Multiple sequence alignment - TraesCS1D01G242100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G242100 chr1D 100.000 5015 0 0 1 5015 332579440 332574426 0.000000e+00 9262.0
1 TraesCS1D01G242100 chr1A 91.025 1727 96 31 3320 5015 430237511 430235813 0.000000e+00 2276.0
2 TraesCS1D01G242100 chr1A 88.998 1727 138 25 1610 3316 430239791 430238097 0.000000e+00 2089.0
3 TraesCS1D01G242100 chr1A 91.063 649 30 9 882 1514 430240429 430239793 0.000000e+00 852.0
4 TraesCS1D01G242100 chr1B 90.185 1620 102 36 2701 4291 447324743 447323152 0.000000e+00 2058.0
5 TraesCS1D01G242100 chr1B 93.571 871 35 4 1862 2724 447325949 447325092 0.000000e+00 1279.0
6 TraesCS1D01G242100 chr1B 90.884 713 36 15 905 1613 447327156 447326469 0.000000e+00 929.0
7 TraesCS1D01G242100 chr1B 90.115 607 33 13 4285 4883 447323094 447322507 0.000000e+00 763.0
8 TraesCS1D01G242100 chr1B 86.082 388 24 7 256 636 447327717 447327353 1.690000e-104 390.0
9 TraesCS1D01G242100 chr1B 89.057 265 23 4 1 260 447546354 447546091 1.740000e-84 324.0
10 TraesCS1D01G242100 chr1B 90.909 187 15 1 1613 1797 447326134 447325948 3.000000e-62 250.0
11 TraesCS1D01G242100 chr7A 92.361 144 7 3 1 140 60209468 60209611 8.510000e-48 202.0
12 TraesCS1D01G242100 chr4A 92.361 144 7 3 1 140 67531945 67532088 8.510000e-48 202.0
13 TraesCS1D01G242100 chrUn 91.156 147 9 3 1 143 182457666 182457520 3.960000e-46 196.0
14 TraesCS1D01G242100 chrUn 80.000 145 15 8 151 292 349901866 349901999 1.490000e-15 95.3
15 TraesCS1D01G242100 chr6D 91.156 147 9 3 1 143 430486958 430486812 3.960000e-46 196.0
16 TraesCS1D01G242100 chr6D 95.745 47 2 0 156 202 109870520 109870474 5.380000e-10 76.8
17 TraesCS1D01G242100 chr3A 91.156 147 9 3 1 143 247658742 247658596 3.960000e-46 196.0
18 TraesCS1D01G242100 chr3A 91.156 147 9 3 1 143 681266825 681266679 3.960000e-46 196.0
19 TraesCS1D01G242100 chr2B 91.667 144 8 3 1 140 234519796 234519939 3.960000e-46 196.0
20 TraesCS1D01G242100 chr2A 91.667 144 8 3 1 140 67868104 67868247 3.960000e-46 196.0
21 TraesCS1D01G242100 chr2D 82.979 141 16 6 156 296 602248718 602248586 2.450000e-23 121.0
22 TraesCS1D01G242100 chr2D 82.609 138 16 4 156 293 533126077 533126206 1.140000e-21 115.0
23 TraesCS1D01G242100 chr5D 80.000 145 15 8 151 292 504627623 504627490 1.490000e-15 95.3
24 TraesCS1D01G242100 chr5D 80.000 145 15 8 151 292 504650566 504650433 1.490000e-15 95.3
25 TraesCS1D01G242100 chr5D 80.000 145 16 7 151 292 504673462 504673328 1.490000e-15 95.3
26 TraesCS1D01G242100 chr5D 80.000 145 15 8 151 292 504696430 504696297 1.490000e-15 95.3
27 TraesCS1D01G242100 chr5B 100.000 28 0 0 495 522 77655622 77655595 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G242100 chr1D 332574426 332579440 5014 True 9262.000000 9262 100.000 1 5015 1 chr1D.!!$R1 5014
