Multiple sequence alignment - TraesCS1D01G242500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G242500 chr1D 100.000 5844 0 0 1 5844 332931475 332937318 0.000000e+00 10792.0
1 TraesCS1D01G242500 chr1D 98.228 790 14 0 5055 5844 9819821 9820610 0.000000e+00 1382.0
2 TraesCS1D01G242500 chr1D 92.911 395 11 8 18 395 416482191 416482585 5.110000e-155 558.0
3 TraesCS1D01G242500 chr1D 77.595 790 172 5 5057 5844 376661291 376660505 1.910000e-129 473.0
4 TraesCS1D01G242500 chr1A 93.755 2642 99 28 1123 3736 430592953 430595556 0.000000e+00 3904.0
5 TraesCS1D01G242500 chr1A 96.096 1127 32 6 3939 5056 430599774 430600897 0.000000e+00 1827.0
6 TraesCS1D01G242500 chr1A 87.280 511 33 19 534 1040 430592175 430592657 6.620000e-154 555.0
7 TraesCS1D01G242500 chr1B 94.479 1793 65 14 1756 3526 448245024 448246804 0.000000e+00 2732.0
8 TraesCS1D01G242500 chr1B 93.253 1571 59 24 3523 5053 448246964 448248527 0.000000e+00 2270.0
9 TraesCS1D01G242500 chr1B 93.520 1034 30 15 702 1732 448244035 448245034 0.000000e+00 1504.0
10 TraesCS1D01G242500 chr1B 71.646 790 201 21 5067 5844 7235969 7235191 4.620000e-46 196.0
11 TraesCS1D01G242500 chr6A 95.949 790 31 1 5055 5844 375397747 375398535 0.000000e+00 1280.0
12 TraesCS1D01G242500 chr3A 95.051 788 39 0 5055 5842 196664711 196663924 0.000000e+00 1240.0
13 TraesCS1D01G242500 chr3A 71.840 799 200 20 5054 5841 153621343 153622127 7.680000e-49 206.0
14 TraesCS1D01G242500 chr3A 93.182 88 6 0 4138 4225 700747710 700747623 4.750000e-26 130.0
15 TraesCS1D01G242500 chr6D 93.893 393 7 7 17 393 34523662 34524053 1.410000e-160 577.0
16 TraesCS1D01G242500 chr6D 87.629 97 11 1 4136 4231 372943668 372943764 1.720000e-20 111.0
17 TraesCS1D01G242500 chr5D 93.671 395 9 2 16 394 19111428 19111034 1.410000e-160 577.0
18 TraesCS1D01G242500 chr5D 84.518 394 42 9 17 395 98503045 98503434 7.150000e-99 372.0
19 TraesCS1D01G242500 chr2B 92.574 404 11 5 15 400 435373546 435373948 3.950000e-156 562.0
20 TraesCS1D01G242500 chr2B 88.747 391 26 5 20 394 120240293 120239905 4.130000e-126 462.0
21 TraesCS1D01G242500 chr2B 71.985 796 205 17 5054 5841 697373617 697374402 9.860000e-53 219.0
22 TraesCS1D01G242500 chr2B 71.824 795 208 15 5054 5841 697336120 697336905 4.590000e-51 213.0
23 TraesCS1D01G242500 chr2B 71.884 658 173 12 5190 5841 697354877 697355528 4.650000e-41 180.0
24 TraesCS1D01G242500 chr3D 92.658 395 12 3 16 393 587302395 587302001 2.380000e-153 553.0
25 TraesCS1D01G242500 chr5B 93.280 372 22 3 18 388 270324642 270325011 3.980000e-151 545.0
26 TraesCS1D01G242500 chr5B 91.247 377 28 5 18 391 357159628 357159254 5.220000e-140 508.0
27 TraesCS1D01G242500 chr2A 92.329 365 24 4 21 385 522247254 522247614 3.120000e-142 516.0
28 TraesCS1D01G242500 chr4B 91.005 378 30 4 17 393 116950923 116951297 1.880000e-139 507.0
29 TraesCS1D01G242500 chr6B 81.156 398 45 9 17 397 570976478 570976094 5.730000e-75 292.0
30 TraesCS1D01G242500 chr5A 71.895 797 203 19 5058 5844 646836098 646835313 1.650000e-50 211.0
31 TraesCS1D01G242500 chr7A 94.253 87 5 0 4136 4222 398924518 398924432 3.670000e-27 134.0
32 TraesCS1D01G242500 chrUn 91.765 85 7 0 4138 4222 478179577 478179661 1.030000e-22 119.0
33 TraesCS1D01G242500 chr7B 91.765 85 7 0 4138 4222 403564456 403564372 1.030000e-22 119.0
34 TraesCS1D01G242500 chr7B 91.765 85 7 0 4138 4222 403730306 403730222 1.030000e-22 119.0
35 TraesCS1D01G242500 chr7B 88.406 69 1 3 326 388 15921900 15921967 6.280000e-10 76.8
36 TraesCS1D01G242500 chr7D 90.805 87 8 0 4136 4222 351583733 351583647 3.700000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G242500 chr1D 332931475 332937318 5843 False 10792.000000 10792 100.000000 1 5844 1 chr1D.!!$F2 5843
1 TraesCS1D01G242500 chr1D 9819821 9820610 789 False 1382.000000 1382 98.228000 5055 5844 1 chr1D.!!$F1 789
2 TraesCS1D01G242500 chr1D 376660505 376661291 786 True 473.000000 473 77.595000 5057 5844 1 chr1D.!!$R1 787
3 TraesCS1D01G242500 chr1A 430592175 430595556 3381 False 2229.500000 3904 90.517500 534 3736 2 chr1A.!!$F2 3202
4 TraesCS1D01G242500 chr1A 430599774 430600897 1123 False 1827.000000 1827 96.096000 3939 5056 1 chr1A.!!$F1 1117
5 TraesCS1D01G242500 chr1B 448244035 448248527 4492 False 2168.666667 2732 93.750667 702 5053 3 chr1B.!!$F1 4351
6 TraesCS1D01G242500 chr6A 375397747 375398535 788 False 1280.000000 1280 95.949000 5055 5844 1 chr6A.!!$F1 789
7 TraesCS1D01G242500 chr3A 196663924 196664711 787 True 1240.000000 1240 95.051000 5055 5842 1 chr3A.!!$R1 787
8 TraesCS1D01G242500 chr3A 153621343 153622127 784 False 206.000000 206 71.840000 5054 5841 1 chr3A.!!$F1 787
9 TraesCS1D01G242500 chr2B 697373617 697374402 785 False 219.000000 219 71.985000 5054 5841 1 chr2B.!!$F4 787
10 TraesCS1D01G242500 chr2B 697336120 697336905 785 False 213.000000 213 71.824000 5054 5841 1 chr2B.!!$F2 787
11 TraesCS1D01G242500 chr5A 646835313 646836098 785 True 211.000000 211 71.895000 5058 5844 1 chr5A.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.105709 AGGGGTGTTTGTTTCCAGGG 60.106 55.0 0.0 0.0 0.00 4.45 F
1062 1076 0.105709 CTCCTCTTCCTCCTCCTCCC 60.106 65.0 0.0 0.0 0.00 4.30 F
1064 1078 0.105709 CCTCTTCCTCCTCCTCCCTC 60.106 65.0 0.0 0.0 0.00 4.30 F
2786 3033 0.460722 TCGGACACTTCACGGAAACA 59.539 50.0 0.0 0.0 0.00 2.83 F
3747 4170 0.179073 GCTATGGTCTGCCGTGTGAT 60.179 55.0 0.0 0.0 37.67 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1732 0.391130 GACCTGGTCTGCACGCATTA 60.391 55.000 19.53 0.0 0.00 1.90 R
2909 3157 1.004277 CTTACCCAAGCTGGCAACCTA 59.996 52.381 0.00 0.0 35.79 3.08 R
3189 3439 7.809806 CGAGTTGCACAATACATATCTCTATGA 59.190 37.037 0.00 0.0 38.49 2.15 R
4677 5135 0.312102 GTCAAGCCTGTGAAGTTGGC 59.688 55.000 0.00 0.0 46.42 4.52 R
5752 6217 2.239654 CCATGGTAAAGCAAGGGAGAGA 59.760 50.000 2.57 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.444629 GAGACTAAACGAAATTTTAAGGGGT 57.555 36.000 0.00 0.00 0.00 4.95
25 26 7.210718 AGACTAAACGAAATTTTAAGGGGTG 57.789 36.000 0.00 0.00 0.00 4.61
26 27 6.774170 AGACTAAACGAAATTTTAAGGGGTGT 59.226 34.615 0.00 0.00 0.00 4.16
27 28 7.286087 AGACTAAACGAAATTTTAAGGGGTGTT 59.714 33.333 0.00 0.00 0.00 3.32
28 29 7.784037 ACTAAACGAAATTTTAAGGGGTGTTT 58.216 30.769 0.00 0.00 0.00 2.83
29 30 6.912203 AAACGAAATTTTAAGGGGTGTTTG 57.088 33.333 0.00 0.00 0.00 2.93
30 31 5.601583 ACGAAATTTTAAGGGGTGTTTGT 57.398 34.783 0.00 0.00 0.00 2.83
31 32 5.979993 ACGAAATTTTAAGGGGTGTTTGTT 58.020 33.333 0.00 0.00 0.00 2.83
32 33 6.408035 ACGAAATTTTAAGGGGTGTTTGTTT 58.592 32.000 0.00 0.00 0.00 2.83
33 34 6.535865 ACGAAATTTTAAGGGGTGTTTGTTTC 59.464 34.615 0.00 0.00 0.00 2.78
34 35 6.018588 CGAAATTTTAAGGGGTGTTTGTTTCC 60.019 38.462 0.00 0.00 0.00 3.13
35 36 5.959583 ATTTTAAGGGGTGTTTGTTTCCA 57.040 34.783 0.00 0.00 0.00 3.53
36 37 5.346181 TTTTAAGGGGTGTTTGTTTCCAG 57.654 39.130 0.00 0.00 0.00 3.86
37 38 1.788229 AAGGGGTGTTTGTTTCCAGG 58.212 50.000 0.00 0.00 0.00 4.45
38 39 0.105709 AGGGGTGTTTGTTTCCAGGG 60.106 55.000 0.00 0.00 0.00 4.45
39 40 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
40 41 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
41 42 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
42 43 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
43 44 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
44 45 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
45 46 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
67 68 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
79 80 8.537049 GACTAGAAAAAGTCCCTTTTAGAGAC 57.463 38.462 0.00 0.00 41.98 3.36
80 81 8.265108 ACTAGAAAAAGTCCCTTTTAGAGACT 57.735 34.615 0.00 0.00 41.98 3.24
101 102 2.275134 TTTTACCAAACGGGAGGGAC 57.725 50.000 0.00 0.00 41.15 4.46
