Multiple sequence alignment - TraesCS1D01G243400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G243400 chr1D 100.000 5186 0 0 1 5186 333504830 333499645 0.000000e+00 9577.0
1 TraesCS1D01G243400 chr1D 88.710 62 7 0 4328 4389 59879144 59879205 5.570000e-10 76.8
2 TraesCS1D01G243400 chr1D 86.765 68 8 1 4328 4395 145941649 145941583 2.000000e-09 75.0
3 TraesCS1D01G243400 chr1B 95.842 3680 119 18 590 4247 449395587 449391920 0.000000e+00 5917.0
4 TraesCS1D01G243400 chr1B 93.341 886 32 9 4315 5184 449391761 449390887 0.000000e+00 1284.0
5 TraesCS1D01G243400 chr1A 95.212 3530 143 13 728 4247 431784442 431780929 0.000000e+00 5559.0
6 TraesCS1D01G243400 chr1A 92.812 960 21 15 4243 5183 431780874 431779944 0.000000e+00 1347.0
7 TraesCS1D01G243400 chr1A 91.935 62 5 0 4328 4389 58289642 58289703 2.570000e-13 87.9
8 TraesCS1D01G243400 chr1A 91.935 62 5 0 600 661 431784713 431784652 2.570000e-13 87.9
9 TraesCS1D01G243400 chr3D 92.308 117 8 1 4982 5097 191315594 191315710 1.160000e-36 165.0
10 TraesCS1D01G243400 chr3D 84.211 76 10 1 410 485 587512942 587513015 7.200000e-09 73.1
11 TraesCS1D01G243400 chr2D 88.158 76 5 3 417 489 62613786 62613860 2.570000e-13 87.9
12 TraesCS1D01G243400 chr2B 87.838 74 7 2 417 489 15714477 15714405 9.250000e-13 86.1
13 TraesCS1D01G243400 chr2B 87.838 74 7 2 417 489 15850670 15850598 9.250000e-13 86.1
14 TraesCS1D01G243400 chr2B 87.838 74 7 2 417 489 15949284 15949212 9.250000e-13 86.1
15 TraesCS1D01G243400 chr7A 90.323 62 6 0 4328 4389 652541850 652541911 1.200000e-11 82.4
16 TraesCS1D01G243400 chr7A 84.932 73 8 3 4328 4400 391906646 391906577 2.590000e-08 71.3
17 TraesCS1D01G243400 chr6B 89.062 64 7 0 388 451 472712432 472712369 4.300000e-11 80.5
18 TraesCS1D01G243400 chr7B 86.301 73 7 3 4328 4400 297400583 297400652 5.570000e-10 76.8
19 TraesCS1D01G243400 chr7B 84.932 73 7 4 416 487 557248785 557248854 2.590000e-08 71.3
20 TraesCS1D01G243400 chr5B 87.879 66 7 1 4324 4389 328373868 328373932 5.570000e-10 76.8
21 TraesCS1D01G243400 chr2A 87.879 66 7 1 4328 4393 29150973 29151037 5.570000e-10 76.8
22 TraesCS1D01G243400 chr2A 85.333 75 7 3 417 488 702949434 702949507 2.000000e-09 75.0
23 TraesCS1D01G243400 chr3A 91.667 48 2 2 454 500 720146862 720146816 1.210000e-06 65.8
24 TraesCS1D01G243400 chr3A 91.667 48 2 2 454 500 720175869 720175823 1.210000e-06 65.8
25 TraesCS1D01G243400 chr6D 91.489 47 2 2 413 457 464054140 464054186 4.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G243400 chr1D 333499645 333504830 5185 True 9577.0 9577 100.000000 1 5186 1 chr1D.!!$R2 5185
1 TraesCS1D01G243400 chr1B 449390887 449395587 4700 True 3600.5 5917 94.591500 590 5184 2 chr1B.!!$R1 4594
2 TraesCS1D01G243400 chr1A 431779944 431784713 4769 True 2331.3 5559 93.319667 600 5183 3 chr1A.!!$R1 4583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.030369 GTGGTGCTACGGGAGTATCG 59.970 60.000 0.00 0.00 45.62 2.92 F
62 63 0.035152 TGCTGGATTGGAGCATCGTT 60.035 50.000 0.00 0.00 41.56 3.85 F
89 90 0.098200 CGAAGTATCGTCGGTCTGCA 59.902 55.000 0.00 0.00 44.06 4.41 F
527 528 0.109342 TCGGTAGGACTACGGATCCC 59.891 60.000 6.06 0.00 39.45 3.85 F
528 529 0.110104 CGGTAGGACTACGGATCCCT 59.890 60.000 6.06 0.00 38.25 4.20 F
1762 1915 0.110419 GGAGATGCGAGACGAGATCG 60.110 60.000 0.00 0.00 46.33 3.69 F
2090 2246 0.181350 GGATCAGGTGATGGTGTCCC 59.819 60.000 0.00 0.00 34.37 4.46 F
2125 2281 0.318699 CGAGCTCGTGTTGGAAGACA 60.319 55.000 27.79 0.00 34.11 3.41 F
2781 2937 0.338467 TCTTCAAGATCCCCGGGAGA 59.662 55.000 26.32 18.63 34.05 3.71 F
2841 2997 4.865761 GACTACATCGCCGCCGCA 62.866 66.667 0.00 0.00 34.03 5.69 F
4179 4335 4.803426 GGTCCAGCGACGAGGCAG 62.803 72.222 0.00 0.00 40.17 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1533 0.239347 CCTTCTGCCTGAAACGCTTG 59.761 55.000 0.00 0.00 33.79 4.01 R
1814 1967 0.453390 CTTCTTGCGCCTGAATTCCC 59.547 55.000 4.18 0.00 0.00 3.97 R
1914 2067 1.573829 GATCCACGTTTTCTGCGGCA 61.574 55.000 1.29 1.29 0.00 5.69 R
2236 2392 1.208293 GGGCAGATTCTTCCTCTCGTT 59.792 52.381 2.30 0.00 0.00 3.85 R
2530 2686 3.490933 CCGTCCGTCATGTACTTGATCAT 60.491 47.826 13.92 0.00 0.00 2.45 R
3613 3769 0.545787 TCCTTGGGCCGGTAGAAGAA 60.546 55.000 1.90 0.00 0.00 2.52 R
3832 3988 0.248990 GAGCAGTGCTCGATCTCCAG 60.249 60.000 28.32 0.00 45.85 3.86 R
4041 4197 0.811616 CCTGCCGCATGTACTCCTTC 60.812 60.000 0.00 0.00 0.00 3.46 R
4171 4327 1.534235 AGGTTCAGGTCTGCCTCGT 60.534 57.895 0.00 0.00 44.97 4.18 R
4179 4335 5.175859 TGAAATATTGTCGAGGTTCAGGTC 58.824 41.667 0.00 0.00 0.00 3.85 R
5054 5350 3.700577 CGGCAAAAGACGCATCATT 57.299 47.368 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.735132 CACCGACATCCGCCGTGT 62.735 66.667 0.00 0.00 36.84 4.49
21 22 4.735132 ACCGACATCCGCCGTGTG 62.735 66.667 0.00 0.00 36.84 3.82
23 24 4.735132 CGACATCCGCCGTGTGGT 62.735 66.667 3.84 0.00 37.67 4.16
24 25 3.118454 GACATCCGCCGTGTGGTG 61.118 66.667 3.84 4.69 45.78 4.17
27 28 3.387091 ATCCGCCGTGTGGTGCTA 61.387 61.111 3.84 0.00 44.81 3.49
28 29 3.659089 ATCCGCCGTGTGGTGCTAC 62.659 63.158 3.84 0.00 44.81 3.58
33 34 2.126071 CGTGTGGTGCTACGGGAG 60.126 66.667 0.00 0.00 36.71 4.30
35 36 1.588824 CGTGTGGTGCTACGGGAGTA 61.589 60.000 0.00 0.00 46.17 2.59
36 37 0.822164 GTGTGGTGCTACGGGAGTAT 59.178 55.000 0.00 0.00 45.62 2.12
37 38 1.108776 TGTGGTGCTACGGGAGTATC 58.891 55.000 0.00 0.00 45.62 2.24
38 39 0.030369 GTGGTGCTACGGGAGTATCG 59.970 60.000 0.00 0.00 45.62 2.92
39 40 0.107066 TGGTGCTACGGGAGTATCGA 60.107 55.000 0.00 0.00 45.62 3.59
40 41 0.310232 GGTGCTACGGGAGTATCGAC 59.690 60.000 0.00 0.00 45.62 4.20
41 42 1.019673 GTGCTACGGGAGTATCGACA 58.980 55.000 0.00 0.00 45.62 4.35
42 43 1.002684 GTGCTACGGGAGTATCGACAG 60.003 57.143 0.00 0.00 45.62 3.51
43 44 1.307097 GCTACGGGAGTATCGACAGT 58.693 55.000 0.00 0.00 45.62 3.55
44 45 1.002684 GCTACGGGAGTATCGACAGTG 60.003 57.143 0.00 0.00 45.62 3.66
45 46 1.002684 CTACGGGAGTATCGACAGTGC 60.003 57.143 0.00 0.00 45.62 4.40
46 47 0.680280 ACGGGAGTATCGACAGTGCT 60.680 55.000 0.00 0.00 44.60 4.40
47 48 0.248661 CGGGAGTATCGACAGTGCTG 60.249 60.000 0.00 0.00 34.37 4.41
48 49 0.103208 GGGAGTATCGACAGTGCTGG 59.897 60.000 4.11 0.00 34.37 4.85
49 50 1.103803 GGAGTATCGACAGTGCTGGA 58.896 55.000 4.11 0.00 34.37 3.86
50 51 1.683917 GGAGTATCGACAGTGCTGGAT 59.316 52.381 4.11 1.01 34.37 3.41
51 52 2.101582 GGAGTATCGACAGTGCTGGATT 59.898 50.000 4.11 0.00 34.37 3.01
52 53 3.119291 GAGTATCGACAGTGCTGGATTG 58.881 50.000 4.11 0.00 34.19 2.67
53 54 2.159043 AGTATCGACAGTGCTGGATTGG 60.159 50.000 4.11 0.00 34.19 3.16
54 55 0.904649 ATCGACAGTGCTGGATTGGA 59.095 50.000 4.11 0.00 34.19 3.53
55 56 0.247460 TCGACAGTGCTGGATTGGAG 59.753 55.000 4.11 0.00 34.19 3.86
56 57 1.364626 CGACAGTGCTGGATTGGAGC 61.365 60.000 4.11 0.00 36.95 4.70
57 58 0.321919 GACAGTGCTGGATTGGAGCA 60.322 55.000 4.11 0.00 44.22 4.26
60 61 4.545929 TGCTGGATTGGAGCATCG 57.454 55.556 0.00 0.00 41.56 3.84
61 62 1.603842 TGCTGGATTGGAGCATCGT 59.396 52.632 0.00 0.00 41.56 3.73
62 63 0.035152 TGCTGGATTGGAGCATCGTT 60.035 50.000 0.00 0.00 41.56 3.85
63 64 0.379669 GCTGGATTGGAGCATCGTTG 59.620 55.000 0.00 0.00 36.40 4.10
64 65 1.019673 CTGGATTGGAGCATCGTTGG 58.980 55.000 0.00 0.00 34.37 3.77
65 66 0.394216 TGGATTGGAGCATCGTTGGG 60.394 55.000 0.00 0.00 34.37 4.12
66 67 1.728490 GGATTGGAGCATCGTTGGGC 61.728 60.000 0.00 0.00 34.37 5.36
67 68 1.728490 GATTGGAGCATCGTTGGGCC 61.728 60.000 0.00 0.00 34.37 5.80
68 69 2.497792 ATTGGAGCATCGTTGGGCCA 62.498 55.000 0.00 0.00 34.37 5.36
69 70 3.134127 GGAGCATCGTTGGGCCAC 61.134 66.667 5.23 0.00 34.37 5.01
70 71 3.134127 GAGCATCGTTGGGCCACC 61.134 66.667 5.23 0.00 37.24 4.61
73 74 2.359354 CATCGTTGGGCCACCGAA 60.359 61.111 29.77 13.67 40.75 4.30
74 75 2.046314 ATCGTTGGGCCACCGAAG 60.046 61.111 29.77 6.79 40.75 3.79
75 76 2.890766 ATCGTTGGGCCACCGAAGT 61.891 57.895 29.77 12.19 40.75 3.01
76 77 1.546589 ATCGTTGGGCCACCGAAGTA 61.547 55.000 29.77 7.73 40.75 2.24
77 78 1.078708 CGTTGGGCCACCGAAGTAT 60.079 57.895 19.65 0.00 40.75 2.12
78 79 1.087771 CGTTGGGCCACCGAAGTATC 61.088 60.000 19.65 0.00 40.75 2.24
88 89 2.856089 CGAAGTATCGTCGGTCTGC 58.144 57.895 0.00 0.00 44.06 4.26
89 90 0.098200 CGAAGTATCGTCGGTCTGCA 59.902 55.000 0.00 0.00 44.06 4.41
90 91 1.466866 CGAAGTATCGTCGGTCTGCAA 60.467 52.381 0.00 0.00 44.06 4.08
91 92 2.794981 CGAAGTATCGTCGGTCTGCAAT 60.795 50.000 0.00 0.00 44.06 3.56
92 93 2.209838 AGTATCGTCGGTCTGCAATG 57.790 50.000 0.00 0.00 0.00 2.82
93 94 1.202417 AGTATCGTCGGTCTGCAATGG 60.202 52.381 0.00 0.00 0.00 3.16
94 95 1.107945 TATCGTCGGTCTGCAATGGA 58.892 50.000 0.00 0.00 0.00 3.41
95 96 0.179100 ATCGTCGGTCTGCAATGGAG 60.179 55.000 0.00 0.00 0.00 3.86
96 97 2.456119 CGTCGGTCTGCAATGGAGC 61.456 63.158 0.00 0.00 0.00 4.70
97 98 1.375908 GTCGGTCTGCAATGGAGCA 60.376 57.895 0.00 0.00 43.35 4.26
