257 CCCACCTACTGCTACAGAGAGA 60.357 54.545 0.78 0.00 35.18 3.10
1063 1069 3.357203 CCACCTACTGCTACAGAGAGAA 58.643 50.000 0.78 0.00 35.18 2.87
1065 1071 3.759086 CACCTACTGCTACAGAGAGAACA 59.241 47.826 0.78 0.00 35.18 3.18
1072 1078 3.130164 TGCTACAGAGAGAACATCTGCTC 59.870 47.826 2.96 0.00 46.64 4.26
1083 1089 3.958629 ATCTGCTCCCCAGCCCACT 62.959 63.158 0.00 0.00 46.26 4.00
1103 1109 2.183555 GCCTCTTGCCAATGCTGC 59.816 61.111 0.00 0.00 38.71 5.25
1106 1112 0.963856 CCTCTTGCCAATGCTGCTGA 60.964 55.000 0.00 0.00 38.71 4.26
1123 1129 0.107263 TGATGCTGCTATTTCGCCCA 60.107 50.000 0.00 0.00 0.00 5.36
1124 1130 0.308993 GATGCTGCTATTTCGCCCAC 59.691 55.000 0.00 0.00 0.00 4.61
1125 1131 1.103398 ATGCTGCTATTTCGCCCACC 61.103 55.000 0.00 0.00 0.00 4.61
1126 1132 1.748879 GCTGCTATTTCGCCCACCA 60.749 57.895 0.00 0.00 0.00 4.17
1129 1135 1.377987 GCTATTTCGCCCACCACCA 60.378 57.895 0.00 0.00 0.00 4.17
1133 1139 2.786512 ATTTCGCCCACCACCATGCT 62.787 55.000 0.00 0.00 0.00 3.79
1138 1144 1.454479 CCCACCACCATGCTGGATC 60.454 63.158 14.19 0.00 40.96 3.36
1148 1154 3.157252 GCTGGATCCGCCTCTCCA 61.157 66.667 15.14 0.00 39.23 3.86
1152 1158 3.551407 GATCCGCCTCTCCACCCC 61.551 72.222 0.00 0.00 0.00 4.95
1157 1163 4.083862 GCCTCTCCACCCCGTGTC 62.084 72.222 0.00 0.00 0.00 3.67
1158 1164 2.603473 CCTCTCCACCCCGTGTCA 60.603 66.667 0.00 0.00 0.00 3.58
1159 1165 1.990060 CCTCTCCACCCCGTGTCAT 60.990 63.158 0.00 0.00 0.00 3.06
1160 1166 1.517832 CTCTCCACCCCGTGTCATC 59.482 63.158 0.00 0.00 0.00 2.92
1161 1167 1.961180 CTCTCCACCCCGTGTCATCC 61.961 65.000 0.00 0.00 0.00 3.51
1162 1168 1.990060 CTCCACCCCGTGTCATCCT 60.990 63.158 0.00 0.00 0.00 3.24
1163 1169 1.961180 CTCCACCCCGTGTCATCCTC 61.961 65.000 0.00 0.00 0.00 3.71
1164 1170 1.990060 CCACCCCGTGTCATCCTCT 60.990 63.158 0.00 0.00 0.00 3.69
1165 1171 1.219124 CACCCCGTGTCATCCTCTG 59.781 63.158 0.00 0.00 0.00 3.35
1171 1177 2.125391 TGTCATCCTCTGCTGCGC 60.125 61.111 0.00 0.00 0.00 6.09
1173 1179 4.519437 TCATCCTCTGCTGCGCCG 62.519 66.667 4.18 0.00 0.00 6.46
1176 1182 4.742201 TCCTCTGCTGCGCCGTTC 62.742 66.667 4.18 0.00 0.00 3.95
1188 1194 1.675641 GCCGTTCCTCACTGCCATT 60.676 57.895 0.00 0.00 29.51 3.16
1192 1198 0.109597 GTTCCTCACTGCCATTTGCG 60.110 55.000 0.00 0.00 45.60 4.85
1194 1200 2.338015 CCTCACTGCCATTTGCGCT 61.338 57.895 9.73 0.00 45.60 5.92
1201 1207 1.358046 GCCATTTGCGCTGAGATCC 59.642 57.895 9.73 0.00 0.00 3.36
1212 1218 0.752054 CTGAGATCCAGCCTCCACTC 59.248 60.000 0.00 0.00 35.89 3.51
1219 1225 2.364842 AGCCTCCACTCATCGCCT 60.365 61.111 0.00 0.00 0.00 5.52
1221 1227 2.818132 CCTCCACTCATCGCCTCC 59.182 66.667 0.00 0.00 0.00 4.30
1224 1230 2.765807 CCACTCATCGCCTCCCCT 60.766 66.667 0.00 0.00 0.00 4.79
1226 1232 2.444895 ACTCATCGCCTCCCCTCC 60.445 66.667 0.00 0.00 0.00 4.30
1247 1253 4.771356 GACTCGTACGCTGCCGCA 62.771 66.667 11.24 0.00 38.22 5.69
1248 1254 4.778415 ACTCGTACGCTGCCGCAG 62.778 66.667 16.47 16.47 38.22 5.18
1284 1290 3.695606 AGATGCACCAGTCGCCGT 61.696 61.111 0.00 0.00 0.00 5.68
1320 1326 4.554036 GCCGGCCTCTCCACCATC 62.554 72.222 18.11 0.00 34.01 3.51
1322 1328 3.147595 CGGCCTCTCCACCATCGA 61.148 66.667 0.00 0.00 34.01 3.59
1327 1333 3.144120 CTCTCCACCATCGAGCGGG 62.144 68.421 8.43 4.03 0.00 6.13
1353 1359 1.352156 GCGTGCTCCGTAAGAAGTGG 61.352 60.000 0.00 0.00 43.02 4.00
1364 1370 2.513897 GAAGTGGGGAATCGCCGG 60.514 66.667 11.82 0.00 39.47 6.13
1380 1386 2.049802 GGCGACCTCGACGACAAA 60.050 61.111 0.00 0.00 43.02 2.83
1384 1390 1.006571 GACCTCGACGACAAAGCCA 60.007 57.895 0.00 0.00 0.00 4.75
1386 1392 2.027625 CCTCGACGACAAAGCCACC 61.028 63.158 0.00 0.00 0.00 4.61
1402 1408 2.281345 CCGAGGAGGCCATGATGC 60.281 66.667 5.01 0.00 0.00 3.91
1406 1412 0.182061 GAGGAGGCCATGATGCAGAA 59.818 55.000 5.01 0.00 0.00 3.02
1407 1413 0.106819 AGGAGGCCATGATGCAGAAC 60.107 55.000 5.01 0.00 0.00 3.01
1413 1419 2.034305 GGCCATGATGCAGAACTTCATC 59.966 50.000 0.00 7.33 40.26 2.92
1426 1432 4.692625 AGAACTTCATCGACATGTTCAAGG 59.307 41.667 19.25 0.00 39.33 3.61
1428 1434 4.248859 ACTTCATCGACATGTTCAAGGAG 58.751 43.478 0.00 0.00 0.00 3.69
1432 1438 1.796796 GACATGTTCAAGGAGCCGC 59.203 57.895 0.00 0.00 0.00 6.53
1449 1455 1.518133 GCTCAGCGCTGACGAGATT 60.518 57.895 35.30 0.00 43.93 2.40
1470 1476 2.436824 GCGGTCAAGGCCCTCTTC 60.437 66.667 0.00 0.00 32.41 2.87
1473 1479 1.219393 GGTCAAGGCCCTCTTCTCG 59.781 63.158 0.00 0.00 32.41 4.04
1497 1503 2.673523 CAGCTGACCAAGGGGAGG 59.326 66.667 8.42 0.00 38.05 4.30
1500 1506 2.935481 CTGACCAAGGGGAGGCCA 60.935 66.667 5.01 0.00 38.05 5.36
1506 1512 3.342477 AAGGGGAGGCCAAGCTCC 61.342 66.667 5.01 2.03 38.96 4.70
1573 1579 3.083997 CCGCTTAGGTGGGCCTCT 61.084 66.667 4.53 5.07 45.64 3.69