103 104 1.437397 TTACCAAACGGGAGGGACTT 58.563 50.000 0.00 0.00 41.55 3.01
104 105 1.437397 TACCAAACGGGAGGGACTTT 58.563 50.000 0.00 0.00 41.55 2.66
105 106 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
106 107 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
107 108 2.175284 ACCAAACGGGAGGGACTTTTTA 59.825 45.455 0.00 0.00 41.55 1.52
108 109 2.817844 CCAAACGGGAGGGACTTTTTAG 59.182 50.000 0.00 0.00 41.55 1.85
109 110 2.817844 CAAACGGGAGGGACTTTTTAGG 59.182 50.000 0.00 0.00 41.55 2.69
110 111 0.989602 ACGGGAGGGACTTTTTAGGG 59.010 55.000 0.00 0.00 41.55 3.53
111 112 1.282382 CGGGAGGGACTTTTTAGGGA 58.718 55.000 0.00 0.00 41.55 4.20
112 113 1.065636 CGGGAGGGACTTTTTAGGGAC 60.066 57.143 0.00 0.00 41.55 4.46
113 114 2.276391 GGGAGGGACTTTTTAGGGACT 58.724 52.381 0.00 0.00 41.55 3.85
114 115 3.457836 GGGAGGGACTTTTTAGGGACTA 58.542 50.000 0.00 0.00 41.55 2.59
115 116 3.848377 GGGAGGGACTTTTTAGGGACTAA 59.152 47.826 0.00 0.00 45.97 2.24
131 132 6.937392 AGGGACTAAACTAGACATTTGAGAC 58.063 40.000 0.00 0.00 36.02 3.36
132 133 6.726764 AGGGACTAAACTAGACATTTGAGACT 59.273 38.462 0.00 0.00 36.02 3.24
133 134 7.894364 AGGGACTAAACTAGACATTTGAGACTA 59.106 37.037 0.00 0.00 36.02 2.59
134 135 8.529476 GGGACTAAACTAGACATTTGAGACTAA 58.471 37.037 0.00 0.00 0.00 2.24
135 136 9.924650 GGACTAAACTAGACATTTGAGACTAAA 57.075 33.333 0.00 0.00 0.00 1.85
153 154 9.528018 GAGACTAAATGAAGAATACTCTCAAGG 57.472 37.037 0.00 0.00 0.00 3.61
154 155 9.261035 AGACTAAATGAAGAATACTCTCAAGGA 57.739 33.333 0.00 0.00 0.00 3.36
155 156 9.528018 GACTAAATGAAGAATACTCTCAAGGAG 57.472 37.037 0.00 0.00 46.87 3.69
156 157 9.261035 ACTAAATGAAGAATACTCTCAAGGAGA 57.739 33.333 0.00 0.00 44.45 3.71
185 186 7.899178 TTTTTGGGACTTTTTGAGACTTTTC 57.101 32.000 0.00 0.00 0.00 2.29
186 187 5.592104 TTGGGACTTTTTGAGACTTTTCC 57.408 39.130 0.00 0.00 0.00 3.13
187 188 4.605183 TGGGACTTTTTGAGACTTTTCCA 58.395 39.130 0.00 0.00 0.00 3.53
188 189 5.020132 TGGGACTTTTTGAGACTTTTCCAA 58.980 37.500 0.00 0.00 0.00 3.53
189 190 5.105513 TGGGACTTTTTGAGACTTTTCCAAC 60.106 40.000 0.00 0.00 0.00 3.77
190 191 5.105513 GGGACTTTTTGAGACTTTTCCAACA 60.106 40.000 0.00 0.00 0.00 3.33
191 192 6.394809 GGACTTTTTGAGACTTTTCCAACAA 58.605 36.000 0.00 0.00 0.00 2.83
192 193 7.041721 GGACTTTTTGAGACTTTTCCAACAAT 58.958 34.615 0.00 0.00 0.00 2.71
193 194 7.010460 GGACTTTTTGAGACTTTTCCAACAATG 59.990 37.037 0.00 0.00 0.00 2.82
194 195 6.313658 ACTTTTTGAGACTTTTCCAACAATGC 59.686 34.615 0.00 0.00 0.00 3.56
195 196 4.320608 TTGAGACTTTTCCAACAATGCC 57.679 40.909 0.00 0.00 0.00 4.40
196 197 2.627699 TGAGACTTTTCCAACAATGCCC 59.372 45.455 0.00 0.00 0.00 5.36
197 198 1.970640 AGACTTTTCCAACAATGCCCC 59.029 47.619 0.00 0.00 0.00 5.80
198 199 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
199 200 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
200 201 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
201 202 0.189574 TTTCCAACAATGCCCCTCCA 59.810 50.000 0.00 0.00 0.00 3.86
202 203 0.413037 TTCCAACAATGCCCCTCCAT 59.587 50.000 0.00 0.00 0.00 3.41
203 204 0.324552 TCCAACAATGCCCCTCCATG 60.325 55.000 0.00 0.00 0.00 3.66
204 205 1.518774 CAACAATGCCCCTCCATGC 59.481 57.895 0.00 0.00 0.00 4.06
205 206 1.078891 AACAATGCCCCTCCATGCA 59.921 52.632 0.00 0.00 42.52 3.96
207 208 0.757935 ACAATGCCCCTCCATGCATC 60.758 55.000 0.00 0.00 46.97 3.91
208 209 1.152398 AATGCCCCTCCATGCATCC 60.152 57.895 0.00 0.00 46.97 3.51
209 210 1.951923 AATGCCCCTCCATGCATCCA 61.952 55.000 0.00 0.00 46.97 3.41
210 211 1.736491 ATGCCCCTCCATGCATCCAT 61.736 55.000 0.00 0.00 44.58 3.41
211 212 1.152398 GCCCCTCCATGCATCCATT 60.152 57.895 0.00 0.00 0.00 3.16
212 213 1.469335 GCCCCTCCATGCATCCATTG 61.469 60.000 0.00 0.00 0.00 2.82
213 214 0.830444 CCCCTCCATGCATCCATTGG 60.830 60.000 0.00 0.00 0.00 3.16
214 215 1.469335 CCCTCCATGCATCCATTGGC 61.469 60.000 0.00 0.00 0.00 4.52
215 216 1.469335 CCTCCATGCATCCATTGGCC 61.469 60.000 0.00 0.00 0.00 5.36
216 217 1.458020 TCCATGCATCCATTGGCCC 60.458 57.895 0.00 0.00 0.00 5.80
217 218 2.732016 CATGCATCCATTGGCCCG 59.268 61.111 0.00 0.00 0.00 6.13
218 219 3.228759 ATGCATCCATTGGCCCGC 61.229 61.111 0.00 0.90 0.00 6.13
238 239 3.935371 ACCCCATGGTGTTGTTTGA 57.065 47.368 11.73 0.00 45.58 2.69
239 240 2.397044 ACCCCATGGTGTTGTTTGAT 57.603 45.000 11.73 0.00 45.58 2.57
240 241 2.688477 ACCCCATGGTGTTGTTTGATT 58.312 42.857 11.73 0.00 45.58 2.57
241 242 2.368221 ACCCCATGGTGTTGTTTGATTG 59.632 45.455 11.73 0.00 45.58 2.67
242 243 2.368221 CCCCATGGTGTTGTTTGATTGT 59.632 45.455 11.73 0.00 0.00 2.71
243 244 3.181456 CCCCATGGTGTTGTTTGATTGTT 60.181 43.478 11.73 0.00 0.00 2.83
244 245 4.039730 CCCCATGGTGTTGTTTGATTGTTA 59.960 41.667 11.73 0.00 0.00 2.41
245 246 5.279910 CCCCATGGTGTTGTTTGATTGTTAT 60.280 40.000 11.73 0.00 0.00 1.89
246 247 6.229733 CCCATGGTGTTGTTTGATTGTTATT 58.770 36.000 11.73 0.00 0.00 1.40
247 248 6.709846 CCCATGGTGTTGTTTGATTGTTATTT 59.290 34.615 11.73 0.00 0.00 1.40
248 249 7.228308 CCCATGGTGTTGTTTGATTGTTATTTT 59.772 33.333 11.73 0.00 0.00 1.82
249 250 8.619546 CCATGGTGTTGTTTGATTGTTATTTTT 58.380 29.630 2.57 0.00 0.00 1.94
272 273 6.773583 TTTATATACTAGGGGCAACATGGT 57.226 37.500 0.00 0.00 39.74 3.55
273 274 4.910458 ATATACTAGGGGCAACATGGTC 57.090 45.455 0.00 0.00 39.74 4.02
274 275 1.959710 TACTAGGGGCAACATGGTCA 58.040 50.000 0.00 0.00 39.74 4.02
275 276 1.298953 ACTAGGGGCAACATGGTCAT 58.701 50.000 0.00 0.00 39.74 3.06
276 277 1.640670 ACTAGGGGCAACATGGTCATT 59.359 47.619 0.00 0.00 39.74 2.57
277 278 2.042979 ACTAGGGGCAACATGGTCATTT 59.957 45.455 0.00 0.00 39.74 2.32
278 279 2.917713 AGGGGCAACATGGTCATTTA 57.082 45.000 0.00 0.00 39.74 1.40
279 280 3.182887 AGGGGCAACATGGTCATTTAA 57.817 42.857 0.00 0.00 39.74 1.52
280 281 3.723325 AGGGGCAACATGGTCATTTAAT 58.277 40.909 0.00 0.00 39.74 1.40
281 282 4.877773 AGGGGCAACATGGTCATTTAATA 58.122 39.130 0.00 0.00 39.74 0.98
282 283 5.276440 AGGGGCAACATGGTCATTTAATAA 58.724 37.500 0.00 0.00 39.74 1.40
283 284 5.128663 AGGGGCAACATGGTCATTTAATAAC 59.871 40.000 0.00 0.00 39.74 1.89
284 285 5.356426 GGGCAACATGGTCATTTAATAACC 58.644 41.667 0.00 0.00 39.74 2.85
285 286 5.128663 GGGCAACATGGTCATTTAATAACCT 59.871 40.000 0.00 0.00 39.74 3.50
286 287 6.273071 GGCAACATGGTCATTTAATAACCTC 58.727 40.000 0.00 0.00 34.05 3.85
287 288 6.096846 GGCAACATGGTCATTTAATAACCTCT 59.903 38.462 0.00 0.00 34.05 3.69
288 289 7.284489 GGCAACATGGTCATTTAATAACCTCTA 59.716 37.037 0.00 0.00 34.05 2.43
289 290 8.345565 GCAACATGGTCATTTAATAACCTCTAG 58.654 37.037 0.00 0.00 34.05 2.43
290 291 8.840321 CAACATGGTCATTTAATAACCTCTAGG 58.160 37.037 0.00 0.00 42.17 3.02
291 292 8.331931 ACATGGTCATTTAATAACCTCTAGGA 57.668 34.615 2.23 0.00 38.94 2.94
292 293 8.778059 ACATGGTCATTTAATAACCTCTAGGAA 58.222 33.333 2.23 0.00 38.94 3.36
293 294 9.277783 CATGGTCATTTAATAACCTCTAGGAAG 57.722 37.037 2.23 0.00 38.94 3.46
294 295 7.802117 TGGTCATTTAATAACCTCTAGGAAGG 58.198 38.462 2.23 0.00 42.55 3.46
295 296 7.147373 TGGTCATTTAATAACCTCTAGGAAGGG 60.147 40.741 2.23 0.00 41.04 3.95
296 297 7.072076 GGTCATTTAATAACCTCTAGGAAGGGA 59.928 40.741 2.23 0.00 41.04 4.20
297 298 7.932491 GTCATTTAATAACCTCTAGGAAGGGAC 59.068 40.741 2.23 0.00 41.04 4.46
298 299 7.849904 TCATTTAATAACCTCTAGGAAGGGACT 59.150 37.037 2.23 0.00 41.04 3.85
299 300 9.155785 CATTTAATAACCTCTAGGAAGGGACTA 57.844 37.037 2.23 0.00 41.04 2.59
300 301 8.779096 TTTAATAACCTCTAGGAAGGGACTAG 57.221 38.462 2.23 0.00 41.04 2.57
301 302 6.609379 AATAACCTCTAGGAAGGGACTAGA 57.391 41.667 2.23 0.00 43.33 2.43
307 308 5.799978 TCTAGGAAGGGACTAGAGACTTT 57.200 43.478 0.00 0.00 41.34 2.66
308 309 6.155247 TCTAGGAAGGGACTAGAGACTTTT 57.845 41.667 0.00 0.00 41.34 2.27
309 310 6.563163 TCTAGGAAGGGACTAGAGACTTTTT 58.437 40.000 0.00 0.00 41.34 1.94
