Multiple sequence alignment - TraesCS1D01G243600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G243600 chr1D 100.000 4085 0 0 1 4085 334043946 334039862 0.000000e+00 7544.0
1 TraesCS1D01G243600 chr4A 94.789 2610 124 7 623 3227 716965304 716962702 0.000000e+00 4056.0
2 TraesCS1D01G243600 chr4A 94.715 2403 120 5 1687 4085 123767948 123765549 0.000000e+00 3727.0
3 TraesCS1D01G243600 chr4A 90.844 972 77 7 621 1581 123797893 123796923 0.000000e+00 1291.0
4 TraesCS1D01G243600 chr4A 92.890 872 39 10 3225 4085 726724573 726723714 0.000000e+00 1245.0
5 TraesCS1D01G243600 chr4A 92.857 336 7 2 1 333 481092933 481093254 4.780000e-129 472.0
6 TraesCS1D01G243600 chr4A 87.975 158 15 2 3069 3226 716960951 716960798 2.510000e-42 183.0
7 TraesCS1D01G243600 chr1A 95.689 2482 106 1 985 3465 431979034 431976553 0.000000e+00 3989.0
8 TraesCS1D01G243600 chr1A 95.893 633 21 3 3455 4082 431976215 431975583 0.000000e+00 1020.0
9 TraesCS1D01G243600 chr1A 92.120 533 30 4 463 987 431980767 431980239 0.000000e+00 741.0
10 TraesCS1D01G243600 chr1A 94.207 328 2 2 1 325 482822362 482822675 6.140000e-133 484.0
11 TraesCS1D01G243600 chr1A 93.210 324 5 2 1 321 146613350 146613659 1.030000e-125 460.0
12 TraesCS1D01G243600 chr7A 89.489 2331 212 14 908 3226 16729258 16731567 0.000000e+00 2916.0
13 TraesCS1D01G243600 chr7D 88.227 1444 150 14 907 2336 17424647 17426084 0.000000e+00 1707.0
14 TraesCS1D01G243600 chr7D 92.556 806 60 0 2354 3159 17427425 17428230 0.000000e+00 1157.0
15 TraesCS1D01G243600 chr7D 98.489 331 5 0 1 331 4421136 4421466 5.880000e-163 584.0
16 TraesCS1D01G243600 chr7D 89.908 109 9 2 770 876 55414093 55414201 5.510000e-29 139.0
17 TraesCS1D01G243600 chr7D 89.286 56 5 1 3222 3276 608737792 608737847 7.330000e-08 69.4
18 TraesCS1D01G243600 chr1B 93.456 871 45 6 3225 4085 14437910 14437042 0.000000e+00 1282.0
19 TraesCS1D01G243600 chr1B 93.234 872 41 9 3225 4085 678396464 678395600 0.000000e+00 1267.0
20 TraesCS1D01G243600 chr6B 84.794 947 123 7 978 1918 185100001 185100932 0.000000e+00 931.0
21 TraesCS1D01G243600 chr6B 83.208 929 132 10 999 1918 185110529 185111442 0.000000e+00 830.0
22 TraesCS1D01G243600 chr6B 81.477 907 154 14 2239 3139 185101124 185102022 0.000000e+00 732.0
23 TraesCS1D01G243600 chr6B 82.447 809 131 10 2305 3106 185112524 185113328 0.000000e+00 697.0
24 TraesCS1D01G243600 chr6B 94.574 258 10 2 1 255 279328645 279328389 2.960000e-106 396.0
25 TraesCS1D01G243600 chr6B 93.750 80 5 0 254 333 279328365 279328286 1.990000e-23 121.0
26 TraesCS1D01G243600 chr6A 84.494 948 130 9 978 1918 121659015 121659952 0.000000e+00 920.0
27 TraesCS1D01G243600 chr6A 83.798 932 124 11 999 1918 121871007 121871923 0.000000e+00 859.0
28 TraesCS1D01G243600 chr6A 81.456 879 153 10 2241 3113 121660250 121661124 0.000000e+00 712.0
29 TraesCS1D01G243600 chr6D 83.585 926 125 11 999 1918 101212212 101213116 0.000000e+00 843.0
30 TraesCS1D01G243600 chr6D 80.581 999 161 27 2239 3218 101203304 101204288 0.000000e+00 739.0
31 TraesCS1D01G243600 chr6D 82.639 144 18 5 759 895 436311182 436311039 1.990000e-23 121.0
32 TraesCS1D01G243600 chr5A 96.154 338 9 2 1 334 612382323 612381986 2.150000e-152 549.0
33 TraesCS1D01G243600 chr5A 87.611 113 11 3 761 870 439553883 439553995 1.190000e-25 128.0
34 TraesCS1D01G243600 chr7B 92.916 367 16 6 3719 4085 679728200 679728556 3.620000e-145 525.0
35 TraesCS1D01G243600 chr7B 88.182 110 11 1 769 876 176002982 176002873 3.310000e-26 130.0
36 TraesCS1D01G243600 chr5D 94.817 328 13 2 1 325 550415436 550415110 3.640000e-140 508.0
37 TraesCS1D01G243600 chr3B 93.750 336 4 2 1 333 768509833 768510154 4.750000e-134 488.0
38 TraesCS1D01G243600 chr3B 84.615 65 6 4 3225 3287 784931963 784931901 1.230000e-05 62.1
39 TraesCS1D01G243600 chrUn 93.694 333 4 2 1 330 62689632 62689950 2.210000e-132 483.0
40 TraesCS1D01G243600 chr4D 88.182 110 11 1 763 870 89423903 89424012 3.310000e-26 130.0
41 TraesCS1D01G243600 chr3D 86.957 115 14 1 763 876 582884000 582884114 1.190000e-25 128.0
42 TraesCS1D01G243600 chr3D 91.549 71 6 0 3528 3598 506206582 506206652 9.340000e-17 99.0
43 TraesCS1D01G243600 chr5B 80.114 176 27 6 3225 3397 658994901 658995071 1.540000e-24 124.0
44 TraesCS1D01G243600 chr4B 80.357 168 22 8 3225 3388 667220578 667220738 2.580000e-22 117.0
45 TraesCS1D01G243600 chr2A 100.000 28 0 0 2191 2218 91435333 91435306 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G243600 chr1D 334039862 334043946 4084 True 7544.000000 7544 100.000000 1 4085 1 chr1D.!!$R1 4084
1 TraesCS1D01G243600 chr4A 123765549 123767948 2399 True 3727.000000 3727 94.715000 1687 4085 1 chr4A.!!$R1 2398
2 TraesCS1D01G243600 chr4A 716960798 716965304 4506 True 2119.500000 4056 91.382000 623 3227 2 chr4A.!!$R4 2604
3 TraesCS1D01G243600 chr4A 123796923 123797893 970 True 1291.000000 1291 90.844000 621 1581 1 chr4A.!!$R2 960
4 TraesCS1D01G243600 chr4A 726723714 726724573 859 True 1245.000000 1245 92.890000 3225 4085 1 chr4A.!!$R3 860
5 TraesCS1D01G243600 chr1A 431975583 431980767 5184 True 1916.666667 3989 94.567333 463 4082 3 chr1A.!!$R1 3619
6 TraesCS1D01G243600 chr7A 16729258 16731567 2309 False 2916.000000 2916 89.489000 908 3226 1 chr7A.!!$F1 2318
7 TraesCS1D01G243600 chr7D 17424647 17428230 3583 False 1432.000000 1707 90.391500 907 3159 2 chr7D.!!$F4 2252
8 TraesCS1D01G243600 chr1B 14437042 14437910 868 True 1282.000000 1282 93.456000 3225 4085 1 chr1B.!!$R1 860
9 TraesCS1D01G243600 chr1B 678395600 678396464 864 True 1267.000000 1267 93.234000 3225 4085 1 chr1B.!!$R2 860
10 TraesCS1D01G243600 chr6B 185100001 185102022 2021 False 831.500000 931 83.135500 978 3139 2 chr6B.!!$F1 2161
11 TraesCS1D01G243600 chr6B 185110529 185113328 2799 False 763.500000 830 82.827500 999 3106 2 chr6B.!!$F2 2107
12 TraesCS1D01G243600 chr6A 121871007 121871923 916 False 859.000000 859 83.798000 999 1918 1 chr6A.!!$F1 919
13 TraesCS1D01G243600 chr6A 121659015 121661124 2109 False 816.000000 920 82.975000 978 3113 2 chr6A.!!$F2 2135
14 TraesCS1D01G243600 chr6D 101212212 101213116 904 False 843.000000 843 83.585000 999 1918 1 chr6D.!!$F2 919
15 TraesCS1D01G243600 chr6D 101203304 101204288 984 False 739.000000 739 80.581000 2239 3218 1 chr6D.!!$F1 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.033504 GACAGACTTGGAAGACGCCA 59.966 55.000 0.00 0.00 35.78 5.69 F
98 99 0.036010 AGACTTGGAAGACGCCATGG 60.036 55.000 7.63 7.63 37.86 3.66 F
371 372 0.037232 GCCGGCGCTAGGATAGAAAT 60.037 55.000 22.97 0.00 42.77 2.17 F
418 419 0.324943 AATTCTGGAGTCACCCGTGG 59.675 55.000 0.00 0.00 38.00 4.94 F
445 446 1.065600 CAATATTTGGTGCCGGGCG 59.934 57.895 15.40 0.00 0.00 6.13 F