1 TraesCS1D01G242100 chr1A 430235813 430240429 4616 True 1739.000000 2276 90.362 882 5015 3 chr1A.!!$R1 4133
2 TraesCS1D01G242100 chr1B 447322507 447327717 5210 True 944.833333 2058 90.291 256 4883 6 chr1B.!!$R2 4627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.035458 CGAACTGGGGCTCTTTGTCT 59.965 55.0 0.00 0.00 0.00 3.41 F
174 175 0.115152 CCCTCTTGCCCCCTCTTTTT 59.885 55.0 0.00 0.00 0.00 1.94 F
867 877 0.476771 AAGAAAACCGGCCTGGAAGA 59.523 50.0 18.74 0.00 42.00 2.87 F
868 878 0.698818 AGAAAACCGGCCTGGAAGAT 59.301 50.0 18.74 3.83 42.00 2.40 F
1647 2008 0.861837 GTGCGCGATTGGAGATTAGG 59.138 55.0 12.10 0.00 0.00 2.69 F
3512 4846 0.245539 CCGTGTAGTTCATGGTCCGT 59.754 55.0 0.00 0.00 45.46 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1231 0.394899 CCACCTCCTGCCAAGAATCC 60.395 60.000 0.00 0.0 0.00 3.01 R
1228 1238 1.360393 AACCTTTCCACCTCCTGCCA 61.360 55.000 0.00 0.0 0.00 4.92 R
2638 3010 2.610438 AATGGGATGCTTGGTTGACT 57.390 45.000 0.00 0.0 0.00 3.41 R
2640 3012 3.096092 GGTAAATGGGATGCTTGGTTGA 58.904 45.455 0.00 0.0 0.00 3.18 R
3544 4878 0.396139 CCATGGGGTCCTTCATGTGG 60.396 60.000 2.85 0.0 39.12 4.17 R
4560 6003 0.601311 GTAGGTGATGATCGGCAGGC 60.601 60.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.806571 GTATCTGCCGAAGACGCA 57.193 55.556 0.00 0.00 37.88 5.24
18 19 3.044809 GTATCTGCCGAAGACGCAA 57.955 52.632 0.00 0.00 37.88 4.85
19 20 0.924090 GTATCTGCCGAAGACGCAAG 59.076 55.000 0.00 0.00 37.88 4.01
31 32 3.165498 CGCAAGTAGCCCAACGAC 58.835 61.111 0.00 0.00 41.38 4.34
32 33 1.666553 CGCAAGTAGCCCAACGACA 60.667 57.895 0.00 0.00 41.38 4.35
33 34 1.626654 CGCAAGTAGCCCAACGACAG 61.627 60.000 0.00 0.00 41.38 3.51
34 35 0.320421 GCAAGTAGCCCAACGACAGA 60.320 55.000 0.00 0.00 37.23 3.41
35 36 1.429463 CAAGTAGCCCAACGACAGAC 58.571 55.000 0.00 0.00 0.00 3.51
36 37 1.000955 CAAGTAGCCCAACGACAGACT 59.999 52.381 0.00 0.00 0.00 3.24
37 38 1.339097 AGTAGCCCAACGACAGACTT 58.661 50.000 0.00 0.00 0.00 3.01
38 39 1.000955 AGTAGCCCAACGACAGACTTG 59.999 52.381 0.00 0.00 0.00 3.16
39 40 1.045407 TAGCCCAACGACAGACTTGT 58.955 50.000 0.00 0.00 41.18 3.16
40 41 0.532862 AGCCCAACGACAGACTTGTG 60.533 55.000 0.00 0.00 37.76 3.33
41 42 0.814010 GCCCAACGACAGACTTGTGT 60.814 55.000 0.00 0.00 37.76 3.72
42 43 0.937304 CCCAACGACAGACTTGTGTG 59.063 55.000 0.00 0.00 37.76 3.82
43 44 0.937304 CCAACGACAGACTTGTGTGG 59.063 55.000 3.07 0.00 37.76 4.17
44 45 1.472552 CCAACGACAGACTTGTGTGGA 60.473 52.381 3.07 0.00 37.76 4.02
45 46 1.860950 CAACGACAGACTTGTGTGGAG 59.139 52.381 3.07 0.00 37.76 3.86
46 47 1.112113 ACGACAGACTTGTGTGGAGT 58.888 50.000 3.07 0.00 37.76 3.85