310 311 7.706674 TCTAGGAAGGGACTAGAGACTTTTTA 58.293 38.462 0.00 0.00 41.34 1.52
311 312 6.860790 AGGAAGGGACTAGAGACTTTTTAG 57.139 41.667 0.00 0.00 38.49 1.85
312 313 6.324544 AGGAAGGGACTAGAGACTTTTTAGT 58.675 40.000 0.00 0.00 38.49 2.24
313 314 6.438108 AGGAAGGGACTAGAGACTTTTTAGTC 59.562 42.308 0.00 11.42 38.49 2.59
314 315 6.438108 GGAAGGGACTAGAGACTTTTTAGTCT 59.562 42.308 7.50 7.50 45.89 3.24
327 328 9.232473 AGACTTTTTAGTCTCTGAAAACAAACT 57.768 29.630 2.08 0.00 45.09 2.66
328 329 9.841880 GACTTTTTAGTCTCTGAAAACAAACTT 57.158 29.630 0.00 0.00 36.01 2.66
335 336 7.772166 AGTCTCTGAAAACAAACTTTTTAGGG 58.228 34.615 0.00 0.00 29.74 3.53
336 337 7.614192 AGTCTCTGAAAACAAACTTTTTAGGGA 59.386 33.333 0.00 0.00 33.76 4.20
337 338 7.701078 GTCTCTGAAAACAAACTTTTTAGGGAC 59.299 37.037 12.09 12.09 43.40 4.46
338 339 7.614192 TCTCTGAAAACAAACTTTTTAGGGACT 59.386 33.333 0.00 0.00 46.37 3.85
339 340 8.810990 TCTGAAAACAAACTTTTTAGGGACTA 57.189 30.769 0.00 0.00 41.75 2.59
340 341 8.899771 TCTGAAAACAAACTTTTTAGGGACTAG 58.100 33.333 0.00 0.00 44.25 2.57
341 342 8.002984 TGAAAACAAACTTTTTAGGGACTAGG 57.997 34.615 0.00 0.00 44.25 3.02
342 343 6.971726 AAACAAACTTTTTAGGGACTAGGG 57.028 37.500 0.00 0.00 44.25 3.53
343 344 5.917545 ACAAACTTTTTAGGGACTAGGGA 57.082 39.130 0.00 0.00 44.25 4.20
344 345 5.628130 ACAAACTTTTTAGGGACTAGGGAC 58.372 41.667 0.00 0.00 44.25 4.46
345 346 5.371769 ACAAACTTTTTAGGGACTAGGGACT 59.628 40.000 0.00 0.00 44.25 3.85
346 347 6.126273 ACAAACTTTTTAGGGACTAGGGACTT 60.126 38.462 0.00 0.00 44.25 3.01
347 348 6.526056 AACTTTTTAGGGACTAGGGACTTT 57.474 37.500 0.00 0.00 44.25 2.66
348 349 5.877491 ACTTTTTAGGGACTAGGGACTTTG 58.123 41.667 0.00 0.00 44.25 2.77
349 350 4.921644 TTTTAGGGACTAGGGACTTTGG 57.078 45.455 0.00 0.00 44.25 3.28
350 351 2.563039 TAGGGACTAGGGACTTTGGG 57.437 55.000 0.00 0.00 41.75 4.12
351 352 0.797579 AGGGACTAGGGACTTTGGGA 59.202 55.000 0.00 0.00 41.75 4.37
352 353 0.910338 GGGACTAGGGACTTTGGGAC 59.090 60.000 0.00 0.00 41.75 4.46
353 354 1.555058 GGGACTAGGGACTTTGGGACT 60.555 57.143 0.00 0.00 41.75 3.85
354 355 2.292719 GGGACTAGGGACTTTGGGACTA 60.293 54.545 0.00 0.00 41.75 2.59
355 356 3.032459 GGACTAGGGACTTTGGGACTAG 58.968 54.545 0.00 0.00 41.75 2.57
356 357 3.309701 GGACTAGGGACTTTGGGACTAGA 60.310 52.174 0.00 0.00 41.75 2.43
357 358 4.351127 GACTAGGGACTTTGGGACTAGAA 58.649 47.826 0.00 0.00 41.75 2.10
358 359 4.759953 ACTAGGGACTTTGGGACTAGAAA 58.240 43.478 0.00 0.00 41.75 2.52
359 360 5.160386 ACTAGGGACTTTGGGACTAGAAAA 58.840 41.667 0.00 0.00 41.75 2.29
360 361 5.609708 ACTAGGGACTTTGGGACTAGAAAAA 59.390 40.000 0.00 0.00 41.75 1.94
384 385 8.934023 AAATCCTAAGACTTATGAACCAAACA 57.066 30.769 4.56 0.00 0.00 2.83
385 386 8.567285 AATCCTAAGACTTATGAACCAAACAG 57.433 34.615 4.56 0.00 0.00 3.16
386 387 6.472887 TCCTAAGACTTATGAACCAAACAGG 58.527 40.000 0.00 0.00 45.67 4.00
387 388 5.648092 CCTAAGACTTATGAACCAAACAGGG 59.352 44.000 0.00 0.00 43.89 4.45
388 389 4.724279 AGACTTATGAACCAAACAGGGT 57.276 40.909 0.00 0.00 43.33 4.34
396 397 2.833631 ACCAAACAGGGTCTTAGTCG 57.166 50.000 0.00 0.00 43.89 4.18
397 398 2.322658 ACCAAACAGGGTCTTAGTCGA 58.677 47.619 0.00 0.00 43.89 4.20
398 399 2.904434 ACCAAACAGGGTCTTAGTCGAT 59.096 45.455 0.00 0.00 43.89 3.59
399 400 3.262420 CCAAACAGGGTCTTAGTCGATG 58.738 50.000 0.00 0.00 0.00 3.84
400 401 2.673368 CAAACAGGGTCTTAGTCGATGC 59.327 50.000 0.00 0.00 0.00 3.91
401 402 1.853963 ACAGGGTCTTAGTCGATGCT 58.146 50.000 0.00 0.00 0.00 3.79
402 403 3.014304 ACAGGGTCTTAGTCGATGCTA 57.986 47.619 0.00 0.00 0.00 3.49
403 404 3.567397 ACAGGGTCTTAGTCGATGCTAT 58.433 45.455 0.00 0.00 0.00 2.97
404 405 4.726583 ACAGGGTCTTAGTCGATGCTATA 58.273 43.478 0.00 0.00 0.00 1.31
405 406 5.326069 ACAGGGTCTTAGTCGATGCTATAT 58.674 41.667 0.00 0.00 0.00 0.86
406 407 5.184096 ACAGGGTCTTAGTCGATGCTATATG 59.816 44.000 0.00 0.00 0.00 1.78
407 408 4.158764 AGGGTCTTAGTCGATGCTATATGC 59.841 45.833 0.00 0.00 43.25 3.14
423 424 7.912056 GCTATATGCATGAAATCTTACCTGA 57.088 36.000 10.16 0.00 42.31 3.86
424 425 8.327941 GCTATATGCATGAAATCTTACCTGAA 57.672 34.615 10.16 0.00 42.31 3.02
425 426 8.786898 GCTATATGCATGAAATCTTACCTGAAA 58.213 33.333 10.16 0.00 42.31 2.69
429 430 6.866480 TGCATGAAATCTTACCTGAAAATCC 58.134 36.000 0.00 0.00 0.00 3.01
430 431 6.436847 TGCATGAAATCTTACCTGAAAATCCA 59.563 34.615 0.00 0.00 0.00 3.41
431 432 7.124599 TGCATGAAATCTTACCTGAAAATCCAT 59.875 33.333 0.00 0.00 0.00 3.41
432 433 7.437267 GCATGAAATCTTACCTGAAAATCCATG 59.563 37.037 0.00 0.00 0.00 3.66
433 434 6.866480 TGAAATCTTACCTGAAAATCCATGC 58.134 36.000 0.00 0.00 0.00 4.06
434 435 6.436847 TGAAATCTTACCTGAAAATCCATGCA 59.563 34.615 0.00 0.00 0.00 3.96
435 436 6.855763 AATCTTACCTGAAAATCCATGCAA 57.144 33.333 0.00 0.00 0.00 4.08
436 437 6.855763 ATCTTACCTGAAAATCCATGCAAA 57.144 33.333 0.00 0.00 0.00 3.68
437 438 6.271488 TCTTACCTGAAAATCCATGCAAAG 57.729 37.500 0.00 0.00 0.00 2.77
438 439 5.774690 TCTTACCTGAAAATCCATGCAAAGT 59.225 36.000 0.00 0.00 0.00 2.66
439 440 4.961438 ACCTGAAAATCCATGCAAAGTT 57.039 36.364 0.00 0.00 0.00 2.66
440 441 5.294734 ACCTGAAAATCCATGCAAAGTTT 57.705 34.783 0.00 0.00 0.00 2.66
441 442 5.683681 ACCTGAAAATCCATGCAAAGTTTT 58.316 33.333 0.00 0.00 0.00 2.43
442 443 5.759763 ACCTGAAAATCCATGCAAAGTTTTC 59.240 36.000 16.50 16.50 38.56 2.29
443 444 5.993441 CCTGAAAATCCATGCAAAGTTTTCT 59.007 36.000 20.56 5.27 38.76 2.52
444 445 6.484308 CCTGAAAATCCATGCAAAGTTTTCTT 59.516 34.615 20.56 0.39 42.58 2.52
446 447 8.278729 TGAAAATCCATGCAAAGTTTTCTTTT 57.721 26.923 20.56 8.60 46.55 2.27
447 448 9.388506 TGAAAATCCATGCAAAGTTTTCTTTTA 57.611 25.926 20.56 7.19 46.55 1.52
489 490 6.761099 ATGTTGTATCACTCGACTAAGACT 57.239 37.500 0.00 0.00 0.00 3.24
490 491 6.179504 TGTTGTATCACTCGACTAAGACTC 57.820 41.667 0.00 0.00 0.00 3.36
491 492 5.163884 TGTTGTATCACTCGACTAAGACTCG 60.164 44.000 0.00 0.00 0.00 4.18
492 493 4.502016 TGTATCACTCGACTAAGACTCGT 58.498 43.478 0.00 0.00 32.77 4.18
493 494 4.934001 TGTATCACTCGACTAAGACTCGTT 59.066 41.667 0.00 0.00 32.77 3.85
494 495 6.101997 TGTATCACTCGACTAAGACTCGTTA 58.898 40.000 0.00 0.00 32.77 3.18
495 496 6.591448 TGTATCACTCGACTAAGACTCGTTAA 59.409 38.462 0.00 0.00 32.77 2.01
496 497 5.527511 TCACTCGACTAAGACTCGTTAAG 57.472 43.478 0.00 0.00 32.77 1.85
497 498 4.993584 TCACTCGACTAAGACTCGTTAAGT 59.006 41.667 0.00 0.00 42.42 2.24
498 499 5.080731 CACTCGACTAAGACTCGTTAAGTG 58.919 45.833 0.00 0.00 38.74 3.16
499 500 4.754114 ACTCGACTAAGACTCGTTAAGTGT 59.246 41.667 0.00 0.00 38.74 3.55
500 501 5.107143 ACTCGACTAAGACTCGTTAAGTGTC 60.107 44.000 0.00 0.00 38.74 3.67
501 502 4.751600 TCGACTAAGACTCGTTAAGTGTCA 59.248 41.667 3.59 0.00 43.66 3.58
502 503 5.080731 CGACTAAGACTCGTTAAGTGTCAG 58.919 45.833 3.59 0.00 43.66 3.51
503 504 5.333952 CGACTAAGACTCGTTAAGTGTCAGT 60.334 44.000 3.59 0.00 43.66 3.41
504 505 6.388435 ACTAAGACTCGTTAAGTGTCAGTT 57.612 37.500 0.00 0.00 43.66 3.16
505 506 7.502120 ACTAAGACTCGTTAAGTGTCAGTTA 57.498 36.000 3.59 0.00 43.66 2.24
506 507 7.934457 ACTAAGACTCGTTAAGTGTCAGTTAA 58.066 34.615 8.51 8.51 43.66 2.01
507 508 8.408601 ACTAAGACTCGTTAAGTGTCAGTTAAA 58.591 33.333 13.31 0.55 43.66 1.52
508 509 9.241317 CTAAGACTCGTTAAGTGTCAGTTAAAA 57.759 33.333 13.31 5.67 43.66 1.52
509 510 7.695869 AGACTCGTTAAGTGTCAGTTAAAAG 57.304 36.000 13.31 14.75 43.66 2.27
510 511 7.486647 AGACTCGTTAAGTGTCAGTTAAAAGA 58.513 34.615 20.45 17.33 43.66 2.52
511 512 8.142551 AGACTCGTTAAGTGTCAGTTAAAAGAT 58.857 33.333 20.45 11.63 43.66 2.40
512 513 8.073355 ACTCGTTAAGTGTCAGTTAAAAGATG 57.927 34.615 20.45 15.05 36.65 2.90
513 514 7.709613 ACTCGTTAAGTGTCAGTTAAAAGATGT 59.290 33.333 20.45 15.42 36.65 3.06
514 515 9.188588 CTCGTTAAGTGTCAGTTAAAAGATGTA 57.811 33.333 13.31 0.00 0.00 2.29