690 691 1.085893 CTGTCACCGTGCATGCATTA 58.914 50.000 25.64 4.98 0.00 1.90 F
1013 2235 1.229625 TCTCCATGGAGCAGTGGGT 60.230 57.895 33.39 0.00 41.71 4.51 F
1828 3073 2.008400 TGGAGGAAGGAGAGGACCTAA 58.992 52.381 0.00 0.00 39.62 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 3073 0.835941 ATCCTCAAGAGCGCATCCTT 59.164 50.000 11.47 7.06 0.00 3.36 R
1833 3078 1.226974 GCGTATCCTCAAGAGCGCA 60.227 57.895 11.47 0.00 46.00 6.09 R
2036 3564 2.731691 ATCAACTGCGAGGTGGCGTT 62.732 55.000 2.07 0.00 32.64 4.84 R
2359 5852 7.907389 TCCAGTAGCAAATCCTCGAATAATAT 58.093 34.615 0.00 0.00 0.00 1.28 R
2429 5925 9.037737 CGATTTGATGAAATTTGGAATTGCTAT 57.962 29.630 0.00 0.00 31.58 2.97 R
2491 5987 4.352039 CATTGAAGAGTGATTGCTGATGC 58.648 43.478 0.00 0.00 40.20 3.91 R
2975 6471 1.826384 ATCTGGTCTCACCCCTCCCA 61.826 60.000 0.00 0.00 37.50 4.37 R
3292 8700 2.402564 AGACCTGGGTAGTGATCATGG 58.597 52.381 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.504032 GGATTCATCCACGGCCGA 59.496 61.111 35.90 10.61 46.38 5.54
18 19 1.595382 GGATTCATCCACGGCCGAG 60.595 63.158 35.90 25.83 46.38 4.63
19 20 1.441729 GATTCATCCACGGCCGAGA 59.558 57.895 35.90 27.49 0.00 4.04
20 21 0.598680 GATTCATCCACGGCCGAGAG 60.599 60.000 35.90 20.57 0.00 3.20
21 22 2.650813 ATTCATCCACGGCCGAGAGC 62.651 60.000 35.90 0.00 42.60 4.09
22 23 4.147449 CATCCACGGCCGAGAGCA 62.147 66.667 35.90 11.87 46.50 4.26
23 24 3.842923 ATCCACGGCCGAGAGCAG 61.843 66.667 35.90 11.49 46.50 4.24
30 31 2.442272 GCCGAGAGCAGGGGAGTA 60.442 66.667 0.00 0.00 42.97 2.59
31 32 2.787567 GCCGAGAGCAGGGGAGTAC 61.788 68.421 0.00 0.00 42.97 2.73
32 33 2.128507 CCGAGAGCAGGGGAGTACC 61.129 68.421 0.00 0.00 39.11 3.34
33 34 2.482333 CGAGAGCAGGGGAGTACCG 61.482 68.421 0.00 0.00 41.60 4.02
34 35 2.042843 AGAGCAGGGGAGTACCGG 60.043 66.667 0.00 0.00 41.60 5.28
35 36 2.363925 GAGCAGGGGAGTACCGGT 60.364 66.667 13.98 13.98 41.60 5.28
36 37 2.683933 AGCAGGGGAGTACCGGTG 60.684 66.667 19.93 0.00 41.60 4.94
37 38 3.001406 GCAGGGGAGTACCGGTGT 61.001 66.667 19.93 3.63 41.60 4.16
38 39 3.015312 GCAGGGGAGTACCGGTGTC 62.015 68.421 19.93 13.92 41.60 3.67
39 40 1.608336 CAGGGGAGTACCGGTGTCA 60.608 63.158 19.93 0.00 41.60 3.58
40 41 1.305046 AGGGGAGTACCGGTGTCAG 60.305 63.158 19.93 0.00 41.60 3.51
41 42 2.577593 GGGAGTACCGGTGTCAGC 59.422 66.667 19.93 6.65 36.97 4.26
42 43 2.181021 GGAGTACCGGTGTCAGCG 59.819 66.667 19.93 17.32 39.06 5.18
43 44 2.338015 GGAGTACCGGTGTCAGCGA 61.338 63.158 25.16 3.75 42.41 4.93
44 45 1.136984 GAGTACCGGTGTCAGCGAG 59.863 63.158 25.16 16.76 42.41 5.03
45 46 2.506438 GTACCGGTGTCAGCGAGC 60.506 66.667 25.16 10.85 42.41 5.03
46 47 4.111016 TACCGGTGTCAGCGAGCG 62.111 66.667 25.16 11.37 42.41 5.03
50 51 4.803426 GGTGTCAGCGAGCGGAGG 62.803 72.222 0.00 0.00 0.00 4.30
51 52 3.749064 GTGTCAGCGAGCGGAGGA 61.749 66.667 0.00 0.00 0.00 3.71
52 53 3.443925 TGTCAGCGAGCGGAGGAG 61.444 66.667 0.00 0.00 0.00 3.69
53 54 4.200283 GTCAGCGAGCGGAGGAGG 62.200 72.222 0.00 0.00 0.00 4.30
54 55 4.426313 TCAGCGAGCGGAGGAGGA 62.426 66.667 0.00 0.00 0.00 3.71
55 56 3.452786 CAGCGAGCGGAGGAGGAA 61.453 66.667 0.00 0.00 0.00 3.36
56 57 2.443016 AGCGAGCGGAGGAGGAAT 60.443 61.111 0.00 0.00 0.00 3.01
57 58 2.028337 GCGAGCGGAGGAGGAATC 59.972 66.667 0.00 0.00 0.00 2.52
58 59 2.333225 CGAGCGGAGGAGGAATCG 59.667 66.667 0.00 0.00 0.00 3.34
59 60 2.731374 GAGCGGAGGAGGAATCGG 59.269 66.667 0.00 0.00 0.00 4.18
60 61 1.828660 GAGCGGAGGAGGAATCGGA 60.829 63.158 0.00 0.00 0.00 4.55
61 62 1.801309 GAGCGGAGGAGGAATCGGAG 61.801 65.000 0.00 0.00 0.00 4.63
62 63 2.862223 GCGGAGGAGGAATCGGAGG 61.862 68.421 0.00 0.00 0.00 4.30
63 64 2.203771 CGGAGGAGGAATCGGAGGG 61.204 68.421 0.00 0.00 0.00 4.30
64 65 1.839296 GGAGGAGGAATCGGAGGGG 60.839 68.421 0.00 0.00 0.00 4.79
65 66 1.233369 GAGGAGGAATCGGAGGGGA 59.767 63.158 0.00 0.00 0.00 4.81
66 67 1.075151 AGGAGGAATCGGAGGGGAC 60.075 63.158 0.00 0.00 0.00 4.46
79 80 2.741092 GGGACCAGCAAGACGACA 59.259 61.111 0.00 0.00 0.00 4.35
80 81 1.374758 GGGACCAGCAAGACGACAG 60.375 63.158 0.00 0.00 0.00 3.51
81 82 1.666011 GGACCAGCAAGACGACAGA 59.334 57.895 0.00 0.00 0.00 3.41
82 83 0.667792 GGACCAGCAAGACGACAGAC 60.668 60.000 0.00 0.00 0.00 3.51
83 84 0.315568 GACCAGCAAGACGACAGACT 59.684 55.000 0.00 0.00 0.00 3.24
84 85 0.753262 ACCAGCAAGACGACAGACTT 59.247 50.000 0.00 0.00 32.88 3.01
86 87 1.143305 CAGCAAGACGACAGACTTGG 58.857 55.000 11.28 0.00 45.60 3.61
87 88 1.040646 AGCAAGACGACAGACTTGGA 58.959 50.000 11.28 0.00 45.60 3.53
88 89 1.412710 AGCAAGACGACAGACTTGGAA 59.587 47.619 11.28 0.00 45.60 3.53
89 90 1.795286 GCAAGACGACAGACTTGGAAG 59.205 52.381 11.28 0.00 45.60 3.46
90 91 2.545952 GCAAGACGACAGACTTGGAAGA 60.546 50.000 11.28 0.00 45.60 2.87
91 92 3.053455 CAAGACGACAGACTTGGAAGAC 58.947 50.000 0.00 0.00 43.16 3.01
92 93 1.267261 AGACGACAGACTTGGAAGACG 59.733 52.381 0.00 0.00 0.00 4.18
93 94 0.318784 ACGACAGACTTGGAAGACGC 60.319 55.000 0.00 0.00 0.00 5.19
94 95 1.009389 CGACAGACTTGGAAGACGCC 61.009 60.000 0.00 0.00 0.00 5.68
95 96 0.033504 GACAGACTTGGAAGACGCCA 59.966 55.000 0.00 0.00 35.78 5.69
96 97 0.687354 ACAGACTTGGAAGACGCCAT 59.313 50.000 0.00 0.00 37.86 4.40
97 98 1.081892 CAGACTTGGAAGACGCCATG 58.918 55.000 0.00 0.00 37.86 3.66
98 99 0.036010 AGACTTGGAAGACGCCATGG 60.036 55.000 7.63 7.63 37.86 3.66
99 100 1.648467 GACTTGGAAGACGCCATGGC 61.648 60.000 27.67 27.67 37.86 4.40
100 101 1.377725 CTTGGAAGACGCCATGGCT 60.378 57.895 33.07 20.54 37.86 4.75
101 102 1.651240 CTTGGAAGACGCCATGGCTG 61.651 60.000 33.07 26.84 37.86 4.85
102 103 2.123248 TTGGAAGACGCCATGGCTGA 62.123 55.000 33.07 8.04 37.86 4.26
103 104 1.153086 GGAAGACGCCATGGCTGAT 60.153 57.895 33.07 19.14 39.32 2.90
104 105 0.749454 GGAAGACGCCATGGCTGATT 60.749 55.000 33.07 23.16 39.32 2.57
105 106 1.098050 GAAGACGCCATGGCTGATTT 58.902 50.000 33.07 21.00 39.32 2.17
106 107 0.813184 AAGACGCCATGGCTGATTTG 59.187 50.000 33.07 19.22 39.32 2.32
107 108 1.033746 AGACGCCATGGCTGATTTGG 61.034 55.000 33.07 18.49 39.32 3.28
108 109 2.008268 GACGCCATGGCTGATTTGGG 62.008 60.000 33.07 17.76 39.32 4.12
109 110 2.788640 CGCCATGGCTGATTTGGGG 61.789 63.158 33.07 11.50 39.32 4.96
110 111 1.381599 GCCATGGCTGATTTGGGGA 60.382 57.895 29.98 0.00 38.26 4.81
111 112 0.977108 GCCATGGCTGATTTGGGGAA 60.977 55.000 29.98 0.00 38.26 3.97
112 113 1.570803 CCATGGCTGATTTGGGGAAA 58.429 50.000 0.00 0.00 0.00 3.13
113 114 1.483415 CCATGGCTGATTTGGGGAAAG 59.517 52.381 0.00 0.00 0.00 2.62
114 115 2.181975 CATGGCTGATTTGGGGAAAGT 58.818 47.619 0.00 0.00 0.00 2.66
115 116 1.631405 TGGCTGATTTGGGGAAAGTG 58.369 50.000 0.00 0.00 0.00 3.16
116 117 1.146774 TGGCTGATTTGGGGAAAGTGA 59.853 47.619 0.00 0.00 0.00 3.41
117 118 1.821136 GGCTGATTTGGGGAAAGTGAG 59.179 52.381 0.00 0.00 0.00 3.51