47 48 1.480954 ACGACAGACTTGTGTGGAGTT 59.519 47.619 3.07 0.00 37.76 3.01
48 49 1.860950 CGACAGACTTGTGTGGAGTTG 59.139 52.381 3.07 0.00 37.76 3.16
49 50 2.481276 CGACAGACTTGTGTGGAGTTGA 60.481 50.000 3.07 0.00 37.76 3.18
50 51 3.531538 GACAGACTTGTGTGGAGTTGAA 58.468 45.455 3.07 0.00 37.76 2.69
51 52 4.130118 GACAGACTTGTGTGGAGTTGAAT 58.870 43.478 3.07 0.00 37.76 2.57
52 53 3.879295 ACAGACTTGTGTGGAGTTGAATG 59.121 43.478 3.07 0.00 35.83 2.67
53 54 4.129380 CAGACTTGTGTGGAGTTGAATGA 58.871 43.478 0.00 0.00 0.00 2.57
54 55 4.024556 CAGACTTGTGTGGAGTTGAATGAC 60.025 45.833 0.00 0.00 0.00 3.06
55 56 3.876914 GACTTGTGTGGAGTTGAATGACA 59.123 43.478 0.00 0.00 0.00 3.58
56 57 4.269183 ACTTGTGTGGAGTTGAATGACAA 58.731 39.130 0.00 0.00 36.02 3.18
66 67 1.990799 TGAATGACAACGCGTAGAGG 58.009 50.000 14.46 5.28 0.00 3.69
67 68 1.271379 TGAATGACAACGCGTAGAGGT 59.729 47.619 14.46 9.01 0.00 3.85
68 69 1.918609 GAATGACAACGCGTAGAGGTC 59.081 52.381 14.46 18.08 0.00 3.85
69 70 1.174783 ATGACAACGCGTAGAGGTCT 58.825 50.000 24.00 13.11 0.00 3.85
70 71 0.956633 TGACAACGCGTAGAGGTCTT 59.043 50.000 24.00 2.92 0.00 3.01
71 72 1.335597 TGACAACGCGTAGAGGTCTTG 60.336 52.381 24.00 15.34 0.00 3.02
72 73 0.038526 ACAACGCGTAGAGGTCTTGG 60.039 55.000 14.46 0.00 0.00 3.61
73 74 1.080025 AACGCGTAGAGGTCTTGGC 60.080 57.895 14.46 0.00 0.00 4.52
74 75 2.579787 CGCGTAGAGGTCTTGGCG 60.580 66.667 0.00 9.13 39.03 5.69
75 76 2.882876 GCGTAGAGGTCTTGGCGA 59.117 61.111 0.00 0.00 0.00 5.54
76 77 1.214589 GCGTAGAGGTCTTGGCGAA 59.785 57.895 0.00 0.00 0.00 4.70
77 78 1.077089 GCGTAGAGGTCTTGGCGAAC 61.077 60.000 0.00 0.00 0.00 3.95
78 79 0.526662 CGTAGAGGTCTTGGCGAACT 59.473 55.000 0.00 0.00 44.12 3.01
79 80 1.732732 CGTAGAGGTCTTGGCGAACTG 60.733 57.143 0.00 0.00 40.61 3.16
80 81 0.895530 TAGAGGTCTTGGCGAACTGG 59.104 55.000 0.00 0.00 40.61 4.00
81 82 1.376037 GAGGTCTTGGCGAACTGGG 60.376 63.158 0.00 0.00 40.61 4.45
82 83 2.359975 GGTCTTGGCGAACTGGGG 60.360 66.667 0.00 0.00 0.00 4.96
83 84 3.056328 GTCTTGGCGAACTGGGGC 61.056 66.667 0.00 0.00 0.00 5.80
84 85 3.249189 TCTTGGCGAACTGGGGCT 61.249 61.111 0.00 0.00 0.00 5.19
85 86 2.747855 CTTGGCGAACTGGGGCTC 60.748 66.667 0.00 0.00 0.00 4.70
86 87 3.249189 TTGGCGAACTGGGGCTCT 61.249 61.111 0.00 0.00 0.00 4.09
87 88 2.754664 CTTGGCGAACTGGGGCTCTT 62.755 60.000 0.00 0.00 0.00 2.85
88 89 2.034221 GGCGAACTGGGGCTCTTT 59.966 61.111 0.00 0.00 0.00 2.52
89 90 2.335712 GGCGAACTGGGGCTCTTTG 61.336 63.158 0.00 0.00 0.00 2.77
90 91 1.600916 GCGAACTGGGGCTCTTTGT 60.601 57.895 0.00 0.00 0.00 2.83
91 92 1.578206 GCGAACTGGGGCTCTTTGTC 61.578 60.000 0.00 0.00 0.00 3.18
92 93 0.035458 CGAACTGGGGCTCTTTGTCT 59.965 55.000 0.00 0.00 0.00 3.41