515 516 9.188588 TCGTTAAGTGTCAGTTAAAAGATGTAG 57.811 33.333 13.31 1.29 0.00 2.74
516 517 7.950496 CGTTAAGTGTCAGTTAAAAGATGTAGC 59.050 37.037 13.31 0.00 0.00 3.58
517 518 6.803154 AAGTGTCAGTTAAAAGATGTAGCC 57.197 37.500 0.00 0.00 0.00 3.93
518 519 5.865085 AGTGTCAGTTAAAAGATGTAGCCA 58.135 37.500 0.00 0.00 0.00 4.75
519 520 5.701290 AGTGTCAGTTAAAAGATGTAGCCAC 59.299 40.000 0.00 0.00 0.00 5.01
520 521 5.468746 GTGTCAGTTAAAAGATGTAGCCACA 59.531 40.000 0.00 0.00 39.52 4.17
521 522 5.468746 TGTCAGTTAAAAGATGTAGCCACAC 59.531 40.000 0.00 0.00 37.54 3.82
522 523 5.001232 TCAGTTAAAAGATGTAGCCACACC 58.999 41.667 0.00 0.00 37.54 4.16
523 524 4.156008 CAGTTAAAAGATGTAGCCACACCC 59.844 45.833 0.00 0.00 37.54 4.61
524 525 2.215942 AAAAGATGTAGCCACACCCC 57.784 50.000 0.00 0.00 37.54 4.95
525 526 1.372501 AAAGATGTAGCCACACCCCT 58.627 50.000 0.00 0.00 37.54 4.79
526 527 2.263895 AAGATGTAGCCACACCCCTA 57.736 50.000 0.00 0.00 37.54 3.53
527 528 2.263895 AGATGTAGCCACACCCCTAA 57.736 50.000 0.00 0.00 37.54 2.69
528 529 2.557869 AGATGTAGCCACACCCCTAAA 58.442 47.619 0.00 0.00 37.54 1.85
529 530 2.916934 AGATGTAGCCACACCCCTAAAA 59.083 45.455 0.00 0.00 37.54 1.52
530 531 3.332485 AGATGTAGCCACACCCCTAAAAA 59.668 43.478 0.00 0.00 37.54 1.94
556 557 2.030363 TGGATGCAAAACGATGAACACC 60.030 45.455 0.00 0.00 0.00 4.16
565 566 6.456181 GCAAAACGATGAACACCAAAAATCAA 60.456 34.615 0.00 0.00 0.00 2.57
568 569 6.083098 ACGATGAACACCAAAAATCAATCA 57.917 33.333 0.00 0.00 0.00 2.57
619 620 3.121030 CTGGCCGCTGAAAGACCG 61.121 66.667 0.00 0.00 34.07 4.79
624 625 1.901650 GCCGCTGAAAGACCGAAGTG 61.902 60.000 0.00 0.00 34.07 3.16
633 634 2.080286 AGACCGAAGTGAACCATTCG 57.920 50.000 0.57 0.57 45.96 3.34
636 637 1.202604 ACCGAAGTGAACCATTCGTGT 60.203 47.619 6.58 2.20 45.17 4.49
640 641 2.910688 AGTGAACCATTCGTGTCACT 57.089 45.000 0.65 0.00 34.12 3.41
641 642 2.483876 AGTGAACCATTCGTGTCACTG 58.516 47.619 4.45 0.00 37.10 3.66
642 643 1.531149 GTGAACCATTCGTGTCACTGG 59.469 52.381 7.94 7.94 34.84 4.00
643 644 0.517316 GAACCATTCGTGTCACTGGC 59.483 55.000 9.16 0.00 31.72 4.85
644 645 0.179032 AACCATTCGTGTCACTGGCA 60.179 50.000 9.16 0.00 31.72 4.92
645 646 0.884704 ACCATTCGTGTCACTGGCAC 60.885 55.000 3.49 3.49 31.72 5.01
646 647 0.603707 CCATTCGTGTCACTGGCACT 60.604 55.000 11.90 0.00 34.91 4.40
647 648 0.514255 CATTCGTGTCACTGGCACTG 59.486 55.000 11.90 5.87 34.91 3.66
670 671 1.142870 CCAGAAACCCACAACTCCAGA 59.857 52.381 0.00 0.00 0.00 3.86
671 672 2.422803 CCAGAAACCCACAACTCCAGAA 60.423 50.000 0.00 0.00 0.00 3.02
672 673 2.880890 CAGAAACCCACAACTCCAGAAG 59.119 50.000 0.00 0.00 0.00 2.85
673 674 2.158608 AGAAACCCACAACTCCAGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
674 675 1.518367 AACCCACAACTCCAGAAGGA 58.482 50.000 0.00 0.00 43.21 3.36
675 676 0.765510 ACCCACAACTCCAGAAGGAC 59.234 55.000 0.00 0.00 39.61 3.85
676 677 1.059913 CCCACAACTCCAGAAGGACT 58.940 55.000 0.00 0.00 39.61 3.85
677 678 1.271054 CCCACAACTCCAGAAGGACTG 60.271 57.143 0.00 0.00 45.36 3.51
726 732 1.067250 GCCACGGCAAGCTTCAAAA 59.933 52.632 2.36 0.00 41.49 2.44
880 888 2.409870 CCAAATCAGGCGCCCAGTC 61.410 63.158 26.15 0.00 0.00 3.51
928 940 4.856607 CCGAGCGACGAAGCCCTC 62.857 72.222 0.00 0.00 45.77 4.30
929 941 4.856607 CGAGCGACGAAGCCCTCC 62.857 72.222 0.00 0.00 45.77 4.30
930 942 4.516195 GAGCGACGAAGCCCTCCC 62.516 72.222 0.00 0.00 38.01 4.30
1059 1073 4.058731 TCTTATCTCCTCTTCCTCCTCCT 58.941 47.826 0.00 0.00 0.00 3.69
1060 1074 4.105697 TCTTATCTCCTCTTCCTCCTCCTC 59.894 50.000 0.00 0.00 0.00 3.71
1061 1075 0.930726 TCTCCTCTTCCTCCTCCTCC 59.069 60.000 0.00 0.00 0.00 4.30
1062 1076 0.105709 CTCCTCTTCCTCCTCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
1063 1077 0.556380 TCCTCTTCCTCCTCCTCCCT 60.556 60.000 0.00 0.00 0.00 4.20
1064 1078 0.105709 CCTCTTCCTCCTCCTCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
1334 1561 0.463204 TCGACGAGGACTACGAGGAT 59.537 55.000 0.00 0.00 34.70 3.24
1337 1564 0.545171 ACGAGGACTACGAGGATGGA 59.455 55.000 0.00 0.00 34.70 3.41
1346 1573 2.657237 GAGGATGGATACGGCGGG 59.343 66.667 13.24 0.00 42.51 6.13
1499 1732 2.050269 CTGGGTGACGTTGGTCTCT 58.950 57.895 0.00 0.00 43.79 3.10
1513 1746 1.281899 GTCTCTAATGCGTGCAGACC 58.718 55.000 0.00 0.00 0.00 3.85
1721 1954 8.526681 CGTTTCATTTCTTCTTTCTCTTGTTTG 58.473 33.333 0.00 0.00 0.00 2.93
1722 1955 7.992180 TTCATTTCTTCTTTCTCTTGTTTGC 57.008 32.000 0.00 0.00 0.00 3.68
1729 1962 5.543507 TCTTTCTCTTGTTTGCTCTCTCT 57.456 39.130 0.00 0.00 0.00 3.10
1730 1963 5.537188 TCTTTCTCTTGTTTGCTCTCTCTC 58.463 41.667 0.00 0.00 0.00 3.20
1731 1964 5.304101 TCTTTCTCTTGTTTGCTCTCTCTCT 59.696 40.000 0.00 0.00 0.00 3.10
1732 1965 4.782019 TCTCTTGTTTGCTCTCTCTCTC 57.218 45.455 0.00 0.00 0.00 3.20
1733 1966 4.406456 TCTCTTGTTTGCTCTCTCTCTCT 58.594 43.478 0.00 0.00 0.00 3.10
1734 1967 4.458989 TCTCTTGTTTGCTCTCTCTCTCTC 59.541 45.833 0.00 0.00 0.00 3.20
1735 1968 4.406456 TCTTGTTTGCTCTCTCTCTCTCT 58.594 43.478 0.00 0.00 0.00 3.10
1736 1969 4.458989 TCTTGTTTGCTCTCTCTCTCTCTC 59.541 45.833 0.00 0.00 0.00 3.20
1737 1970 4.032960 TGTTTGCTCTCTCTCTCTCTCT 57.967 45.455 0.00 0.00 0.00 3.10
1738 1971 4.009675 TGTTTGCTCTCTCTCTCTCTCTC 58.990 47.826 0.00 0.00 0.00 3.20
1739 1972 4.263462 TGTTTGCTCTCTCTCTCTCTCTCT 60.263 45.833 0.00 0.00 0.00 3.10
1740 1973 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
1741 1974 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
1742 1975 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
1743 1976 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
1744 1977 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
1745 1978 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1746 1979 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1747 1980 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1748 1981 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1749 1982 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1750 1983 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1751 1984 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1752 1985 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1753 1986 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1754 1987 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1905 2138 1.004862 TGGACATGGTTATCGCCCAAA 59.995 47.619 0.00 0.00 35.14 3.28
2059 2297 3.684103 TTGTTGAACAATGTGGTCGAC 57.316 42.857 6.66 7.13 46.30 4.20
2157 2398 5.340891 TCCACCTAGGCTTGTCTATCTAT 57.659 43.478 9.30 0.00 37.29 1.98
2158 2399 5.080337 TCCACCTAGGCTTGTCTATCTATG 58.920 45.833 9.30 0.00 37.29 2.23
2170 2411 6.319141 TGTCTATCTATGGTTCATGTCTCG 57.681 41.667 0.00 0.00 0.00 4.04
2292 2534 7.064229 TCAAAATTGTGTCTTAGGGGTAACTT 58.936 34.615 0.00 0.00 0.00 2.66
2293 2535 8.219178 TCAAAATTGTGTCTTAGGGGTAACTTA 58.781 33.333 0.00 0.00 0.00 2.24
2294 2536 7.991084 AAATTGTGTCTTAGGGGTAACTTAC 57.009 36.000 0.00 0.00 0.00 2.34
2295 2537 6.947376 ATTGTGTCTTAGGGGTAACTTACT 57.053 37.500 0.00 0.00 0.00 2.24
2316 2558 2.105124 GCAGAAGCTCCCAATCAGC 58.895 57.895 0.00 0.00 37.91 4.26
2327 2569 2.689471 TCCCAATCAGCACACATTATGC 59.311 45.455 0.00 0.00 43.74 3.14
2498 2743 5.260424 TGGTTATGCTCAGAAAATTGGCTA 58.740 37.500 0.00 0.00 0.00 3.93
2702 2947 3.308323 GTGCGGATCATCTTTGAAGTCTC 59.692 47.826 0.00 0.00 34.96 3.36
2711 2956 9.429359 GATCATCTTTGAAGTCTCTCTTGTTTA 57.571 33.333 0.00 0.00 36.40 2.01
2755 3000 4.284490 TGCAAGGTTGTTGGGCATATTTAA 59.716 37.500 0.00 0.00 0.00 1.52
2756 3001 5.046014 TGCAAGGTTGTTGGGCATATTTAAT 60.046 36.000 0.00 0.00 0.00 1.40
2786 3033 0.460722 TCGGACACTTCACGGAAACA 59.539 50.000 0.00 0.00 0.00 2.83
2909 3157 6.267699 CCCTTTACTCAAACATTCCCTTTCTT 59.732 38.462 0.00 0.00 0.00 2.52