118 119 2.555227 GGCTGATTTGGGGAAAGTGAGA 60.555 50.000 0.00 0.00 0.00 3.27
119 120 2.751806 GCTGATTTGGGGAAAGTGAGAG 59.248 50.000 0.00 0.00 0.00 3.20
120 121 3.812167 GCTGATTTGGGGAAAGTGAGAGT 60.812 47.826 0.00 0.00 0.00 3.24
121 122 3.754965 TGATTTGGGGAAAGTGAGAGTG 58.245 45.455 0.00 0.00 0.00 3.51
122 123 3.394274 TGATTTGGGGAAAGTGAGAGTGA 59.606 43.478 0.00 0.00 0.00 3.41
123 124 3.492102 TTTGGGGAAAGTGAGAGTGAG 57.508 47.619 0.00 0.00 0.00 3.51
124 125 2.103153 TGGGGAAAGTGAGAGTGAGT 57.897 50.000 0.00 0.00 0.00 3.41
125 126 1.971357 TGGGGAAAGTGAGAGTGAGTC 59.029 52.381 0.00 0.00 0.00 3.36
126 127 1.971357 GGGGAAAGTGAGAGTGAGTCA 59.029 52.381 0.00 0.00 0.00 3.41
127 128 2.289133 GGGGAAAGTGAGAGTGAGTCAC 60.289 54.545 15.78 15.78 44.02 3.67
131 132 2.642425 GTGAGAGTGAGTCACGGGA 58.358 57.895 17.40 0.73 39.64 5.14
132 133 0.523966 GTGAGAGTGAGTCACGGGAG 59.476 60.000 17.40 0.00 39.64 4.30
133 134 0.609406 TGAGAGTGAGTCACGGGAGG 60.609 60.000 17.40 0.00 39.64 4.30
134 135 0.322636 GAGAGTGAGTCACGGGAGGA 60.323 60.000 17.40 0.00 39.64 3.71
135 136 0.322997 AGAGTGAGTCACGGGAGGAG 60.323 60.000 17.40 0.00 39.64 3.69
136 137 0.322636 GAGTGAGTCACGGGAGGAGA 60.323 60.000 17.40 0.00 39.64 3.71
137 138 0.112606 AGTGAGTCACGGGAGGAGAA 59.887 55.000 17.40 0.00 39.64 2.87
138 139 0.966920 GTGAGTCACGGGAGGAGAAA 59.033 55.000 7.68 0.00 0.00 2.52
139 140 1.343465 GTGAGTCACGGGAGGAGAAAA 59.657 52.381 7.68 0.00 0.00 2.29
140 141 1.618837 TGAGTCACGGGAGGAGAAAAG 59.381 52.381 0.00 0.00 0.00 2.27
141 142 0.977395 AGTCACGGGAGGAGAAAAGG 59.023 55.000 0.00 0.00 0.00 3.11
142 143 0.974383 GTCACGGGAGGAGAAAAGGA 59.026 55.000 0.00 0.00 0.00 3.36
143 144 1.346722 GTCACGGGAGGAGAAAAGGAA 59.653 52.381 0.00 0.00 0.00 3.36
144 145 2.051692 TCACGGGAGGAGAAAAGGAAA 58.948 47.619 0.00 0.00 0.00 3.13
145 146 2.152016 CACGGGAGGAGAAAAGGAAAC 58.848 52.381 0.00 0.00 0.00 2.78
146 147 1.772453 ACGGGAGGAGAAAAGGAAACA 59.228 47.619 0.00 0.00 0.00 2.83
147 148 2.224548 ACGGGAGGAGAAAAGGAAACAG 60.225 50.000 0.00 0.00 0.00 3.16
148 149 2.163509 GGGAGGAGAAAAGGAAACAGC 58.836 52.381 0.00 0.00 0.00 4.40
149 150 2.163509 GGAGGAGAAAAGGAAACAGCC 58.836 52.381 0.00 0.00 0.00 4.85
150 151 2.163509 GAGGAGAAAAGGAAACAGCCC 58.836 52.381 0.00 0.00 0.00 5.19
151 152 1.499007 AGGAGAAAAGGAAACAGCCCA 59.501 47.619 0.00 0.00 0.00 5.36
152 153 1.613925 GGAGAAAAGGAAACAGCCCAC 59.386 52.381 0.00 0.00 0.00 4.61
153 154 2.587522 GAGAAAAGGAAACAGCCCACT 58.412 47.619 0.00 0.00 0.00 4.00
176 177 4.563140 GAGGGTATCCAAACAAGGTACA 57.437 45.455 0.00 0.00 34.83 2.90
177 178 5.112129 GAGGGTATCCAAACAAGGTACAT 57.888 43.478 0.00 0.00 34.83 2.29
178 179 4.855340 AGGGTATCCAAACAAGGTACATG 58.145 43.478 0.00 0.00 34.83 3.21
179 180 4.538490 AGGGTATCCAAACAAGGTACATGA 59.462 41.667 0.00 0.00 34.83 3.07
180 181 4.638865 GGGTATCCAAACAAGGTACATGAC 59.361 45.833 0.00 0.00 0.00 3.06
181 182 8.498960 AGGGTATCCAAACAAGGTACATGACC 62.499 46.154 0.00 2.70 41.56 4.02
190 191 2.467566 GGTACATGACCGACCAGTTT 57.532 50.000 0.00 0.00 38.87 2.66
191 192 2.774687 GGTACATGACCGACCAGTTTT 58.225 47.619 0.00 0.00 38.87 2.43
192 193 3.143728 GGTACATGACCGACCAGTTTTT 58.856 45.455 0.00 0.00 38.87 1.94
193 194 3.187842 GGTACATGACCGACCAGTTTTTC 59.812 47.826 0.00 0.00 38.87 2.29
194 195 3.208747 ACATGACCGACCAGTTTTTCT 57.791 42.857 0.00 0.00 0.00 2.52
195 196 2.878406 ACATGACCGACCAGTTTTTCTG 59.122 45.455 0.00 0.00 43.27 3.02
196 197 2.702592 TGACCGACCAGTTTTTCTGT 57.297 45.000 0.00 0.00 42.19 3.41
197 198 2.993937 TGACCGACCAGTTTTTCTGTT 58.006 42.857 0.00 0.00 42.19 3.16
198 199 3.349022 TGACCGACCAGTTTTTCTGTTT 58.651 40.909 0.00 0.00 42.19 2.83
199 200 3.759618 TGACCGACCAGTTTTTCTGTTTT 59.240 39.130 0.00 0.00 42.19 2.43
200 201 4.142556 TGACCGACCAGTTTTTCTGTTTTC 60.143 41.667 0.00 0.00 42.19 2.29
201 202 3.129813 ACCGACCAGTTTTTCTGTTTTCC 59.870 43.478 0.00 0.00 42.19 3.13
202 203 3.380320 CCGACCAGTTTTTCTGTTTTCCT 59.620 43.478 0.00 0.00 42.19 3.36
203 204 4.577283 CCGACCAGTTTTTCTGTTTTCCTA 59.423 41.667 0.00 0.00 42.19 2.94
204 205 5.240844 CCGACCAGTTTTTCTGTTTTCCTAT 59.759 40.000 0.00 0.00 42.19 2.57
205 206 6.371389 CGACCAGTTTTTCTGTTTTCCTATC 58.629 40.000 0.00 0.00 42.19 2.08
206 207 6.567891 CGACCAGTTTTTCTGTTTTCCTATCC 60.568 42.308 0.00 0.00 42.19 2.59
207 208 6.133356 ACCAGTTTTTCTGTTTTCCTATCCA 58.867 36.000 0.00 0.00 42.19 3.41
208 209 6.609616 ACCAGTTTTTCTGTTTTCCTATCCAA 59.390 34.615 0.00 0.00 42.19 3.53
209 210 7.125053 ACCAGTTTTTCTGTTTTCCTATCCAAA 59.875 33.333 0.00 0.00 42.19 3.28
210 211 7.438160 CCAGTTTTTCTGTTTTCCTATCCAAAC 59.562 37.037 0.00 0.00 42.19 2.93
211 212 7.167468 CAGTTTTTCTGTTTTCCTATCCAAACG 59.833 37.037 0.00 0.00 39.17 3.60
212 213 6.702716 TTTTCTGTTTTCCTATCCAAACGT 57.297 33.333 0.00 0.00 35.93 3.99
213 214 7.804843 TTTTCTGTTTTCCTATCCAAACGTA 57.195 32.000 0.00 0.00 35.93 3.57
214 215 7.804843 TTTCTGTTTTCCTATCCAAACGTAA 57.195 32.000 0.00 0.00 35.93 3.18
215 216 6.790285 TCTGTTTTCCTATCCAAACGTAAC 57.210 37.500 0.00 0.00 35.93 2.50
216 217 6.527423 TCTGTTTTCCTATCCAAACGTAACT 58.473 36.000 0.00 0.00 35.93 2.24
217 218 6.993902 TCTGTTTTCCTATCCAAACGTAACTT 59.006 34.615 0.00 0.00 35.93 2.66
218 219 7.499895 TCTGTTTTCCTATCCAAACGTAACTTT 59.500 33.333 0.00 0.00 35.93 2.66
219 220 7.998580 TGTTTTCCTATCCAAACGTAACTTTT 58.001 30.769 0.00 0.00 35.93 2.27
220 221 8.468399 TGTTTTCCTATCCAAACGTAACTTTTT 58.532 29.630 0.00 0.00 35.93 1.94
221 222 9.949174 GTTTTCCTATCCAAACGTAACTTTTTA 57.051 29.630 0.00 0.00 0.00 1.52
229 230 9.815936 ATCCAAACGTAACTTTTTATAAACTCG 57.184 29.630 0.00 0.52 0.00 4.18
230 231 8.825745 TCCAAACGTAACTTTTTATAAACTCGT 58.174 29.630 0.00 1.08 0.00 4.18
231 232 9.437045 CCAAACGTAACTTTTTATAAACTCGTT 57.563 29.630 0.00 4.65 38.95 3.85
248 249 8.461715 AAACTCGTTATTTACAAAACGTAACG 57.538 30.769 7.85 7.85 46.41 3.18
249 250 7.160633 ACTCGTTATTTACAAAACGTAACGT 57.839 32.000 12.47 0.00 46.41 3.99
250 251 8.276060 ACTCGTTATTTACAAAACGTAACGTA 57.724 30.769 12.47 1.49 46.41 3.57
251 252 8.747666 ACTCGTTATTTACAAAACGTAACGTAA 58.252 29.630 12.47 6.86 46.41 3.18
252 253 9.561464 CTCGTTATTTACAAAACGTAACGTAAA 57.439 29.630 14.77 14.77 46.41 2.01
253 254 9.901724 TCGTTATTTACAAAACGTAACGTAAAA 57.098 25.926 15.80 3.43 46.41 1.52
254 255 9.937965 CGTTATTTACAAAACGTAACGTAAAAC 57.062 29.630 15.80 11.41 42.57 2.43
268 269 4.827304 CGTAAAACGGGGTTTCCTAAAA 57.173 40.909 0.00 0.00 38.08 1.52
269 270 5.180367 CGTAAAACGGGGTTTCCTAAAAA 57.820 39.130 0.00 0.00 38.08 1.94
270 271 5.771469 CGTAAAACGGGGTTTCCTAAAAAT 58.229 37.500 0.00 0.00 38.08 1.82
271 272 5.858049 CGTAAAACGGGGTTTCCTAAAAATC 59.142 40.000 0.00 0.00 38.08 2.17
272 273 5.873146 AAAACGGGGTTTCCTAAAAATCA 57.127 34.783 0.00 0.00 34.43 2.57