1575 1581 2.592308 GCTTAGGTGGGCCTCTGG 59.408 66.667 4.53 2.06 45.64 3.86
1577 1583 1.853250 GCTTAGGTGGGCCTCTGGTT 61.853 60.000 4.53 0.00 45.64 3.67
1579 1585 1.205460 TTAGGTGGGCCTCTGGTTCC 61.205 60.000 4.53 0.00 45.64 3.62
1589 1595 0.961358 CTCTGGTTCCTCGTCGACCT 60.961 60.000 10.58 0.00 34.52 3.85
1593 1599 1.655885 GGTTCCTCGTCGACCTCCTC 61.656 65.000 10.58 0.00 0.00 3.71
1600 1606 3.838271 TCGACCTCCTCGCCATGC 61.838 66.667 0.00 0.00 42.62 4.06
1619 1625 1.227205 CTGCCTCGACTCCATGCTC 60.227 63.158 0.00 0.00 0.00 4.26
1621 1627 3.069980 GCCTCGACTCCATGCTCGT 62.070 63.158 5.81 0.00 0.00 4.18
1624 1630 0.317436 CTCGACTCCATGCTCGTAGC 60.317 60.000 5.81 0.58 42.82 3.58
1668 1674 5.412594 AGTTGTATCTGCCATGTACTTTGTG 59.587 40.000 0.00 0.00 0.00 3.33
1671 1677 3.694043 TCTGCCATGTACTTTGTGCTA 57.306 42.857 0.00 0.00 0.00 3.49
1672 1678 3.599343 TCTGCCATGTACTTTGTGCTAG 58.401 45.455 0.00 0.00 0.00 3.42
1673 1679 3.007940 TCTGCCATGTACTTTGTGCTAGT 59.992 43.478 0.00 0.00 0.00 2.57
1675 1681 3.751175 TGCCATGTACTTTGTGCTAGTTC 59.249 43.478 0.00 0.00 0.00 3.01
1677 1683 4.455877 GCCATGTACTTTGTGCTAGTTCTT 59.544 41.667 0.00 0.00 0.00 2.52
1679 1685 5.934625 CCATGTACTTTGTGCTAGTTCTTCT 59.065 40.000 0.00 0.00 0.00 2.85
1680 1686 6.428159 CCATGTACTTTGTGCTAGTTCTTCTT 59.572 38.462 0.00 0.00 0.00 2.52
1681 1687 7.360438 CCATGTACTTTGTGCTAGTTCTTCTTC 60.360 40.741 0.00 0.00 0.00 2.87
1682 1688 6.817184 TGTACTTTGTGCTAGTTCTTCTTCT 58.183 36.000 0.00 0.00 0.00 2.85
1683 1689 6.701841 TGTACTTTGTGCTAGTTCTTCTTCTG 59.298 38.462 0.00 0.00 0.00 3.02
1684 1690 4.513318 ACTTTGTGCTAGTTCTTCTTCTGC 59.487 41.667 0.00 0.00 0.00 4.26
1685 1691 4.342862 TTGTGCTAGTTCTTCTTCTGCT 57.657 40.909 0.00 0.00 0.00 4.24
1686 1692 3.919216 TGTGCTAGTTCTTCTTCTGCTC 58.081 45.455 0.00 0.00 0.00 4.26
1702 1708 5.028549 TCTGCTCTGTTCTTCTTCAGTTT 57.971 39.130 0.00 0.00 33.89 2.66
1703 1709 5.053145 TCTGCTCTGTTCTTCTTCAGTTTC 58.947 41.667 0.00 0.00 33.89 2.78
1706 1712 4.708177 CTCTGTTCTTCTTCAGTTTCCCA 58.292 43.478 0.00 0.00 33.89 4.37
1708 1714 6.433847 TCTGTTCTTCTTCAGTTTCCCATA 57.566 37.500 0.00 0.00 33.89 2.74
1711 1717 5.945784 TGTTCTTCTTCAGTTTCCCATATGG 59.054 40.000 15.41 15.41 0.00 2.74
1722 1728 3.923354 CCATATGGGCTCTTCTCCG 57.077 57.895 14.52 0.00 0.00 4.63
1739 1745 1.261938 CCGTCAGTCATGTACCCCCA 61.262 60.000 0.00 0.00 0.00 4.96
1743 1749 1.906574 TCAGTCATGTACCCCCAAGTC 59.093 52.381 0.00 0.00 0.00 3.01
1744 1750 1.065418 CAGTCATGTACCCCCAAGTCC 60.065 57.143 0.00 0.00 0.00 3.85
1746 1752 1.065418 GTCATGTACCCCCAAGTCCAG 60.065 57.143 0.00 0.00 0.00 3.86
1755 1761 1.328279 CCCAAGTCCAGTTGTTTCCC 58.672 55.000 0.00 0.00 0.00 3.97
1768 1774 1.079503 GTTTCCCGATGAGTGAGCAC 58.920 55.000 0.00 0.00 0.00 4.40
1771 1777 0.037326 TCCCGATGAGTGAGCACAAC 60.037 55.000 3.19 0.00 0.00 3.32
1776 1782 2.663602 CGATGAGTGAGCACAACTGTAC 59.336 50.000 3.19 0.00 0.00 2.90
1795 1801 3.329929 ACCATCCTAAACTGGAACGTC 57.670 47.619 0.00 0.00 39.85 4.34
1801 1807 0.037975 TAAACTGGAACGTCCGAGGC 60.038 55.000 0.00 0.00 40.17 4.70
1816 1822 2.044946 GGCCTCAACAATCCCGCT 60.045 61.111 0.00 0.00 0.00 5.52
1817 1823 2.115291 GGCCTCAACAATCCCGCTC 61.115 63.158 0.00 0.00 0.00 5.03
1821 1827 1.413767 CTCAACAATCCCGCTCGTCG 61.414 60.000 0.00 0.00 38.08 5.12
1838 1844 2.377310 CGCCAGGTTGTCCGTAACG 61.377 63.158 0.00 0.00 39.05 3.18
1841 1847 1.005294 CCAGGTTGTCCGTAACGTCG 61.005 60.000 0.00 0.00 39.05 5.12
1850 1856 2.786578 GTCCGTAACGTCGTTACACAAA 59.213 45.455 34.95 20.39 45.87 2.83
1853 1859 3.121696 CCGTAACGTCGTTACACAAACTC 60.122 47.826 34.95 15.41 45.87 3.01
1855 1861 2.193306 ACGTCGTTACACAAACTCGT 57.807 45.000 0.00 0.00 39.56 4.18
1860 1866 2.859538 TCGTTACACAAACTCGTTCCAC 59.140 45.455 0.00 0.00 35.81 4.02
1864 1870 3.530265 ACACAAACTCGTTCCACTGTA 57.470 42.857 0.00 0.00 0.00 2.74
1882 1888 6.708054 CCACTGTAATCTGTCTTCAAGAAACT 59.292 38.462 0.00 0.00 0.00 2.66
1883 1889 7.872993 CCACTGTAATCTGTCTTCAAGAAACTA 59.127 37.037 0.00 0.00 0.00 2.24
1891 1897 6.428159 TCTGTCTTCAAGAAACTAAGATTGCC 59.572 38.462 0.00 0.00 32.26 4.52
1892 1898 6.061441 TGTCTTCAAGAAACTAAGATTGCCA 58.939 36.000 0.00 0.00 32.26 4.92
1894 1900 6.858478 GTCTTCAAGAAACTAAGATTGCCAAC 59.142 38.462 0.00 0.00 32.26 3.77
1895 1901 6.545666 TCTTCAAGAAACTAAGATTGCCAACA 59.454 34.615 0.00 0.00 0.00 3.33
1897 1903 7.288810 TCAAGAAACTAAGATTGCCAACATT 57.711 32.000 0.00 0.00 0.00 2.71
1901 1907 7.542025 AGAAACTAAGATTGCCAACATTGATC 58.458 34.615 0.00 0.00 0.00 2.92
1906 1912 0.447406 TTGCCAACATTGATCGCTCG 59.553 50.000 0.00 0.00 0.00 5.03
1909 1915 0.302890 CCAACATTGATCGCTCGCTC 59.697 55.000 0.00 0.00 0.00 5.03