3098 3348 1.940613 GACAGTGACAGTGGGTGAAAC 59.059 52.381 14.70 0.00 0.00 2.78
3251 3501 2.334977 TGTGCTAGGGAAAGTCAAGGA 58.665 47.619 0.00 0.00 0.00 3.36
3459 3719 4.891992 TTTAGCACCTAGTCTCAAAGCT 57.108 40.909 0.00 0.00 34.84 3.74
3747 4170 0.179073 GCTATGGTCTGCCGTGTGAT 60.179 55.000 0.00 0.00 37.67 3.06
3748 4171 1.743772 GCTATGGTCTGCCGTGTGATT 60.744 52.381 0.00 0.00 37.67 2.57
3863 4286 6.024049 CCTTTACTTTTGCTGATCGTGAATC 58.976 40.000 0.00 0.00 34.72 2.52
3879 4302 9.906660 GATCGTGAATCTAAGTCATTCTAGAAT 57.093 33.333 12.37 12.37 32.32 2.40
3882 4305 9.521503 CGTGAATCTAAGTCATTCTAGAATTCA 57.478 33.333 15.49 11.00 32.32 2.57
3890 4313 7.129457 AGTCATTCTAGAATTCATGCCAGTA 57.871 36.000 15.49 0.00 0.00 2.74
3893 4316 8.677300 GTCATTCTAGAATTCATGCCAGTAAAA 58.323 33.333 15.49 0.00 0.00 1.52
3894 4317 9.241919 TCATTCTAGAATTCATGCCAGTAAAAA 57.758 29.630 15.49 0.00 0.00 1.94
3923 4349 6.865834 TGGTTTGGCCTTCAATGTATAAAT 57.134 33.333 3.32 0.00 38.35 1.40
3931 4357 9.860650 TGGCCTTCAATGTATAAATACTAATGT 57.139 29.630 3.32 0.00 34.41 2.71
3998 4451 3.689161 TGATTGTGGCAGCAACATAGTAC 59.311 43.478 2.56 0.00 0.00 2.73
4051 4504 1.569493 CTTGAAGGTCGTGTTGGCG 59.431 57.895 0.00 0.00 0.00 5.69
4059 4512 1.007336 GTCGTGTTGGCGTCGAGAAT 61.007 55.000 0.00 0.00 34.33 2.40
4188 4641 6.861572 CGTTTTTAGAGTCTATGACAGTGTCA 59.138 38.462 27.35 27.35 46.90 3.58
4229 4683 4.768968 AGTTACGAAGGGAGTAGCAGTTAA 59.231 41.667 0.00 0.00 0.00 2.01
4256 4710 7.907389 AGTTTTATACTGTCAATGGAGAGTGA 58.093 34.615 10.16 0.00 46.18 3.41
4289 4743 8.473219 TGATTATGCTAATTGTGCAAATGGTTA 58.527 29.630 11.07 0.00 44.01 2.85
4437 4891 9.371136 CTGTTGTTGTAAGATATCTGCTCTTAA 57.629 33.333 5.86 0.00 37.06 1.85
4455 4910 7.222611 TGCTCTTAAAAACATCTCTTTTGTTGC 59.777 33.333 0.00 0.00 37.38 4.17
4507 4962 0.321122 CCATATCTTCCCAGCGCTCC 60.321 60.000 7.13 0.00 0.00 4.70
4600 5055 4.219288 GGACCTTCAATCAAGCTGAACATT 59.781 41.667 0.00 0.00 0.00 2.71
4677 5135 4.707030 TTAAGTCATCAGGCATTTGCTG 57.293 40.909 2.12 0.00 41.70 4.41
4884 5342 3.725740 GCGAATTATGCATGCACTTACAC 59.274 43.478 25.37 12.00 0.00 2.90
4993 5451 1.726791 CGTCATCGTTAAGTTGCTGCT 59.273 47.619 0.00 0.00 0.00 4.24
5017 5482 7.148086 GCTGTTCTTGGACCATACAAATGATTA 60.148 37.037 0.00 0.00 34.84 1.75
5696 6161 4.225942 TGGGAAGAGATGCAATGACTACTT 59.774 41.667 0.00 0.00 0.00 2.24
5752 6217 2.346766 TGTCAAATCTGTGGTGCAGT 57.653 45.000 0.00 0.00 45.23 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.707464 ACAAACACCCCTTAAAATTTCGTTTAG 59.293 33.333 0.00 0.00 0.00 1.85
5 6 7.554211 ACAAACACCCCTTAAAATTTCGTTTA 58.446 30.769 0.00 0.00 0.00 2.01
6 7 6.408035 ACAAACACCCCTTAAAATTTCGTTT 58.592 32.000 0.00 0.00 0.00 3.60
9 10 6.018588 GGAAACAAACACCCCTTAAAATTTCG 60.019 38.462 0.00 0.00 0.00 3.46
10 11 6.824196 TGGAAACAAACACCCCTTAAAATTTC 59.176 34.615 0.00 0.00 37.44 2.17
11 12 6.722328 TGGAAACAAACACCCCTTAAAATTT 58.278 32.000 0.00 0.00 37.44 1.82
12 13 6.314899 TGGAAACAAACACCCCTTAAAATT 57.685 33.333 0.00 0.00 37.44 1.82
13 14 5.163248 CCTGGAAACAAACACCCCTTAAAAT 60.163 40.000 0.00 0.00 42.06 1.82
14 15 4.162509 CCTGGAAACAAACACCCCTTAAAA 59.837 41.667 0.00 0.00 42.06 1.52
15 16 3.707102 CCTGGAAACAAACACCCCTTAAA 59.293 43.478 0.00 0.00 42.06 1.52
16 17 3.301274 CCTGGAAACAAACACCCCTTAA 58.699 45.455 0.00 0.00 42.06 1.85
17 18 2.425102 CCCTGGAAACAAACACCCCTTA 60.425 50.000 0.00 0.00 42.06 2.69
18 19 1.691163 CCCTGGAAACAAACACCCCTT 60.691 52.381 0.00 0.00 42.06 3.95
19 20 0.105709 CCCTGGAAACAAACACCCCT 60.106 55.000 0.00 0.00 42.06 4.79
20 21 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
21 22 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
22 23 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
23 24 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
42 43 8.217131 GACTTTTTCTAGTCCCTACACAAAAA 57.783 34.615 0.00 0.00 38.88 1.94
43 44 7.797038 GACTTTTTCTAGTCCCTACACAAAA 57.203 36.000 0.00 0.00 38.88 2.44
81 82 2.175284 AGTCCCTCCCGTTTGGTAAAAA 59.825 45.455 0.00 0.00 34.77 1.94
82 83 1.776063 AGTCCCTCCCGTTTGGTAAAA 59.224 47.619 0.00 0.00 34.77 1.52
83 84 1.437397 AGTCCCTCCCGTTTGGTAAA 58.563 50.000 0.00 0.00 34.77 2.01
84 85 1.437397 AAGTCCCTCCCGTTTGGTAA 58.563 50.000 0.00 0.00 34.77 2.85
85 86 1.437397 AAAGTCCCTCCCGTTTGGTA 58.563 50.000 0.00 0.00 34.77 3.25
86 87 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
87 88 1.699730 AAAAAGTCCCTCCCGTTTGG 58.300 50.000 0.00 0.00 0.00 3.28
88 89 2.817844 CCTAAAAAGTCCCTCCCGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
89 90 2.224942 CCCTAAAAAGTCCCTCCCGTTT 60.225 50.000 0.00 0.00 0.00 3.60
90 91 1.353358 CCCTAAAAAGTCCCTCCCGTT 59.647 52.381 0.00 0.00 0.00 4.44
91 92 0.989602 CCCTAAAAAGTCCCTCCCGT 59.010 55.000 0.00 0.00 0.00 5.28
92 93 1.065636 GTCCCTAAAAAGTCCCTCCCG 60.066 57.143 0.00 0.00 0.00 5.14
93 94 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
94 95 5.013913 AGTTTAGTCCCTAAAAAGTCCCTCC 59.986 44.000 0.00 0.00 37.62 4.30
95 96 6.124316 AGTTTAGTCCCTAAAAAGTCCCTC 57.876 41.667 0.00 0.00 37.62 4.30
96 97 7.021251 TCTAGTTTAGTCCCTAAAAAGTCCCT 58.979 38.462 0.00 0.00 37.62 4.20
97 98 7.102346 GTCTAGTTTAGTCCCTAAAAAGTCCC 58.898 42.308 0.00 0.00 37.62 4.46
98 99 7.674120 TGTCTAGTTTAGTCCCTAAAAAGTCC 58.326 38.462 0.00 0.00 37.62 3.85
99 100 9.722184 AATGTCTAGTTTAGTCCCTAAAAAGTC 57.278 33.333 0.00 0.22 37.62 3.01
103 104 9.720769 CTCAAATGTCTAGTTTAGTCCCTAAAA 57.279 33.333 0.00 0.00 37.62 1.52
104 105 9.096823 TCTCAAATGTCTAGTTTAGTCCCTAAA 57.903 33.333 0.00 0.00 34.12 1.85
105 106 8.529476 GTCTCAAATGTCTAGTTTAGTCCCTAA 58.471 37.037 0.00 0.00 0.00 2.69
106 107 7.894364 AGTCTCAAATGTCTAGTTTAGTCCCTA 59.106 37.037 0.00 0.00 0.00 3.53
107 108 6.726764 AGTCTCAAATGTCTAGTTTAGTCCCT 59.273 38.462 0.00 0.00 0.00 4.20
108 109 6.937392 AGTCTCAAATGTCTAGTTTAGTCCC 58.063 40.000 0.00 0.00 0.00 4.46
109 110 9.924650 TTTAGTCTCAAATGTCTAGTTTAGTCC 57.075 33.333 0.00 0.00 0.00 3.85
127 128 9.528018 CCTTGAGAGTATTCTTCATTTAGTCTC 57.472 37.037 6.95 6.95 40.48 3.36
128 129 9.261035 TCCTTGAGAGTATTCTTCATTTAGTCT 57.739 33.333 0.00 0.00 32.53 3.24
129 130 9.528018 CTCCTTGAGAGTATTCTTCATTTAGTC 57.472 37.037 0.00 0.00 37.87 2.59
130 131 9.261035 TCTCCTTGAGAGTATTCTTCATTTAGT 57.739 33.333 0.00 0.00 43.71 2.24
161 162 6.876789 GGAAAAGTCTCAAAAAGTCCCAAAAA 59.123 34.615 0.00 0.00 0.00 1.94
162 163 6.014156 TGGAAAAGTCTCAAAAAGTCCCAAAA 60.014 34.615 0.00 0.00 0.00 2.44
163 164 5.482175 TGGAAAAGTCTCAAAAAGTCCCAAA 59.518 36.000 0.00 0.00 0.00 3.28
164 165 5.020132 TGGAAAAGTCTCAAAAAGTCCCAA 58.980 37.500 0.00 0.00 0.00 4.12
165 166 4.605183 TGGAAAAGTCTCAAAAAGTCCCA 58.395 39.130 0.00 0.00 0.00 4.37
166 167 5.105513 TGTTGGAAAAGTCTCAAAAAGTCCC 60.106 40.000 0.00 0.00 0.00 4.46
167 168 5.961272 TGTTGGAAAAGTCTCAAAAAGTCC 58.039 37.500 0.00 0.00 0.00 3.85
168 169 7.464577 GCATTGTTGGAAAAGTCTCAAAAAGTC 60.465 37.037 0.00 0.00 0.00 3.01
169 170 6.313658 GCATTGTTGGAAAAGTCTCAAAAAGT 59.686 34.615 0.00 0.00 0.00 2.66
170 171 6.238184 GGCATTGTTGGAAAAGTCTCAAAAAG 60.238 38.462 0.00 0.00 0.00 2.27
171 172 5.584251 GGCATTGTTGGAAAAGTCTCAAAAA 59.416 36.000 0.00 0.00 0.00 1.94
172 173 5.115480 GGCATTGTTGGAAAAGTCTCAAAA 58.885 37.500 0.00 0.00 0.00 2.44
173 174 4.442753 GGGCATTGTTGGAAAAGTCTCAAA 60.443 41.667 0.00 0.00 0.00 2.69
174 175 3.069443 GGGCATTGTTGGAAAAGTCTCAA 59.931 43.478 0.00 0.00 0.00 3.02
175 176 2.627699 GGGCATTGTTGGAAAAGTCTCA 59.372 45.455 0.00 0.00 0.00 3.27
176 177 2.029020 GGGGCATTGTTGGAAAAGTCTC 60.029 50.000 0.00 0.00 0.00 3.36
177 178 1.970640 GGGGCATTGTTGGAAAAGTCT 59.029 47.619 0.00 0.00 0.00 3.24
178 179 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
179 180 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