273 274 5.462530 AAACGGGGTTTCCTAAAAATCAG 57.537 39.130 0.00 0.00 28.86 2.90
274 275 2.823747 ACGGGGTTTCCTAAAAATCAGC 59.176 45.455 0.00 0.00 0.00 4.26
275 276 3.089284 CGGGGTTTCCTAAAAATCAGCT 58.911 45.455 0.00 0.00 0.00 4.24
276 277 4.263594 ACGGGGTTTCCTAAAAATCAGCTA 60.264 41.667 0.00 0.00 0.00 3.32
277 278 4.703093 CGGGGTTTCCTAAAAATCAGCTAA 59.297 41.667 0.00 0.00 0.00 3.09
278 279 5.184287 CGGGGTTTCCTAAAAATCAGCTAAA 59.816 40.000 0.00 0.00 0.00 1.85
279 280 6.294843 CGGGGTTTCCTAAAAATCAGCTAAAA 60.295 38.462 0.00 0.00 0.00 1.52
280 281 7.446769 GGGGTTTCCTAAAAATCAGCTAAAAA 58.553 34.615 0.00 0.00 0.00 1.94
281 282 7.386848 GGGGTTTCCTAAAAATCAGCTAAAAAC 59.613 37.037 0.00 0.00 0.00 2.43
282 283 8.148351 GGGTTTCCTAAAAATCAGCTAAAAACT 58.852 33.333 0.00 0.00 0.00 2.66
283 284 9.193133 GGTTTCCTAAAAATCAGCTAAAAACTC 57.807 33.333 0.00 0.00 0.00 3.01
284 285 8.902735 GTTTCCTAAAAATCAGCTAAAAACTCG 58.097 33.333 0.00 0.00 0.00 4.18
285 286 7.739498 TCCTAAAAATCAGCTAAAAACTCGT 57.261 32.000 0.00 0.00 0.00 4.18
286 287 8.161699 TCCTAAAAATCAGCTAAAAACTCGTT 57.838 30.769 0.00 0.00 0.00 3.85
287 288 8.626526 TCCTAAAAATCAGCTAAAAACTCGTTT 58.373 29.630 0.00 0.00 0.00 3.60
288 289 9.244799 CCTAAAAATCAGCTAAAAACTCGTTTT 57.755 29.630 2.12 2.12 43.88 2.43
290 291 8.926715 AAAAATCAGCTAAAAACTCGTTTTCT 57.073 26.923 8.09 0.00 41.45 2.52
297 298 9.704098 CAGCTAAAAACTCGTTTTCTATAATCC 57.296 33.333 8.09 0.00 41.45 3.01
298 299 9.668497 AGCTAAAAACTCGTTTTCTATAATCCT 57.332 29.630 8.09 0.00 41.45 3.24
303 304 7.460751 AACTCGTTTTCTATAATCCTAACGC 57.539 36.000 0.00 0.00 38.47 4.84
304 305 6.803642 ACTCGTTTTCTATAATCCTAACGCT 58.196 36.000 0.00 0.00 38.47 5.07
305 306 7.934457 ACTCGTTTTCTATAATCCTAACGCTA 58.066 34.615 0.00 0.00 38.47 4.26
306 307 8.408601 ACTCGTTTTCTATAATCCTAACGCTAA 58.591 33.333 0.00 0.00 38.47 3.09
307 308 9.408069 CTCGTTTTCTATAATCCTAACGCTAAT 57.592 33.333 0.00 0.00 38.47 1.73
308 309 9.403110 TCGTTTTCTATAATCCTAACGCTAATC 57.597 33.333 0.00 0.00 38.47 1.75
309 310 9.188588 CGTTTTCTATAATCCTAACGCTAATCA 57.811 33.333 0.00 0.00 33.17 2.57
311 312 9.485206 TTTTCTATAATCCTAACGCTAATCACC 57.515 33.333 0.00 0.00 0.00 4.02
312 313 6.849502 TCTATAATCCTAACGCTAATCACCG 58.150 40.000 0.00 0.00 0.00 4.94
313 314 2.150397 ATCCTAACGCTAATCACCGC 57.850 50.000 0.00 0.00 0.00 5.68
314 315 1.108776 TCCTAACGCTAATCACCGCT 58.891 50.000 0.00 0.00 0.00 5.52
315 316 2.300433 TCCTAACGCTAATCACCGCTA 58.700 47.619 0.00 0.00 0.00 4.26
316 317 2.889045 TCCTAACGCTAATCACCGCTAT 59.111 45.455 0.00 0.00 0.00 2.97
317 318 3.057736 TCCTAACGCTAATCACCGCTATC 60.058 47.826 0.00 0.00 0.00 2.08
318 319 2.150397 AACGCTAATCACCGCTATCC 57.850 50.000 0.00 0.00 0.00 2.59
319 320 1.037493 ACGCTAATCACCGCTATCCA 58.963 50.000 0.00 0.00 0.00 3.41
320 321 1.411246 ACGCTAATCACCGCTATCCAA 59.589 47.619 0.00 0.00 0.00 3.53
321 322 2.159014 ACGCTAATCACCGCTATCCAAA 60.159 45.455 0.00 0.00 0.00 3.28
322 323 2.221055 CGCTAATCACCGCTATCCAAAC 59.779 50.000 0.00 0.00 0.00 2.93
323 324 3.202906 GCTAATCACCGCTATCCAAACA 58.797 45.455 0.00 0.00 0.00 2.83
324 325 3.625764 GCTAATCACCGCTATCCAAACAA 59.374 43.478 0.00 0.00 0.00 2.83
325 326 4.495844 GCTAATCACCGCTATCCAAACAAC 60.496 45.833 0.00 0.00 0.00 3.32
326 327 1.434555 TCACCGCTATCCAAACAACG 58.565 50.000 0.00 0.00 0.00 4.10
327 328 0.179200 CACCGCTATCCAAACAACGC 60.179 55.000 0.00 0.00 0.00 4.84
328 329 1.303091 ACCGCTATCCAAACAACGCC 61.303 55.000 0.00 0.00 0.00 5.68
329 330 1.024579 CCGCTATCCAAACAACGCCT 61.025 55.000 0.00 0.00 0.00 5.52
330 331 1.647346 CGCTATCCAAACAACGCCTA 58.353 50.000 0.00 0.00 0.00 3.93
331 332 2.004017 CGCTATCCAAACAACGCCTAA 58.996 47.619 0.00 0.00 0.00 2.69
332 333 2.030457 CGCTATCCAAACAACGCCTAAG 59.970 50.000 0.00 0.00 0.00 2.18
333 334 2.354821 GCTATCCAAACAACGCCTAAGG 59.645 50.000 0.00 0.00 0.00 2.69
334 335 1.834188 ATCCAAACAACGCCTAAGGG 58.166 50.000 0.00 0.00 0.00 3.95
345 346 3.386543 CCTAAGGGCATCTCCAACG 57.613 57.895 0.00 0.00 36.21 4.10
346 347 0.815615 CCTAAGGGCATCTCCAACGC 60.816 60.000 0.00 0.00 36.21 4.84
347 348 0.179000 CTAAGGGCATCTCCAACGCT 59.821 55.000 0.00 0.00 36.21 5.07
348 349 1.412710 CTAAGGGCATCTCCAACGCTA 59.587 52.381 0.00 0.00 36.21 4.26
349 350 0.179000 AAGGGCATCTCCAACGCTAG 59.821 55.000 0.00 0.00 36.21 3.42
350 351 1.227674 GGGCATCTCCAACGCTAGG 60.228 63.158 0.00 0.00 36.21 3.02
351 352 1.686325 GGGCATCTCCAACGCTAGGA 61.686 60.000 0.00 0.00 36.21 2.94
355 356 2.105128 CTCCAACGCTAGGAGCCG 59.895 66.667 5.58 0.00 45.51 5.52
356 357 3.432051 CTCCAACGCTAGGAGCCGG 62.432 68.421 0.00 0.00 45.51 6.13
368 369 2.115480 AGCCGGCGCTAGGATAGA 59.885 61.111 23.20 0.00 46.08 1.98
369 370 1.530891 AGCCGGCGCTAGGATAGAA 60.531 57.895 23.20 0.00 46.08 2.10
370 371 1.113517 AGCCGGCGCTAGGATAGAAA 61.114 55.000 23.20 0.00 46.08 2.52
371 372 0.037232 GCCGGCGCTAGGATAGAAAT 60.037 55.000 22.97 0.00 42.77 2.17
372 373 1.997669 CCGGCGCTAGGATAGAAATC 58.002 55.000 15.65 0.00 42.77 2.17
386 387 3.099267 AGAAATCCTGACCGATTAGCG 57.901 47.619 0.00 0.00 40.47 4.26
398 399 3.928727 CGATTAGCGGTTATACCCTCA 57.071 47.619 0.00 0.00 33.75 3.86
399 400 4.247267 CGATTAGCGGTTATACCCTCAA 57.753 45.455 0.00 0.00 33.75 3.02
400 401 4.624015 CGATTAGCGGTTATACCCTCAAA 58.376 43.478 0.00 0.00 33.75 2.69
401 402 5.235516 CGATTAGCGGTTATACCCTCAAAT 58.764 41.667 0.00 0.00 33.75 2.32
402 403 5.699458 CGATTAGCGGTTATACCCTCAAATT 59.301 40.000 0.00 0.00 33.75 1.82
403 404 6.128634 CGATTAGCGGTTATACCCTCAAATTC 60.129 42.308 0.00 0.00 33.75 2.17
404 405 4.772886 AGCGGTTATACCCTCAAATTCT 57.227 40.909 0.00 0.00 33.75 2.40
405 406 4.451900 AGCGGTTATACCCTCAAATTCTG 58.548 43.478 0.00 0.00 33.75 3.02
406 407 3.564225 GCGGTTATACCCTCAAATTCTGG 59.436 47.826 0.00 0.00 33.75 3.86
407 408 4.685030 GCGGTTATACCCTCAAATTCTGGA 60.685 45.833 0.00 0.00 33.75 3.86
408 409 5.057149 CGGTTATACCCTCAAATTCTGGAG 58.943 45.833 0.00 0.00 33.75 3.86
409 410 5.396436 CGGTTATACCCTCAAATTCTGGAGT 60.396 44.000 0.00 0.00 33.75 3.85
410 411 6.056236 GGTTATACCCTCAAATTCTGGAGTC 58.944 44.000 0.00 0.00 30.04 3.36
411 412 6.352737 GGTTATACCCTCAAATTCTGGAGTCA 60.353 42.308 0.00 0.00 30.04 3.41
412 413 3.425162 ACCCTCAAATTCTGGAGTCAC 57.575 47.619 0.00 0.00 0.00 3.67
413 414 2.040412 ACCCTCAAATTCTGGAGTCACC 59.960 50.000 0.00 0.00 39.54 4.02
414 415 2.619074 CCCTCAAATTCTGGAGTCACCC 60.619 54.545 0.00 0.00 38.00 4.61
415 416 2.350522 CTCAAATTCTGGAGTCACCCG 58.649 52.381 0.00 0.00 38.00 5.28
416 417 1.697432 TCAAATTCTGGAGTCACCCGT 59.303 47.619 0.00 0.00 38.00 5.28
417 418 1.806542 CAAATTCTGGAGTCACCCGTG 59.193 52.381 0.00 0.00 38.00 4.94
418 419 0.324943 AATTCTGGAGTCACCCGTGG 59.675 55.000 0.00 0.00 38.00 4.94