98 99 1.375908 TCGGTCTGCAATGGAGCAC 60.376 57.895 0.00 0.00 40.11 4.40
99 100 2.743752 CGGTCTGCAATGGAGCACG 61.744 63.158 0.00 0.14 40.11 5.34
100 101 1.672356 GGTCTGCAATGGAGCACGT 60.672 57.895 0.00 0.00 40.11 4.49
101 102 1.639298 GGTCTGCAATGGAGCACGTC 61.639 60.000 0.00 0.00 40.11 4.34
102 103 1.737735 TCTGCAATGGAGCACGTCG 60.738 57.895 0.00 0.00 40.11 5.12
103 104 2.029288 CTGCAATGGAGCACGTCGT 61.029 57.895 0.00 0.00 40.11 4.34
104 105 1.959899 CTGCAATGGAGCACGTCGTC 61.960 60.000 0.00 0.00 40.11 4.20
105 106 3.071459 GCAATGGAGCACGTCGTCG 62.071 63.158 0.00 0.00 43.34 5.12
106 107 1.443702 CAATGGAGCACGTCGTCGA 60.444 57.895 9.47 0.00 40.62 4.20
107 108 0.802222 CAATGGAGCACGTCGTCGAT 60.802 55.000 9.47 0.00 40.62 3.59
108 109 0.802222 AATGGAGCACGTCGTCGATG 60.802 55.000 12.90 12.90 40.62 3.84
109 110 3.248171 GGAGCACGTCGTCGATGC 61.248 66.667 14.35 13.07 41.00 3.91
110 111 2.504026 GAGCACGTCGTCGATGCA 60.504 61.111 19.84 0.00 42.10 3.96
111 112 2.500442 GAGCACGTCGTCGATGCAG 61.500 63.158 19.84 11.99 42.10 4.41
112 113 4.196826 GCACGTCGTCGATGCAGC 62.197 66.667 14.35 14.30 40.68 5.25
113 114 2.504899 CACGTCGTCGATGCAGCT 60.505 61.111 14.35 0.00 40.62 4.24
114 115 2.202492 ACGTCGTCGATGCAGCTC 60.202 61.111 14.35 0.00 40.62 4.09
115 116 2.101185 CGTCGTCGATGCAGCTCT 59.899 61.111 0.00 0.00 39.71 4.09
116 117 1.936880 CGTCGTCGATGCAGCTCTC 60.937 63.158 0.00 0.00 39.71 3.20
117 118 1.936880 GTCGTCGATGCAGCTCTCG 60.937 63.158 0.00 10.62 36.25 4.04
118 119 3.318555 CGTCGATGCAGCTCTCGC 61.319 66.667 11.70 7.37 34.94 5.03
119 120 2.202663 GTCGATGCAGCTCTCGCA 60.203 61.111 11.70 0.00 44.94 5.10
120 121 1.807165 GTCGATGCAGCTCTCGCAA 60.807 57.895 11.70 0.00 43.84 4.85
121 122 1.079888 TCGATGCAGCTCTCGCAAA 60.080 52.632 11.70 0.00 43.84 3.68
122 123 0.670239 TCGATGCAGCTCTCGCAAAA 60.670 50.000 11.70 0.00 43.84 2.44
123 124 0.247576 CGATGCAGCTCTCGCAAAAG 60.248 55.000 0.00 0.00 43.84 2.27
124 125 0.522915 GATGCAGCTCTCGCAAAAGC 60.523 55.000 0.87 0.00 43.84 3.51
126 127 1.168407 TGCAGCTCTCGCAAAAGCTT 61.168 50.000 0.00 0.00 46.49 3.74
127 128 0.454117 GCAGCTCTCGCAAAAGCTTC 60.454 55.000 0.00 0.00 46.49 3.86
128 129 0.179230 CAGCTCTCGCAAAAGCTTCG 60.179 55.000 0.00 0.00 46.49 3.79
129 130 0.601311 AGCTCTCGCAAAAGCTTCGT 60.601 50.000 0.00 0.00 46.49 3.85
130 131 0.451792 GCTCTCGCAAAAGCTTCGTG 60.452 55.000 0.00 2.22 35.60 4.35
131 132 0.451792 CTCTCGCAAAAGCTTCGTGC 60.452 55.000 20.04 20.04 43.29 5.34
149 150 3.394800 CGTAGCAGTGCGAGTAACA 57.605 52.632 10.00 0.00 32.81 2.41
150 151 1.693467 CGTAGCAGTGCGAGTAACAA 58.307 50.000 10.00 0.00 32.81 2.83
151 152 1.649171 CGTAGCAGTGCGAGTAACAAG 59.351 52.381 10.00 0.00 32.81 3.16
152 153 1.993370 GTAGCAGTGCGAGTAACAAGG 59.007 52.381 10.00 0.00 0.00 3.61
153 154 0.679505 AGCAGTGCGAGTAACAAGGA 59.320 50.000 10.00 0.00 0.00 3.36
154 155 1.276421 AGCAGTGCGAGTAACAAGGAT 59.724 47.619 10.00 0.00 0.00 3.24
155 156 1.394917 GCAGTGCGAGTAACAAGGATG 59.605 52.381 0.00 0.00 0.00 3.51
156 157 2.930887 GCAGTGCGAGTAACAAGGATGA 60.931 50.000 0.00 0.00 0.00 2.92
157 158 3.525537 CAGTGCGAGTAACAAGGATGAT 58.474 45.455 0.00 0.00 0.00 2.45
158 159 3.308053 CAGTGCGAGTAACAAGGATGATG 59.692 47.826 0.00 0.00 0.00 3.07
159 160 2.609459 GTGCGAGTAACAAGGATGATGG 59.391 50.000 0.00 0.00 0.00 3.51
160 161 2.499693 TGCGAGTAACAAGGATGATGGA 59.500 45.455 0.00 0.00 0.00 3.41
161 162 3.126831 GCGAGTAACAAGGATGATGGAG 58.873 50.000 0.00 0.00 0.00 3.86
162 163 3.722147 CGAGTAACAAGGATGATGGAGG 58.278 50.000 0.00 0.00 0.00 4.30
163 164 3.471680 GAGTAACAAGGATGATGGAGGC 58.528 50.000 0.00 0.00 0.00 4.70
164 165 2.158900 AGTAACAAGGATGATGGAGGCG 60.159 50.000 0.00 0.00 0.00 5.52
165 166 0.620556 AACAAGGATGATGGAGGCGT 59.379 50.000 0.00 0.00 0.00 5.68
166 167 0.620556 ACAAGGATGATGGAGGCGTT 59.379 50.000 0.00 0.00 0.00 4.84
167 168 1.019673 CAAGGATGATGGAGGCGTTG 58.980 55.000 0.00 0.00 0.00 4.10
168 169 0.749454 AAGGATGATGGAGGCGTTGC 60.749 55.000 0.00 0.00 0.00 4.17
169 170 1.451927 GGATGATGGAGGCGTTGCA 60.452 57.895 0.00 0.00 0.00 4.08
170 171 1.442526 GGATGATGGAGGCGTTGCAG 61.443 60.000 0.00 0.00 0.00 4.41
171 172 0.462581 GATGATGGAGGCGTTGCAGA 60.463 55.000 0.00 0.00 0.00 4.26
172 173 0.745845 ATGATGGAGGCGTTGCAGAC 60.746 55.000 0.00 0.00 0.00 3.51
192 193 4.344865 GGGCGTGCTGGGAAGGAA 62.345 66.667 0.00 0.00 0.00 3.36
193 194 2.747855 GGCGTGCTGGGAAGGAAG 60.748 66.667 0.00 0.00 0.00 3.46
194 195 3.435186 GCGTGCTGGGAAGGAAGC 61.435 66.667 0.00 0.00 39.96 3.86
195 196 3.121030 CGTGCTGGGAAGGAAGCG 61.121 66.667 0.00 0.00 42.54 4.68
196 197 2.347490 GTGCTGGGAAGGAAGCGA 59.653 61.111 0.00 0.00 42.54 4.93
197 198 1.078143 GTGCTGGGAAGGAAGCGAT 60.078 57.895 0.00 0.00 42.54 4.58
198 199 0.178068 GTGCTGGGAAGGAAGCGATA 59.822 55.000 0.00 0.00 42.54 2.92
199 200 0.908910 TGCTGGGAAGGAAGCGATAA 59.091 50.000 0.00 0.00 42.54 1.75
200 201 1.300481 GCTGGGAAGGAAGCGATAAC 58.700 55.000 0.00 0.00 0.00 1.89
201 202 1.406887 GCTGGGAAGGAAGCGATAACA 60.407 52.381 0.00 0.00 0.00 2.41
202 203 2.746472 GCTGGGAAGGAAGCGATAACAT 60.746 50.000 0.00 0.00 0.00 2.71
203 204 2.874701 CTGGGAAGGAAGCGATAACATG 59.125 50.000 0.00 0.00 0.00 3.21
204 205 2.222027 GGGAAGGAAGCGATAACATGG 58.778 52.381 0.00 0.00 0.00 3.66
205 206 2.421529 GGGAAGGAAGCGATAACATGGT 60.422 50.000 0.00 0.00 0.00 3.55
206 207 2.872858 GGAAGGAAGCGATAACATGGTC 59.127 50.000 0.00 0.00 0.00 4.02
207 208 3.432326 GGAAGGAAGCGATAACATGGTCT 60.432 47.826 0.00 0.00 0.00 3.85
208 209 3.460857 AGGAAGCGATAACATGGTCTC 57.539 47.619 0.00 0.00 0.00 3.36
209 210 2.128035 GGAAGCGATAACATGGTCTCG 58.872 52.381 13.72 13.72 0.00 4.04
210 211 2.128035 GAAGCGATAACATGGTCTCGG 58.872 52.381 18.75 2.78 0.00 4.63
211 212 1.112113 AGCGATAACATGGTCTCGGT 58.888 50.000 16.38 16.38 37.06 4.69
212 213 1.202417 AGCGATAACATGGTCTCGGTG 60.202 52.381 20.53 0.00 39.99 4.94
213 214 1.470979 GCGATAACATGGTCTCGGTGT 60.471 52.381 18.75 0.00 0.00 4.16
214 215 2.193447 CGATAACATGGTCTCGGTGTG 58.807 52.381 10.49 0.00 0.00 3.82
215 216 2.159296 CGATAACATGGTCTCGGTGTGA 60.159 50.000 10.49 0.00 0.00 3.58
216 217 2.736144 TAACATGGTCTCGGTGTGAC 57.264 50.000 0.00 0.00 0.00 3.67
220 221 4.428845 GGTCTCGGTGTGACCCTA 57.571 61.111 6.76 0.00 46.01 3.53
221 222 2.897699 GGTCTCGGTGTGACCCTAT 58.102 57.895 6.76 0.00 46.01 2.57
222 223 0.745468 GGTCTCGGTGTGACCCTATC 59.255 60.000 6.76 0.00 46.01 2.08
223 224 1.471119 GTCTCGGTGTGACCCTATCA 58.529 55.000 0.00 0.00 33.75 2.15
224 225 2.032620 GTCTCGGTGTGACCCTATCAT 58.967 52.381 0.00 0.00 40.28 2.45
225 226 2.034812 GTCTCGGTGTGACCCTATCATC 59.965 54.545 0.00 0.00 40.28 2.92
226 227 2.031870 CTCGGTGTGACCCTATCATCA 58.968 52.381 0.00 0.00 40.28 3.07
227 228 2.430694 CTCGGTGTGACCCTATCATCAA 59.569 50.000 0.00 0.00 40.28 2.57
228 229 2.430694 TCGGTGTGACCCTATCATCAAG 59.569 50.000 0.00 0.00 40.28 3.02
229 230 2.483714 CGGTGTGACCCTATCATCAAGG 60.484 54.545 0.00 0.00 40.28 3.61
230 231 2.771943 GGTGTGACCCTATCATCAAGGA 59.228 50.000 0.00 0.00 40.28 3.36
231 232 3.392616 GGTGTGACCCTATCATCAAGGAT 59.607 47.826 0.00 0.00 40.28 3.24
232 233 4.141390 GGTGTGACCCTATCATCAAGGATT 60.141 45.833 0.00 0.00 40.28 3.01
233 234 5.071788 GGTGTGACCCTATCATCAAGGATTA 59.928 44.000 0.00 0.00 40.28 1.75
234 235 6.409234 GGTGTGACCCTATCATCAAGGATTAA 60.409 42.308 0.00 0.00 40.28 1.40
235 236 6.708054 GTGTGACCCTATCATCAAGGATTAAG 59.292 42.308 0.00 0.00 40.28 1.85
236 237 5.703130 GTGACCCTATCATCAAGGATTAAGC 59.297 44.000 0.00 0.00 40.28 3.09
237 238 4.899502 ACCCTATCATCAAGGATTAAGCG 58.100 43.478 0.00 0.00 36.08 4.68
238 239 4.256920 CCCTATCATCAAGGATTAAGCGG 58.743 47.826 0.00 0.00 36.08 5.52
239 240 4.020218 CCCTATCATCAAGGATTAAGCGGA 60.020 45.833 0.00 0.00 36.08 5.54
240 241 4.932200 CCTATCATCAAGGATTAAGCGGAC 59.068 45.833 0.00 0.00 36.08 4.79
241 242 3.194005 TCATCAAGGATTAAGCGGACC 57.806 47.619 0.00 0.00 0.00 4.46
242 243 2.503765 TCATCAAGGATTAAGCGGACCA 59.496 45.455 0.00 0.00 0.00 4.02
243 244 3.054728 TCATCAAGGATTAAGCGGACCAA 60.055 43.478 0.00 0.00 0.00 3.67
244 245 3.426787 TCAAGGATTAAGCGGACCAAA 57.573 42.857 0.00 0.00 0.00 3.28
245 246 3.963129 TCAAGGATTAAGCGGACCAAAT 58.037 40.909 0.00 0.00 0.00 2.32
246 247 4.340617 TCAAGGATTAAGCGGACCAAATT 58.659 39.130 0.00 0.00 0.00 1.82
247 248 5.502079 TCAAGGATTAAGCGGACCAAATTA 58.498 37.500 0.00 0.00 0.00 1.40
248 249 5.588648 TCAAGGATTAAGCGGACCAAATTAG 59.411 40.000 0.00 0.00 0.00 1.73
249 250 5.367945 AGGATTAAGCGGACCAAATTAGA 57.632 39.130 0.00 0.00 0.00 2.10
250 251 5.941788 AGGATTAAGCGGACCAAATTAGAT 58.058 37.500 0.00 0.00 0.00 1.98
251 252 6.365520 AGGATTAAGCGGACCAAATTAGATT 58.634 36.000 0.00 0.00 0.00 2.40
252 253 7.514721 AGGATTAAGCGGACCAAATTAGATTA 58.485 34.615 0.00 0.00 0.00 1.75
253 254 8.164070 AGGATTAAGCGGACCAAATTAGATTAT 58.836 33.333 0.00 0.00 0.00 1.28