180 181 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
181 182 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
182 183 0.189574 TGGAGGGGCATTGTTGGAAA 59.810 50.000 0.00 0.00 0.00 3.13
183 184 0.413037 ATGGAGGGGCATTGTTGGAA 59.587 50.000 0.00 0.00 0.00 3.53
184 185 0.324552 CATGGAGGGGCATTGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
185 186 1.963464 GCATGGAGGGGCATTGTTGG 61.963 60.000 0.00 0.00 0.00 3.77
186 187 1.259142 TGCATGGAGGGGCATTGTTG 61.259 55.000 0.00 0.00 34.58 3.33
187 188 1.078891 TGCATGGAGGGGCATTGTT 59.921 52.632 0.00 0.00 34.58 2.83
188 189 2.772224 TGCATGGAGGGGCATTGT 59.228 55.556 0.00 0.00 34.58 2.71
192 193 1.951923 AATGGATGCATGGAGGGGCA 61.952 55.000 2.46 0.00 45.23 5.36
193 194 1.152398 AATGGATGCATGGAGGGGC 60.152 57.895 2.46 0.00 0.00 5.80
194 195 0.830444 CCAATGGATGCATGGAGGGG 60.830 60.000 2.46 0.00 36.27 4.79
195 196 1.469335 GCCAATGGATGCATGGAGGG 61.469 60.000 2.46 10.22 36.27 4.30
196 197 1.469335 GGCCAATGGATGCATGGAGG 61.469 60.000 2.46 12.51 36.27 4.30
197 198 1.469335 GGGCCAATGGATGCATGGAG 61.469 60.000 2.46 4.05 36.27 3.86
198 199 1.458020 GGGCCAATGGATGCATGGA 60.458 57.895 2.46 0.00 36.27 3.41
199 200 2.863346 CGGGCCAATGGATGCATGG 61.863 63.158 2.46 0.11 37.29 3.66
200 201 2.732016 CGGGCCAATGGATGCATG 59.268 61.111 2.46 0.00 0.00 4.06
201 202 3.228759 GCGGGCCAATGGATGCAT 61.229 61.111 2.05 0.00 0.00 3.96
221 222 2.368221 ACAATCAAACAACACCATGGGG 59.632 45.455 14.08 14.08 41.29 4.96
222 223 3.749665 ACAATCAAACAACACCATGGG 57.250 42.857 18.09 7.72 0.00 4.00
223 224 7.727331 AAATAACAATCAAACAACACCATGG 57.273 32.000 11.19 11.19 0.00 3.66
247 248 7.588169 ACCATGTTGCCCCTAGTATATAAAAA 58.412 34.615 0.00 0.00 0.00 1.94
248 249 7.147284 TGACCATGTTGCCCCTAGTATATAAAA 60.147 37.037 0.00 0.00 0.00 1.52
249 250 6.330514 TGACCATGTTGCCCCTAGTATATAAA 59.669 38.462 0.00 0.00 0.00 1.40
250 251 5.847265 TGACCATGTTGCCCCTAGTATATAA 59.153 40.000 0.00 0.00 0.00 0.98
251 252 5.407936 TGACCATGTTGCCCCTAGTATATA 58.592 41.667 0.00 0.00 0.00 0.86
252 253 4.239495 TGACCATGTTGCCCCTAGTATAT 58.761 43.478 0.00 0.00 0.00 0.86
253 254 3.659841 TGACCATGTTGCCCCTAGTATA 58.340 45.455 0.00 0.00 0.00 1.47
254 255 2.487775 TGACCATGTTGCCCCTAGTAT 58.512 47.619 0.00 0.00 0.00 2.12
255 256 1.959710 TGACCATGTTGCCCCTAGTA 58.040 50.000 0.00 0.00 0.00 1.82
256 257 1.298953 ATGACCATGTTGCCCCTAGT 58.701 50.000 0.00 0.00 0.00 2.57
257 258 2.442236 AATGACCATGTTGCCCCTAG 57.558 50.000 0.00 0.00 0.00 3.02
258 259 2.917713 AAATGACCATGTTGCCCCTA 57.082 45.000 0.00 0.00 0.00 3.53
259 260 2.917713 TAAATGACCATGTTGCCCCT 57.082 45.000 0.00 0.00 0.00 4.79
260 261 5.356426 GTTATTAAATGACCATGTTGCCCC 58.644 41.667 0.00 0.00 0.00 5.80
261 262 5.128663 AGGTTATTAAATGACCATGTTGCCC 59.871 40.000 6.26 0.00 41.10 5.36
262 263 6.096846 AGAGGTTATTAAATGACCATGTTGCC 59.903 38.462 6.26 0.00 41.10 4.52
263 264 7.100458 AGAGGTTATTAAATGACCATGTTGC 57.900 36.000 6.26 0.00 41.10 4.17
264 265 8.840321 CCTAGAGGTTATTAAATGACCATGTTG 58.160 37.037 6.26 0.00 41.10 3.33
265 266 8.778059 TCCTAGAGGTTATTAAATGACCATGTT 58.222 33.333 6.26 0.00 41.10 2.71
266 267 8.331931 TCCTAGAGGTTATTAAATGACCATGT 57.668 34.615 6.26 0.00 41.10 3.21
267 268 9.277783 CTTCCTAGAGGTTATTAAATGACCATG 57.722 37.037 6.26 0.00 41.10 3.66
268 269 8.440771 CCTTCCTAGAGGTTATTAAATGACCAT 58.559 37.037 6.26 0.00 41.10 3.55
269 270 7.147373 CCCTTCCTAGAGGTTATTAAATGACCA 60.147 40.741 6.26 0.00 41.10 4.02
270 271 7.072076 TCCCTTCCTAGAGGTTATTAAATGACC 59.928 40.741 0.00 0.00 39.09 4.02
271 272 7.932491 GTCCCTTCCTAGAGGTTATTAAATGAC 59.068 40.741 0.00 0.00 34.88 3.06
272 273 7.849904 AGTCCCTTCCTAGAGGTTATTAAATGA 59.150 37.037 0.00 0.00 34.88 2.57
273 274 8.035448 AGTCCCTTCCTAGAGGTTATTAAATG 57.965 38.462 0.00 0.00 34.88 2.32
274 275 9.382307 CTAGTCCCTTCCTAGAGGTTATTAAAT 57.618 37.037 0.00 0.00 35.01 1.40
275 276 8.572221 TCTAGTCCCTTCCTAGAGGTTATTAAA 58.428 37.037 0.00 0.00 36.78 1.52
276 277 8.122646 TCTAGTCCCTTCCTAGAGGTTATTAA 57.877 38.462 0.00 0.00 36.78 1.40
277 278 7.718399 TCTAGTCCCTTCCTAGAGGTTATTA 57.282 40.000 0.00 0.00 36.78 0.98
278 279 6.609379 TCTAGTCCCTTCCTAGAGGTTATT 57.391 41.667 0.00 0.00 36.78 1.40
285 286 5.799978 AAAGTCTCTAGTCCCTTCCTAGA 57.200 43.478 0.00 0.00 38.81 2.43
286 287 6.860790 AAAAAGTCTCTAGTCCCTTCCTAG 57.139 41.667 0.00 0.00 34.47 3.02
287 288 7.477008 ACTAAAAAGTCTCTAGTCCCTTCCTA 58.523 38.462 0.00 0.00 0.00 2.94
288 289 6.324544 ACTAAAAAGTCTCTAGTCCCTTCCT 58.675 40.000 0.00 0.00 0.00 3.36
289 290 6.438108 AGACTAAAAAGTCTCTAGTCCCTTCC 59.562 42.308 2.22 0.00 45.09 3.46
290 291 7.470935 AGACTAAAAAGTCTCTAGTCCCTTC 57.529 40.000 2.22 0.00 45.09 3.46
302 303 9.841880 AAGTTTGTTTTCAGAGACTAAAAAGTC 57.158 29.630 0.00 0.00 39.00 3.01
309 310 8.899771 CCCTAAAAAGTTTGTTTTCAGAGACTA 58.100 33.333 0.00 0.00 32.95 2.59
310 311 7.614192 TCCCTAAAAAGTTTGTTTTCAGAGACT 59.386 33.333 0.00 0.00 32.95 3.24
311 312 7.701078 GTCCCTAAAAAGTTTGTTTTCAGAGAC 59.299 37.037 0.00 0.00 32.95 3.36
312 313 7.614192 AGTCCCTAAAAAGTTTGTTTTCAGAGA 59.386 33.333 0.00 0.00 32.95 3.10
313 314 7.772166 AGTCCCTAAAAAGTTTGTTTTCAGAG 58.228 34.615 0.00 0.00 32.95 3.35
314 315 7.712204 AGTCCCTAAAAAGTTTGTTTTCAGA 57.288 32.000 0.00 0.00 32.95 3.27
315 316 8.135529 CCTAGTCCCTAAAAAGTTTGTTTTCAG 58.864 37.037 0.00 0.00 32.95 3.02
316 317 7.068962 CCCTAGTCCCTAAAAAGTTTGTTTTCA 59.931 37.037 0.00 0.00 32.95 2.69
317 318 7.286087 TCCCTAGTCCCTAAAAAGTTTGTTTTC 59.714 37.037 0.00 0.00 32.95 2.29
318 319 7.069085 GTCCCTAGTCCCTAAAAAGTTTGTTTT 59.931 37.037 0.00 0.00 35.02 2.43
319 320 6.548622 GTCCCTAGTCCCTAAAAAGTTTGTTT 59.451 38.462 0.00 0.00 0.00 2.83
320 321 6.066690 GTCCCTAGTCCCTAAAAAGTTTGTT 58.933 40.000 0.00 0.00 0.00 2.83
321 322 5.371769 AGTCCCTAGTCCCTAAAAAGTTTGT 59.628 40.000 0.00 0.00 0.00 2.83
322 323 5.877491 AGTCCCTAGTCCCTAAAAAGTTTG 58.123 41.667 0.00 0.00 0.00 2.93
323 324 6.526056 AAGTCCCTAGTCCCTAAAAAGTTT 57.474 37.500 0.00 0.00 0.00 2.66
324 325 6.304624 CAAAGTCCCTAGTCCCTAAAAAGTT 58.695 40.000 0.00 0.00 0.00 2.66
325 326 5.222068 CCAAAGTCCCTAGTCCCTAAAAAGT 60.222 44.000 0.00 0.00 0.00 2.66
326 327 5.254115 CCAAAGTCCCTAGTCCCTAAAAAG 58.746 45.833 0.00 0.00 0.00 2.27
327 328 4.043686 CCCAAAGTCCCTAGTCCCTAAAAA 59.956 45.833 0.00 0.00 0.00 1.94
328 329 3.590182 CCCAAAGTCCCTAGTCCCTAAAA 59.410 47.826 0.00 0.00 0.00 1.52
329 330 3.181392 TCCCAAAGTCCCTAGTCCCTAAA 60.181 47.826 0.00 0.00 0.00 1.85
330 331 2.387861 TCCCAAAGTCCCTAGTCCCTAA 59.612 50.000 0.00 0.00 0.00 2.69
331 332 2.013006 TCCCAAAGTCCCTAGTCCCTA 58.987 52.381 0.00 0.00 0.00 3.53
332 333 0.797579 TCCCAAAGTCCCTAGTCCCT 59.202 55.000 0.00 0.00 0.00 4.20
333 334 0.910338 GTCCCAAAGTCCCTAGTCCC 59.090 60.000 0.00 0.00 0.00 4.46
334 335 1.954035 AGTCCCAAAGTCCCTAGTCC 58.046 55.000 0.00 0.00 0.00 3.85
335 336 3.978610 TCTAGTCCCAAAGTCCCTAGTC 58.021 50.000 0.00 0.00 0.00 2.59
336 337 4.415224 TTCTAGTCCCAAAGTCCCTAGT 57.585 45.455 0.00 0.00 0.00 2.57
337 338 5.757099 TTTTCTAGTCCCAAAGTCCCTAG 57.243 43.478 0.00 0.00 0.00 3.02
358 359 9.362151 TGTTTGGTTCATAAGTCTTAGGATTTT 57.638 29.630 7.74 0.00 0.00 1.82
359 360 8.934023 TGTTTGGTTCATAAGTCTTAGGATTT 57.066 30.769 7.74 0.00 0.00 2.17
360 361 7.611855 CCTGTTTGGTTCATAAGTCTTAGGATT 59.388 37.037 7.74 0.00 0.00 3.01
361 362 7.112779 CCTGTTTGGTTCATAAGTCTTAGGAT 58.887 38.462 7.74 0.00 0.00 3.24
362 363 6.472887 CCTGTTTGGTTCATAAGTCTTAGGA 58.527 40.000 2.85 2.85 0.00 2.94
363 364 5.648092 CCCTGTTTGGTTCATAAGTCTTAGG 59.352 44.000 0.00 0.00 0.00 2.69
364 365 6.238648 ACCCTGTTTGGTTCATAAGTCTTAG 58.761 40.000 0.00 0.00 33.91 2.18
365 366 6.043938 AGACCCTGTTTGGTTCATAAGTCTTA 59.956 38.462 0.00 0.00 39.24 2.10
366 367 5.061721 ACCCTGTTTGGTTCATAAGTCTT 57.938 39.130 0.00 0.00 33.91 3.01