419 420 2.185310 ATTCTGGAGTCACCCGTGGC 62.185 60.000 0.00 0.00 38.00 5.01
420 421 3.625897 CTGGAGTCACCCGTGGCA 61.626 66.667 1.79 0.00 37.73 4.92
421 422 2.927856 TGGAGTCACCCGTGGCAT 60.928 61.111 1.79 0.00 37.73 4.40
422 423 2.125106 GGAGTCACCCGTGGCATC 60.125 66.667 1.79 0.00 37.73 3.91
423 424 2.509336 GAGTCACCCGTGGCATCG 60.509 66.667 1.79 0.00 37.73 3.84
444 445 1.441311 CCAATATTTGGTGCCGGGC 59.559 57.895 13.32 13.32 45.93 6.13
445 446 1.065600 CAATATTTGGTGCCGGGCG 59.934 57.895 15.40 0.00 0.00 6.13
446 447 2.781158 AATATTTGGTGCCGGGCGC 61.781 57.895 24.06 24.06 38.45 6.53
447 448 3.714487 ATATTTGGTGCCGGGCGCT 62.714 57.895 29.65 14.24 39.23 5.92
448 449 3.929334 TATTTGGTGCCGGGCGCTT 62.929 57.895 29.65 15.59 39.23 4.68
512 513 2.833794 CAGCCAGTTATTAGCGCCTTA 58.166 47.619 2.29 0.00 0.00 2.69
536 537 4.752879 GCCCAGCGTTGCGTAGGA 62.753 66.667 0.00 0.00 0.00 2.94
540 541 4.430765 AGCGTTGCGTAGGACGGG 62.431 66.667 0.70 0.00 42.82 5.28
600 601 9.784680 TCTTTTGTCTATAAGCGTCTAAGTAAG 57.215 33.333 0.00 0.00 0.00 2.34
632 633 4.481368 TGAACGTGCCCTAATTACTCAT 57.519 40.909 0.00 0.00 0.00 2.90
690 691 1.085893 CTGTCACCGTGCATGCATTA 58.914 50.000 25.64 4.98 0.00 1.90
764 765 1.756430 TGCATTGCGCCTTAATACCA 58.244 45.000 4.18 0.00 41.33 3.25
767 768 2.554032 GCATTGCGCCTTAATACCATCT 59.446 45.455 4.18 0.00 32.94 2.90
936 942 1.661463 AGATCAGGCCCTTGAGTCAA 58.339 50.000 5.25 5.25 0.00 3.18
1013 2235 1.229625 TCTCCATGGAGCAGTGGGT 60.230 57.895 33.39 0.00 41.71 4.51
1073 2301 3.995705 CTCCTTCTCTTCAAGCTCAACAG 59.004 47.826 0.00 0.00 0.00 3.16
1184 2413 2.863153 GCTCATGCACCGTGTCAC 59.137 61.111 0.00 0.00 39.41 3.67
1283 2513 4.459089 GGAGGCTGCCCGTGAGAC 62.459 72.222 16.57 0.00 35.76 3.36
1300 2530 2.356913 CCATGCGGACACACGACA 60.357 61.111 0.00 0.00 35.47 4.35
1828 3073 2.008400 TGGAGGAAGGAGAGGACCTAA 58.992 52.381 0.00 0.00 39.62 2.69
1829 3074 2.385765 TGGAGGAAGGAGAGGACCTAAA 59.614 50.000 0.00 0.00 39.62 1.85
1833 3078 3.276307 AGGAAGGAGAGGACCTAAAGGAT 59.724 47.826 2.23 0.00 39.62 3.24
1970 3428 3.968265 AGCAGTTATACTTTGGCCACAT 58.032 40.909 3.88 0.00 0.00 3.21
2036 3564 5.400066 TTGGAGATTAATCACGAGTCACA 57.600 39.130 17.56 1.38 0.00 3.58
2334 4503 7.389803 TTTTTCTTGACTTCACACAGAATCA 57.610 32.000 0.00 0.00 35.25 2.57
2348 5841 9.515020 TCACACAGAATCAAAGAATTGTTAAAC 57.485 29.630 0.00 0.00 37.79 2.01
2429 5925 6.245408 ACAATCCAAAACTGCCTAGAATACA 58.755 36.000 0.00 0.00 0.00 2.29
2660 6156 4.161189 ACTCGTCATCAAGGAGACAATGAT 59.839 41.667 2.10 0.00 41.48 2.45
2975 6471 1.077625 ACTTCGACTGGGAGCTCCT 59.922 57.895 31.36 13.11 36.20 3.69
3254 8662 0.108709 TGCTGCGCCCATCAATTTTC 60.109 50.000 4.18 0.00 0.00 2.29
3469 9229 7.434764 CAAGTATCGACTTAAAGTGTGTAACG 58.565 38.462 0.00 0.00 44.39 3.18
3494 9254 8.975439 CGAAACAACTGTAGTATAACTTCACTT 58.025 33.333 0.00 0.00 0.00 3.16
3721 9487 6.094048 ACAGTGGCTGTAGCATAAACAATAAG 59.906 38.462 6.18 0.00 43.46 1.73
3740 9506 3.113260 AGAACTGGACTTAGCACACAC 57.887 47.619 0.00 0.00 0.00 3.82
3761 9527 7.231722 ACACACATAAAAATACAGGGCTTGTAA 59.768 33.333 13.74 0.00 45.00 2.41
3930 9696 3.853487 TCGCCAGCGAGGATGCAT 61.853 61.111 11.27 0.00 44.01 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.443407 CTCTCGGCCGTGGATGAAT 59.557 57.895 27.15 0.00 0.00 2.57
3 4 2.892640 CTCTCGGCCGTGGATGAA 59.107 61.111 27.15 5.12 0.00 2.57
4 5 3.838271 GCTCTCGGCCGTGGATGA 61.838 66.667 27.15 14.89 34.27 2.92
5 6 4.147449 TGCTCTCGGCCGTGGATG 62.147 66.667 27.15 16.63 40.92 3.51
6 7 3.842923 CTGCTCTCGGCCGTGGAT 61.843 66.667 27.15 0.00 40.92 3.41
13 14 2.442272 TACTCCCCTGCTCTCGGC 60.442 66.667 0.00 0.00 42.22 5.54
14 15 2.128507 GGTACTCCCCTGCTCTCGG 61.129 68.421 0.00 0.00 0.00 4.63
15 16 2.482333 CGGTACTCCCCTGCTCTCG 61.482 68.421 0.00 0.00 0.00 4.04
16 17 2.128507 CCGGTACTCCCCTGCTCTC 61.129 68.421 0.00 0.00 0.00 3.20
17 18 2.042843 CCGGTACTCCCCTGCTCT 60.043 66.667 0.00 0.00 0.00 4.09
18 19 2.363925 ACCGGTACTCCCCTGCTC 60.364 66.667 4.49 0.00 0.00 4.26
19 20 2.683933 CACCGGTACTCCCCTGCT 60.684 66.667 6.87 0.00 0.00 4.24
20 21 3.001406 ACACCGGTACTCCCCTGC 61.001 66.667 6.87 0.00 0.00 4.85
21 22 1.605058 CTGACACCGGTACTCCCCTG 61.605 65.000 6.87 0.00 0.00 4.45
22 23 1.305046 CTGACACCGGTACTCCCCT 60.305 63.158 6.87 0.00 0.00 4.79
23 24 3.015312 GCTGACACCGGTACTCCCC 62.015 68.421 6.87 0.00 0.00 4.81
24 25 2.577593 GCTGACACCGGTACTCCC 59.422 66.667 6.87 0.00 0.00 4.30
25 26 2.181021 CGCTGACACCGGTACTCC 59.819 66.667 6.87 0.00 0.00 3.85
26 27 1.136984 CTCGCTGACACCGGTACTC 59.863 63.158 6.87 5.52 0.00 2.59
27 28 2.991076 GCTCGCTGACACCGGTACT 61.991 63.158 6.87 0.00 0.00 2.73
28 29 2.506438 GCTCGCTGACACCGGTAC 60.506 66.667 6.87 5.24 0.00 3.34
29 30 4.111016 CGCTCGCTGACACCGGTA 62.111 66.667 6.87 0.00 0.00 4.02
33 34 4.803426 CCTCCGCTCGCTGACACC 62.803 72.222 0.00 0.00 0.00 4.16
34 35 3.691744 CTCCTCCGCTCGCTGACAC 62.692 68.421 0.00 0.00 0.00 3.67
35 36 3.443925 CTCCTCCGCTCGCTGACA 61.444 66.667 0.00 0.00 0.00 3.58
36 37 4.200283 CCTCCTCCGCTCGCTGAC 62.200 72.222 0.00 0.00 0.00 3.51
37 38 3.938637 TTCCTCCTCCGCTCGCTGA 62.939 63.158 0.00 0.00 0.00 4.26
38 39 2.691674 GATTCCTCCTCCGCTCGCTG 62.692 65.000 0.00 0.00 0.00 5.18
39 40 2.443016 ATTCCTCCTCCGCTCGCT 60.443 61.111 0.00 0.00 0.00 4.93
40 41 2.028337 GATTCCTCCTCCGCTCGC 59.972 66.667 0.00 0.00 0.00 5.03
41 42 2.333225 CGATTCCTCCTCCGCTCG 59.667 66.667 0.00 0.00 0.00 5.03
42 43 1.801309 CTCCGATTCCTCCTCCGCTC 61.801 65.000 0.00 0.00 0.00 5.03
43 44 1.830408 CTCCGATTCCTCCTCCGCT 60.830 63.158 0.00 0.00 0.00 5.52
44 45 2.731374 CTCCGATTCCTCCTCCGC 59.269 66.667 0.00 0.00 0.00 5.54
45 46 2.203771 CCCTCCGATTCCTCCTCCG 61.204 68.421 0.00 0.00 0.00 4.63
46 47 1.839296 CCCCTCCGATTCCTCCTCC 60.839 68.421 0.00 0.00 0.00 4.30
47 48 1.116536 GTCCCCTCCGATTCCTCCTC 61.117 65.000 0.00 0.00 0.00 3.71
48 49 1.075151 GTCCCCTCCGATTCCTCCT 60.075 63.158 0.00 0.00 0.00 3.69
49 50 2.141448 GGTCCCCTCCGATTCCTCC 61.141 68.421 0.00 0.00 0.00 4.30
50 51 1.382695 TGGTCCCCTCCGATTCCTC 60.383 63.158 0.00 0.00 0.00 3.71
51 52 1.383248 CTGGTCCCCTCCGATTCCT 60.383 63.158 0.00 0.00 0.00 3.36
52 53 3.108288 GCTGGTCCCCTCCGATTCC 62.108 68.421 0.00 0.00 0.00 3.01
53 54 1.910580 TTGCTGGTCCCCTCCGATTC 61.911 60.000 0.00 0.00 0.00 2.52
54 55 1.915078 CTTGCTGGTCCCCTCCGATT 61.915 60.000 0.00 0.00 0.00 3.34
55 56 2.285368 TTGCTGGTCCCCTCCGAT 60.285 61.111 0.00 0.00 0.00 4.18
56 57 3.003173 CTTGCTGGTCCCCTCCGA 61.003 66.667 0.00 0.00 0.00 4.55
57 58 3.003173 TCTTGCTGGTCCCCTCCG 61.003 66.667 0.00 0.00 0.00 4.63
58 59 2.671682 GTCTTGCTGGTCCCCTCC 59.328 66.667 0.00 0.00 0.00 4.30
59 60 2.266055 CGTCTTGCTGGTCCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