1914 1920 1.061131 CATTGATCGCTCGCTCGTTTT 59.939 47.619 0.00 0.00 0.00 2.43
1915 1921 1.985334 TTGATCGCTCGCTCGTTTTA 58.015 45.000 0.00 0.00 0.00 1.52
1916 1922 1.545759 TGATCGCTCGCTCGTTTTAG 58.454 50.000 0.00 0.00 0.00 1.85
1927 1933 0.973632 TCGTTTTAGAGCTGCTGGGA 59.026 50.000 7.01 0.00 0.00 4.37
1932 1938 0.692476 TTAGAGCTGCTGGGAAGCAA 59.308 50.000 7.01 0.00 44.88 3.91
1933 1939 0.036010 TAGAGCTGCTGGGAAGCAAC 60.036 55.000 7.01 0.00 44.88 4.17
1936 1942 0.892814 AGCTGCTGGGAAGCAACTTC 60.893 55.000 0.00 0.00 44.88 3.01
1945 1951 1.502231 GAAGCAACTTCGCTGACTCA 58.498 50.000 0.00 0.00 42.89 3.41
1949 1955 1.129437 GCAACTTCGCTGACTCATTCC 59.871 52.381 0.00 0.00 0.00 3.01
1953 1959 0.458543 TTCGCTGACTCATTCCGCTC 60.459 55.000 0.00 0.00 32.44 5.03
1959 1965 1.002274 ACTCATTCCGCTCCCTCCT 59.998 57.895 0.00 0.00 0.00 3.69
1967 1973 2.925262 CGCTCCCTCCTAGCCGATG 61.925 68.421 0.00 0.00 36.60 3.84
1981 1987 3.017581 GATGGCACCAGAGGGGGT 61.018 66.667 0.00 0.00 40.92 4.95
1993 1999 2.854523 GGGGGTATCCTCCTGGCC 60.855 72.222 0.00 0.00 35.33 5.36
1999 2005 0.676736 GTATCCTCCTGGCCTTCTCG 59.323 60.000 3.32 0.00 0.00 4.04
2002 2008 1.984570 CCTCCTGGCCTTCTCGTCA 60.985 63.158 3.32 0.00 0.00 4.35
2006 2012 0.539051 CCTGGCCTTCTCGTCAGATT 59.461 55.000 3.32 0.00 0.00 2.40
2018 2024 7.278646 CCTTCTCGTCAGATTATTTCAACATCA 59.721 37.037 0.00 0.00 0.00 3.07
2042 2048 0.327924 CTCCAGTGCCACCACCAATA 59.672 55.000 0.00 0.00 43.09 1.90
2047 2053 3.620488 CAGTGCCACCACCAATACTATT 58.380 45.455 0.00 0.00 43.09 1.73
2053 2059 3.632145 CCACCACCAATACTATTTCTGCC 59.368 47.826 0.00 0.00 0.00 4.85
2056 2062 4.137543 CCACCAATACTATTTCTGCCTCC 58.862 47.826 0.00 0.00 0.00 4.30
2057 2063 3.809832 CACCAATACTATTTCTGCCTCCG 59.190 47.826 0.00 0.00 0.00 4.63
2059 2065 4.058817 CCAATACTATTTCTGCCTCCGTC 58.941 47.826 0.00 0.00 0.00 4.79
2064 2070 1.207791 ATTTCTGCCTCCGTCTCCAT 58.792 50.000 0.00 0.00 0.00 3.41
2074 2080 4.819761 GTCTCCATGCGCGCCTCA 62.820 66.667 30.77 11.06 0.00 3.86
2113 2119 1.626321 TCTGCGGTTTATGACCCTCAA 59.374 47.619 0.00 0.00 46.35 3.02
2121 2127 2.325583 TATGACCCTCAAACGGATGC 57.674 50.000 0.00 0.00 0.00 3.91
2131 2137 4.159377 TCAAACGGATGCTGACAAATTC 57.841 40.909 0.00 0.00 0.00 2.17
2152 2158 4.060900 TCAGTTTCATCTCTGAACTGTGC 58.939 43.478 13.25 0.00 41.05 4.57
2157 2163 3.429492 TCATCTCTGAACTGTGCTCTCT 58.571 45.455 0.00 0.00 0.00 3.10
2158 2164 3.443329 TCATCTCTGAACTGTGCTCTCTC 59.557 47.826 0.00 0.00 0.00 3.20
2162 2168 3.987547 TCTGAACTGTGCTCTCTCAAAG 58.012 45.455 0.00 0.00 0.00 2.77
2163 2169 3.386078 TCTGAACTGTGCTCTCTCAAAGT 59.614 43.478 0.00 0.00 36.13 2.66
2165 2171 5.244851 TCTGAACTGTGCTCTCTCAAAGTAT 59.755 40.000 0.00 0.00 33.58 2.12
2166 2172 5.473931 TGAACTGTGCTCTCTCAAAGTATC 58.526 41.667 0.00 0.00 33.58 2.24
2173 2179 4.080695 TGCTCTCTCAAAGTATCCATGCTT 60.081 41.667 0.00 0.00 34.08 3.91
2180 2186 4.228210 TCAAAGTATCCATGCTTCCCTCTT 59.772 41.667 0.00 0.00 31.35 2.85
2212 2218 2.716424 TGGGGATTTCAACCTTCTCTGT 59.284 45.455 0.00 0.00 0.00 3.41
2215 2221 3.306780 GGGATTTCAACCTTCTCTGTCGA 60.307 47.826 0.00 0.00 0.00 4.20
2220 2226 1.878656 AACCTTCTCTGTCGAGCCGG 61.879 60.000 0.00 0.00 37.19 6.13
2224 2230 0.965866 TTCTCTGTCGAGCCGGTGAT 60.966 55.000 1.90 0.00 37.19 3.06
2227 2233 1.134367 CTCTGTCGAGCCGGTGATAAA 59.866 52.381 1.90 0.00 0.00 1.40
2237 2243 2.241259 CGGTGATAAAAGCAACGGTG 57.759 50.000 0.00 0.00 42.38 4.94
2269 2275 1.739067 GCCTTATCAACAGCTTCCGT 58.261 50.000 0.00 0.00 0.00 4.69
2271 2277 2.159517 GCCTTATCAACAGCTTCCGTTG 60.160 50.000 8.70 8.70 44.11 4.10
2275 2281 2.978010 AACAGCTTCCGTTGGGCG 60.978 61.111 0.00 0.00 40.95 6.13
2293 2299 1.517242 CGCTGAACTTCCTTGAGCTT 58.483 50.000 0.00 0.00 36.98 3.74
2299 2305 2.910688 ACTTCCTTGAGCTTGACGAA 57.089 45.000 0.00 0.00 0.00 3.85
2303 2309 0.514691 CCTTGAGCTTGACGAACTGC 59.485 55.000 0.00 0.00 0.00 4.40
2305 2311 1.831389 TTGAGCTTGACGAACTGCGC 61.831 55.000 0.00 0.00 46.04 6.09
2308 2314 3.016474 GCTTGACGAACTGCGCCTC 62.016 63.158 4.18 0.00 46.04 4.70
2313 2319 3.197790 CGAACTGCGCCTCCATGG 61.198 66.667 4.97 4.97 39.35 3.66
2314 2320 2.045926 GAACTGCGCCTCCATGGT 60.046 61.111 12.58 0.00 38.35 3.55
2332 2338 2.358247 CGCCGTTACACTTGGGCT 60.358 61.111 0.00 0.00 43.38 5.19
2361 2367 0.102120 CCGCAGCAGACCAAAACAAA 59.898 50.000 0.00 0.00 0.00 2.83
2374 2380 5.519722 ACCAAAACAAAGATTGATCACGTC 58.480 37.500 0.00 0.00 0.00 4.34
2384 2390 3.385193 TTGATCACGTCTTCTGCTCAA 57.615 42.857 0.00 0.00 0.00 3.02
2393 2399 1.089920 CTTCTGCTCAACGGAATGGG 58.910 55.000 0.00 0.00 42.82 4.00
2395 2401 1.002134 CTGCTCAACGGAATGGGGT 60.002 57.895 0.00 0.00 0.00 4.95