367 368 4.351111 AGACCCTGTTTGGTTCATAAGTCT 59.649 41.667 0.00 0.00 39.24 3.24
368 369 4.652822 AGACCCTGTTTGGTTCATAAGTC 58.347 43.478 0.00 0.00 39.24 3.01
369 370 4.724279 AGACCCTGTTTGGTTCATAAGT 57.276 40.909 0.00 0.00 39.24 2.24
370 371 6.238648 ACTAAGACCCTGTTTGGTTCATAAG 58.761 40.000 0.00 0.00 39.24 1.73
371 372 6.195600 ACTAAGACCCTGTTTGGTTCATAA 57.804 37.500 0.00 0.00 39.24 1.90
372 373 5.568023 CGACTAAGACCCTGTTTGGTTCATA 60.568 44.000 0.00 0.00 39.24 2.15
373 374 4.652822 GACTAAGACCCTGTTTGGTTCAT 58.347 43.478 0.00 0.00 39.24 2.57
374 375 3.493699 CGACTAAGACCCTGTTTGGTTCA 60.494 47.826 0.00 0.00 39.24 3.18
375 376 3.064931 CGACTAAGACCCTGTTTGGTTC 58.935 50.000 0.00 0.00 39.24 3.62
376 377 2.701951 TCGACTAAGACCCTGTTTGGTT 59.298 45.455 0.00 0.00 39.24 3.67
377 378 2.322658 TCGACTAAGACCCTGTTTGGT 58.677 47.619 0.00 0.00 42.79 3.67
378 379 3.262420 CATCGACTAAGACCCTGTTTGG 58.738 50.000 0.00 0.00 0.00 3.28
379 380 2.673368 GCATCGACTAAGACCCTGTTTG 59.327 50.000 0.00 0.00 0.00 2.93
380 381 2.567615 AGCATCGACTAAGACCCTGTTT 59.432 45.455 0.00 0.00 0.00 2.83
381 382 2.180276 AGCATCGACTAAGACCCTGTT 58.820 47.619 0.00 0.00 0.00 3.16
382 383 1.853963 AGCATCGACTAAGACCCTGT 58.146 50.000 0.00 0.00 0.00 4.00
383 384 5.645624 CATATAGCATCGACTAAGACCCTG 58.354 45.833 0.00 0.00 0.00 4.45
384 385 4.158764 GCATATAGCATCGACTAAGACCCT 59.841 45.833 0.00 0.00 44.79 4.34
385 386 4.425520 GCATATAGCATCGACTAAGACCC 58.574 47.826 0.00 0.00 44.79 4.46
399 400 7.912056 TCAGGTAAGATTTCATGCATATAGC 57.088 36.000 0.00 0.00 45.96 2.97
403 404 8.632679 GGATTTTCAGGTAAGATTTCATGCATA 58.367 33.333 0.00 0.00 0.00 3.14
404 405 7.124599 TGGATTTTCAGGTAAGATTTCATGCAT 59.875 33.333 0.00 0.00 0.00 3.96
405 406 6.436847 TGGATTTTCAGGTAAGATTTCATGCA 59.563 34.615 0.00 0.00 0.00 3.96
406 407 6.866480 TGGATTTTCAGGTAAGATTTCATGC 58.134 36.000 0.00 0.00 0.00 4.06
407 408 7.437267 GCATGGATTTTCAGGTAAGATTTCATG 59.563 37.037 0.00 0.00 32.73 3.07
408 409 7.124599 TGCATGGATTTTCAGGTAAGATTTCAT 59.875 33.333 0.00 0.00 0.00 2.57
409 410 6.436847 TGCATGGATTTTCAGGTAAGATTTCA 59.563 34.615 0.00 0.00 0.00 2.69
410 411 6.866480 TGCATGGATTTTCAGGTAAGATTTC 58.134 36.000 0.00 0.00 0.00 2.17
411 412 6.855763 TGCATGGATTTTCAGGTAAGATTT 57.144 33.333 0.00 0.00 0.00 2.17
412 413 6.855763 TTGCATGGATTTTCAGGTAAGATT 57.144 33.333 0.00 0.00 0.00 2.40
413 414 6.438425 ACTTTGCATGGATTTTCAGGTAAGAT 59.562 34.615 0.00 0.00 0.00 2.40
414 415 5.774690 ACTTTGCATGGATTTTCAGGTAAGA 59.225 36.000 0.00 0.00 0.00 2.10
415 416 6.029346 ACTTTGCATGGATTTTCAGGTAAG 57.971 37.500 0.00 0.00 0.00 2.34
416 417 6.418057 AACTTTGCATGGATTTTCAGGTAA 57.582 33.333 0.00 0.00 0.00 2.85
417 418 6.418057 AAACTTTGCATGGATTTTCAGGTA 57.582 33.333 0.00 0.00 0.00 3.08
418 419 4.961438 AACTTTGCATGGATTTTCAGGT 57.039 36.364 0.00 0.00 0.00 4.00
419 420 5.993441 AGAAAACTTTGCATGGATTTTCAGG 59.007 36.000 19.98 0.00 40.25 3.86
420 421 7.486802 AAGAAAACTTTGCATGGATTTTCAG 57.513 32.000 19.98 3.02 40.25 3.02
421 422 7.862512 AAAGAAAACTTTGCATGGATTTTCA 57.137 28.000 19.98 0.00 40.25 2.69
463 464 9.557061 AGTCTTAGTCGAGTGATACAACATATA 57.443 33.333 2.10 0.00 0.00 0.86
464 465 8.453238 AGTCTTAGTCGAGTGATACAACATAT 57.547 34.615 2.10 0.00 0.00 1.78
465 466 7.254353 CGAGTCTTAGTCGAGTGATACAACATA 60.254 40.741 2.10 0.00 43.33 2.29
466 467 6.457122 CGAGTCTTAGTCGAGTGATACAACAT 60.457 42.308 2.10 0.00 43.33 2.71
467 468 5.163884 CGAGTCTTAGTCGAGTGATACAACA 60.164 44.000 2.10 0.00 43.33 3.33
468 469 5.163874 ACGAGTCTTAGTCGAGTGATACAAC 60.164 44.000 10.86 0.00 43.33 3.32
469 470 4.934001 ACGAGTCTTAGTCGAGTGATACAA 59.066 41.667 10.86 0.00 43.33 2.41
470 471 4.502016 ACGAGTCTTAGTCGAGTGATACA 58.498 43.478 10.86 0.00 43.33 2.29
471 472 5.467902 AACGAGTCTTAGTCGAGTGATAC 57.532 43.478 10.86 0.00 43.33 2.24
472 473 6.815641 ACTTAACGAGTCTTAGTCGAGTGATA 59.184 38.462 10.86 0.00 43.33 2.15
473 474 5.642919 ACTTAACGAGTCTTAGTCGAGTGAT 59.357 40.000 10.86 0.00 43.33 3.06
474 475 4.993584 ACTTAACGAGTCTTAGTCGAGTGA 59.006 41.667 10.86 0.00 43.33 3.41
475 476 5.080731 CACTTAACGAGTCTTAGTCGAGTG 58.919 45.833 10.86 9.73 43.33 3.51
476 477 4.754114 ACACTTAACGAGTCTTAGTCGAGT 59.246 41.667 10.86 0.00 43.33 4.18
477 478 5.107182 TGACACTTAACGAGTCTTAGTCGAG 60.107 44.000 10.86 1.32 43.33 4.04
478 479 4.751600 TGACACTTAACGAGTCTTAGTCGA 59.248 41.667 10.86 0.00 43.33 4.20
479 480 5.027206 TGACACTTAACGAGTCTTAGTCG 57.973 43.478 2.74 2.74 45.89 4.18
480 481 5.999721 ACTGACACTTAACGAGTCTTAGTC 58.000 41.667 0.00 0.00 36.10 2.59
481 482 6.388435 AACTGACACTTAACGAGTCTTAGT 57.612 37.500 0.00 0.00 36.10 2.24
482 483 8.792831 TTTAACTGACACTTAACGAGTCTTAG 57.207 34.615 0.00 0.00 36.10 2.18
483 484 9.241317 CTTTTAACTGACACTTAACGAGTCTTA 57.759 33.333 0.00 0.00 36.10 2.10
484 485 7.977853 TCTTTTAACTGACACTTAACGAGTCTT 59.022 33.333 0.00 0.00 36.10 3.01
485 486 7.486647 TCTTTTAACTGACACTTAACGAGTCT 58.513 34.615 0.00 0.00 36.10 3.24
486 487 7.689953 TCTTTTAACTGACACTTAACGAGTC 57.310 36.000 0.00 0.00 36.10 3.36
487 488 7.709613 ACATCTTTTAACTGACACTTAACGAGT 59.290 33.333 0.00 0.00 39.89 4.18
488 489 8.073355 ACATCTTTTAACTGACACTTAACGAG 57.927 34.615 0.00 0.00 0.00 4.18
489 490 9.188588 CTACATCTTTTAACTGACACTTAACGA 57.811 33.333 0.00 0.00 0.00 3.85
490 491 7.950496 GCTACATCTTTTAACTGACACTTAACG 59.050 37.037 0.00 0.00 0.00 3.18
491 492 8.228464 GGCTACATCTTTTAACTGACACTTAAC 58.772 37.037 0.00 0.00 0.00 2.01
492 493 7.934665 TGGCTACATCTTTTAACTGACACTTAA 59.065 33.333 0.00 0.00 0.00 1.85
493 494 7.386848 GTGGCTACATCTTTTAACTGACACTTA 59.613 37.037 0.00 0.00 0.00 2.24
494 495 6.204882 GTGGCTACATCTTTTAACTGACACTT 59.795 38.462 0.00 0.00 0.00 3.16
495 496 5.701290 GTGGCTACATCTTTTAACTGACACT 59.299 40.000 0.00 0.00 0.00 3.55
496 497 5.468746 TGTGGCTACATCTTTTAACTGACAC 59.531 40.000 0.00 0.00 0.00 3.67
497 498 5.468746 GTGTGGCTACATCTTTTAACTGACA 59.531 40.000 6.06 0.00 39.39 3.58
498 499 5.106673 GGTGTGGCTACATCTTTTAACTGAC 60.107 44.000 6.06 0.00 39.39 3.51
499 500 5.001232 GGTGTGGCTACATCTTTTAACTGA 58.999 41.667 6.06 0.00 39.39 3.41
500 501 4.156008 GGGTGTGGCTACATCTTTTAACTG 59.844 45.833 13.62 0.00 38.04 3.16
501 502 4.332828 GGGTGTGGCTACATCTTTTAACT 58.667 43.478 13.62 0.00 38.04 2.24
502 503 3.442625 GGGGTGTGGCTACATCTTTTAAC 59.557 47.826 13.62 0.00 38.04 2.01
503 504 3.332485 AGGGGTGTGGCTACATCTTTTAA 59.668 43.478 13.62 0.00 38.04 1.52
504 505 2.916934 AGGGGTGTGGCTACATCTTTTA 59.083 45.455 13.62 0.00 38.04 1.52
505 506 1.710809 AGGGGTGTGGCTACATCTTTT 59.289 47.619 13.62 0.00 38.04 2.27
506 507 1.372501 AGGGGTGTGGCTACATCTTT 58.627 50.000 13.62 0.00 38.04 2.52
507 508 2.263895 TAGGGGTGTGGCTACATCTT 57.736 50.000 13.62 4.98 38.04 2.40
508 509 2.263895 TTAGGGGTGTGGCTACATCT 57.736 50.000 13.62 10.46 38.04 2.90
509 510 3.359695 TTTTAGGGGTGTGGCTACATC 57.640 47.619 6.06 5.31 39.39 3.06
510 511 3.818295 TTTTTAGGGGTGTGGCTACAT 57.182 42.857 6.06 0.00 39.39 2.29
528 529 5.782047 TCATCGTTTTGCATCCAGATTTTT 58.218 33.333 0.00 0.00 0.00 1.94
529 530 5.389859 TCATCGTTTTGCATCCAGATTTT 57.610 34.783 0.00 0.00 0.00 1.82
530 531 5.163513 GTTCATCGTTTTGCATCCAGATTT 58.836 37.500 0.00 0.00 0.00 2.17
531 532 4.218200 TGTTCATCGTTTTGCATCCAGATT 59.782 37.500 0.00 0.00 0.00 2.40
532 533 3.758023 TGTTCATCGTTTTGCATCCAGAT 59.242 39.130 0.00 0.00 0.00 2.90
545 546 6.083098 TGATTGATTTTTGGTGTTCATCGT 57.917 33.333 0.00 0.00 0.00 3.73
556 557 4.870363 ACTGACGGGTTGATTGATTTTTG 58.130 39.130 0.00 0.00 0.00 2.44
603 604 3.171828 TTCGGTCTTTCAGCGGCCA 62.172 57.895 2.24 0.00 46.42 5.36
619 620 3.059597 CAGTGACACGAATGGTTCACTTC 60.060 47.826 0.00 0.00 41.14 3.01
624 625 0.517316 GCCAGTGACACGAATGGTTC 59.483 55.000 12.50 0.00 35.17 3.62