60 61 2.203788 TCGTCTTGCTGGTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
61 62 2.047179 GTCGTCTTGCTGGTCCCC 60.047 66.667 0.00 0.00 0.00 4.81
62 63 1.374758 CTGTCGTCTTGCTGGTCCC 60.375 63.158 0.00 0.00 0.00 4.46
63 64 0.667792 GTCTGTCGTCTTGCTGGTCC 60.668 60.000 0.00 0.00 0.00 4.46
64 65 0.315568 AGTCTGTCGTCTTGCTGGTC 59.684 55.000 0.00 0.00 0.00 4.02
65 66 0.753262 AAGTCTGTCGTCTTGCTGGT 59.247 50.000 0.00 0.00 0.00 4.00
66 67 1.143305 CAAGTCTGTCGTCTTGCTGG 58.857 55.000 0.00 0.00 35.42 4.85
67 68 1.143305 CCAAGTCTGTCGTCTTGCTG 58.857 55.000 0.00 0.00 39.47 4.41
68 69 1.040646 TCCAAGTCTGTCGTCTTGCT 58.959 50.000 0.00 0.00 39.47 3.91
69 70 1.795286 CTTCCAAGTCTGTCGTCTTGC 59.205 52.381 0.00 0.00 39.47 4.01
70 71 3.053455 GTCTTCCAAGTCTGTCGTCTTG 58.947 50.000 0.00 0.00 40.19 3.02
71 72 2.287668 CGTCTTCCAAGTCTGTCGTCTT 60.288 50.000 0.00 0.00 0.00 3.01
72 73 1.267261 CGTCTTCCAAGTCTGTCGTCT 59.733 52.381 0.00 0.00 0.00 4.18
73 74 1.687628 CGTCTTCCAAGTCTGTCGTC 58.312 55.000 0.00 0.00 0.00 4.20
74 75 0.318784 GCGTCTTCCAAGTCTGTCGT 60.319 55.000 0.00 0.00 0.00 4.34
75 76 1.009389 GGCGTCTTCCAAGTCTGTCG 61.009 60.000 0.00 0.00 0.00 4.35
76 77 0.033504 TGGCGTCTTCCAAGTCTGTC 59.966 55.000 0.00 0.00 32.18 3.51
77 78 0.687354 ATGGCGTCTTCCAAGTCTGT 59.313 50.000 0.00 0.00 39.96 3.41
78 79 1.081892 CATGGCGTCTTCCAAGTCTG 58.918 55.000 0.00 0.00 39.96 3.51
79 80 0.036010 CCATGGCGTCTTCCAAGTCT 60.036 55.000 0.00 0.00 39.96 3.24
80 81 1.648467 GCCATGGCGTCTTCCAAGTC 61.648 60.000 23.48 0.00 39.96 3.01
81 82 1.675641 GCCATGGCGTCTTCCAAGT 60.676 57.895 23.48 0.00 39.96 3.16
82 83 3.190878 GCCATGGCGTCTTCCAAG 58.809 61.111 23.48 0.00 39.96 3.61
92 93 0.977108 TTCCCCAAATCAGCCATGGC 60.977 55.000 30.12 30.12 42.33 4.40
93 94 1.483415 CTTTCCCCAAATCAGCCATGG 59.517 52.381 7.63 7.63 0.00 3.66
94 95 2.093869 CACTTTCCCCAAATCAGCCATG 60.094 50.000 0.00 0.00 0.00 3.66
95 96 2.181975 CACTTTCCCCAAATCAGCCAT 58.818 47.619 0.00 0.00 0.00 4.40
96 97 1.146774 TCACTTTCCCCAAATCAGCCA 59.853 47.619 0.00 0.00 0.00 4.75
97 98 1.821136 CTCACTTTCCCCAAATCAGCC 59.179 52.381 0.00 0.00 0.00 4.85
98 99 2.751806 CTCTCACTTTCCCCAAATCAGC 59.248 50.000 0.00 0.00 0.00 4.26
99 100 3.755378 CACTCTCACTTTCCCCAAATCAG 59.245 47.826 0.00 0.00 0.00 2.90
100 101 3.394274 TCACTCTCACTTTCCCCAAATCA 59.606 43.478 0.00 0.00 0.00 2.57
101 102 4.006319 CTCACTCTCACTTTCCCCAAATC 58.994 47.826 0.00 0.00 0.00 2.17
102 103 3.395941 ACTCACTCTCACTTTCCCCAAAT 59.604 43.478 0.00 0.00 0.00 2.32
103 104 2.777692 ACTCACTCTCACTTTCCCCAAA 59.222 45.455 0.00 0.00 0.00 3.28
104 105 2.368875 GACTCACTCTCACTTTCCCCAA 59.631 50.000 0.00 0.00 0.00 4.12
105 106 1.971357 GACTCACTCTCACTTTCCCCA 59.029 52.381 0.00 0.00 0.00 4.96
106 107 1.971357 TGACTCACTCTCACTTTCCCC 59.029 52.381 0.00 0.00 0.00 4.81
107 108 2.608261 CGTGACTCACTCTCACTTTCCC 60.608 54.545 7.58 0.00 36.63 3.97
108 109 2.608261 CCGTGACTCACTCTCACTTTCC 60.608 54.545 7.58 0.00 36.63 3.13
109 110 2.608261 CCCGTGACTCACTCTCACTTTC 60.608 54.545 7.58 0.00 36.63 2.62
110 111 1.341531 CCCGTGACTCACTCTCACTTT 59.658 52.381 7.58 0.00 36.63 2.66
111 112 0.962489 CCCGTGACTCACTCTCACTT 59.038 55.000 7.58 0.00 36.63 3.16
112 113 0.110678 TCCCGTGACTCACTCTCACT 59.889 55.000 7.58 0.00 36.63 3.41
113 114 0.523966 CTCCCGTGACTCACTCTCAC 59.476 60.000 7.58 0.00 35.61 3.51
114 115 0.609406 CCTCCCGTGACTCACTCTCA 60.609 60.000 7.58 0.00 31.34 3.27
115 116 0.322636 TCCTCCCGTGACTCACTCTC 60.323 60.000 7.58 0.00 31.34 3.20
116 117 0.322997 CTCCTCCCGTGACTCACTCT 60.323 60.000 7.58 0.00 31.34 3.24
117 118 0.322636 TCTCCTCCCGTGACTCACTC 60.323 60.000 7.58 0.00 31.34 3.51
118 119 0.112606 TTCTCCTCCCGTGACTCACT 59.887 55.000 7.58 0.00 31.34 3.41
119 120 0.966920 TTTCTCCTCCCGTGACTCAC 59.033 55.000 0.00 0.00 0.00 3.51
120 121 1.618837 CTTTTCTCCTCCCGTGACTCA 59.381 52.381 0.00 0.00 0.00 3.41
121 122 1.066787 CCTTTTCTCCTCCCGTGACTC 60.067 57.143 0.00 0.00 0.00 3.36
122 123 0.977395 CCTTTTCTCCTCCCGTGACT 59.023 55.000 0.00 0.00 0.00 3.41
123 124 0.974383 TCCTTTTCTCCTCCCGTGAC 59.026 55.000 0.00 0.00 0.00 3.67
124 125 1.724545 TTCCTTTTCTCCTCCCGTGA 58.275 50.000 0.00 0.00 0.00 4.35
125 126 2.152016 GTTTCCTTTTCTCCTCCCGTG 58.848 52.381 0.00 0.00 0.00 4.94
126 127 1.772453 TGTTTCCTTTTCTCCTCCCGT 59.228 47.619 0.00 0.00 0.00 5.28
127 128 2.427506 CTGTTTCCTTTTCTCCTCCCG 58.572 52.381 0.00 0.00 0.00 5.14
128 129 2.163509 GCTGTTTCCTTTTCTCCTCCC 58.836 52.381 0.00 0.00 0.00 4.30
129 130 2.163509 GGCTGTTTCCTTTTCTCCTCC 58.836 52.381 0.00 0.00 0.00 4.30
130 131 2.163509 GGGCTGTTTCCTTTTCTCCTC 58.836 52.381 0.00 0.00 0.00 3.71
131 132 1.499007 TGGGCTGTTTCCTTTTCTCCT 59.501 47.619 0.00 0.00 0.00 3.69
132 133 1.613925 GTGGGCTGTTTCCTTTTCTCC 59.386 52.381 0.00 0.00 0.00 3.71
133 134 2.294512 CAGTGGGCTGTTTCCTTTTCTC 59.705 50.000 0.00 0.00 37.92 2.87
134 135 2.310538 CAGTGGGCTGTTTCCTTTTCT 58.689 47.619 0.00 0.00 37.92 2.52
135 136 1.341209 CCAGTGGGCTGTTTCCTTTTC 59.659 52.381 0.00 0.00 41.02 2.29
136 137 1.063266 TCCAGTGGGCTGTTTCCTTTT 60.063 47.619 9.92 0.00 41.02 2.27
137 138 0.555769 TCCAGTGGGCTGTTTCCTTT 59.444 50.000 9.92 0.00 41.02 3.11
138 139 0.111253 CTCCAGTGGGCTGTTTCCTT 59.889 55.000 9.92 0.00 41.02 3.36
139 140 1.763770 CTCCAGTGGGCTGTTTCCT 59.236 57.895 9.92 0.00 41.02 3.36
140 141 1.303643 CCTCCAGTGGGCTGTTTCC 60.304 63.158 9.92 0.00 41.02 3.13
141 142 1.303643 CCCTCCAGTGGGCTGTTTC 60.304 63.158 9.92 0.00 40.84 2.78
142 143 2.846532 CCCTCCAGTGGGCTGTTT 59.153 61.111 9.92 0.00 40.84 2.83
154 155 3.264964 TGTACCTTGTTTGGATACCCTCC 59.735 47.826 0.00 0.00 45.19 4.30
155 156 4.563140 TGTACCTTGTTTGGATACCCTC 57.437 45.455 0.00 0.00 0.00 4.30
156 157 4.538490 TCATGTACCTTGTTTGGATACCCT 59.462 41.667 0.00 0.00 0.00 4.34
157 158 4.638865 GTCATGTACCTTGTTTGGATACCC 59.361 45.833 0.00 0.00 0.00 3.69
158 159 4.638865 GGTCATGTACCTTGTTTGGATACC 59.361 45.833 6.98 0.00 45.75 2.73
159 160 5.813080 GGTCATGTACCTTGTTTGGATAC 57.187 43.478 6.98 0.00 45.75 2.24
171 172 2.467566 AAACTGGTCGGTCATGTACC 57.532 50.000 0.00 0.00 45.77 3.34
172 173 4.062991 AGAAAAACTGGTCGGTCATGTAC 58.937 43.478 0.00 0.00 0.00 2.90
173 174 4.062293 CAGAAAAACTGGTCGGTCATGTA 58.938 43.478 0.00 0.00 42.39 2.29
174 175 2.878406 CAGAAAAACTGGTCGGTCATGT 59.122 45.455 0.00 0.00 42.39 3.21
175 176 3.315191 AACAGAAAAACTGGTCGGTCATG 59.685 43.478 0.00 0.00 43.93 3.07
176 177 3.551846 AACAGAAAAACTGGTCGGTCAT 58.448 40.909 0.00 0.00 43.93 3.06
177 178 2.993937 AACAGAAAAACTGGTCGGTCA 58.006 42.857 0.00 0.00 43.93 4.02
178 179 4.348656 GAAAACAGAAAAACTGGTCGGTC 58.651 43.478 0.00 0.00 46.91 4.79
179 180 3.129813 GGAAAACAGAAAAACTGGTCGGT 59.870 43.478 0.00 0.00 46.91 4.69