2396 2402 1.002624 TGCTCAACGGAATGGGGTC 60.003 57.895 0.00 0.00 0.00 4.46
2401 2407 0.107654 CAACGGAATGGGGTCTCCTC 60.108 60.000 0.00 0.00 36.20 3.71
2408 2414 0.327000 ATGGGGTCTCCTCTTCCCTG 60.327 60.000 0.00 0.00 40.88 4.45
2419 2425 0.620556 TCTTCCCTGAATGCCACCTC 59.379 55.000 0.00 0.00 0.00 3.85
2443 2449 2.275318 GCAACTTCCTCTTCCATCTCG 58.725 52.381 0.00 0.00 0.00 4.04
2454 2460 0.541998 TCCATCTCGGACCACTGTGT 60.542 55.000 7.08 0.00 39.64 3.72
2461 2467 1.067142 TCGGACCACTGTGTTATGCTC 60.067 52.381 7.08 0.00 0.00 4.26
2474 2480 1.558167 TATGCTCCTCACGGGCCAAA 61.558 55.000 4.39 0.00 34.39 3.28
2476 2482 2.115291 GCTCCTCACGGGCCAAATC 61.115 63.158 4.39 0.00 34.39 2.17
2486 2492 2.288763 ACGGGCCAAATCAATCACAAAC 60.289 45.455 4.39 0.00 0.00 2.93
2487 2493 2.336667 GGGCCAAATCAATCACAAACG 58.663 47.619 4.39 0.00 0.00 3.60
2520 2526 5.336451 GGTTCCGTTTTGAGAATTATTGGCT 60.336 40.000 0.00 0.00 0.00 4.75
2527 2533 6.594788 TTTGAGAATTATTGGCTGAAGCTT 57.405 33.333 0.00 0.00 41.70 3.74
2528 2534 5.824904 TGAGAATTATTGGCTGAAGCTTC 57.175 39.130 19.89 19.89 41.70 3.86
2533 2539 0.393537 ATTGGCTGAAGCTTCGAGGG 60.394 55.000 21.11 11.98 41.70 4.30
2541 2547 1.546476 GAAGCTTCGAGGGTTCAGAGA 59.454 52.381 28.10 0.00 41.58 3.10
2542 2548 1.633774 AGCTTCGAGGGTTCAGAGAA 58.366 50.000 0.00 0.00 0.00 2.87
2543 2549 1.971357 AGCTTCGAGGGTTCAGAGAAA 59.029 47.619 0.00 0.00 0.00 2.52
2544 2550 2.569404 AGCTTCGAGGGTTCAGAGAAAT 59.431 45.455 0.00 0.00 0.00 2.17
2545 2551 3.008485 AGCTTCGAGGGTTCAGAGAAATT 59.992 43.478 0.00 0.00 0.00 1.82
2546 2552 3.126000 GCTTCGAGGGTTCAGAGAAATTG 59.874 47.826 0.00 0.00 0.00 2.32
2547 2553 4.319177 CTTCGAGGGTTCAGAGAAATTGT 58.681 43.478 0.00 0.00 0.00 2.71
2548 2554 4.351874 TCGAGGGTTCAGAGAAATTGTT 57.648 40.909 0.00 0.00 0.00 2.83
2549 2555 4.065088 TCGAGGGTTCAGAGAAATTGTTG 58.935 43.478 0.00 0.00 0.00 3.33
2550 2556 3.365364 CGAGGGTTCAGAGAAATTGTTGC 60.365 47.826 0.00 0.00 0.00 4.17
2551 2557 3.823304 GAGGGTTCAGAGAAATTGTTGCT 59.177 43.478 0.00 0.00 0.00 3.91
2552 2558 3.571401 AGGGTTCAGAGAAATTGTTGCTG 59.429 43.478 0.00 0.00 0.00 4.41
2553 2559 3.569701 GGGTTCAGAGAAATTGTTGCTGA 59.430 43.478 0.00 0.00 34.11 4.26
2554 2560 4.219288 GGGTTCAGAGAAATTGTTGCTGAT 59.781 41.667 0.00 0.00 35.73 2.90
2555 2561 5.279156 GGGTTCAGAGAAATTGTTGCTGATT 60.279 40.000 0.00 0.00 35.73 2.57
2556 2562 5.860716 GGTTCAGAGAAATTGTTGCTGATTC 59.139 40.000 0.00 0.00 35.73 2.52
2557 2563 5.633830 TCAGAGAAATTGTTGCTGATTCC 57.366 39.130 0.00 0.00 31.24 3.01
2558 2564 5.319453 TCAGAGAAATTGTTGCTGATTCCT 58.681 37.500 0.00 0.00 31.24 3.36
2559 2565 5.182570 TCAGAGAAATTGTTGCTGATTCCTG 59.817 40.000 0.00 0.00 31.24 3.86
2560 2566 4.461781 AGAGAAATTGTTGCTGATTCCTGG 59.538 41.667 0.00 0.00 0.00 4.45
2561 2567 3.056322 AGAAATTGTTGCTGATTCCTGGC 60.056 43.478 0.00 0.00 0.00 4.85
2562 2568 1.927487 ATTGTTGCTGATTCCTGGCA 58.073 45.000 0.00 0.00 0.00 4.92
2563 2569 1.250328 TTGTTGCTGATTCCTGGCAG 58.750 50.000 7.75 7.75 37.28 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.747255 TGCTCGGAGATGCCTAACTC 59.253 55.000 9.69 0.00 33.89 3.01
1 2 0.749649 CTGCTCGGAGATGCCTAACT 59.250 55.000 9.69 0.00 33.89 2.24
2 3 0.878086 GCTGCTCGGAGATGCCTAAC 60.878 60.000 9.69 0.00 33.89 2.34
3 4 1.443407 GCTGCTCGGAGATGCCTAA 59.557 57.895 9.69 0.00 33.89 2.69
4 5 2.502492 GGCTGCTCGGAGATGCCTA 61.502 63.158 24.66 0.38 41.58 3.93
5 6 3.859414 GGCTGCTCGGAGATGCCT 61.859 66.667 24.66 0.00 41.58 4.75
41 42 1.799121 GTACGACAGGACGTTCGCC 60.799 63.158 7.25 0.00 44.14 5.54
44 45 1.154150 CGGGTACGACAGGACGTTC 60.154 63.158 1.81 0.00 44.14 3.95
56 57 1.521681 GTGCAGCAGGATCGGGTAC 60.522 63.158 0.00 0.00 0.00 3.34
75 76 2.368875 AGTAGTCCCACACCTTGTCAAG 59.631 50.000 5.53 5.53 0.00 3.02
137 138 2.887360 CTTGGGATGCCGCTTTGG 59.113 61.111 0.00 0.00 42.50 3.28
140 141 2.753043 CTGCTTGGGATGCCGCTT 60.753 61.111 0.00 0.00 0.00 4.68
143 144 2.831742 ATGCTGCTTGGGATGCCG 60.832 61.111 0.00 0.00 0.00 5.69
152 153 2.185350 CCGTCGGAGATGCTGCTT 59.815 61.111 4.91 0.00 43.31 3.91
215 216 1.595357 CCTGGGGTTGTCCTCGTAC 59.405 63.158 0.00 0.00 36.91 3.67
281 282 0.031314 CATCATCCGGAGAGTGGTCG 59.969 60.000 11.34 0.00 0.00 4.79
290 291 1.748403 GCTAGCACCATCATCCGGA 59.252 57.895 6.61 6.61 0.00 5.14
293 294 1.963338 GCCGCTAGCACCATCATCC 60.963 63.158 16.45 0.00 42.97 3.51
296 297 4.529219 CCGCCGCTAGCACCATCA 62.529 66.667 16.45 0.00 44.04 3.07
329 330 4.152625 GTGCGACGAGGTGCATGC 62.153 66.667 11.82 11.82 43.96 4.06
331 332 4.760047 GGGTGCGACGAGGTGCAT 62.760 66.667 0.00 0.00 43.96 3.96
335 336 4.988716 TGGAGGGTGCGACGAGGT 62.989 66.667 0.00 0.00 0.00 3.85
348 349 3.699894 AGAGCCAGCACCGTGGAG 61.700 66.667 0.00 0.00 40.44 3.86