254 255 8.237267 GGATTAAGCGGACCAAATTAGATTATG 58.763 37.037 0.00 0.00 0.00 1.90
255 256 5.438761 AAGCGGACCAAATTAGATTATGC 57.561 39.130 0.00 0.00 0.00 3.14
256 257 3.498397 AGCGGACCAAATTAGATTATGCG 59.502 43.478 0.00 0.00 0.00 4.73
257 258 3.250040 GCGGACCAAATTAGATTATGCGT 59.750 43.478 0.00 0.00 0.00 5.24
258 259 4.449743 GCGGACCAAATTAGATTATGCGTA 59.550 41.667 0.00 0.00 0.00 4.42
259 260 5.049954 GCGGACCAAATTAGATTATGCGTAA 60.050 40.000 0.00 0.00 0.00 3.18
260 261 6.590357 CGGACCAAATTAGATTATGCGTAAG 58.410 40.000 4.43 0.00 43.44 2.34
261 262 6.202188 CGGACCAAATTAGATTATGCGTAAGT 59.798 38.462 4.43 0.00 41.68 2.24
262 263 7.383029 CGGACCAAATTAGATTATGCGTAAGTA 59.617 37.037 4.43 0.00 41.68 2.24
263 264 9.048446 GGACCAAATTAGATTATGCGTAAGTAA 57.952 33.333 4.43 5.35 41.68 2.24
266 267 9.659830 CCAAATTAGATTATGCGTAAGTAAACC 57.340 33.333 4.43 0.00 41.68 3.27
270 271 6.340537 AGATTATGCGTAAGTAAACCAACG 57.659 37.500 4.43 0.00 41.68 4.10
271 272 4.925061 TTATGCGTAAGTAAACCAACGG 57.075 40.909 0.00 0.00 41.68 4.44
272 273 0.867086 TGCGTAAGTAAACCAACGGC 59.133 50.000 6.88 0.00 41.68 5.68
273 274 1.150827 GCGTAAGTAAACCAACGGCT 58.849 50.000 6.88 0.00 41.68 5.52
274 275 1.136169 GCGTAAGTAAACCAACGGCTG 60.136 52.381 0.00 0.00 41.68 4.85
275 276 4.310115 GCGTAAGTAAACCAACGGCTGG 62.310 54.545 0.00 4.36 46.54 4.85
284 285 3.384816 CAACGGCTGGATATGCAGA 57.615 52.632 26.59 0.00 0.00 4.26
285 286 1.888215 CAACGGCTGGATATGCAGAT 58.112 50.000 26.59 9.07 0.00 2.90
286 287 1.534163 CAACGGCTGGATATGCAGATG 59.466 52.381 26.59 18.77 0.00 2.90
287 288 1.051008 ACGGCTGGATATGCAGATGA 58.949 50.000 26.59 0.00 0.00 2.92
288 289 1.001746 ACGGCTGGATATGCAGATGAG 59.998 52.381 26.59 15.39 0.00 2.90
289 290 1.451067 GGCTGGATATGCAGATGAGC 58.549 55.000 26.59 12.11 0.00 4.26
290 291 1.003349 GGCTGGATATGCAGATGAGCT 59.997 52.381 26.59 0.00 34.99 4.09
291 292 2.552591 GGCTGGATATGCAGATGAGCTT 60.553 50.000 26.59 0.00 34.99 3.74
292 293 3.147629 GCTGGATATGCAGATGAGCTTT 58.852 45.455 26.59 0.00 34.99 3.51
293 294 3.568853 GCTGGATATGCAGATGAGCTTTT 59.431 43.478 26.59 0.00 34.99 2.27
294 295 4.320348 GCTGGATATGCAGATGAGCTTTTC 60.320 45.833 26.59 2.25 34.99 2.29
295 296 5.045012 TGGATATGCAGATGAGCTTTTCT 57.955 39.130 0.00 0.00 34.99 2.52
296 297 6.178607 TGGATATGCAGATGAGCTTTTCTA 57.821 37.500 0.00 0.00 34.99 2.10
297 298 6.594744 TGGATATGCAGATGAGCTTTTCTAA 58.405 36.000 0.00 0.00 34.99 2.10
298 299 6.709397 TGGATATGCAGATGAGCTTTTCTAAG 59.291 38.462 0.00 0.00 34.99 2.18
299 300 6.933521 GGATATGCAGATGAGCTTTTCTAAGA 59.066 38.462 0.00 0.00 32.92 2.10
300 301 7.607223 GGATATGCAGATGAGCTTTTCTAAGAT 59.393 37.037 0.00 0.00 32.92 2.40
301 302 6.864360 ATGCAGATGAGCTTTTCTAAGATC 57.136 37.500 0.00 0.00 44.97 2.75
308 309 3.277715 AGCTTTTCTAAGATCAGCTGGC 58.722 45.455 15.13 6.63 39.40 4.85
309 310 3.054508 AGCTTTTCTAAGATCAGCTGGCT 60.055 43.478 15.13 9.07 39.40 4.75
310 311 3.065095 GCTTTTCTAAGATCAGCTGGCTG 59.935 47.826 15.13 15.58 38.22 4.85
311 312 5.160194 GCTTTTCTAAGATCAGCTGGCTGA 61.160 45.833 24.50 24.50 42.78 4.26
312 313 7.152593 GCTTTTCTAAGATCAGCTGGCTGAC 62.153 48.000 24.73 18.13 42.15 3.51
321 322 4.880537 CTGGCTGACGGCTAGCGG 62.881 72.222 19.74 19.74 42.32 5.52
331 332 2.659610 GCTAGCGGCCTCCCTATG 59.340 66.667 0.00 0.00 34.27 2.23
332 333 2.948720 GCTAGCGGCCTCCCTATGG 61.949 68.421 0.00 0.00 34.27 2.74
333 334 1.534235 CTAGCGGCCTCCCTATGGT 60.534 63.158 0.00 0.00 0.00 3.55
334 335 0.251653 CTAGCGGCCTCCCTATGGTA 60.252 60.000 0.00 0.00 0.00 3.25
335 336 0.412244 TAGCGGCCTCCCTATGGTAT 59.588 55.000 0.00 0.00 0.00 2.73
336 337 0.412244 AGCGGCCTCCCTATGGTATA 59.588 55.000 0.00 0.00 0.00 1.47
337 338 0.535797 GCGGCCTCCCTATGGTATAC 59.464 60.000 0.00 0.00 0.00 1.47
338 339 1.933021 CGGCCTCCCTATGGTATACA 58.067 55.000 0.00 0.00 0.00 2.29
339 340 2.467880 CGGCCTCCCTATGGTATACAT 58.532 52.381 0.00 0.00 43.68 2.29
340 341 2.838202 CGGCCTCCCTATGGTATACATT 59.162 50.000 0.00 0.00 41.03 2.71
341 342 4.028131 CGGCCTCCCTATGGTATACATTA 58.972 47.826 0.00 0.00 41.03 1.90
342 343 4.654262 CGGCCTCCCTATGGTATACATTAT 59.346 45.833 0.00 0.00 41.03 1.28
343 344 5.130477 CGGCCTCCCTATGGTATACATTATT 59.870 44.000 0.00 0.00 41.03 1.40
344 345 6.325545 CGGCCTCCCTATGGTATACATTATTA 59.674 42.308 0.00 0.00 41.03 0.98
345 346 7.016268 CGGCCTCCCTATGGTATACATTATTAT 59.984 40.741 0.00 0.00 41.03 1.28
346 347 8.376270 GGCCTCCCTATGGTATACATTATTATC 58.624 40.741 5.01 0.00 41.03 1.75
347 348 8.934697 GCCTCCCTATGGTATACATTATTATCA 58.065 37.037 5.01 0.00 41.03 2.15
384 385 9.640963 ACGATTATCATTTAGATACAACTAGCC 57.359 33.333 0.00 0.00 38.90 3.93
385 386 9.862371 CGATTATCATTTAGATACAACTAGCCT 57.138 33.333 0.00 0.00 38.90 4.58
397 398 8.978472 AGATACAACTAGCCTACTAAAACATCA 58.022 33.333 0.00 0.00 0.00 3.07
398 399 9.765795 GATACAACTAGCCTACTAAAACATCAT 57.234 33.333 0.00 0.00 0.00 2.45
407 408 9.507329 AGCCTACTAAAACATCATATATGTTGG 57.493 33.333 22.02 10.40 40.94 3.77
408 409 9.502091 GCCTACTAAAACATCATATATGTTGGA 57.498 33.333 22.02 2.19 40.94 3.53
412 413 8.836413 ACTAAAACATCATATATGTTGGAACGG 58.164 33.333 22.02 13.64 40.94 4.44
413 414 7.873719 AAAACATCATATATGTTGGAACGGA 57.126 32.000 22.02 0.00 40.94 4.69
414 415 7.496529 AAACATCATATATGTTGGAACGGAG 57.503 36.000 22.02 1.84 40.94 4.63
415 416 5.551233 ACATCATATATGTTGGAACGGAGG 58.449 41.667 22.02 2.98 33.04 4.30
416 417 5.071788 ACATCATATATGTTGGAACGGAGGT 59.928 40.000 22.02 3.52 33.04 3.85
417 418 6.269077 ACATCATATATGTTGGAACGGAGGTA 59.731 38.462 22.02 0.00 33.04 3.08
418 419 6.092955 TCATATATGTTGGAACGGAGGTAC 57.907 41.667 12.42 0.00 0.00 3.34
437 438 7.571080 AGGTACTCTCTCCGTTCTAAAATAG 57.429 40.000 0.00 0.00 0.00 1.73
438 439 7.344913 AGGTACTCTCTCCGTTCTAAAATAGA 58.655 38.462 0.00 0.00 0.00 1.98
439 440 8.000127 AGGTACTCTCTCCGTTCTAAAATAGAT 59.000 37.037 0.00 0.00 34.22 1.98
440 441 8.077386 GGTACTCTCTCCGTTCTAAAATAGATG 58.923 40.741 0.00 0.00 34.22 2.90
441 442 7.883391 ACTCTCTCCGTTCTAAAATAGATGA 57.117 36.000 0.00 0.00 34.22 2.92
442 443 7.708998 ACTCTCTCCGTTCTAAAATAGATGAC 58.291 38.462 0.00 0.00 34.22 3.06
443 444 7.040473 TCTCTCCGTTCTAAAATAGATGACC 57.960 40.000 0.00 0.00 34.22 4.02
444 445 6.040616 TCTCTCCGTTCTAAAATAGATGACCC 59.959 42.308 0.00 0.00 34.22 4.46
445 446 5.659525 TCTCCGTTCTAAAATAGATGACCCA 59.340 40.000 0.00 0.00 34.22 4.51
446 447 6.155565 TCTCCGTTCTAAAATAGATGACCCAA 59.844 38.462 0.00 0.00 34.22 4.12
447 448 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
448 449 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
449 450 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
450 451 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
451 452 9.158233 CGTTCTAAAATAGATGACCCAACTTTA 57.842 33.333 0.00 0.00 34.22 1.85
457 458 6.759497 ATAGATGACCCAACTTTACAAAGC 57.241 37.500 1.60 0.00 39.63 3.51
458 459 4.729868 AGATGACCCAACTTTACAAAGCT 58.270 39.130 1.60 0.00 39.63 3.74
459 460 5.140454 AGATGACCCAACTTTACAAAGCTT 58.860 37.500 0.00 0.00 39.63 3.74
460 461 4.647424 TGACCCAACTTTACAAAGCTTG 57.353 40.909 0.00 0.00 39.63 4.01
461 462 3.383185 TGACCCAACTTTACAAAGCTTGG 59.617 43.478 18.90 18.90 41.53 3.61
462 463 3.371034 ACCCAACTTTACAAAGCTTGGT 58.629 40.909 12.10 12.10 40.98 3.67
463 464 3.383505 ACCCAACTTTACAAAGCTTGGTC 59.616 43.478 10.53 0.00 40.98 4.02
464 465 3.383185 CCCAACTTTACAAAGCTTGGTCA 59.617 43.478 10.53 0.00 40.98 4.02
465 466 4.039124 CCCAACTTTACAAAGCTTGGTCAT 59.961 41.667 10.53 0.00 40.98 3.06
466 467 5.222631 CCAACTTTACAAAGCTTGGTCATC 58.777 41.667 10.53 0.00 39.55 2.92
467 468 5.010012 CCAACTTTACAAAGCTTGGTCATCT 59.990 40.000 10.53 0.00 39.55 2.90
468 469 6.206634 CCAACTTTACAAAGCTTGGTCATCTA 59.793 38.462 10.53 0.00 39.55 1.98
469 470 7.094205 CCAACTTTACAAAGCTTGGTCATCTAT 60.094 37.037 10.53 0.00 39.55 1.98
470 471 8.299570 CAACTTTACAAAGCTTGGTCATCTATT 58.700 33.333 10.53 0.00 39.63 1.73
471 472 8.409358 ACTTTACAAAGCTTGGTCATCTATTT 57.591 30.769 10.53 0.00 39.63 1.40
472 473 8.860088 ACTTTACAAAGCTTGGTCATCTATTTT 58.140 29.630 10.53 0.00 39.63 1.82
475 476 9.733556 TTACAAAGCTTGGTCATCTATTTTAGA 57.266 29.630 10.53 0.00 35.43 2.10
476 477 8.635765 ACAAAGCTTGGTCATCTATTTTAGAA 57.364 30.769 0.00 0.00 34.92 2.10
477 478 8.515414 ACAAAGCTTGGTCATCTATTTTAGAAC 58.485 33.333 0.00 0.00 34.92 3.01
478 479 7.631717 AAGCTTGGTCATCTATTTTAGAACC 57.368 36.000 0.00 0.40 38.50 3.62
479 480 5.817816 AGCTTGGTCATCTATTTTAGAACCG 59.182 40.000 0.00 0.00 38.14 4.44
480 481 5.815740 GCTTGGTCATCTATTTTAGAACCGA 59.184 40.000 0.00 0.49 38.14 4.69
481 482 6.018669 GCTTGGTCATCTATTTTAGAACCGAG 60.019 42.308 13.70 13.70 43.74 4.63
482 483 5.914033 TGGTCATCTATTTTAGAACCGAGG 58.086 41.667 0.00 0.00 38.14 4.63
483 484 5.163343 TGGTCATCTATTTTAGAACCGAGGG 60.163 44.000 0.00 0.00 38.14 4.30
484 485 5.070047 GGTCATCTATTTTAGAACCGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