633 634 3.025619 GCACAGTGCCAGTGACAC 58.974 61.111 15.27 0.59 39.30 3.67
646 647 0.033601 AGTTGTGGGTTTCTGGCACA 60.034 50.000 0.00 0.00 0.00 4.57
647 648 0.668535 GAGTTGTGGGTTTCTGGCAC 59.331 55.000 0.00 0.00 0.00 5.01
670 671 1.181786 CTCTCGCTCCTTCAGTCCTT 58.818 55.000 0.00 0.00 0.00 3.36
671 672 1.319614 GCTCTCGCTCCTTCAGTCCT 61.320 60.000 0.00 0.00 0.00 3.85
672 673 1.140804 GCTCTCGCTCCTTCAGTCC 59.859 63.158 0.00 0.00 0.00 3.85
673 674 1.226547 CGCTCTCGCTCCTTCAGTC 60.227 63.158 0.00 0.00 0.00 3.51
674 675 0.677098 TACGCTCTCGCTCCTTCAGT 60.677 55.000 0.00 0.00 39.84 3.41
675 676 0.248296 GTACGCTCTCGCTCCTTCAG 60.248 60.000 0.00 0.00 39.84 3.02
676 677 0.958876 TGTACGCTCTCGCTCCTTCA 60.959 55.000 0.00 0.00 39.84 3.02
677 678 0.382515 ATGTACGCTCTCGCTCCTTC 59.617 55.000 0.00 0.00 39.84 3.46
678 679 1.604755 CTATGTACGCTCTCGCTCCTT 59.395 52.381 0.00 0.00 39.84 3.36
695 696 2.273449 GTGGCCTGCACCAGCTAT 59.727 61.111 3.32 0.00 41.46 2.97
718 724 4.756135 TGATGCCAATTTTCCTTTTGAAGC 59.244 37.500 0.00 0.00 33.63 3.86
720 726 5.678583 TGTGATGCCAATTTTCCTTTTGAA 58.321 33.333 0.00 0.00 0.00 2.69
726 732 3.094572 CTCCTGTGATGCCAATTTTCCT 58.905 45.455 0.00 0.00 0.00 3.36
876 884 2.760385 GAGGGAGGGGACGGACTG 60.760 72.222 0.00 0.00 0.00 3.51
880 888 4.862823 GAGGGAGGGAGGGGACGG 62.863 77.778 0.00 0.00 0.00 4.79
928 940 4.944372 GACGCGCACCGGATAGGG 62.944 72.222 9.46 9.42 46.96 3.53
930 942 4.201679 TGGACGCGCACCGGATAG 62.202 66.667 9.46 0.00 42.52 2.08
931 943 4.501714 GTGGACGCGCACCGGATA 62.502 66.667 9.46 0.00 42.52 2.59
1008 1022 6.127054 GGTGGATGATTGATTATATCCCGAGA 60.127 42.308 0.00 0.00 38.62 4.04
1019 1033 1.492176 AGAGCGGGTGGATGATTGATT 59.508 47.619 0.00 0.00 0.00 2.57
1020 1034 1.135094 AGAGCGGGTGGATGATTGAT 58.865 50.000 0.00 0.00 0.00 2.57
1021 1035 0.911769 AAGAGCGGGTGGATGATTGA 59.088 50.000 0.00 0.00 0.00 2.57
1022 1036 2.620251 TAAGAGCGGGTGGATGATTG 57.380 50.000 0.00 0.00 0.00 2.67
1314 1541 0.463204 TCCTCGTAGTCCTCGTCGAT 59.537 55.000 0.00 0.00 0.00 3.59
1445 1672 4.620184 AGACGCGTACACAGAAGATAAAAC 59.380 41.667 13.97 0.00 0.00 2.43
1499 1732 0.391130 GACCTGGTCTGCACGCATTA 60.391 55.000 19.53 0.00 0.00 1.90
1721 1954 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
1722 1955 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1729 1962 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1730 1963 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1731 1964 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1732 1965 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1733 1966 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1734 1967 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1735 1968 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1736 1969 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1737 1970 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1738 1971 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1739 1972 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1740 1973 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1741 1974 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1742 1975 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1743 1976 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1744 1977 5.221422 GGAAGAGAGAGAGAGAGAGAGAGAG 60.221 52.000 0.00 0.00 0.00 3.20
1745 1978 4.651503 GGAAGAGAGAGAGAGAGAGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
1746 1979 4.500545 CGGAAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
1747 1980 3.384789 CGGAAGAGAGAGAGAGAGAGAGA 59.615 52.174 0.00 0.00 0.00 3.10
1748 1981 3.133003 ACGGAAGAGAGAGAGAGAGAGAG 59.867 52.174 0.00 0.00 0.00 3.20
1749 1982 3.104512 ACGGAAGAGAGAGAGAGAGAGA 58.895 50.000 0.00 0.00 0.00 3.10
1750 1983 3.543680 ACGGAAGAGAGAGAGAGAGAG 57.456 52.381 0.00 0.00 0.00 3.20
1751 1984 3.008594 ACAACGGAAGAGAGAGAGAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
1752 1985 3.343617 ACAACGGAAGAGAGAGAGAGAG 58.656 50.000 0.00 0.00 0.00 3.20
1753 1986 3.426787 ACAACGGAAGAGAGAGAGAGA 57.573 47.619 0.00 0.00 0.00 3.10
1754 1987 4.022762 TCAAACAACGGAAGAGAGAGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
1929 2162 8.255394 TCATATAACTCTGTTGAACACATGTG 57.745 34.615 24.25 24.25 33.76 3.21
1930 2163 8.886719 CATCATATAACTCTGTTGAACACATGT 58.113 33.333 0.00 0.00 33.76 3.21
2033 2271 5.276301 CGACCACATTGTTCAACAAAACATG 60.276 40.000 7.14 3.52 41.96 3.21
2059 2297 4.517952 TGGCACACTCATTTTTACCATG 57.482 40.909 0.00 0.00 0.00 3.66
2157 2398 4.384940 TCAATTGAACGAGACATGAACCA 58.615 39.130 5.45 0.00 0.00 3.67
2158 2399 5.122239 TCATCAATTGAACGAGACATGAACC 59.878 40.000 13.09 0.00 0.00 3.62
2316 2558 4.439153 GGAACACCATGAGCATAATGTGTG 60.439 45.833 11.06 7.38 0.00 3.82
2327 2569 4.543590 ACAGAACTAGGAACACCATGAG 57.456 45.455 0.00 0.00 0.00 2.90
2498 2743 9.821240 AGACATCAGAGAATCACTATATAAGGT 57.179 33.333 0.00 0.00 37.82 3.50
2702 2947 7.012799 GGATAGGGAAGCTTCATTAAACAAGAG 59.987 40.741 27.02 0.00 0.00 2.85
2711 2956 4.467769 CATGTGGATAGGGAAGCTTCATT 58.532 43.478 27.02 16.45 0.00 2.57
2755 3000 4.759693 TGAAGTGTCCGACAATTGCTTAAT 59.240 37.500 18.33 0.00 36.45 1.40
2756 3001 4.024387 GTGAAGTGTCCGACAATTGCTTAA 60.024 41.667 18.33 1.22 36.45 1.85
2864 3112 6.418057 AGGGAATGCAATACAACAAAAAGA 57.582 33.333 0.00 0.00 0.00 2.52
2868 3116 7.014711 TGAGTAAAGGGAATGCAATACAACAAA 59.985 33.333 0.00 0.00 0.00 2.83
2909 3157 1.004277 CTTACCCAAGCTGGCAACCTA 59.996 52.381 0.00 0.00 35.79 3.08
3189 3439 7.809806 CGAGTTGCACAATACATATCTCTATGA 59.190 37.037 0.00 0.00 38.49 2.15
3251 3501 4.753186 TCTTCTACTTTCCTCTCCCACTT 58.247 43.478 0.00 0.00 0.00 3.16
3409 3669 7.601130 CCATCAACTCAAATGTCATCAACAATT 59.399 33.333 0.00 0.00 42.37 2.32
3416 3676 9.512435 CTAAAATCCATCAACTCAAATGTCATC 57.488 33.333 0.00 0.00 0.00 2.92
3417 3677 7.977853 GCTAAAATCCATCAACTCAAATGTCAT 59.022 33.333 0.00 0.00 0.00 3.06
3459 3719 5.367352 TCCTAAGTGGTTTCAGGTACTCAAA 59.633 40.000 0.00 0.00 34.24 2.69
3534 3957 8.635765 ACATTCAGGTATTCAACTACAAATGT 57.364 30.769 0.00 0.00 32.22 2.71
3863 4286 7.714377 ACTGGCATGAATTCTAGAATGACTTAG 59.286 37.037 18.61 12.77 0.00 2.18
3894 4317 5.199723 ACATTGAAGGCCAAACCAATTTTT 58.800 33.333 5.01 0.00 43.14 1.94
3895 4318 4.790937 ACATTGAAGGCCAAACCAATTTT 58.209 34.783 5.01 0.00 43.14 1.82
3896 4319 4.436113 ACATTGAAGGCCAAACCAATTT 57.564 36.364 5.01 0.00 43.14 1.82
3897 4320 5.760484 ATACATTGAAGGCCAAACCAATT 57.240 34.783 5.01 0.00 43.14 2.32
3998 4451 8.029642 ACCACTTCAACAACTAATTTATCTCG 57.970 34.615 0.00 0.00 0.00 4.04
4051 4504 7.028926 TCTCAACTATTAGGTCATTCTCGAC 57.971 40.000 0.00 0.00 35.03 4.20
4158 4611 7.595502 ACTGTCATAGACTCTAAAAACGTCTTG 59.404 37.037 0.00 0.00 38.77 3.02
4213 4667 8.935614 ATAAAACTTTTAACTGCTACTCCCTT 57.064 30.769 0.00 0.00 0.00 3.95
4229 4683 9.003658 CACTCTCCATTGACAGTATAAAACTTT 57.996 33.333 0.00 0.00 35.76 2.66
4256 4710 6.040054 TGCACAATTAGCATAATCAAGCTCAT 59.960 34.615 0.96 0.00 42.05 2.90
4289 4743 3.701542 TCTTGAACTCATCGATAGCCTGT 59.298 43.478 0.00 0.00 0.00 4.00
4455 4910 9.141400 GTAAGTAAACATAAACTCTGAGAGTGG 57.859 37.037 16.95 8.84 42.59 4.00
4507 4962 3.377485 CAGATGGCTTGTTCCTCTCAATG 59.623 47.826 0.00 0.00 0.00 2.82
4600 5055 3.802139 CGCCATAGTCGAGCATTTCTTTA 59.198 43.478 0.00 0.00 0.00 1.85
4677 5135 0.312102 GTCAAGCCTGTGAAGTTGGC 59.688 55.000 0.00 0.00 46.42 4.52
4884 5342 9.033481 ACAACAAACATCAGACAAAAATACATG 57.967 29.630 0.00 0.00 0.00 3.21
4993 5451 8.106462 TCTAATCATTTGTATGGTCCAAGAACA 58.894 33.333 0.00 0.00 32.20 3.18
5696 6161 5.513495 GCCGCGTATGACATAAATTTTTCAA 59.487 36.000 4.92 0.00 0.00 2.69
5752 6217 2.239654 CCATGGTAAAGCAAGGGAGAGA 59.760 50.000 2.57 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.