351 352 4.694233 AGCAGAGCCAGCACCGTG 62.694 66.667 0.00 0.00 0.00 4.94
406 407 2.508439 CGATGTTGCCGGCGTAGT 60.508 61.111 23.90 8.07 0.00 2.73
457 461 3.722295 CAATGGCGCCGTTGACGT 61.722 61.111 44.78 19.37 43.49 4.34
466 470 2.292794 TACCTCTCCGTCAATGGCGC 62.293 60.000 0.00 0.00 0.00 6.53
468 472 1.653151 GTTACCTCTCCGTCAATGGC 58.347 55.000 0.00 0.00 0.00 4.40
471 475 0.175073 GCCGTTACCTCTCCGTCAAT 59.825 55.000 0.00 0.00 0.00 2.57
477 481 2.493501 GGACGCCGTTACCTCTCC 59.506 66.667 0.00 0.00 0.00 3.71
480 484 2.569072 GAAGGGGACGCCGTTACCTC 62.569 65.000 12.99 0.39 0.00 3.85
481 485 2.605601 AAGGGGACGCCGTTACCT 60.606 61.111 7.71 7.71 0.00 3.08
482 486 2.125391 GAAGGGGACGCCGTTACC 60.125 66.667 2.39 0.00 0.00 2.85
485 489 4.368543 GACGAAGGGGACGCCGTT 62.369 66.667 2.39 0.00 41.75 4.44
507 511 4.785453 CAAGACTGGGGGAGCGGC 62.785 72.222 0.00 0.00 0.00 6.53
510 514 1.301293 CCTTCAAGACTGGGGGAGC 59.699 63.158 0.00 0.00 0.00 4.70
511 515 1.994463 CCCTTCAAGACTGGGGGAG 59.006 63.158 0.00 0.00 37.86 4.30
517 521 2.328099 GCCGTGCCCTTCAAGACTG 61.328 63.158 0.00 0.00 0.00 3.51
518 522 2.032681 GCCGTGCCCTTCAAGACT 59.967 61.111 0.00 0.00 0.00 3.24
536 540 3.423154 GGGAGAGGCAACGCGTTG 61.423 66.667 40.07 40.07 43.56 4.10
543 547 2.759114 CAAGGCAGGGAGAGGCAA 59.241 61.111 0.00 0.00 0.00 4.52
550 554 2.203983 TGCTCTCCAAGGCAGGGA 60.204 61.111 0.00 0.00 34.22 4.20
551 555 2.045536 GTGCTCTCCAAGGCAGGG 60.046 66.667 0.00 0.00 39.22 4.45
648 652 4.711949 CAGAAGCGGTGCTGGGCT 62.712 66.667 15.19 0.00 39.62 5.19
656 660 3.909086 GAAGGCAGGCAGAAGCGGT 62.909 63.158 0.00 0.00 43.41 5.68
670 674 1.621672 GGACTGCAGGAGAGGGAAGG 61.622 65.000 19.93 0.00 0.00 3.46
672 676 1.984570 CGGACTGCAGGAGAGGGAA 60.985 63.158 19.93 0.00 0.00 3.97
674 678 3.465403 CCGGACTGCAGGAGAGGG 61.465 72.222 19.93 7.87 0.00 4.30
679 683 4.704833 GCAAGCCGGACTGCAGGA 62.705 66.667 19.93 0.00 0.00 3.86
681 685 2.979676 TTGCAAGCCGGACTGCAG 60.980 61.111 24.45 13.48 35.05 4.41
684 688 1.455383 AAAGGTTGCAAGCCGGACTG 61.455 55.000 24.26 1.28 0.00 3.51
706 710 3.903783 GCGTAGAAGCCATGGCAA 58.096 55.556 37.18 17.42 44.88 4.52
717 721 1.192428 GAAAGGGAAGGAGGCGTAGA 58.808 55.000 0.00 0.00 0.00 2.59
747 751 2.825836 GGCATAGCAAGCAGGCGT 60.826 61.111 0.00 0.00 39.27 5.68
801 806 2.987547 CAGTGTGGGGCAAGGCAG 60.988 66.667 0.00 0.00 0.00 4.85
806 811 4.208403 AGCAGCAGTGTGGGGCAA 62.208 61.111 0.00 0.00 0.00 4.52
807 812 4.960866 CAGCAGCAGTGTGGGGCA 62.961 66.667 0.00 0.00 0.00 5.36
815 820 2.435586 GACCGCATCAGCAGCAGT 60.436 61.111 0.00 0.00 42.27 4.40
851 856 4.321899 GCTAGGAGCCAATGTATGAGAGAG 60.322 50.000 0.00 0.00 34.48 3.20
852 857 3.576118 GCTAGGAGCCAATGTATGAGAGA 59.424 47.826 0.00 0.00 34.48 3.10
854 859 2.297315 CGCTAGGAGCCAATGTATGAGA 59.703 50.000 0.00 0.00 38.18 3.27
855 860 2.681706 CGCTAGGAGCCAATGTATGAG 58.318 52.381 0.00 0.00 38.18 2.90
856 861 1.270305 GCGCTAGGAGCCAATGTATGA 60.270 52.381 0.00 0.00 38.18 2.15
858 863 1.051812 AGCGCTAGGAGCCAATGTAT 58.948 50.000 8.99 0.00 38.18 2.29
860 865 1.153289 CAGCGCTAGGAGCCAATGT 60.153 57.895 10.99 0.00 38.18 2.71
862 867 0.462759 GTTCAGCGCTAGGAGCCAAT 60.463 55.000 10.99 0.00 38.18 3.16
902 907 2.203167 CTGGCCGAGCAGATGCAT 60.203 61.111 0.00 0.00 45.16 3.96
921 926 0.679505 TACCAGCGAGTTGTCAGCTT 59.320 50.000 0.00 0.00 39.48 3.74
922 927 0.679505 TTACCAGCGAGTTGTCAGCT 59.320 50.000 0.00 0.00 42.64 4.24
924 929 1.798813 GGTTTACCAGCGAGTTGTCAG 59.201 52.381 0.00 0.00 35.64 3.51
929 934 0.763035 ACAGGGTTTACCAGCGAGTT 59.237 50.000 0.69 0.00 43.89 3.01
934 939 0.958876 CGGGAACAGGGTTTACCAGC 60.959 60.000 0.69 0.00 43.89 4.85
940 945 2.931921 AAGCCGGGAACAGGGTTT 59.068 55.556 2.18 0.00 46.06 3.27
942 947 1.789576 AATGAAGCCGGGAACAGGGT 61.790 55.000 2.18 0.00 41.89 4.34
945 950 1.315257 CCCAATGAAGCCGGGAACAG 61.315 60.000 2.18 0.00 43.21 3.16
948 953 2.235028 TCCCCAATGAAGCCGGGAA 61.235 57.895 2.18 0.00 41.72 3.97
949 954 2.612430 TCCCCAATGAAGCCGGGA 60.612 61.111 2.18 0.00 43.21 5.14
950 955 2.440247 GTCCCCAATGAAGCCGGG 60.440 66.667 2.18 0.00 39.92 5.73
953 958 3.508840 CGCGTCCCCAATGAAGCC 61.509 66.667 0.00 0.00 36.55 4.35
957 962 4.337177 TTGGCGCGTCCCCAATGA 62.337 61.111 8.89 0.00 37.43 2.57
959 964 4.652131 TGTTGGCGCGTCCCCAAT 62.652 61.111 17.76 0.00 43.64 3.16
971 976 2.673523 CAGGGAGAGGCCTGTTGG 59.326 66.667 12.00 0.00 36.66 3.77
973 978 2.612115 CCCAGGGAGAGGCCTGTT 60.612 66.667 12.00 0.00 36.66 3.16
1000 1006 2.448542 ATGGGCCGGGCTAGACAT 60.449 61.111 28.80 19.09 0.00 3.06
1017 1023 4.548513 GGGGTGGGGGTTGCAACA 62.549 66.667 29.55 7.67 0.00 3.33