485 486 6.217294 GTCATCTATTTTAGAACCGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
486 487 5.897824 TCATCTATTTTAGAACCGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
487 488 7.014038 GTCATCTATTTTAGAACCGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
488 489 6.956202 TCTATTTTAGAACCGAGGGAGTAG 57.044 41.667 0.00 0.00 0.00 2.57
489 490 6.430007 TCTATTTTAGAACCGAGGGAGTAGT 58.570 40.000 0.00 0.00 0.00 2.73
490 491 7.577303 TCTATTTTAGAACCGAGGGAGTAGTA 58.423 38.462 0.00 0.00 0.00 1.82
491 492 6.712179 ATTTTAGAACCGAGGGAGTAGTAG 57.288 41.667 0.00 0.00 0.00 2.57
492 493 5.441718 TTTAGAACCGAGGGAGTAGTAGA 57.558 43.478 0.00 0.00 0.00 2.59
493 494 5.643421 TTAGAACCGAGGGAGTAGTAGAT 57.357 43.478 0.00 0.00 0.00 1.98
494 495 6.753913 TTAGAACCGAGGGAGTAGTAGATA 57.246 41.667 0.00 0.00 0.00 1.98
495 496 4.971939 AGAACCGAGGGAGTAGTAGATAC 58.028 47.826 0.00 0.00 34.30 2.24
497 498 5.843421 AGAACCGAGGGAGTAGTAGATACTA 59.157 44.000 0.00 0.00 45.06 1.82
510 511 6.636562 AGTAGATACTACATGAAACCCTCG 57.363 41.667 0.00 0.00 34.13 4.63
511 512 4.939052 AGATACTACATGAAACCCTCGG 57.061 45.455 0.00 0.00 0.00 4.63
512 513 4.287552 AGATACTACATGAAACCCTCGGT 58.712 43.478 0.00 0.00 37.65 4.69
513 514 5.452255 AGATACTACATGAAACCCTCGGTA 58.548 41.667 0.00 0.00 33.12 4.02
514 515 5.535406 AGATACTACATGAAACCCTCGGTAG 59.465 44.000 0.00 0.00 39.06 3.18
515 516 2.764572 ACTACATGAAACCCTCGGTAGG 59.235 50.000 0.00 0.00 43.25 3.18
526 527 1.521580 CTCGGTAGGACTACGGATCC 58.478 60.000 16.72 0.00 42.07 3.36
527 528 0.109342 TCGGTAGGACTACGGATCCC 59.891 60.000 6.06 0.00 39.45 3.85
528 529 0.110104 CGGTAGGACTACGGATCCCT 59.890 60.000 6.06 0.00 38.25 4.20
529 530 1.349026 CGGTAGGACTACGGATCCCTA 59.651 57.143 6.06 0.00 38.25 3.53
530 531 2.789213 GGTAGGACTACGGATCCCTAC 58.211 57.143 14.22 14.22 46.37 3.18
531 532 3.498774 GTAGGACTACGGATCCCTACA 57.501 52.381 16.55 0.00 46.35 2.74
532 533 4.031636 GTAGGACTACGGATCCCTACAT 57.968 50.000 16.55 1.63 46.35 2.29
533 534 2.877866 AGGACTACGGATCCCTACATG 58.122 52.381 6.06 0.00 36.86 3.21
534 535 2.177233 AGGACTACGGATCCCTACATGT 59.823 50.000 6.06 2.69 36.86 3.21
535 536 2.296471 GGACTACGGATCCCTACATGTG 59.704 54.545 9.11 0.00 0.00 3.21
536 537 2.957006 GACTACGGATCCCTACATGTGT 59.043 50.000 9.11 0.00 0.00 3.72
537 538 2.693591 ACTACGGATCCCTACATGTGTG 59.306 50.000 9.11 0.87 0.00 3.82
538 539 1.860641 ACGGATCCCTACATGTGTGA 58.139 50.000 9.11 2.30 0.00 3.58
539 540 2.184533 ACGGATCCCTACATGTGTGAA 58.815 47.619 9.11 0.00 0.00 3.18
540 541 2.168521 ACGGATCCCTACATGTGTGAAG 59.831 50.000 9.11 0.00 0.00 3.02
541 542 2.565841 GGATCCCTACATGTGTGAAGC 58.434 52.381 9.11 0.00 0.00 3.86
542 543 2.205074 GATCCCTACATGTGTGAAGCG 58.795 52.381 9.11 0.00 0.00 4.68
543 544 1.262417 TCCCTACATGTGTGAAGCGA 58.738 50.000 9.11 0.00 0.00 4.93
544 545 1.204704 TCCCTACATGTGTGAAGCGAG 59.795 52.381 9.11 0.00 0.00 5.03
545 546 1.204704 CCCTACATGTGTGAAGCGAGA 59.795 52.381 9.11 0.00 0.00 4.04
546 547 2.534298 CCTACATGTGTGAAGCGAGAG 58.466 52.381 9.11 0.00 0.00 3.20
547 548 2.164422 CCTACATGTGTGAAGCGAGAGA 59.836 50.000 9.11 0.00 0.00 3.10
548 549 2.820059 ACATGTGTGAAGCGAGAGAA 57.180 45.000 0.00 0.00 0.00 2.87
549 550 2.681706 ACATGTGTGAAGCGAGAGAAG 58.318 47.619 0.00 0.00 0.00 2.85
550 551 2.036475 ACATGTGTGAAGCGAGAGAAGT 59.964 45.455 0.00 0.00 0.00 3.01
551 552 2.890808 TGTGTGAAGCGAGAGAAGTT 57.109 45.000 0.00 0.00 0.00 2.66
552 553 2.743938 TGTGTGAAGCGAGAGAAGTTC 58.256 47.619 0.00 0.00 0.00 3.01
553 554 2.062519 GTGTGAAGCGAGAGAAGTTCC 58.937 52.381 0.00 0.00 0.00 3.62
554 555 1.686587 TGTGAAGCGAGAGAAGTTCCA 59.313 47.619 0.00 0.00 0.00 3.53
555 556 2.102420 TGTGAAGCGAGAGAAGTTCCAA 59.898 45.455 0.00 0.00 0.00 3.53
556 557 2.476997 GTGAAGCGAGAGAAGTTCCAAC 59.523 50.000 0.00 0.00 0.00 3.77
557 558 2.070028 GAAGCGAGAGAAGTTCCAACC 58.930 52.381 0.00 0.00 0.00 3.77
558 559 0.321996 AGCGAGAGAAGTTCCAACCC 59.678 55.000 0.00 0.00 0.00 4.11
559 560 0.321996 GCGAGAGAAGTTCCAACCCT 59.678 55.000 0.00 0.00 0.00 4.34
560 561 1.270893 GCGAGAGAAGTTCCAACCCTT 60.271 52.381 0.00 0.00 0.00 3.95
561 562 2.689646 CGAGAGAAGTTCCAACCCTTC 58.310 52.381 0.00 0.00 37.85 3.46
562 563 2.037251 CGAGAGAAGTTCCAACCCTTCA 59.963 50.000 0.00 0.00 39.61 3.02
563 564 3.494398 CGAGAGAAGTTCCAACCCTTCAA 60.494 47.826 0.00 0.00 39.61 2.69
564 565 4.068599 GAGAGAAGTTCCAACCCTTCAAG 58.931 47.826 0.00 0.00 39.61 3.02
565 566 2.554462 GAGAAGTTCCAACCCTTCAAGC 59.446 50.000 0.00 0.00 39.61 4.01
566 567 1.613925 GAAGTTCCAACCCTTCAAGCC 59.386 52.381 0.00 0.00 37.58 4.35
567 568 0.555769 AGTTCCAACCCTTCAAGCCA 59.444 50.000 0.00 0.00 0.00 4.75
568 569 1.063266 AGTTCCAACCCTTCAAGCCAA 60.063 47.619 0.00 0.00 0.00 4.52
569 570 1.970640 GTTCCAACCCTTCAAGCCAAT 59.029 47.619 0.00 0.00 0.00 3.16
570 571 1.923356 TCCAACCCTTCAAGCCAATC 58.077 50.000 0.00 0.00 0.00 2.67
571 572 0.897621 CCAACCCTTCAAGCCAATCC 59.102 55.000 0.00 0.00 0.00 3.01
572 573 1.631405 CAACCCTTCAAGCCAATCCA 58.369 50.000 0.00 0.00 0.00 3.41
573 574 1.273327 CAACCCTTCAAGCCAATCCAC 59.727 52.381 0.00 0.00 0.00 4.02
574 575 0.251787 ACCCTTCAAGCCAATCCACC 60.252 55.000 0.00 0.00 0.00 4.61
575 576 1.315257 CCCTTCAAGCCAATCCACCG 61.315 60.000 0.00 0.00 0.00 4.94
576 577 1.508088 CTTCAAGCCAATCCACCGC 59.492 57.895 0.00 0.00 0.00 5.68
577 578 2.257286 CTTCAAGCCAATCCACCGCG 62.257 60.000 0.00 0.00 0.00 6.46
578 579 3.055719 CAAGCCAATCCACCGCGT 61.056 61.111 4.92 0.00 0.00 6.01
579 580 3.055719 AAGCCAATCCACCGCGTG 61.056 61.111 4.92 3.32 0.00 5.34
580 581 3.842925 AAGCCAATCCACCGCGTGT 62.843 57.895 4.92 0.00 0.00 4.49
581 582 3.799755 GCCAATCCACCGCGTGTC 61.800 66.667 4.92 0.00 0.00 3.67
582 583 3.124921 CCAATCCACCGCGTGTCC 61.125 66.667 4.92 0.00 0.00 4.02
583 584 2.047274 CAATCCACCGCGTGTCCT 60.047 61.111 4.92 0.00 0.00 3.85
584 585 2.047274 AATCCACCGCGTGTCCTG 60.047 61.111 4.92 0.00 0.00 3.86
585 586 2.879233 AATCCACCGCGTGTCCTGT 61.879 57.895 4.92 0.00 0.00 4.00
586 587 3.589654 ATCCACCGCGTGTCCTGTG 62.590 63.158 4.92 4.51 0.00 3.66
588 589 4.293648 CACCGCGTGTCCTGTGGA 62.294 66.667 4.92 0.00 39.39 4.02
597 598 1.906824 GTCCTGTGGACCGGAGTCA 60.907 63.158 9.46 0.00 46.19 3.41
661 662 3.882888 TGAAGATCAAGAAAGCCAACGTT 59.117 39.130 0.00 0.00 0.00 3.99
662 663 4.338118 TGAAGATCAAGAAAGCCAACGTTT 59.662 37.500 0.00 0.00 0.00 3.60
663 664 4.489679 AGATCAAGAAAGCCAACGTTTC 57.510 40.909 0.00 0.00 34.64 2.78
664 665 4.137543 AGATCAAGAAAGCCAACGTTTCT 58.862 39.130 0.00 0.00 44.44 2.52
684 703 5.576337 TCTTGAATTTCGTCGAACTTGAG 57.424 39.130 14.43 11.68 0.00 3.02
686 705 2.478894 TGAATTTCGTCGAACTTGAGCC 59.521 45.455 14.43 2.26 0.00 4.70
687 706 2.163818 ATTTCGTCGAACTTGAGCCA 57.836 45.000 7.29 0.00 0.00 4.75
688 707 1.942677 TTTCGTCGAACTTGAGCCAA 58.057 45.000 7.29 0.00 0.00 4.52
760 907 3.453070 CTAGGCAGCTCCTTCCGGC 62.453 68.421 9.58 0.00 44.75 6.13
903 1051 1.004200 CGCACGTTTACCCCTTCCT 60.004 57.895 0.00 0.00 0.00 3.36
907 1055 0.322648 ACGTTTACCCCTTCCTTCGG 59.677 55.000 0.00 0.00 0.00 4.30
928 1076 4.200283 CGACTCTGCTCTCCCGGC 62.200 72.222 0.00 0.00 0.00 6.13
979 1132 4.702081 ACGAGAGCGCGGTGTGTC 62.702 66.667 18.92 8.77 42.48 3.67
1092 1245 4.284550 ATGGTGGTGCGCCTGGTT 62.285 61.111 18.96 0.00 34.70 3.67
1370 1523 1.513586 CCGCGTCGTCCTCTAACAC 60.514 63.158 4.92 0.00 0.00 3.32
1380 1533 2.548480 GTCCTCTAACACCAACAGCAAC 59.452 50.000 0.00 0.00 0.00 4.17
1507 1660 1.303317 AAGGACGGCGGCAATTCTT 60.303 52.632 17.61 5.45 0.00 2.52
1762 1915 0.110419 GGAGATGCGAGACGAGATCG 60.110 60.000 0.00 0.00 46.33 3.69
1791 1944 2.508891 GCTCATCTTCGACGGCGTG 61.509 63.158 21.19 10.44 38.98 5.34
1845 1998 2.029365 GCGCAAGAAGGAAATCTACGAC 59.971 50.000 0.30 0.00 43.02 4.34
2087 2243 2.376518 ACTTTGGATCAGGTGATGGTGT 59.623 45.455 0.00 0.00 34.37 4.16
2090 2246 0.181350 GGATCAGGTGATGGTGTCCC 59.819 60.000 0.00 0.00 34.37 4.46
2094 2250 3.717294 GGTGATGGTGTCCCGGCT 61.717 66.667 0.00 0.00 0.00 5.52
2125 2281 0.318699 CGAGCTCGTGTTGGAAGACA 60.319 55.000 27.79 0.00 34.11 3.41
2216 2372 3.103911 CGTCGACGCCAAGGTCAC 61.104 66.667 26.59 0.00 36.73 3.67
2217 2373 2.028484 GTCGACGCCAAGGTCACA 59.972 61.111 0.00 0.00 36.73 3.58
2530 2686 2.142357 CTGCACCTCGGACAAGACGA 62.142 60.000 0.00 0.00 38.79 4.20
2602 2758 2.997315 ACCTGGCGAGCTACAGCA 60.997 61.111 3.70 0.00 45.16 4.41
2715 2871 2.186125 CTGCTCATCTCCAGCGCA 59.814 61.111 11.47 0.00 40.01 6.09
2781 2937 0.338467 TCTTCAAGATCCCCGGGAGA 59.662 55.000 26.32 18.63 34.05 3.71
2841 2997 4.865761 GACTACATCGCCGCCGCA 62.866 66.667 0.00 0.00 34.03 5.69
4179 4335 4.803426 GGTCCAGCGACGAGGCAG 62.803 72.222 0.00 0.00 40.17 4.85
4225 4381 7.413446 TCAACCTAGAAATCCTGGAATTCAAT 58.587 34.615 22.87 8.87 0.00 2.57
4389 4663 7.537306 GGTGTACTGTATGTTGCTGTATTTTTG 59.463 37.037 0.00 0.00 0.00 2.44