180 181 3.380320 AGGAAAACAGAAAAACTGGTCGG 59.620 43.478 0.00 0.00 46.91 4.79
181 182 4.632538 AGGAAAACAGAAAAACTGGTCG 57.367 40.909 0.00 0.00 46.91 4.79
182 183 6.264518 TGGATAGGAAAACAGAAAAACTGGTC 59.735 38.462 0.00 0.00 46.91 4.02
186 187 7.147966 ACGTTTGGATAGGAAAACAGAAAAACT 60.148 33.333 0.00 0.00 36.31 2.66
187 188 6.976349 ACGTTTGGATAGGAAAACAGAAAAAC 59.024 34.615 0.00 0.00 36.31 2.43
188 189 7.102847 ACGTTTGGATAGGAAAACAGAAAAA 57.897 32.000 0.00 0.00 36.31 1.94
189 190 6.702716 ACGTTTGGATAGGAAAACAGAAAA 57.297 33.333 0.00 0.00 36.31 2.29
190 191 7.499895 AGTTACGTTTGGATAGGAAAACAGAAA 59.500 33.333 0.00 0.00 36.31 2.52
191 192 6.993902 AGTTACGTTTGGATAGGAAAACAGAA 59.006 34.615 0.00 0.00 36.31 3.02
192 193 6.527423 AGTTACGTTTGGATAGGAAAACAGA 58.473 36.000 0.00 0.00 36.31 3.41
193 194 6.796705 AGTTACGTTTGGATAGGAAAACAG 57.203 37.500 0.00 0.00 36.31 3.16
194 195 7.571080 AAAGTTACGTTTGGATAGGAAAACA 57.429 32.000 0.00 0.00 36.31 2.83
195 196 8.861033 AAAAAGTTACGTTTGGATAGGAAAAC 57.139 30.769 0.00 0.00 33.80 2.43
203 204 9.815936 CGAGTTTATAAAAAGTTACGTTTGGAT 57.184 29.630 0.00 0.00 0.00 3.41
204 205 8.825745 ACGAGTTTATAAAAAGTTACGTTTGGA 58.174 29.630 0.00 0.00 29.21 3.53
205 206 8.992287 ACGAGTTTATAAAAAGTTACGTTTGG 57.008 30.769 0.00 0.00 29.21 3.28
222 223 9.561464 CGTTACGTTTTGTAAATAACGAGTTTA 57.439 29.630 14.48 0.00 46.84 2.01
223 224 8.113675 ACGTTACGTTTTGTAAATAACGAGTTT 58.886 29.630 18.08 0.00 46.84 2.66
224 225 7.617557 ACGTTACGTTTTGTAAATAACGAGTT 58.382 30.769 18.08 0.00 46.84 3.01
225 226 7.160633 ACGTTACGTTTTGTAAATAACGAGT 57.839 32.000 18.08 6.76 46.84 4.18
226 227 9.561464 TTTACGTTACGTTTTGTAAATAACGAG 57.439 29.630 17.42 6.25 46.84 4.18
227 228 9.901724 TTTTACGTTACGTTTTGTAAATAACGA 57.098 25.926 17.42 3.12 46.84 3.85
229 230 9.937965 CGTTTTACGTTACGTTTTGTAAATAAC 57.062 29.630 17.42 6.76 44.36 1.89
230 231 9.148460 CCGTTTTACGTTACGTTTTGTAAATAA 57.852 29.630 17.42 0.00 44.36 1.40
231 232 7.794349 CCCGTTTTACGTTACGTTTTGTAAATA 59.206 33.333 17.42 0.00 44.36 1.40
232 233 6.630840 CCCGTTTTACGTTACGTTTTGTAAAT 59.369 34.615 17.42 0.00 44.36 1.40
233 234 5.960105 CCCGTTTTACGTTACGTTTTGTAAA 59.040 36.000 17.42 7.21 44.36 2.01
234 235 5.493735 CCCGTTTTACGTTACGTTTTGTAA 58.506 37.500 17.42 0.11 40.58 2.41
235 236 4.025647 CCCCGTTTTACGTTACGTTTTGTA 60.026 41.667 17.42 0.00 40.58 2.41
236 237 3.242576 CCCCGTTTTACGTTACGTTTTGT 60.243 43.478 17.42 0.00 40.58 2.83
237 238 3.242576 ACCCCGTTTTACGTTACGTTTTG 60.243 43.478 17.42 2.19 40.58 2.44
238 239 2.939756 ACCCCGTTTTACGTTACGTTTT 59.060 40.909 17.42 0.00 40.58 2.43
239 240 2.556257 ACCCCGTTTTACGTTACGTTT 58.444 42.857 17.42 0.00 40.58 3.60
240 241 2.232756 ACCCCGTTTTACGTTACGTT 57.767 45.000 17.42 0.01 40.58 3.99
241 242 2.232756 AACCCCGTTTTACGTTACGT 57.767 45.000 16.31 16.31 40.58 3.57
242 243 2.096466 GGAAACCCCGTTTTACGTTACG 60.096 50.000 2.19 2.19 40.58 3.18
243 244 3.138304 AGGAAACCCCGTTTTACGTTAC 58.862 45.455 0.00 0.00 40.58 2.50
244 245 3.483808 AGGAAACCCCGTTTTACGTTA 57.516 42.857 0.00 0.00 40.58 3.18
245 246 2.346766 AGGAAACCCCGTTTTACGTT 57.653 45.000 0.00 0.00 40.58 3.99
246 247 3.483808 TTAGGAAACCCCGTTTTACGT 57.516 42.857 0.00 0.00 40.58 3.57
247 248 4.827304 TTTTAGGAAACCCCGTTTTACG 57.173 40.909 0.00 0.00 42.11 3.18
248 249 6.747125 TGATTTTTAGGAAACCCCGTTTTAC 58.253 36.000 0.00 0.00 40.87 2.01
249 250 6.517027 GCTGATTTTTAGGAAACCCCGTTTTA 60.517 38.462 0.00 0.00 40.87 1.52
250 251 5.740803 GCTGATTTTTAGGAAACCCCGTTTT 60.741 40.000 0.00 0.00 40.87 2.43
251 252 4.262292 GCTGATTTTTAGGAAACCCCGTTT 60.262 41.667 0.00 0.00 40.87 3.60
252 253 3.257375 GCTGATTTTTAGGAAACCCCGTT 59.743 43.478 0.00 0.00 40.87 4.44
253 254 2.823747 GCTGATTTTTAGGAAACCCCGT 59.176 45.455 0.00 0.00 40.87 5.28
254 255 3.089284 AGCTGATTTTTAGGAAACCCCG 58.911 45.455 0.00 0.00 40.87 5.73
255 256 6.599356 TTTAGCTGATTTTTAGGAAACCCC 57.401 37.500 0.00 0.00 0.00 4.95
256 257 8.148351 AGTTTTTAGCTGATTTTTAGGAAACCC 58.852 33.333 0.00 0.00 0.00 4.11
257 258 9.193133 GAGTTTTTAGCTGATTTTTAGGAAACC 57.807 33.333 0.00 0.00 0.00 3.27
258 259 8.902735 CGAGTTTTTAGCTGATTTTTAGGAAAC 58.097 33.333 0.00 0.00 0.00 2.78
259 260 8.626526 ACGAGTTTTTAGCTGATTTTTAGGAAA 58.373 29.630 0.00 0.00 0.00 3.13
260 261 8.161699 ACGAGTTTTTAGCTGATTTTTAGGAA 57.838 30.769 0.00 0.00 0.00 3.36
261 262 7.739498 ACGAGTTTTTAGCTGATTTTTAGGA 57.261 32.000 0.00 0.00 0.00 2.94
262 263 8.797266 AAACGAGTTTTTAGCTGATTTTTAGG 57.203 30.769 0.00 0.00 0.00 2.69
265 266 8.926715 AGAAAACGAGTTTTTAGCTGATTTTT 57.073 26.923 14.18 0.00 42.26 1.94
271 272 9.704098 GGATTATAGAAAACGAGTTTTTAGCTG 57.296 33.333 14.18 0.00 42.26 4.24
272 273 9.668497 AGGATTATAGAAAACGAGTTTTTAGCT 57.332 29.630 14.18 9.87 42.26 3.32
277 278 8.385858 GCGTTAGGATTATAGAAAACGAGTTTT 58.614 33.333 13.06 13.06 44.59 2.43
278 279 7.763071 AGCGTTAGGATTATAGAAAACGAGTTT 59.237 33.333 8.52 0.00 41.48 2.66
279 280 7.263496 AGCGTTAGGATTATAGAAAACGAGTT 58.737 34.615 8.52 0.00 41.48 3.01
280 281 6.803642 AGCGTTAGGATTATAGAAAACGAGT 58.196 36.000 8.52 0.00 41.48 4.18
281 282 8.792831 TTAGCGTTAGGATTATAGAAAACGAG 57.207 34.615 8.52 0.00 41.48 4.18
282 283 9.403110 GATTAGCGTTAGGATTATAGAAAACGA 57.597 33.333 8.52 0.00 41.48 3.85
283 284 9.188588 TGATTAGCGTTAGGATTATAGAAAACG 57.811 33.333 0.00 0.00 41.77 3.60
285 286 9.485206 GGTGATTAGCGTTAGGATTATAGAAAA 57.515 33.333 0.00 0.00 0.00 2.29
286 287 7.811236 CGGTGATTAGCGTTAGGATTATAGAAA 59.189 37.037 0.28 0.00 42.48 2.52
287 288 7.310664 CGGTGATTAGCGTTAGGATTATAGAA 58.689 38.462 0.28 0.00 42.48 2.10
288 289 6.849502 CGGTGATTAGCGTTAGGATTATAGA 58.150 40.000 0.28 0.00 42.48 1.98
302 303 3.202906 TGTTTGGATAGCGGTGATTAGC 58.797 45.455 0.00 0.00 0.00 3.09
303 304 4.260212 CGTTGTTTGGATAGCGGTGATTAG 60.260 45.833 0.00 0.00 0.00 1.73
304 305 3.619483 CGTTGTTTGGATAGCGGTGATTA 59.381 43.478 0.00 0.00 0.00 1.75
305 306 2.418628 CGTTGTTTGGATAGCGGTGATT 59.581 45.455 0.00 0.00 0.00 2.57
306 307 2.006888 CGTTGTTTGGATAGCGGTGAT 58.993 47.619 0.00 0.00 0.00 3.06
307 308 1.434555 CGTTGTTTGGATAGCGGTGA 58.565 50.000 0.00 0.00 0.00 4.02
308 309 0.179200 GCGTTGTTTGGATAGCGGTG 60.179 55.000 0.00 0.00 0.00 4.94
309 310 1.303091 GGCGTTGTTTGGATAGCGGT 61.303 55.000 0.00 0.00 0.00 5.68
310 311 1.024579 AGGCGTTGTTTGGATAGCGG 61.025 55.000 0.00 0.00 0.00 5.52
311 312 1.647346 TAGGCGTTGTTTGGATAGCG 58.353 50.000 0.00 0.00 0.00 4.26
312 313 2.354821 CCTTAGGCGTTGTTTGGATAGC 59.645 50.000 0.00 0.00 0.00 2.97
313 314 2.943033 CCCTTAGGCGTTGTTTGGATAG 59.057 50.000 0.00 0.00 0.00 2.08
314 315 2.993937 CCCTTAGGCGTTGTTTGGATA 58.006 47.619 0.00 0.00 0.00 2.59
315 316 1.834188 CCCTTAGGCGTTGTTTGGAT 58.166 50.000 0.00 0.00 0.00 3.41
316 317 3.332706 CCCTTAGGCGTTGTTTGGA 57.667 52.632 0.00 0.00 0.00 3.53