1018 1024 4.548513 TGGGGTGGGGGTTGCAAC 62.549 66.667 21.59 21.59 0.00 4.17
1019 1025 4.548513 GTGGGGTGGGGGTTGCAA 62.549 66.667 0.00 0.00 0.00 4.08
1032 1038 4.778143 GTAGGTGGGCTGCGTGGG 62.778 72.222 0.00 0.00 0.00 4.61
1033 1039 3.706373 AGTAGGTGGGCTGCGTGG 61.706 66.667 0.00 0.00 0.00 4.94
1038 1044 0.176680 CTGTAGCAGTAGGTGGGCTG 59.823 60.000 0.00 0.00 38.55 4.85
1041 1047 2.028130 CTCTCTGTAGCAGTAGGTGGG 58.972 57.143 0.00 0.00 32.61 4.61
1044 1050 4.035612 TGTTCTCTCTGTAGCAGTAGGT 57.964 45.455 0.00 0.00 32.61 3.08
1047 1053 4.097135 GCAGATGTTCTCTCTGTAGCAGTA 59.903 45.833 2.63 0.00 41.77 2.74
1048 1054 3.119173 GCAGATGTTCTCTCTGTAGCAGT 60.119 47.826 2.63 0.00 41.77 4.40
1054 1060 1.830477 GGGAGCAGATGTTCTCTCTGT 59.170 52.381 2.63 0.00 41.77 3.41
1056 1062 1.273495 TGGGGAGCAGATGTTCTCTCT 60.273 52.381 0.00 0.00 30.71 3.10
1060 1066 1.606531 GCTGGGGAGCAGATGTTCT 59.393 57.895 0.00 0.00 34.41 3.01
1061 1067 1.452833 GGCTGGGGAGCAGATGTTC 60.453 63.158 0.00 0.00 36.33 3.18
1062 1068 2.679716 GGCTGGGGAGCAGATGTT 59.320 61.111 0.00 0.00 36.33 2.71
1063 1069 3.415087 GGGCTGGGGAGCAGATGT 61.415 66.667 0.00 0.00 36.33 3.06
1065 1071 3.415087 GTGGGCTGGGGAGCAGAT 61.415 66.667 0.00 0.00 36.33 2.90
1091 1097 1.216977 GCATCAGCAGCATTGGCAA 59.783 52.632 0.68 0.68 44.61 4.52
1092 1098 1.680989 AGCATCAGCAGCATTGGCA 60.681 52.632 0.00 0.00 45.49 4.92
1103 1109 0.590195 GGGCGAAATAGCAGCATCAG 59.410 55.000 0.00 0.00 39.27 2.90
1106 1112 1.103398 GGTGGGCGAAATAGCAGCAT 61.103 55.000 0.00 0.00 39.27 3.79
1113 1119 1.034838 GCATGGTGGTGGGCGAAATA 61.035 55.000 0.00 0.00 0.00 1.40
1114 1120 2.350458 GCATGGTGGTGGGCGAAAT 61.350 57.895 0.00 0.00 0.00 2.17
1115 1121 2.988684 GCATGGTGGTGGGCGAAA 60.989 61.111 0.00 0.00 0.00 3.46
1116 1122 3.965258 AGCATGGTGGTGGGCGAA 61.965 61.111 0.00 0.00 0.00 4.70
1129 1135 2.515071 GGAGAGGCGGATCCAGCAT 61.515 63.158 23.67 19.27 37.29 3.79
1133 1139 2.764128 GGTGGAGAGGCGGATCCA 60.764 66.667 13.41 4.54 43.34 3.41
1135 1141 3.551407 GGGGTGGAGAGGCGGATC 61.551 72.222 0.00 0.00 0.00 3.36
1148 1154 2.660064 GCAGAGGATGACACGGGGT 61.660 63.158 0.00 0.00 0.00 4.95
1152 1158 2.163390 CGCAGCAGAGGATGACACG 61.163 63.158 0.00 0.00 30.05 4.49
1153 1159 3.791539 CGCAGCAGAGGATGACAC 58.208 61.111 0.00 0.00 30.05 3.67
1171 1177 0.523072 CAAATGGCAGTGAGGAACGG 59.477 55.000 0.00 0.00 0.00 4.44
1173 1179 0.109597 CGCAAATGGCAGTGAGGAAC 60.110 55.000 5.21 0.00 45.17 3.62
1176 1182 2.180017 GCGCAAATGGCAGTGAGG 59.820 61.111 0.30 0.00 45.17 3.86
1180 1186 0.679002 ATCTCAGCGCAAATGGCAGT 60.679 50.000 11.47 0.00 45.17 4.40
1194 1200 0.041684 TGAGTGGAGGCTGGATCTCA 59.958 55.000 0.00 0.00 33.18 3.27
1201 1207 2.202987 GGCGATGAGTGGAGGCTG 60.203 66.667 0.00 0.00 0.00 4.85
1209 1215 2.444895 GGAGGGGAGGCGATGAGT 60.445 66.667 0.00 0.00 0.00 3.41
1210 1216 3.610669 CGGAGGGGAGGCGATGAG 61.611 72.222 0.00 0.00 0.00 2.90
1270 1276 4.357947 GAGACGGCGACTGGTGCA 62.358 66.667 17.83 0.00 0.00 4.57
1305 1311 3.144120 CTCGATGGTGGAGAGGCCG 62.144 68.421 0.00 0.00 40.66 6.13
1336 1342 0.391263 CCCCACTTCTTACGGAGCAC 60.391 60.000 0.00 0.00 0.00 4.40
1344 1350 0.177141 CGGCGATTCCCCACTTCTTA 59.823 55.000 0.00 0.00 0.00 2.10
1364 1370 2.717809 GCTTTGTCGTCGAGGTCGC 61.718 63.158 4.85 0.00 39.60 5.19
1376 1382 2.750350 CCTCCTCGGTGGCTTTGT 59.250 61.111 0.00 0.00 35.26 2.83
1384 1390 3.112205 GCATCATGGCCTCCTCGGT 62.112 63.158 3.32 0.00 34.25 4.69
1386 1392 1.597302 CTGCATCATGGCCTCCTCG 60.597 63.158 3.32 0.00 0.00 4.63
1402 1408 5.390251 CCTTGAACATGTCGATGAAGTTCTG 60.390 44.000 17.64 12.58 39.33 3.02
1406 1412 4.248859 CTCCTTGAACATGTCGATGAAGT 58.751 43.478 0.00 0.00 33.36 3.01
1407 1413 3.063180 GCTCCTTGAACATGTCGATGAAG 59.937 47.826 0.00 0.00 33.36 3.02
1413 1419 1.970917 GCGGCTCCTTGAACATGTCG 61.971 60.000 0.00 0.00 0.00 4.35
1432 1438 0.179153 TCAATCTCGTCAGCGCTGAG 60.179 55.000 38.98 29.57 40.75 3.35
1440 1446 1.248101 TGACCGCCTCAATCTCGTCA 61.248 55.000 0.00 0.00 0.00 4.35
1441 1447 0.108804 TTGACCGCCTCAATCTCGTC 60.109 55.000 0.00 0.00 33.65 4.20
1470 1476 2.179517 GTCAGCTGGACCGACGAG 59.820 66.667 15.13 0.00 40.83 4.18
1551 1557 2.668632 CCCACCTAAGCGGCAGAA 59.331 61.111 1.45 0.00 35.61 3.02
1571 1577 0.959372 GAGGTCGACGAGGAACCAGA 60.959 60.000 9.92 0.00 0.00 3.86
1573 1579 1.975407 GGAGGTCGACGAGGAACCA 60.975 63.158 9.92 0.00 0.00 3.67
1575 1581 1.801983 GAGGAGGTCGACGAGGAAC 59.198 63.158 9.92 0.00 0.00 3.62
1600 1606 2.202987 GCATGGAGTCGAGGCAGG 60.203 66.667 6.93 0.00 0.00 4.85
1607 1613 4.310672 GCTACGAGCATGGAGTCG 57.689 61.111 0.00 0.00 41.89 4.18
1621 1627 4.382320 GACCGGTTGGCGGTGCTA 62.382 66.667 9.42 0.00 40.18 3.49
1624 1630 4.003788 AGAGACCGGTTGGCGGTG 62.004 66.667 9.42 0.00 40.18 4.94