4447 4725 5.955959 AGGACAAAACTAAAACTTCCCAAGT 59.044 36.000 0.00 0.00 45.46 3.16
4448 4726 7.120716 AGGACAAAACTAAAACTTCCCAAGTA 58.879 34.615 0.00 0.00 41.91 2.24
4463 4741 9.232882 ACTTCCCAAGTATAATTAACCCATAGA 57.767 33.333 0.00 0.00 40.69 1.98
4493 4774 7.003482 TGACATTAATTATATCAAGCCCAGCA 58.997 34.615 0.00 0.00 0.00 4.41
4575 4868 1.602311 CTACATGCCATGGCCTTCTC 58.398 55.000 33.44 6.02 41.09 2.87
5054 5350 2.068821 GGGCATGAGGAGGCTGAGA 61.069 63.158 0.00 0.00 0.00 3.27
5121 5417 3.611517 CTGCTGTTGACGTCTTTTCTTG 58.388 45.455 17.92 2.02 0.00 3.02
5184 5480 5.727515 GCATCAGCAAACACAAAAGGAAAAC 60.728 40.000 0.00 0.00 41.58 2.43
5185 5481 3.923461 TCAGCAAACACAAAAGGAAAACG 59.077 39.130 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.118454 CACCACACGGCGGATGTC 61.118 66.667 13.24 0.00 34.57 3.06
9 10 3.657448 TAGCACCACACGGCGGATG 62.657 63.158 13.24 8.90 34.57 3.51
10 11 3.387091 TAGCACCACACGGCGGAT 61.387 61.111 13.24 0.00 34.57 4.18
11 12 4.367023 GTAGCACCACACGGCGGA 62.367 66.667 13.24 0.00 34.57 5.54
16 17 1.588824 TACTCCCGTAGCACCACACG 61.589 60.000 0.00 0.00 37.89 4.49
17 18 0.822164 ATACTCCCGTAGCACCACAC 59.178 55.000 0.00 0.00 0.00 3.82
18 19 1.108776 GATACTCCCGTAGCACCACA 58.891 55.000 0.00 0.00 32.42 4.17
19 20 0.030369 CGATACTCCCGTAGCACCAC 59.970 60.000 0.00 0.00 31.63 4.16
20 21 0.107066 TCGATACTCCCGTAGCACCA 60.107 55.000 0.00 0.00 31.63 4.17
21 22 0.310232 GTCGATACTCCCGTAGCACC 59.690 60.000 0.00 0.00 31.63 5.01
22 23 1.002684 CTGTCGATACTCCCGTAGCAC 60.003 57.143 0.00 0.00 31.63 4.40
23 24 1.306148 CTGTCGATACTCCCGTAGCA 58.694 55.000 0.00 0.00 31.63 3.49
24 25 1.002684 CACTGTCGATACTCCCGTAGC 60.003 57.143 0.00 0.00 0.00 3.58
25 26 1.002684 GCACTGTCGATACTCCCGTAG 60.003 57.143 0.00 0.00 0.00 3.51
26 27 1.019673 GCACTGTCGATACTCCCGTA 58.980 55.000 0.00 0.00 0.00 4.02
27 28 0.680280 AGCACTGTCGATACTCCCGT 60.680 55.000 0.00 0.00 0.00 5.28
28 29 0.248661 CAGCACTGTCGATACTCCCG 60.249 60.000 0.00 0.00 0.00 5.14
29 30 0.103208 CCAGCACTGTCGATACTCCC 59.897 60.000 0.00 0.00 0.00 4.30
30 31 1.103803 TCCAGCACTGTCGATACTCC 58.896 55.000 0.00 0.00 0.00 3.85
31 32 3.119291 CAATCCAGCACTGTCGATACTC 58.881 50.000 0.00 0.00 0.00 2.59
32 33 2.159043 CCAATCCAGCACTGTCGATACT 60.159 50.000 0.00 0.00 0.00 2.12
33 34 2.159099 TCCAATCCAGCACTGTCGATAC 60.159 50.000 0.00 0.00 0.00 2.24
34 35 2.101415 CTCCAATCCAGCACTGTCGATA 59.899 50.000 0.00 0.00 0.00 2.92
35 36 0.904649 TCCAATCCAGCACTGTCGAT 59.095 50.000 0.00 0.00 0.00 3.59
36 37 0.247460 CTCCAATCCAGCACTGTCGA 59.753 55.000 0.00 0.00 0.00 4.20
37 38 1.364626 GCTCCAATCCAGCACTGTCG 61.365 60.000 0.00 0.00 36.82 4.35
38 39 0.321919 TGCTCCAATCCAGCACTGTC 60.322 55.000 0.00 0.00 42.09 3.51
39 40 1.763120 TGCTCCAATCCAGCACTGT 59.237 52.632 0.00 0.00 42.09 3.55
40 41 4.728409 TGCTCCAATCCAGCACTG 57.272 55.556 0.00 0.00 42.09 3.66
44 45 0.379669 CAACGATGCTCCAATCCAGC 59.620 55.000 0.00 0.00 37.40 4.85
45 46 1.019673 CCAACGATGCTCCAATCCAG 58.980 55.000 0.00 0.00 0.00 3.86
46 47 0.394216 CCCAACGATGCTCCAATCCA 60.394 55.000 0.00 0.00 0.00 3.41
47 48 1.728490 GCCCAACGATGCTCCAATCC 61.728 60.000 0.00 0.00 0.00 3.01
48 49 1.728490 GGCCCAACGATGCTCCAATC 61.728 60.000 0.00 0.00 0.00 2.67
49 50 1.754234 GGCCCAACGATGCTCCAAT 60.754 57.895 0.00 0.00 0.00 3.16
50 51 2.361104 GGCCCAACGATGCTCCAA 60.361 61.111 0.00 0.00 0.00 3.53
51 52 3.645660 TGGCCCAACGATGCTCCA 61.646 61.111 0.00 0.00 0.00 3.86
52 53 3.134127 GTGGCCCAACGATGCTCC 61.134 66.667 0.00 0.00 0.00 4.70
53 54 3.134127 GGTGGCCCAACGATGCTC 61.134 66.667 0.00 0.00 0.00 4.26
59 60 1.078708 ATACTTCGGTGGCCCAACG 60.079 57.895 16.85 16.85 46.80 4.10
60 61 1.087771 CGATACTTCGGTGGCCCAAC 61.088 60.000 0.00 0.00 41.74 3.77
61 62 1.219664 CGATACTTCGGTGGCCCAA 59.780 57.895 0.00 0.00 41.74 4.12
62 63 2.897207 CGATACTTCGGTGGCCCA 59.103 61.111 0.00 0.00 41.74 5.36
71 72 2.273370 TTGCAGACCGACGATACTTC 57.727 50.000 0.00 0.00 0.00 3.01
72 73 2.540515 CATTGCAGACCGACGATACTT 58.459 47.619 0.00 0.00 0.00 2.24
73 74 1.202417 CCATTGCAGACCGACGATACT 60.202 52.381 0.00 0.00 0.00 2.12
74 75 1.202371 TCCATTGCAGACCGACGATAC 60.202 52.381 0.00 0.00 0.00 2.24
75 76 1.067060 CTCCATTGCAGACCGACGATA 59.933 52.381 0.00 0.00 0.00 2.92
76 77 0.179100 CTCCATTGCAGACCGACGAT 60.179 55.000 0.00 0.00 0.00 3.73
77 78 1.215382 CTCCATTGCAGACCGACGA 59.785 57.895 0.00 0.00 0.00 4.20
78 79 2.456119 GCTCCATTGCAGACCGACG 61.456 63.158 0.00 0.00 0.00 5.12
79 80 1.375908 TGCTCCATTGCAGACCGAC 60.376 57.895 0.00 0.00 38.12 4.79
80 81 1.375908 GTGCTCCATTGCAGACCGA 60.376 57.895 0.00 0.00 44.20 4.69
81 82 2.743752 CGTGCTCCATTGCAGACCG 61.744 63.158 0.00 0.00 44.20 4.79
82 83 1.639298 GACGTGCTCCATTGCAGACC 61.639 60.000 0.00 0.00 44.20 3.85
83 84 1.790387 GACGTGCTCCATTGCAGAC 59.210 57.895 0.00 0.00 44.20 3.51
84 85 1.737735 CGACGTGCTCCATTGCAGA 60.738 57.895 0.00 0.00 44.20 4.26
85 86 1.959899 GACGACGTGCTCCATTGCAG 61.960 60.000 4.58 0.00 44.20 4.41
86 87 2.027073 GACGACGTGCTCCATTGCA 61.027 57.895 4.58 0.00 41.05 4.08
87 88 2.778679 GACGACGTGCTCCATTGC 59.221 61.111 4.58 0.00 0.00 3.56
88 89 0.802222 ATCGACGACGTGCTCCATTG 60.802 55.000 4.58 0.00 40.69 2.82
89 90 0.802222 CATCGACGACGTGCTCCATT 60.802 55.000 4.58 0.00 40.69 3.16
90 91 1.226688 CATCGACGACGTGCTCCAT 60.227 57.895 4.58 0.00 40.69 3.41
91 92 2.178273 CATCGACGACGTGCTCCA 59.822 61.111 4.58 0.00 40.69 3.86
92 93 3.248171 GCATCGACGACGTGCTCC 61.248 66.667 20.19 0.00 40.45 4.70
93 94 2.500442 CTGCATCGACGACGTGCTC 61.500 63.158 24.53 9.29 42.32 4.26
94 95 2.504899 CTGCATCGACGACGTGCT 60.505 61.111 24.53 5.53 42.32 4.40
95 96 4.196826 GCTGCATCGACGACGTGC 62.197 66.667 20.48 20.48 42.24 5.34
96 97 2.500442 GAGCTGCATCGACGACGTG 61.500 63.158 4.58 6.37 40.69 4.49
97 98 2.202492 GAGCTGCATCGACGACGT 60.202 61.111 0.00 0.00 40.69 4.34
98 99 1.936880 GAGAGCTGCATCGACGACG 60.937 63.158 0.00 0.00 41.26 5.12
99 100 1.936880 CGAGAGCTGCATCGACGAC 60.937 63.158 18.65 0.00 41.40 4.34
100 101 2.405191 CGAGAGCTGCATCGACGA 59.595 61.111 18.65 0.00 41.40 4.20
117 118 3.627960 TGCTACGCACGAAGCTTTTGC 62.628 52.381 19.24 19.24 42.61 3.68
118 119 0.234625 TGCTACGCACGAAGCTTTTG 59.765 50.000 0.00 2.23 42.61 2.44
119 120 0.512952 CTGCTACGCACGAAGCTTTT 59.487 50.000 0.00 0.00 42.61 2.27
120 121 0.600255 ACTGCTACGCACGAAGCTTT 60.600 50.000 0.00 0.00 42.61 3.51
121 122 1.006102 ACTGCTACGCACGAAGCTT 60.006 52.632 0.00 0.00 42.61 3.74
122 123 1.734477 CACTGCTACGCACGAAGCT 60.734 57.895 0.00 0.00 42.61 3.74
123 124 2.772189 CACTGCTACGCACGAAGC 59.228 61.111 0.00 0.00 39.25 3.86
124 125 2.772189 GCACTGCTACGCACGAAG 59.228 61.111 0.00 0.00 33.79 3.79
125 126 3.103289 CGCACTGCTACGCACGAA 61.103 61.111 0.00 0.00 33.79 3.85
126 127 3.946305 CTCGCACTGCTACGCACGA 62.946 63.158 0.00 0.00 34.46 4.35
127 128 2.844224 TACTCGCACTGCTACGCACG 62.844 60.000 0.00 0.00 33.79 5.34
128 129 0.731514 TTACTCGCACTGCTACGCAC 60.732 55.000 0.00 0.00 33.79 5.34
129 130 0.731514 GTTACTCGCACTGCTACGCA 60.732 55.000 0.00 0.00 36.92 5.24
130 131 0.731514 TGTTACTCGCACTGCTACGC 60.732 55.000 0.00 0.00 0.00 4.42
131 132 1.649171 CTTGTTACTCGCACTGCTACG 59.351 52.381 0.00 0.00 0.00 3.51
132 133 1.993370 CCTTGTTACTCGCACTGCTAC 59.007 52.381 0.00 0.00 0.00 3.58
133 134 1.890489 TCCTTGTTACTCGCACTGCTA 59.110 47.619 0.00 0.00 0.00 3.49
134 135 0.679505 TCCTTGTTACTCGCACTGCT 59.320 50.000 0.00 0.00 0.00 4.24
135 136 1.394917 CATCCTTGTTACTCGCACTGC 59.605 52.381 0.00 0.00 0.00 4.40
136 137 2.959516 TCATCCTTGTTACTCGCACTG 58.040 47.619 0.00 0.00 0.00 3.66
137 138 3.525537 CATCATCCTTGTTACTCGCACT 58.474 45.455 0.00 0.00 0.00 4.40
138 139 2.609459 CCATCATCCTTGTTACTCGCAC 59.391 50.000 0.00 0.00 0.00 5.34
139 140 2.499693 TCCATCATCCTTGTTACTCGCA 59.500 45.455 0.00 0.00 0.00 5.10
140 141 3.126831 CTCCATCATCCTTGTTACTCGC 58.873 50.000 0.00 0.00 0.00 5.03
141 142 3.722147 CCTCCATCATCCTTGTTACTCG 58.278 50.000 0.00 0.00 0.00 4.18
142 143 3.471680 GCCTCCATCATCCTTGTTACTC 58.528 50.000 0.00 0.00 0.00 2.59
143 144 2.158900 CGCCTCCATCATCCTTGTTACT 60.159 50.000 0.00 0.00 0.00 2.24
144 145 2.213499 CGCCTCCATCATCCTTGTTAC 58.787 52.381 0.00 0.00 0.00 2.50
145 146 1.837439 ACGCCTCCATCATCCTTGTTA 59.163 47.619 0.00 0.00 0.00 2.41
146 147 0.620556 ACGCCTCCATCATCCTTGTT 59.379 50.000 0.00 0.00 0.00 2.83
147 148 0.620556 AACGCCTCCATCATCCTTGT 59.379 50.000 0.00 0.00 0.00 3.16
148 149 1.019673 CAACGCCTCCATCATCCTTG 58.980 55.000 0.00 0.00 0.00 3.61
149 150 0.749454 GCAACGCCTCCATCATCCTT 60.749 55.000 0.00 0.00 0.00 3.36
150 151 1.153086 GCAACGCCTCCATCATCCT 60.153 57.895 0.00 0.00 0.00 3.24
151 152 1.442526 CTGCAACGCCTCCATCATCC 61.443 60.000 0.00 0.00 0.00 3.51
152 153 0.462581 TCTGCAACGCCTCCATCATC 60.463 55.000 0.00 0.00 0.00 2.92
153 154 0.745845 GTCTGCAACGCCTCCATCAT 60.746 55.000 0.00 0.00 0.00 2.45