327 328 0.815615 GCGTTGGAGATGCCCTTAGG 60.816 60.000 0.00 0.00 34.03 2.69
328 329 0.179000 AGCGTTGGAGATGCCCTTAG 59.821 55.000 0.00 0.00 41.38 2.18
329 330 1.412710 CTAGCGTTGGAGATGCCCTTA 59.587 52.381 0.00 0.00 41.38 2.69
330 331 0.179000 CTAGCGTTGGAGATGCCCTT 59.821 55.000 0.00 0.00 41.38 3.95
331 332 1.690219 CCTAGCGTTGGAGATGCCCT 61.690 60.000 0.00 0.00 41.38 5.19
332 333 1.227674 CCTAGCGTTGGAGATGCCC 60.228 63.158 0.00 0.00 41.38 5.36
333 334 1.823295 TCCTAGCGTTGGAGATGCC 59.177 57.895 0.00 0.00 41.38 4.40
339 340 3.458163 CCGGCTCCTAGCGTTGGA 61.458 66.667 0.00 0.00 43.62 3.53
352 353 0.037232 ATTTCTATCCTAGCGCCGGC 60.037 55.000 19.07 19.07 40.37 6.13
353 354 1.404315 GGATTTCTATCCTAGCGCCGG 60.404 57.143 2.29 5.15 45.88 6.13
354 355 1.997669 GGATTTCTATCCTAGCGCCG 58.002 55.000 2.29 0.00 45.88 6.46
360 361 8.968915 CGCTAATCGGTCAGGATTTCTATCCTA 61.969 44.444 6.38 0.00 45.57 2.94
361 362 8.237204 CGCTAATCGGTCAGGATTTCTATCCT 62.237 46.154 0.83 0.83 46.90 3.24
362 363 6.131264 CGCTAATCGGTCAGGATTTCTATCC 61.131 48.000 0.00 0.00 41.64 2.59
363 364 4.859798 CGCTAATCGGTCAGGATTTCTATC 59.140 45.833 0.00 0.00 37.74 2.08
364 365 4.810790 CGCTAATCGGTCAGGATTTCTAT 58.189 43.478 0.00 0.00 37.74 1.98
365 366 4.238761 CGCTAATCGGTCAGGATTTCTA 57.761 45.455 0.00 0.00 37.74 2.10
366 367 3.099267 CGCTAATCGGTCAGGATTTCT 57.901 47.619 0.00 0.00 37.74 2.52
378 379 3.928727 TGAGGGTATAACCGCTAATCG 57.071 47.619 12.13 0.00 39.83 3.34
379 380 6.935208 AGAATTTGAGGGTATAACCGCTAATC 59.065 38.462 17.64 12.23 39.83 1.75
380 381 6.710744 CAGAATTTGAGGGTATAACCGCTAAT 59.289 38.462 13.01 13.01 39.83 1.73
381 382 6.053005 CAGAATTTGAGGGTATAACCGCTAA 58.947 40.000 12.13 10.79 39.83 3.09
382 383 5.454187 CCAGAATTTGAGGGTATAACCGCTA 60.454 44.000 12.13 0.89 39.83 4.26
383 384 4.451900 CAGAATTTGAGGGTATAACCGCT 58.548 43.478 12.13 0.00 39.83 5.52
384 385 3.564225 CCAGAATTTGAGGGTATAACCGC 59.436 47.826 3.15 3.15 39.83 5.68
385 386 5.031066 TCCAGAATTTGAGGGTATAACCG 57.969 43.478 0.00 0.00 39.83 4.44
386 387 6.002653 ACTCCAGAATTTGAGGGTATAACC 57.997 41.667 0.00 0.00 37.60 2.85
387 388 6.539103 GTGACTCCAGAATTTGAGGGTATAAC 59.461 42.308 5.81 0.00 32.80 1.89
388 389 6.352737 GGTGACTCCAGAATTTGAGGGTATAA 60.353 42.308 5.81 0.00 35.97 0.98
389 390 5.130477 GGTGACTCCAGAATTTGAGGGTATA 59.870 44.000 5.81 0.00 35.97 1.47
390 391 4.080299 GGTGACTCCAGAATTTGAGGGTAT 60.080 45.833 5.81 0.00 35.97 2.73
391 392 3.263425 GGTGACTCCAGAATTTGAGGGTA 59.737 47.826 5.81 0.00 35.97 3.69
392 393 2.040412 GGTGACTCCAGAATTTGAGGGT 59.960 50.000 5.81 0.00 35.97 4.34
393 394 2.619074 GGGTGACTCCAGAATTTGAGGG 60.619 54.545 0.00 0.00 38.11 4.30
394 395 2.716217 GGGTGACTCCAGAATTTGAGG 58.284 52.381 0.00 0.00 38.11 3.86
395 396 2.289694 ACGGGTGACTCCAGAATTTGAG 60.290 50.000 0.47 0.00 38.11 3.02
396 397 1.697432 ACGGGTGACTCCAGAATTTGA 59.303 47.619 0.47 0.00 38.11 2.69
397 398 1.806542 CACGGGTGACTCCAGAATTTG 59.193 52.381 0.47 0.00 38.11 2.32
398 399 1.271379 CCACGGGTGACTCCAGAATTT 60.271 52.381 0.00 0.00 38.11 1.82
399 400 0.324943 CCACGGGTGACTCCAGAATT 59.675 55.000 0.00 0.00 38.11 2.17
400 401 1.983224 CCACGGGTGACTCCAGAAT 59.017 57.895 0.00 0.00 38.11 2.40
401 402 2.879233 GCCACGGGTGACTCCAGAA 61.879 63.158 0.00 0.00 38.11 3.02
402 403 3.311110 GCCACGGGTGACTCCAGA 61.311 66.667 0.00 0.00 38.11 3.86
403 404 2.859273 GATGCCACGGGTGACTCCAG 62.859 65.000 0.00 0.00 38.11 3.86
404 405 2.927856 ATGCCACGGGTGACTCCA 60.928 61.111 0.00 0.00 38.11 3.86
405 406 2.125106 GATGCCACGGGTGACTCC 60.125 66.667 0.00 0.00 0.00 3.85
406 407 2.509336 CGATGCCACGGGTGACTC 60.509 66.667 0.00 0.00 0.00 3.36
427 428 1.065600 CGCCCGGCACCAAATATTG 59.934 57.895 10.77 0.00 0.00 1.90
428 429 2.781158 GCGCCCGGCACCAAATATT 61.781 57.895 10.77 0.00 42.87 1.28
429 430 3.216292 GCGCCCGGCACCAAATAT 61.216 61.111 10.77 0.00 42.87 1.28
455 456 4.042809 TGCTACCTTCCCATGAGAGAAAAA 59.957 41.667 0.00 0.00 0.00 1.94
456 457 3.587061 TGCTACCTTCCCATGAGAGAAAA 59.413 43.478 0.00 0.00 0.00 2.29
457 458 3.181329 TGCTACCTTCCCATGAGAGAAA 58.819 45.455 0.00 0.00 0.00 2.52
458 459 2.832838 TGCTACCTTCCCATGAGAGAA 58.167 47.619 0.00 0.00 0.00 2.87
459 460 2.550277 TGCTACCTTCCCATGAGAGA 57.450 50.000 0.00 0.00 0.00 3.10
460 461 3.853355 AATGCTACCTTCCCATGAGAG 57.147 47.619 0.00 0.00 0.00 3.20
461 462 4.721776 ACTAAATGCTACCTTCCCATGAGA 59.278 41.667 0.00 0.00 0.00 3.27
491 492 0.815615 AGGCGCTAATAACTGGCTGC 60.816 55.000 7.64 0.00 35.74 5.25
493 494 3.553828 TTAAGGCGCTAATAACTGGCT 57.446 42.857 7.64 0.00 39.09 4.75
494 495 4.830826 AATTAAGGCGCTAATAACTGGC 57.169 40.909 7.64 0.00 0.00 4.85
520 521 2.813908 GTCCTACGCAACGCTGGG 60.814 66.667 0.78 0.78 41.20 4.45
536 537 7.916914 ATTAAAGAATAATATAAGCGCCCGT 57.083 32.000 2.29 0.00 0.00 5.28
574 575 9.784680 CTTACTTAGACGCTTATAGACAAAAGA 57.215 33.333 0.00 0.00 0.00 2.52
575 576 8.533153 GCTTACTTAGACGCTTATAGACAAAAG 58.467 37.037 0.00 0.00 0.00 2.27
600 601 3.737172 ACGTTCAATGCAGGGCGC 61.737 61.111 0.00 0.00 42.89 6.53
616 617 5.520376 AATTGCATGAGTAATTAGGGCAC 57.480 39.130 0.00 0.00 38.12 5.01
632 633 3.563808 GGGAGTAATGCGTCATAATTGCA 59.436 43.478 0.00 0.00 43.67 4.08
936 942 2.551459 GTGATGCTGCACTTTGAGTCTT 59.449 45.455 3.57 0.00 35.91 3.01
1013 2235 3.741245 AGAGAAGGCAGAGGTAGTACA 57.259 47.619 2.06 0.00 0.00 2.90
1278 2508 1.005037 GTGTGTCCGCATGGTCTCA 60.005 57.895 0.00 0.00 36.30 3.27
1283 2513 1.695893 GATGTCGTGTGTCCGCATGG 61.696 60.000 0.00 0.00 0.00 3.66
1685 2921 2.526077 GTGTCGTGTCGCTGATGAATA 58.474 47.619 0.00 0.00 0.00 1.75
1828 3073 0.835941 ATCCTCAAGAGCGCATCCTT 59.164 50.000 11.47 7.06 0.00 3.36
1829 3074 1.342819 GTATCCTCAAGAGCGCATCCT 59.657 52.381 11.47 0.00 0.00 3.24
1833 3078 1.226974 GCGTATCCTCAAGAGCGCA 60.227 57.895 11.47 0.00 46.00 6.09
2036 3564 2.731691 ATCAACTGCGAGGTGGCGTT 62.732 55.000 2.07 0.00 32.64 4.84
2320 4489 9.734620 TTAACAATTCTTTGATTCTGTGTGAAG 57.265 29.630 0.00 0.00 35.84 3.02
2359 5852 7.907389 TCCAGTAGCAAATCCTCGAATAATAT 58.093 34.615 0.00 0.00 0.00 1.28
2429 5925 9.037737 CGATTTGATGAAATTTGGAATTGCTAT 57.962 29.630 0.00 0.00 31.58 2.97
2491 5987 4.352039 CATTGAAGAGTGATTGCTGATGC 58.648 43.478 0.00 0.00 40.20 3.91
2975 6471 1.826384 ATCTGGTCTCACCCCTCCCA 61.826 60.000 0.00 0.00 37.50 4.37
3292 8700 2.402564 AGACCTGGGTAGTGATCATGG 58.597 52.381 0.00 0.00 0.00 3.66
3438 8850 7.275779 CACACTTTAAGTCGATACTTGCTACAT 59.724 37.037 0.00 0.00 45.63 2.29
3721 9487 2.833794 TGTGTGTGCTAAGTCCAGTTC 58.166 47.619 0.00 0.00 0.00 3.01
3740 9506 8.695456 AGGATTTACAAGCCCTGTATTTTTATG 58.305 33.333 0.00 0.00 40.27 1.90
3930 9696 1.695242 TGAAGAGAACAAGCCCGGTTA 59.305 47.619 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.