1655 1661 5.934625 AGAAGAACTAGCACAAAGTACATGG 59.065 40.000 0.00 0.00 0.00 3.66
1656 1662 7.386299 AGAAGAAGAACTAGCACAAAGTACATG 59.614 37.037 0.00 0.00 0.00 3.21
1657 1663 7.386299 CAGAAGAAGAACTAGCACAAAGTACAT 59.614 37.037 0.00 0.00 0.00 2.29
1659 1665 6.346999 GCAGAAGAAGAACTAGCACAAAGTAC 60.347 42.308 0.00 0.00 0.00 2.73
1660 1666 5.696724 GCAGAAGAAGAACTAGCACAAAGTA 59.303 40.000 0.00 0.00 0.00 2.24
1661 1667 4.513318 GCAGAAGAAGAACTAGCACAAAGT 59.487 41.667 0.00 0.00 0.00 2.66
1663 1669 4.708177 AGCAGAAGAAGAACTAGCACAAA 58.292 39.130 0.00 0.00 0.00 2.83
1668 1674 4.186856 ACAGAGCAGAAGAAGAACTAGC 57.813 45.455 0.00 0.00 0.00 3.42
1671 1677 4.953940 AGAACAGAGCAGAAGAAGAACT 57.046 40.909 0.00 0.00 0.00 3.01
1672 1678 5.296748 AGAAGAACAGAGCAGAAGAAGAAC 58.703 41.667 0.00 0.00 0.00 3.01
1673 1679 5.543507 AGAAGAACAGAGCAGAAGAAGAA 57.456 39.130 0.00 0.00 0.00 2.52
1675 1681 5.295950 TGAAGAAGAACAGAGCAGAAGAAG 58.704 41.667 0.00 0.00 0.00 2.85
1677 1683 4.343526 ACTGAAGAAGAACAGAGCAGAAGA 59.656 41.667 0.00 0.00 37.54 2.87
1679 1685 4.679373 ACTGAAGAAGAACAGAGCAGAA 57.321 40.909 0.00 0.00 37.54 3.02
1680 1686 4.679373 AACTGAAGAAGAACAGAGCAGA 57.321 40.909 0.00 0.00 37.54 4.26
1681 1687 4.213059 GGAAACTGAAGAAGAACAGAGCAG 59.787 45.833 0.00 0.00 37.54 4.24
1682 1688 4.130118 GGAAACTGAAGAAGAACAGAGCA 58.870 43.478 0.00 0.00 37.54 4.26
1683 1689 3.500299 GGGAAACTGAAGAAGAACAGAGC 59.500 47.826 0.00 0.00 37.54 4.09
1684 1690 4.708177 TGGGAAACTGAAGAAGAACAGAG 58.292 43.478 0.00 0.00 37.54 3.35
1685 1691 4.771114 TGGGAAACTGAAGAAGAACAGA 57.229 40.909 0.00 0.00 37.54 3.41
1686 1692 6.094603 CCATATGGGAAACTGAAGAAGAACAG 59.905 42.308 14.52 0.00 40.01 3.16
1706 1712 1.967066 CTGACGGAGAAGAGCCCATAT 59.033 52.381 0.00 0.00 0.00 1.78
1708 1714 0.616111 ACTGACGGAGAAGAGCCCAT 60.616 55.000 0.00 0.00 0.00 4.00
1711 1717 0.820871 ATGACTGACGGAGAAGAGCC 59.179 55.000 0.00 0.00 0.00 4.70
1714 1720 2.753452 GGTACATGACTGACGGAGAAGA 59.247 50.000 0.00 0.00 0.00 2.87
1720 1726 1.261938 TGGGGGTACATGACTGACGG 61.262 60.000 0.00 0.00 0.00 4.79
1722 1728 1.628846 ACTTGGGGGTACATGACTGAC 59.371 52.381 0.00 0.00 0.00 3.51
1739 1745 2.105821 TCATCGGGAAACAACTGGACTT 59.894 45.455 0.00 0.00 0.00 3.01
1743 1749 1.806542 CACTCATCGGGAAACAACTGG 59.193 52.381 0.00 0.00 0.00 4.00
1744 1750 2.738846 CTCACTCATCGGGAAACAACTG 59.261 50.000 0.00 0.00 0.00 3.16
1746 1752 1.464997 GCTCACTCATCGGGAAACAAC 59.535 52.381 0.00 0.00 0.00 3.32
1755 1761 1.788258 ACAGTTGTGCTCACTCATCG 58.212 50.000 1.47 0.00 0.00 3.84
1771 1777 8.995602 GGACGTTCCAGTTTAGGATGGTACAG 62.996 50.000 0.00 0.00 38.14 2.74
1776 1782 2.629051 GGACGTTCCAGTTTAGGATGG 58.371 52.381 0.00 0.00 37.56 3.51
1795 1801 1.452108 GGGATTGTTGAGGCCTCGG 60.452 63.158 27.43 0.00 0.00 4.63
1801 1807 1.079127 ACGAGCGGGATTGTTGAGG 60.079 57.895 0.00 0.00 0.00 3.86
1816 1822 4.351938 CGGACAACCTGGCGACGA 62.352 66.667 0.00 0.00 0.00 4.20
1817 1823 2.752322 TTACGGACAACCTGGCGACG 62.752 60.000 0.00 0.00 0.00 5.12
1821 1827 1.287041 GACGTTACGGACAACCTGGC 61.287 60.000 10.20 0.00 0.00 4.85
1838 1844 2.859538 TGGAACGAGTTTGTGTAACGAC 59.140 45.455 0.00 0.00 42.39 4.34
1841 1847 3.619929 ACAGTGGAACGAGTTTGTGTAAC 59.380 43.478 0.00 0.00 45.86 2.50
1850 1856 3.827302 AGACAGATTACAGTGGAACGAGT 59.173 43.478 0.00 0.00 45.86 4.18
1853 1859 4.556233 TGAAGACAGATTACAGTGGAACG 58.444 43.478 0.00 0.00 45.86 3.95
1855 1861 6.419484 TCTTGAAGACAGATTACAGTGGAA 57.581 37.500 0.00 0.00 0.00 3.53
1860 1866 9.698309 TCTTAGTTTCTTGAAGACAGATTACAG 57.302 33.333 0.00 0.00 0.00 2.74
1864 1870 8.510505 GCAATCTTAGTTTCTTGAAGACAGATT 58.489 33.333 0.00 1.38 32.25 2.40
1882 1888 3.947196 AGCGATCAATGTTGGCAATCTTA 59.053 39.130 1.92 0.00 0.00 2.10
1883 1889 2.756760 AGCGATCAATGTTGGCAATCTT 59.243 40.909 1.92 0.00 0.00 2.40
1891 1897 0.043566 CGAGCGAGCGATCAATGTTG 60.044 55.000 8.89 0.00 0.00 3.33
1892 1898 0.458543 ACGAGCGAGCGATCAATGTT 60.459 50.000 8.89 0.00 34.83 2.71
1894 1900 0.647410 AAACGAGCGAGCGATCAATG 59.353 50.000 8.89 0.00 34.83 2.82
1895 1901 1.359848 AAAACGAGCGAGCGATCAAT 58.640 45.000 8.89 0.00 34.83 2.57
1897 1903 1.131693 TCTAAAACGAGCGAGCGATCA 59.868 47.619 8.89 0.00 34.83 2.92
1901 1907 1.626388 GCTCTAAAACGAGCGAGCG 59.374 57.895 0.00 0.00 45.91 5.03
1909 1915 1.734465 CTTCCCAGCAGCTCTAAAACG 59.266 52.381 0.00 0.00 0.00 3.60
1921 1927 1.968540 AGCGAAGTTGCTTCCCAGC 60.969 57.895 3.63 2.20 44.46 4.85
1924 1930 0.603975 AGTCAGCGAAGTTGCTTCCC 60.604 55.000 3.63 0.00 44.46 3.97
1927 1933 2.175878 ATGAGTCAGCGAAGTTGCTT 57.824 45.000 0.00 0.00 44.46 3.91
1932 1938 0.737715 GCGGAATGAGTCAGCGAAGT 60.738 55.000 0.00 0.00 37.70 3.01