154 155 1.375908 GTCTGCAACGCCTCCATCA 60.376 57.895 0.00 0.00 0.00 3.07
155 156 2.456119 CGTCTGCAACGCCTCCATC 61.456 63.158 8.15 0.00 45.76 3.51
156 157 2.434884 CGTCTGCAACGCCTCCAT 60.435 61.111 8.15 0.00 45.76 3.41
175 176 4.344865 TTCCTTCCCAGCACGCCC 62.345 66.667 0.00 0.00 0.00 6.13
176 177 2.747855 CTTCCTTCCCAGCACGCC 60.748 66.667 0.00 0.00 0.00 5.68
177 178 3.435186 GCTTCCTTCCCAGCACGC 61.435 66.667 0.00 0.00 35.95 5.34
178 179 2.859273 ATCGCTTCCTTCCCAGCACG 62.859 60.000 0.00 0.00 35.60 5.34
179 180 0.178068 TATCGCTTCCTTCCCAGCAC 59.822 55.000 0.00 0.00 35.60 4.40
180 181 0.908910 TTATCGCTTCCTTCCCAGCA 59.091 50.000 0.00 0.00 35.60 4.41
181 182 1.300481 GTTATCGCTTCCTTCCCAGC 58.700 55.000 0.00 0.00 0.00 4.85
182 183 2.691409 TGTTATCGCTTCCTTCCCAG 57.309 50.000 0.00 0.00 0.00 4.45
183 184 2.421388 CCATGTTATCGCTTCCTTCCCA 60.421 50.000 0.00 0.00 0.00 4.37
184 185 2.222027 CCATGTTATCGCTTCCTTCCC 58.778 52.381 0.00 0.00 0.00 3.97
185 186 2.872858 GACCATGTTATCGCTTCCTTCC 59.127 50.000 0.00 0.00 0.00 3.46
186 187 3.798202 AGACCATGTTATCGCTTCCTTC 58.202 45.455 0.00 0.00 0.00 3.46
187 188 3.738281 CGAGACCATGTTATCGCTTCCTT 60.738 47.826 0.00 0.00 0.00 3.36
188 189 2.223829 CGAGACCATGTTATCGCTTCCT 60.224 50.000 0.00 0.00 0.00 3.36
189 190 2.128035 CGAGACCATGTTATCGCTTCC 58.872 52.381 0.00 0.00 0.00 3.46
190 191 2.128035 CCGAGACCATGTTATCGCTTC 58.872 52.381 1.29 0.00 33.94 3.86
191 192 1.480954 ACCGAGACCATGTTATCGCTT 59.519 47.619 1.29 0.00 33.94 4.68
192 193 1.112113 ACCGAGACCATGTTATCGCT 58.888 50.000 1.29 0.00 33.94 4.93
193 194 1.209128 CACCGAGACCATGTTATCGC 58.791 55.000 1.29 0.00 33.94 4.58
194 195 2.159296 TCACACCGAGACCATGTTATCG 60.159 50.000 0.00 0.00 35.02 2.92
195 196 3.187700 GTCACACCGAGACCATGTTATC 58.812 50.000 0.00 0.00 0.00 1.75
196 197 3.247006 GTCACACCGAGACCATGTTAT 57.753 47.619 0.00 0.00 0.00 1.89
197 198 2.736144 GTCACACCGAGACCATGTTA 57.264 50.000 0.00 0.00 0.00 2.41
198 199 3.606886 GTCACACCGAGACCATGTT 57.393 52.632 0.00 0.00 0.00 2.71
204 205 1.471119 TGATAGGGTCACACCGAGAC 58.529 55.000 0.00 0.00 39.83 3.36
205 206 2.307768 GATGATAGGGTCACACCGAGA 58.692 52.381 0.00 0.00 39.83 4.04
206 207 2.031870 TGATGATAGGGTCACACCGAG 58.968 52.381 0.00 0.00 39.83 4.63
207 208 2.153034 TGATGATAGGGTCACACCGA 57.847 50.000 0.00 0.00 39.83 4.69
208 209 2.483714 CCTTGATGATAGGGTCACACCG 60.484 54.545 0.00 0.00 39.83 4.94
209 210 2.771943 TCCTTGATGATAGGGTCACACC 59.228 50.000 0.00 0.00 40.28 4.16
210 211 4.696479 ATCCTTGATGATAGGGTCACAC 57.304 45.455 0.00 0.00 40.28 3.82
211 212 6.688922 GCTTAATCCTTGATGATAGGGTCACA 60.689 42.308 0.00 0.00 40.28 3.58
212 213 5.703130 GCTTAATCCTTGATGATAGGGTCAC 59.297 44.000 0.00 0.00 40.28 3.67
213 214 5.511373 CGCTTAATCCTTGATGATAGGGTCA 60.511 44.000 0.00 0.00 42.06 4.02
214 215 4.932200 CGCTTAATCCTTGATGATAGGGTC 59.068 45.833 0.00 0.00 33.41 4.46
215 216 4.263068 CCGCTTAATCCTTGATGATAGGGT 60.263 45.833 0.00 0.00 33.41 4.34
216 217 4.020218 TCCGCTTAATCCTTGATGATAGGG 60.020 45.833 0.00 0.00 33.41 3.53
217 218 4.932200 GTCCGCTTAATCCTTGATGATAGG 59.068 45.833 0.00 0.00 0.00 2.57
218 219 4.932200 GGTCCGCTTAATCCTTGATGATAG 59.068 45.833 0.00 0.00 0.00 2.08
219 220 4.346709 TGGTCCGCTTAATCCTTGATGATA 59.653 41.667 0.00 0.00 0.00 2.15
220 221 3.136443 TGGTCCGCTTAATCCTTGATGAT 59.864 43.478 0.00 0.00 0.00 2.45
221 222 2.503765 TGGTCCGCTTAATCCTTGATGA 59.496 45.455 0.00 0.00 0.00 2.92
222 223 2.917933 TGGTCCGCTTAATCCTTGATG 58.082 47.619 0.00 0.00 0.00 3.07
223 224 3.644966 TTGGTCCGCTTAATCCTTGAT 57.355 42.857 0.00 0.00 0.00 2.57
224 225 3.426787 TTTGGTCCGCTTAATCCTTGA 57.573 42.857 0.00 0.00 0.00 3.02
225 226 4.718940 AATTTGGTCCGCTTAATCCTTG 57.281 40.909 0.00 0.00 0.00 3.61
226 227 5.751586 TCTAATTTGGTCCGCTTAATCCTT 58.248 37.500 0.00 0.00 0.00 3.36
227 228 5.367945 TCTAATTTGGTCCGCTTAATCCT 57.632 39.130 0.00 0.00 0.00 3.24
228 229 6.635030 AATCTAATTTGGTCCGCTTAATCC 57.365 37.500 0.00 0.00 0.00 3.01
229 230 7.750903 GCATAATCTAATTTGGTCCGCTTAATC 59.249 37.037 0.00 0.00 0.00 1.75
230 231 7.573096 CGCATAATCTAATTTGGTCCGCTTAAT 60.573 37.037 0.00 0.00 0.00 1.40
231 232 6.293190 CGCATAATCTAATTTGGTCCGCTTAA 60.293 38.462 0.00 0.00 0.00 1.85
232 233 5.178623 CGCATAATCTAATTTGGTCCGCTTA 59.821 40.000 0.00 0.00 0.00 3.09
233 234 4.024048 CGCATAATCTAATTTGGTCCGCTT 60.024 41.667 0.00 0.00 0.00 4.68
234 235 3.498397 CGCATAATCTAATTTGGTCCGCT 59.502 43.478 0.00 0.00 0.00 5.52
235 236 3.250040 ACGCATAATCTAATTTGGTCCGC 59.750 43.478 0.00 0.00 0.00 5.54
236 237 6.202188 ACTTACGCATAATCTAATTTGGTCCG 59.798 38.462 0.00 0.00 0.00 4.79
237 238 7.492352 ACTTACGCATAATCTAATTTGGTCC 57.508 36.000 0.00 0.00 0.00 4.46
240 241 9.659830 GGTTTACTTACGCATAATCTAATTTGG 57.340 33.333 0.00 0.00 0.00 3.28
244 245 8.545420 CGTTGGTTTACTTACGCATAATCTAAT 58.455 33.333 0.00 0.00 0.00 1.73
245 246 7.010367 CCGTTGGTTTACTTACGCATAATCTAA 59.990 37.037 0.00 0.00 32.97 2.10
246 247 6.476380 CCGTTGGTTTACTTACGCATAATCTA 59.524 38.462 0.00 0.00 32.97 1.98
247 248 5.292589 CCGTTGGTTTACTTACGCATAATCT 59.707 40.000 0.00 0.00 32.97 2.40
248 249 5.495502 CCGTTGGTTTACTTACGCATAATC 58.504 41.667 0.00 0.00 32.97 1.75
249 250 4.201841 GCCGTTGGTTTACTTACGCATAAT 60.202 41.667 0.00 0.00 32.97 1.28
250 251 3.124976 GCCGTTGGTTTACTTACGCATAA 59.875 43.478 0.00 0.00 32.97 1.90
251 252 2.672381 GCCGTTGGTTTACTTACGCATA 59.328 45.455 0.00 0.00 32.97 3.14
252 253 1.465777 GCCGTTGGTTTACTTACGCAT 59.534 47.619 0.00 0.00 32.97 4.73
253 254 0.867086 GCCGTTGGTTTACTTACGCA 59.133 50.000 0.00 0.00 32.97 5.24
254 255 1.136169 CAGCCGTTGGTTTACTTACGC 60.136 52.381 0.00 0.00 32.97 4.42
255 256 1.461897 CCAGCCGTTGGTTTACTTACG 59.538 52.381 0.00 0.00 42.41 3.18
266 267 1.534163 CATCTGCATATCCAGCCGTTG 59.466 52.381 0.00 0.00 32.87 4.10
267 268 1.417517 TCATCTGCATATCCAGCCGTT 59.582 47.619 0.00 0.00 32.87 4.44
268 269 1.001746 CTCATCTGCATATCCAGCCGT 59.998 52.381 0.00 0.00 32.87 5.68
269 270 1.723220 CTCATCTGCATATCCAGCCG 58.277 55.000 0.00 0.00 32.87 5.52
270 271 1.003349 AGCTCATCTGCATATCCAGCC 59.997 52.381 8.29 0.00 34.99 4.85
271 272 2.476126 AGCTCATCTGCATATCCAGC 57.524 50.000 4.96 4.96 34.99 4.85
272 273 5.064558 AGAAAAGCTCATCTGCATATCCAG 58.935 41.667 0.70 0.00 34.99 3.86
273 274 5.045012 AGAAAAGCTCATCTGCATATCCA 57.955 39.130 0.70 0.00 34.99 3.41
274 275 6.933521 TCTTAGAAAAGCTCATCTGCATATCC 59.066 38.462 10.62 0.00 34.99 2.59
275 276 7.959689 TCTTAGAAAAGCTCATCTGCATATC 57.040 36.000 10.62 0.00 34.99 1.63
276 277 8.155510 TGATCTTAGAAAAGCTCATCTGCATAT 58.844 33.333 10.62 0.00 33.92 1.78
277 278 7.503549 TGATCTTAGAAAAGCTCATCTGCATA 58.496 34.615 10.62 0.00 33.92 3.14
278 279 6.354938 TGATCTTAGAAAAGCTCATCTGCAT 58.645 36.000 10.62 1.64 33.92 3.96
279 280 5.737860 TGATCTTAGAAAAGCTCATCTGCA 58.262 37.500 10.62 0.00 33.92 4.41
280 281 5.277442 GCTGATCTTAGAAAAGCTCATCTGC 60.277 44.000 10.62 2.84 37.27 4.26
281 282 6.018588 CAGCTGATCTTAGAAAAGCTCATCTG 60.019 42.308 8.42 8.52 41.68 2.90
282 283 6.050432 CAGCTGATCTTAGAAAAGCTCATCT 58.950 40.000 8.42 6.48 42.16 2.90
283 284 5.236911 CCAGCTGATCTTAGAAAAGCTCATC 59.763 44.000 17.39 0.00 42.16 2.92
284 285 5.124645 CCAGCTGATCTTAGAAAAGCTCAT 58.875 41.667 17.39 0.00 42.16 2.90
285 286 4.511527 CCAGCTGATCTTAGAAAAGCTCA 58.488 43.478 17.39 1.48 42.16 4.26
286 287 3.312146 GCCAGCTGATCTTAGAAAAGCTC 59.688 47.826 17.39 5.99 42.16 4.09
287 288 3.054508 AGCCAGCTGATCTTAGAAAAGCT 60.055 43.478 17.39 13.94 44.83 3.74
288 289 3.065095 CAGCCAGCTGATCTTAGAAAAGC 59.935 47.826 17.39 5.10 46.30 3.51
289 290 4.511527 TCAGCCAGCTGATCTTAGAAAAG 58.488 43.478 18.14 0.00 46.80 2.27
290 291 4.558226 TCAGCCAGCTGATCTTAGAAAA 57.442 40.909 18.14 0.00 46.80 2.29
301 302 2.202851 CTAGCCGTCAGCCAGCTG 60.203 66.667 13.54 13.54 45.47 4.24
304 305 4.880537 CCGCTAGCCGTCAGCCAG 62.881 72.222 9.66 0.00 45.47 4.85
314 315 2.659610 CATAGGGAGGCCGCTAGC 59.340 66.667 6.40 4.06 40.49 3.42
315 316 0.251653 TACCATAGGGAGGCCGCTAG 60.252 60.000 6.40 0.00 40.49 3.42
316 317 0.412244 ATACCATAGGGAGGCCGCTA 59.588 55.000 6.40 0.00 41.24 4.26
317 318 0.412244 TATACCATAGGGAGGCCGCT 59.588 55.000 6.40 0.00 39.12 5.52
318 319 0.535797 GTATACCATAGGGAGGCCGC 59.464 60.000 0.00 0.00 38.05 6.53
319 320 1.933021 TGTATACCATAGGGAGGCCG 58.067 55.000 0.00 0.00 38.05 6.13
320 321 6.576778 AATAATGTATACCATAGGGAGGCC 57.423 41.667 0.00 0.00 38.05 5.19
321 322 8.934697 TGATAATAATGTATACCATAGGGAGGC 58.065 37.037 0.00 0.00 38.05 4.70
358 359 9.640963 GGCTAGTTGTATCTAAATGATAATCGT 57.359 33.333 0.00 0.00 39.15 3.73
359 360 9.862371 AGGCTAGTTGTATCTAAATGATAATCG 57.138 33.333 0.00 0.00 39.15 3.34
371 372 8.978472 TGATGTTTTAGTAGGCTAGTTGTATCT 58.022 33.333 7.27 0.00 0.00 1.98
372 373 9.765795 ATGATGTTTTAGTAGGCTAGTTGTATC 57.234 33.333 7.27 6.13 0.00 2.24
381 382 9.507329 CCAACATATATGATGTTTTAGTAGGCT 57.493 33.333 19.63 0.00 39.94 4.58
382 383 9.502091 TCCAACATATATGATGTTTTAGTAGGC 57.498 33.333 19.63 0.00 39.94 3.93
386 387 8.836413 CCGTTCCAACATATATGATGTTTTAGT 58.164 33.333 19.63 0.00 39.94 2.24
387 388 9.051679 TCCGTTCCAACATATATGATGTTTTAG 57.948 33.333 19.63 5.02 39.94 1.85
388 389 8.966069 TCCGTTCCAACATATATGATGTTTTA 57.034 30.769 19.63 0.97 39.94 1.52
389 390 7.013274 CCTCCGTTCCAACATATATGATGTTTT 59.987 37.037 19.63 0.00 39.94 2.43
390 391 6.486657 CCTCCGTTCCAACATATATGATGTTT 59.513 38.462 19.63 0.12 39.94 2.83
391 392 5.997746 CCTCCGTTCCAACATATATGATGTT 59.002 40.000 19.63 3.03 42.38 2.71
392 393 5.071788 ACCTCCGTTCCAACATATATGATGT 59.928 40.000 19.63 0.00 0.00 3.06
393 394 5.551233 ACCTCCGTTCCAACATATATGATG 58.449 41.667 19.63 16.77 0.00 3.07
394 395 5.825593 ACCTCCGTTCCAACATATATGAT 57.174 39.130 19.63 4.54 0.00 2.45
395 396 5.836898 AGTACCTCCGTTCCAACATATATGA 59.163 40.000 19.63 0.00 0.00 2.15
396 397 6.015350 AGAGTACCTCCGTTCCAACATATATG 60.015 42.308 11.29 11.29 0.00 1.78
397 398 6.075984 AGAGTACCTCCGTTCCAACATATAT 58.924 40.000 0.00 0.00 0.00 0.86
398 399 5.452255 AGAGTACCTCCGTTCCAACATATA 58.548 41.667 0.00 0.00 0.00 0.86
399 400 4.287552 AGAGTACCTCCGTTCCAACATAT 58.712 43.478 0.00 0.00 0.00 1.78
400 401 3.698040 GAGAGTACCTCCGTTCCAACATA 59.302 47.826 0.00 0.00 35.87 2.29
401 402 2.496470 GAGAGTACCTCCGTTCCAACAT 59.504 50.000 0.00 0.00 35.87 2.71
402 403 1.891150 GAGAGTACCTCCGTTCCAACA 59.109 52.381 0.00 0.00 35.87 3.33
403 404 2.164017 GAGAGAGTACCTCCGTTCCAAC 59.836 54.545 7.50 0.00 42.97 3.77
404 405 2.444421 GAGAGAGTACCTCCGTTCCAA 58.556 52.381 7.50 0.00 42.97 3.53
405 406 1.340795 GGAGAGAGTACCTCCGTTCCA 60.341 57.143 7.50 0.00 42.97 3.53
406 407 1.391577 GGAGAGAGTACCTCCGTTCC 58.608 60.000 7.50 5.50 42.97 3.62
411 412 2.423446 AGAACGGAGAGAGTACCTCC 57.577 55.000 6.59 6.59 45.16 4.30
412 413 5.893897 TTTTAGAACGGAGAGAGTACCTC 57.106 43.478 3.84 3.84 42.28 3.85
413 414 7.344913 TCTATTTTAGAACGGAGAGAGTACCT 58.655 38.462 0.00 0.00 0.00 3.08
414 415 7.565323 TCTATTTTAGAACGGAGAGAGTACC 57.435 40.000 0.00 0.00 0.00 3.34
415 416 8.838365 TCATCTATTTTAGAACGGAGAGAGTAC 58.162 37.037 0.00 0.00 38.50 2.73
416 417 8.838365 GTCATCTATTTTAGAACGGAGAGAGTA 58.162 37.037 0.00 0.00 38.50 2.59
417 418 7.201839 GGTCATCTATTTTAGAACGGAGAGAGT 60.202 40.741 0.00 0.00 38.50 3.24
418 419 7.142680 GGTCATCTATTTTAGAACGGAGAGAG 58.857 42.308 0.00 0.00 38.50 3.20
419 420 6.040616 GGGTCATCTATTTTAGAACGGAGAGA 59.959 42.308 0.00 0.00 38.50 3.10
420 421 6.183360 TGGGTCATCTATTTTAGAACGGAGAG 60.183 42.308 0.00 0.00 38.50 3.20
421 422 5.659525 TGGGTCATCTATTTTAGAACGGAGA 59.340 40.000 0.00 0.00 38.50 3.71
422 423 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
423 424 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
424 425 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
425 426 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
431 432 8.088365 GCTTTGTAAAGTTGGGTCATCTATTTT 58.912 33.333 6.27 0.00 38.28 1.82
432 433 7.451566 AGCTTTGTAAAGTTGGGTCATCTATTT 59.548 33.333 6.27 0.00 38.28 1.40
433 434 6.948309 AGCTTTGTAAAGTTGGGTCATCTATT 59.052 34.615 6.27 0.00 38.28 1.73
434 435 6.485171 AGCTTTGTAAAGTTGGGTCATCTAT 58.515 36.000 6.27 0.00 38.28 1.98
435 436 5.876357 AGCTTTGTAAAGTTGGGTCATCTA 58.124 37.500 6.27 0.00 38.28 1.98
436 437 4.729868 AGCTTTGTAAAGTTGGGTCATCT 58.270 39.130 6.27 0.00 38.28 2.90
437 438 5.222631 CAAGCTTTGTAAAGTTGGGTCATC 58.777 41.667 0.00 0.00 38.28 2.92
438 439 4.039124 CCAAGCTTTGTAAAGTTGGGTCAT 59.961 41.667 19.66 0.00 40.06 3.06
439 440 3.383185 CCAAGCTTTGTAAAGTTGGGTCA 59.617 43.478 19.66 0.00 40.06 4.02
440 441 3.383505 ACCAAGCTTTGTAAAGTTGGGTC 59.616 43.478 25.14 6.53 46.77 4.46
441 442 3.371034 ACCAAGCTTTGTAAAGTTGGGT 58.629 40.909 25.14 20.36 45.41 4.51
442 443 3.383185 TGACCAAGCTTTGTAAAGTTGGG 59.617 43.478 25.14 19.91 43.68 4.12
443 444 4.647424 TGACCAAGCTTTGTAAAGTTGG 57.353 40.909 22.65 22.65 44.09 3.77
444 445 6.076981 AGATGACCAAGCTTTGTAAAGTTG 57.923 37.500 2.67 8.64 38.28 3.16
445 446 8.409358 AATAGATGACCAAGCTTTGTAAAGTT 57.591 30.769 2.67 0.00 38.28 2.66
446 447 8.409358 AAATAGATGACCAAGCTTTGTAAAGT 57.591 30.769 2.67 0.00 38.28 2.66
449 450 9.733556 TCTAAAATAGATGACCAAGCTTTGTAA 57.266 29.630 2.67 0.00 0.00 2.41
450 451 9.733556 TTCTAAAATAGATGACCAAGCTTTGTA 57.266 29.630 2.67 0.00 34.22 2.41
451 452 8.515414 GTTCTAAAATAGATGACCAAGCTTTGT 58.485 33.333 2.23 2.23 34.22 2.83
452 453 7.970614 GGTTCTAAAATAGATGACCAAGCTTTG 59.029 37.037 0.00 0.00 36.27 2.77
453 454 7.148239 CGGTTCTAAAATAGATGACCAAGCTTT 60.148 37.037 0.00 0.00 36.10 3.51
454 455 6.316390 CGGTTCTAAAATAGATGACCAAGCTT 59.684 38.462 0.00 0.00 36.10 3.74
455 456 5.817816 CGGTTCTAAAATAGATGACCAAGCT 59.182 40.000 8.30 0.00 36.10 3.74
456 457 5.815740 TCGGTTCTAAAATAGATGACCAAGC 59.184 40.000 8.30 0.00 36.10 4.01
457 458 6.480320 CCTCGGTTCTAAAATAGATGACCAAG 59.520 42.308 8.30 1.18 36.10 3.61
458 459 6.346096 CCTCGGTTCTAAAATAGATGACCAA 58.654 40.000 8.30 0.00 36.10 3.67
459 460 5.163343 CCCTCGGTTCTAAAATAGATGACCA 60.163 44.000 8.30 0.00 36.10 4.02
460 461 5.070047 TCCCTCGGTTCTAAAATAGATGACC 59.930 44.000 0.17 0.17 34.02 4.02
461 462 6.158023 TCCCTCGGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
462 463 5.897824 ACTCCCTCGGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
463 464 6.163135 ACTCCCTCGGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
464 465 7.068061 ACTACTCCCTCGGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
465 466 6.430007 ACTACTCCCTCGGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
466 467 6.712179 ACTACTCCCTCGGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
467 468 7.577303 TCTACTACTCCCTCGGTTCTAAAATA 58.423 38.462 0.00 0.00 0.00 1.40
468 469 6.430007 TCTACTACTCCCTCGGTTCTAAAAT 58.570 40.000 0.00 0.00 0.00 1.82
469 470 5.819991 TCTACTACTCCCTCGGTTCTAAAA 58.180 41.667 0.00 0.00 0.00 1.52
470 471 5.441718 TCTACTACTCCCTCGGTTCTAAA 57.558 43.478 0.00 0.00 0.00 1.85
471 472 5.643421 ATCTACTACTCCCTCGGTTCTAA 57.357 43.478 0.00 0.00 0.00 2.10
472 473 5.843421 AGTATCTACTACTCCCTCGGTTCTA 59.157 44.000 0.00 0.00 35.73 2.10
473 474 4.659835 AGTATCTACTACTCCCTCGGTTCT 59.340 45.833 0.00 0.00 35.73 3.01
474 475 4.971939 AGTATCTACTACTCCCTCGGTTC 58.028 47.826 0.00 0.00 35.73 3.62
486 487 6.713903 CCGAGGGTTTCATGTAGTATCTACTA 59.286 42.308 8.13 0.00 37.73 1.82
487 488 5.535406 CCGAGGGTTTCATGTAGTATCTACT 59.465 44.000 8.13 0.00 40.24 2.57
488 489 5.301298 ACCGAGGGTTTCATGTAGTATCTAC 59.699 44.000 0.00 0.59 27.29 2.59
489 490 5.452255 ACCGAGGGTTTCATGTAGTATCTA 58.548 41.667 0.00 0.00 27.29 1.98
490 491 4.287552 ACCGAGGGTTTCATGTAGTATCT 58.712 43.478 0.00 0.00 27.29 1.98
491 492 4.667519 ACCGAGGGTTTCATGTAGTATC 57.332 45.455 0.00 0.00 27.29 2.24
492 493 4.587684 CCTACCGAGGGTTTCATGTAGTAT 59.412 45.833 0.00 0.00 39.48 2.12
493 494 3.956199 CCTACCGAGGGTTTCATGTAGTA 59.044 47.826 0.00 0.00 39.48 1.82
494 495 2.764572 CCTACCGAGGGTTTCATGTAGT 59.235 50.000 0.00 0.00 39.48 2.73
495 496 3.028850 TCCTACCGAGGGTTTCATGTAG 58.971 50.000 0.00 0.00 43.94 2.74
496 497 2.762327 GTCCTACCGAGGGTTTCATGTA 59.238 50.000 0.00 0.00 43.94 2.29
497 498 1.553704 GTCCTACCGAGGGTTTCATGT 59.446 52.381 0.00 0.00 43.94 3.21
498 499 1.831736 AGTCCTACCGAGGGTTTCATG 59.168 52.381 0.00 0.00 43.94 3.07
499 500 2.249309 AGTCCTACCGAGGGTTTCAT 57.751 50.000 0.00 0.00 43.94 2.57
500 501 2.450476 GTAGTCCTACCGAGGGTTTCA 58.550 52.381 0.00 0.00 43.94 2.69
501 502 1.403323 CGTAGTCCTACCGAGGGTTTC 59.597 57.143 0.00 0.00 43.94 2.78
502 503 1.467920 CGTAGTCCTACCGAGGGTTT 58.532 55.000 0.00 0.00 43.94 3.27
503 504 0.394899 CCGTAGTCCTACCGAGGGTT 60.395 60.000 0.00 0.00 43.94 4.11
504 505 1.225704 CCGTAGTCCTACCGAGGGT 59.774 63.158 0.00 0.00 43.94 4.34
505 506 0.110104 ATCCGTAGTCCTACCGAGGG 59.890 60.000 0.00 0.00 43.94 4.30
506 507 1.521580 GATCCGTAGTCCTACCGAGG 58.478 60.000 0.00 0.00 45.35 4.63
507 508 1.521580 GGATCCGTAGTCCTACCGAG 58.478 60.000 0.00 0.00 32.61 4.63
508 509 0.109342 GGGATCCGTAGTCCTACCGA 59.891 60.000 5.45 0.00 36.00 4.69
509 510 0.110104 AGGGATCCGTAGTCCTACCG 59.890 60.000 4.80 0.00 36.00 4.02
510 511 2.107204 TGTAGGGATCCGTAGTCCTACC 59.893 54.545 14.44 2.17 46.71 3.18
512 513 3.396946 ACATGTAGGGATCCGTAGTCCTA 59.603 47.826 14.44 1.84 36.00 2.94
513 514 2.177233 ACATGTAGGGATCCGTAGTCCT 59.823 50.000 14.44 2.85 36.00 3.85
514 515 2.296471 CACATGTAGGGATCCGTAGTCC 59.704 54.545 14.44 4.23 34.92 3.85
515 516 2.957006 ACACATGTAGGGATCCGTAGTC 59.043 50.000 14.44 4.92 0.00 2.59
516 517 2.693591 CACACATGTAGGGATCCGTAGT 59.306 50.000 14.44 6.71 0.00 2.73
517 518 2.956333 TCACACATGTAGGGATCCGTAG 59.044 50.000 14.44 6.09 0.00 3.51
518 519 3.021177 TCACACATGTAGGGATCCGTA 57.979 47.619 10.15 10.15 0.00 4.02