1933 1939 2.002127 GCGGAATGAGTCAGCGAAG 58.998 57.895 0.00 0.00 37.70 3.79
1945 1951 1.839296 GGCTAGGAGGGAGCGGAAT 60.839 63.158 0.00 0.00 41.06 3.01
1949 1955 2.598985 ATCGGCTAGGAGGGAGCG 60.599 66.667 0.00 0.00 41.06 5.03
1967 1973 2.452937 GGATACCCCCTCTGGTGCC 61.453 68.421 0.00 0.00 39.53 5.01
1975 1981 2.290745 GCCAGGAGGATACCCCCT 59.709 66.667 0.00 0.00 39.77 4.79
1981 1987 0.261991 ACGAGAAGGCCAGGAGGATA 59.738 55.000 5.01 0.00 36.89 2.59
1993 1999 8.189709 TGATGTTGAAATAATCTGACGAGAAG 57.810 34.615 0.00 0.00 0.00 2.85
2006 2012 7.148086 GGCACTGGAGTTAATGATGTTGAAATA 60.148 37.037 0.00 0.00 0.00 1.40
2018 2024 1.271926 GGTGGTGGCACTGGAGTTAAT 60.272 52.381 18.45 0.00 0.00 1.40
2042 2048 1.757699 GGAGACGGAGGCAGAAATAGT 59.242 52.381 0.00 0.00 0.00 2.12
2047 2053 1.900351 CATGGAGACGGAGGCAGAA 59.100 57.895 0.00 0.00 0.00 3.02
2057 2063 4.819761 TGAGGCGCGCATGGAGAC 62.820 66.667 34.42 14.34 0.00 3.36
2059 2065 3.344215 GATGAGGCGCGCATGGAG 61.344 66.667 34.42 0.00 0.00 3.86
2074 2080 1.348366 GAGATGCTCCATGAGGCAGAT 59.652 52.381 15.43 8.33 41.88 2.90
2106 2112 0.321653 GTCAGCATCCGTTTGAGGGT 60.322 55.000 0.00 0.00 35.56 4.34
2107 2113 0.321564 TGTCAGCATCCGTTTGAGGG 60.322 55.000 0.00 0.00 0.00 4.30
2131 2137 4.063689 AGCACAGTTCAGAGATGAAACTG 58.936 43.478 11.73 11.73 35.32 3.16
2133 2139 4.314121 AGAGCACAGTTCAGAGATGAAAC 58.686 43.478 0.00 0.00 0.00 2.78
2134 2140 4.282957 AGAGAGCACAGTTCAGAGATGAAA 59.717 41.667 0.00 0.00 0.00 2.69
2146 2152 3.834813 TGGATACTTTGAGAGAGCACAGT 59.165 43.478 0.00 0.00 33.70 3.55
2150 2156 3.453717 AGCATGGATACTTTGAGAGAGCA 59.546 43.478 0.00 0.00 37.61 4.26
2152 2158 5.055812 GGAAGCATGGATACTTTGAGAGAG 58.944 45.833 0.00 0.00 37.61 3.20
2157 2163 3.782523 AGAGGGAAGCATGGATACTTTGA 59.217 43.478 0.00 0.00 37.61 2.69
2158 2164 4.162040 AGAGGGAAGCATGGATACTTTG 57.838 45.455 0.00 0.00 37.61 2.77
2162 2168 2.856222 CCAAGAGGGAAGCATGGATAC 58.144 52.381 0.00 0.00 40.01 2.24
2212 2218 0.248012 TGCTTTTATCACCGGCTCGA 59.752 50.000 0.00 0.00 0.00 4.04
2215 2221 0.802494 CGTTGCTTTTATCACCGGCT 59.198 50.000 0.00 0.00 0.00 5.52
2237 2243 1.740025 GATAAGGCGCCTATTGATGGC 59.260 52.381 33.07 9.70 46.42 4.40
2269 2275 1.150536 AAGGAAGTTCAGCGCCCAA 59.849 52.632 2.29 0.00 0.00 4.12
2271 2277 1.301677 CTCAAGGAAGTTCAGCGCCC 61.302 60.000 2.29 0.00 0.00 6.13
2275 2281 2.225255 GTCAAGCTCAAGGAAGTTCAGC 59.775 50.000 5.01 5.05 0.00 4.26
2278 2284 2.755650 TCGTCAAGCTCAAGGAAGTTC 58.244 47.619 0.00 0.00 0.00 3.01
2299 2305 4.457496 CGACCATGGAGGCGCAGT 62.457 66.667 21.47 0.00 43.14 4.40
2305 2311 1.520787 GTAACGGCGACCATGGAGG 60.521 63.158 21.47 10.69 45.67 4.30
2308 2314 0.672401 AAGTGTAACGGCGACCATGG 60.672 55.000 16.62 11.19 45.86 3.66
2313 2319 2.674084 GCCCAAGTGTAACGGCGAC 61.674 63.158 16.62 1.95 45.86 5.19
2314 2320 1.534336 TAGCCCAAGTGTAACGGCGA 61.534 55.000 16.62 0.00 44.29 5.54
2361 2367 3.194329 TGAGCAGAAGACGTGATCAATCT 59.806 43.478 0.00 0.27 37.39 2.40
2374 2380 1.089920 CCCATTCCGTTGAGCAGAAG 58.910 55.000 0.00 0.00 0.00 2.85
2384 2390 0.252742 AAGAGGAGACCCCATTCCGT 60.253 55.000 0.00 0.00 38.54 4.69
2393 2399 1.134250 GCATTCAGGGAAGAGGAGACC 60.134 57.143 0.00 0.00 0.00 3.85
2395 2401 1.207791 GGCATTCAGGGAAGAGGAGA 58.792 55.000 0.00 0.00 0.00 3.71
2396 2402 0.914644 TGGCATTCAGGGAAGAGGAG 59.085 55.000 0.00 0.00 0.00 3.69
2401 2407 0.394899 GGAGGTGGCATTCAGGGAAG 60.395 60.000 0.00 0.00 0.00 3.46
2408 2414 1.971167 TTGCACGGAGGTGGCATTC 60.971 57.895 0.00 0.00 44.54 2.67
2419 2425 0.250295 TGGAAGAGGAAGTTGCACGG 60.250 55.000 0.00 0.00 0.00 4.94
2474 2480 2.742053 CCGAGAACCGTTTGTGATTGAT 59.258 45.455 0.00 0.00 36.31 2.57
2476 2482 1.196808 CCCGAGAACCGTTTGTGATTG 59.803 52.381 0.00 0.00 36.31 2.67
2503 2509 6.594788 AGCTTCAGCCAATAATTCTCAAAA 57.405 33.333 0.00 0.00 43.38 2.44
2505 2511 5.163723 CGAAGCTTCAGCCAATAATTCTCAA 60.164 40.000 25.47 0.00 43.38 3.02
2520 2526 1.273606 CTCTGAACCCTCGAAGCTTCA 59.726 52.381 25.47 12.01 0.00 3.02
2527 2533 4.065088 CAACAATTTCTCTGAACCCTCGA 58.935 43.478 0.00 0.00 0.00 4.04
2528 2534 3.365364 GCAACAATTTCTCTGAACCCTCG 60.365 47.826 0.00 0.00 0.00 4.63
2533 2539 5.860716 GGAATCAGCAACAATTTCTCTGAAC 59.139 40.000 0.00 0.00 37.34 3.18
2541 2547 2.633967 TGCCAGGAATCAGCAACAATTT 59.366 40.909 0.00 0.00 32.56 1.82
2542 2548 2.232941 CTGCCAGGAATCAGCAACAATT 59.767 45.455 0.00 0.00 35.79 2.32
2543 2549 1.822990 CTGCCAGGAATCAGCAACAAT 59.177 47.619 0.00 0.00 35.79 2.71
2544 2550 1.250328 CTGCCAGGAATCAGCAACAA 58.750 50.000 0.00 0.00 35.79 2.83
2545 2551 2.951269 CTGCCAGGAATCAGCAACA 58.049 52.632 0.00 0.00 35.79 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.