519 520 1.860641 TCACACATGTAGGGATCCGT 58.139 50.000 12.41 12.41 0.00 4.69
520 521 2.826428 CTTCACACATGTAGGGATCCG 58.174 52.381 5.45 0.00 0.00 4.18
521 522 2.565841 GCTTCACACATGTAGGGATCC 58.434 52.381 1.92 1.92 0.00 3.36
522 523 2.159099 TCGCTTCACACATGTAGGGATC 60.159 50.000 8.57 0.00 39.33 3.36
523 524 1.831106 TCGCTTCACACATGTAGGGAT 59.169 47.619 8.57 0.00 39.33 3.85
524 525 1.204704 CTCGCTTCACACATGTAGGGA 59.795 52.381 11.35 11.35 41.09 4.20
525 526 1.204704 TCTCGCTTCACACATGTAGGG 59.795 52.381 0.00 0.55 37.47 3.53
526 527 2.164422 TCTCTCGCTTCACACATGTAGG 59.836 50.000 0.00 0.00 0.00 3.18
527 528 3.494045 TCTCTCGCTTCACACATGTAG 57.506 47.619 0.00 0.00 0.00 2.74
528 529 3.255888 ACTTCTCTCGCTTCACACATGTA 59.744 43.478 0.00 0.00 0.00 2.29
529 530 2.036475 ACTTCTCTCGCTTCACACATGT 59.964 45.455 0.00 0.00 0.00 3.21
530 531 2.681706 ACTTCTCTCGCTTCACACATG 58.318 47.619 0.00 0.00 0.00 3.21
531 532 3.321497 GAACTTCTCTCGCTTCACACAT 58.679 45.455 0.00 0.00 0.00 3.21
532 533 2.545952 GGAACTTCTCTCGCTTCACACA 60.546 50.000 0.00 0.00 0.00 3.72
533 534 2.062519 GGAACTTCTCTCGCTTCACAC 58.937 52.381 0.00 0.00 0.00 3.82
534 535 1.686587 TGGAACTTCTCTCGCTTCACA 59.313 47.619 0.00 0.00 0.00 3.58
535 536 2.440539 TGGAACTTCTCTCGCTTCAC 57.559 50.000 0.00 0.00 0.00 3.18
536 537 2.548067 GGTTGGAACTTCTCTCGCTTCA 60.548 50.000 0.00 0.00 0.00 3.02
537 538 2.070028 GGTTGGAACTTCTCTCGCTTC 58.930 52.381 0.00 0.00 0.00 3.86
538 539 1.270893 GGGTTGGAACTTCTCTCGCTT 60.271 52.381 0.00 0.00 0.00 4.68
539 540 0.321996 GGGTTGGAACTTCTCTCGCT 59.678 55.000 0.00 0.00 0.00 4.93
540 541 0.321996 AGGGTTGGAACTTCTCTCGC 59.678 55.000 0.00 0.00 0.00 5.03
541 542 2.037251 TGAAGGGTTGGAACTTCTCTCG 59.963 50.000 0.00 0.00 42.67 4.04
542 543 3.771577 TGAAGGGTTGGAACTTCTCTC 57.228 47.619 0.00 0.00 42.67 3.20
543 544 3.748989 GCTTGAAGGGTTGGAACTTCTCT 60.749 47.826 0.00 0.00 42.67 3.10
544 545 2.554462 GCTTGAAGGGTTGGAACTTCTC 59.446 50.000 0.00 0.00 42.67 2.87
545 546 2.587522 GCTTGAAGGGTTGGAACTTCT 58.412 47.619 0.00 0.00 42.67 2.85
546 547 1.613925 GGCTTGAAGGGTTGGAACTTC 59.386 52.381 0.00 0.00 42.57 3.01
547 548 1.063266 TGGCTTGAAGGGTTGGAACTT 60.063 47.619 0.00 0.00 0.00 2.66
548 549 0.555769 TGGCTTGAAGGGTTGGAACT 59.444 50.000 0.00 0.00 0.00 3.01
549 550 1.408969 TTGGCTTGAAGGGTTGGAAC 58.591 50.000 0.00 0.00 0.00 3.62
550 551 2.247358 GATTGGCTTGAAGGGTTGGAA 58.753 47.619 0.00 0.00 0.00 3.53
551 552 1.549950 GGATTGGCTTGAAGGGTTGGA 60.550 52.381 0.00 0.00 0.00 3.53
552 553 0.897621 GGATTGGCTTGAAGGGTTGG 59.102 55.000 0.00 0.00 0.00 3.77
553 554 1.273327 GTGGATTGGCTTGAAGGGTTG 59.727 52.381 0.00 0.00 0.00 3.77
554 555 1.632589 GTGGATTGGCTTGAAGGGTT 58.367 50.000 0.00 0.00 0.00 4.11
555 556 0.251787 GGTGGATTGGCTTGAAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
556 557 1.315257 CGGTGGATTGGCTTGAAGGG 61.315 60.000 0.00 0.00 0.00 3.95
557 558 1.937546 GCGGTGGATTGGCTTGAAGG 61.938 60.000 0.00 0.00 0.00 3.46
558 559 1.508088 GCGGTGGATTGGCTTGAAG 59.492 57.895 0.00 0.00 0.00 3.02
559 560 2.331893 CGCGGTGGATTGGCTTGAA 61.332 57.895 0.00 0.00 0.00 2.69
560 561 2.745884 CGCGGTGGATTGGCTTGA 60.746 61.111 0.00 0.00 0.00 3.02
561 562 3.055719 ACGCGGTGGATTGGCTTG 61.056 61.111 12.47 0.00 0.00 4.01
562 563 3.055719 CACGCGGTGGATTGGCTT 61.056 61.111 12.47 0.00 0.00 4.35
563 564 4.329545 ACACGCGGTGGATTGGCT 62.330 61.111 12.47 0.00 37.94 4.75
564 565 3.799755 GACACGCGGTGGATTGGC 61.800 66.667 12.47 0.00 37.94 4.52
565 566 3.124921 GGACACGCGGTGGATTGG 61.125 66.667 12.47 0.00 37.94 3.16
566 567 2.047274 AGGACACGCGGTGGATTG 60.047 61.111 12.47 0.00 37.94 2.67
567 568 2.047274 CAGGACACGCGGTGGATT 60.047 61.111 12.47 0.00 37.94 3.01
568 569 3.311110 ACAGGACACGCGGTGGAT 61.311 61.111 12.47 0.00 37.94 3.41
569 570 4.293648 CACAGGACACGCGGTGGA 62.294 66.667 12.47 0.00 37.94 4.02
571 572 4.293648 TCCACAGGACACGCGGTG 62.294 66.667 12.47 9.20 39.75 4.94
580 581 1.152419 TTGACTCCGGTCCACAGGA 60.152 57.895 0.00 0.00 41.47 3.86
581 582 1.004918 GTTGACTCCGGTCCACAGG 60.005 63.158 0.00 0.00 41.47 4.00
582 583 1.254026 TAGTTGACTCCGGTCCACAG 58.746 55.000 0.00 0.00 39.62 3.66
583 584 1.707106 TTAGTTGACTCCGGTCCACA 58.293 50.000 0.00 0.00 39.62 4.17
584 585 2.618053 CATTAGTTGACTCCGGTCCAC 58.382 52.381 0.00 0.00 41.47 4.02
585 586 1.553248 CCATTAGTTGACTCCGGTCCA 59.447 52.381 0.00 0.00 41.47 4.02
586 587 1.553704 ACCATTAGTTGACTCCGGTCC 59.446 52.381 0.00 0.00 41.47 4.46
587 588 4.667519 ATACCATTAGTTGACTCCGGTC 57.332 45.455 0.00 0.00 42.42 4.79
588 589 4.468510 TGAATACCATTAGTTGACTCCGGT 59.531 41.667 0.00 0.00 0.00 5.28
597 598 7.556275 ACCGACATGAATTGAATACCATTAGTT 59.444 33.333 0.00 0.00 0.00 2.24
658 659 4.758561 AGTTCGACGAAATTCAAGAAACG 58.241 39.130 12.67 0.00 0.00 3.60
661 662 5.558273 GCTCAAGTTCGACGAAATTCAAGAA 60.558 40.000 23.32 8.85 27.08 2.52
662 663 4.084537 GCTCAAGTTCGACGAAATTCAAGA 60.085 41.667 23.32 16.42 27.08 3.02
663 664 4.144555 GCTCAAGTTCGACGAAATTCAAG 58.855 43.478 19.32 18.72 27.08 3.02
664 665 3.059188 GGCTCAAGTTCGACGAAATTCAA 60.059 43.478 19.32 10.44 27.08 2.69
665 666 2.478894 GGCTCAAGTTCGACGAAATTCA 59.521 45.455 19.32 7.25 27.08 2.57
684 703 0.454452 GCCGACTCGATGTTTTTGGC 60.454 55.000 0.00 0.00 0.00 4.52
686 705 1.135972 CAGGCCGACTCGATGTTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
687 706 1.156736 CAGGCCGACTCGATGTTTTT 58.843 50.000 0.00 0.00 0.00 1.94
688 707 1.298859 GCAGGCCGACTCGATGTTTT 61.299 55.000 0.00 0.00 0.00 2.43
718 754 0.107703 CAGCCCTTCGTATTGCTGGA 60.108 55.000 10.45 0.00 45.69 3.86
721 757 1.224592 CCCAGCCCTTCGTATTGCT 59.775 57.895 0.00 0.00 33.52 3.91
722 758 0.179018 ATCCCAGCCCTTCGTATTGC 60.179 55.000 0.00 0.00 0.00 3.56
725 761 2.530701 CTAGATCCCAGCCCTTCGTAT 58.469 52.381 0.00 0.00 0.00 3.06
726 762 1.480683 CCTAGATCCCAGCCCTTCGTA 60.481 57.143 0.00 0.00 0.00 3.43
760 907 3.323758 TTGGGAATCCGTGGCTCCG 62.324 63.158 0.00 0.00 35.24 4.63
871 1019 1.808390 GTGCGACCGCTTTATCCGT 60.808 57.895 15.61 0.00 42.51 4.69
903 1051 0.894184 AGAGCAGAGTCGGTTCCGAA 60.894 55.000 15.59 0.00 40.26 4.30
907 1055 1.513622 GGGAGAGCAGAGTCGGTTC 59.486 63.158 0.00 0.00 0.00 3.62
1291 1444 0.243636 TCATCGTCGAGCAGCTTGAA 59.756 50.000 14.44 0.00 0.00 2.69
1348 1501 1.915614 TTAGAGGACGACGCGGTGTC 61.916 60.000 20.56 20.56 44.53 3.67
1349 1502 1.968017 TTAGAGGACGACGCGGTGT 60.968 57.895 12.47 8.39 0.00 4.16
1370 1523 1.199624 GAAACGCTTGTTGCTGTTGG 58.800 50.000 0.00 0.00 38.01 3.77
1380 1533 0.239347 CCTTCTGCCTGAAACGCTTG 59.761 55.000 0.00 0.00 33.79 4.01
1501 1654 4.175962 TCTAGTTCCTCCCCACAAGAATT 58.824 43.478 0.00 0.00 0.00 2.17
1507 1660 1.007238 CTCCTCTAGTTCCTCCCCACA 59.993 57.143 0.00 0.00 0.00 4.17
1662 1815 2.125106 GTGTCGCCCCTGTCCATC 60.125 66.667 0.00 0.00 0.00 3.51
1707 1860 1.749258 CCGCTTTTCCAGGTAGGCC 60.749 63.158 0.00 0.00 37.29 5.19
1710 1863 2.762535 TCTTCCGCTTTTCCAGGTAG 57.237 50.000 0.00 0.00 0.00 3.18
1762 1915 1.914700 GAAGATGAGCTCGTTGTCGAC 59.085 52.381 10.42 9.11 41.35 4.20
1791 1944 0.721718 CTTCGGCGTTGGTCATCTTC 59.278 55.000 6.85 0.00 0.00 2.87
1814 1967 0.453390 CTTCTTGCGCCTGAATTCCC 59.547 55.000 4.18 0.00 0.00 3.97
1914 2067 1.573829 GATCCACGTTTTCTGCGGCA 61.574 55.000 1.29 1.29 0.00 5.69
2115 2271 2.457366 AGTCGACCATGTCTTCCAAC 57.543 50.000 13.01 0.00 0.00 3.77
2236 2392 1.208293 GGGCAGATTCTTCCTCTCGTT 59.792 52.381 2.30 0.00 0.00 3.85
2530 2686 3.490933 CCGTCCGTCATGTACTTGATCAT 60.491 47.826 13.92 0.00 0.00 2.45
2781 2937 0.611714 GGATGTCCACCTTGTACCGT 59.388 55.000 0.00 0.00 35.64 4.83
2841 2997 2.842462 TGCAGGACCGTGACCACT 60.842 61.111 0.00 0.00 0.00 4.00
2954 3110 2.449031 AATCTTGCTGCCGACCGTCA 62.449 55.000 0.00 0.00 0.00 4.35
3026 3182 1.475441 CGTCGGCTCGAAGATCTTGC 61.475 60.000 14.00 10.21 37.53 4.01
3613 3769 0.545787 TCCTTGGGCCGGTAGAAGAA 60.546 55.000 1.90 0.00 0.00 2.52
3832 3988 0.248990 GAGCAGTGCTCGATCTCCAG 60.249 60.000 28.32 0.00 45.85 3.86
3897 4053 4.143363 GCGGCGTTGCGGAAGTAC 62.143 66.667 9.37 0.00 0.00 2.73
4041 4197 0.811616 CCTGCCGCATGTACTCCTTC 60.812 60.000 0.00 0.00 0.00 3.46
4089 4245 3.881092 ATAGTGCGGCGCGATCTCG 62.881 63.158 28.09 8.86 43.27 4.04
4135 4291 1.543358 CTTGGCCTTCTTCTTTGGCTC 59.457 52.381 3.32 0.00 45.45 4.70
4171 4327 1.534235 AGGTTCAGGTCTGCCTCGT 60.534 57.895 0.00 0.00 44.97 4.18
4179 4335 5.175859 TGAAATATTGTCGAGGTTCAGGTC 58.824 41.667 0.00 0.00 0.00 3.85
4265 4480 7.208064 AGAAGCTTATTTGGGGACATACTAA 57.792 36.000 0.00 0.00 42.32 2.24
4266 4481 6.824958 AGAAGCTTATTTGGGGACATACTA 57.175 37.500 0.00 0.00 42.32 1.82
4493 4774 9.830975 ACTTTAATTTAACTGATGTGCCTTTTT 57.169 25.926 0.00 0.00 0.00 1.94
5054 5350 3.700577 CGGCAAAAGACGCATCATT 57.299 47.368 0.00 0.00 0.00 2.57
5121 5417 4.712476 AGGCTTCACATGAATATCAGACC 58.288 43.478 0.00 0.00 33.01 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.