93 94 1.275291 CGAACTGGGGCTCTTTGTCTA 59.725 52.381 0.00 0.00 0.00 2.59
94 95 2.289444 CGAACTGGGGCTCTTTGTCTAA 60.289 50.000 0.00 0.00 0.00 2.10
95 96 3.751518 GAACTGGGGCTCTTTGTCTAAA 58.248 45.455 0.00 0.00 0.00 1.85
96 97 4.336280 GAACTGGGGCTCTTTGTCTAAAT 58.664 43.478 0.00 0.00 0.00 1.40
97 98 3.690460 ACTGGGGCTCTTTGTCTAAATG 58.310 45.455 0.00 0.00 0.00 2.32
98 99 3.330701 ACTGGGGCTCTTTGTCTAAATGA 59.669 43.478 0.00 0.00 0.00 2.57
99 100 4.202567 ACTGGGGCTCTTTGTCTAAATGAA 60.203 41.667 0.00 0.00 0.00 2.57
100 101 4.335416 TGGGGCTCTTTGTCTAAATGAAG 58.665 43.478 0.00 0.00 0.00 3.02
101 102 3.696548 GGGGCTCTTTGTCTAAATGAAGG 59.303 47.826 0.00 0.00 0.00 3.46
102 103 3.696548 GGGCTCTTTGTCTAAATGAAGGG 59.303 47.826 0.00 0.00 0.00 3.95
103 104 3.129462 GGCTCTTTGTCTAAATGAAGGGC 59.871 47.826 0.00 0.00 43.22 5.19
104 105 3.758554 GCTCTTTGTCTAAATGAAGGGCA 59.241 43.478 2.19 0.00 43.39 5.36
105 106 4.218417 GCTCTTTGTCTAAATGAAGGGCAA 59.782 41.667 2.19 0.00 43.39 4.52
106 107 5.278957 GCTCTTTGTCTAAATGAAGGGCAAA 60.279 40.000 2.19 0.00 43.39 3.68
107 108 6.331369 TCTTTGTCTAAATGAAGGGCAAAG 57.669 37.500 11.46 11.46 39.02 2.77
108 109 5.833131 TCTTTGTCTAAATGAAGGGCAAAGT 59.167 36.000 15.49 0.00 38.90 2.66
109 110 6.323739 TCTTTGTCTAAATGAAGGGCAAAGTT 59.676 34.615 15.49 0.00 38.90 2.66
110 111 7.504238 TCTTTGTCTAAATGAAGGGCAAAGTTA 59.496 33.333 15.49 0.00 38.90 2.24
111 112 7.589958 TTGTCTAAATGAAGGGCAAAGTTAA 57.410 32.000 0.00 0.00 0.00 2.01
112 113 6.977213 TGTCTAAATGAAGGGCAAAGTTAAC 58.023 36.000 0.00 0.00 0.00 2.01
113 114 6.547880 TGTCTAAATGAAGGGCAAAGTTAACA 59.452 34.615 8.61 0.00 0.00 2.41
114 115 7.232534 TGTCTAAATGAAGGGCAAAGTTAACAT 59.767 33.333 8.61 0.00 0.00 2.71
115 116 7.542130 GTCTAAATGAAGGGCAAAGTTAACATG 59.458 37.037 8.61 7.65 0.00 3.21
116 117 3.658757 TGAAGGGCAAAGTTAACATGC 57.341 42.857 21.57 21.57 39.33 4.06
123 124 3.261580 GCAAAGTTAACATGCCAATCCC 58.738 45.455 19.93 0.00 34.03 3.85
124 125 3.306641 GCAAAGTTAACATGCCAATCCCA 60.307 43.478 19.93 0.00 34.03 4.37
125 126 4.623647 GCAAAGTTAACATGCCAATCCCAT 60.624 41.667 19.93 0.00 34.03 4.00
126 127 5.490159 CAAAGTTAACATGCCAATCCCATT 58.510 37.500 8.61 0.00 0.00 3.16
127 128 5.760484 AAGTTAACATGCCAATCCCATTT 57.240 34.783 8.61 0.00 0.00 2.32
128 129 5.760484 AGTTAACATGCCAATCCCATTTT 57.240 34.783 8.61 0.00 0.00 1.82
129 130 6.125589 AGTTAACATGCCAATCCCATTTTT 57.874 33.333 8.61 0.00 0.00 1.94
130 131 7.251321 AGTTAACATGCCAATCCCATTTTTA 57.749 32.000 8.61 0.00 0.00 1.52
131 132 7.330262 AGTTAACATGCCAATCCCATTTTTAG 58.670 34.615 8.61 0.00 0.00 1.85
132 133 7.180051 AGTTAACATGCCAATCCCATTTTTAGA 59.820 33.333 8.61 0.00 0.00 2.10
133 134 6.371595 AACATGCCAATCCCATTTTTAGAA 57.628 33.333 0.00 0.00 0.00 2.10
134 135 6.564557 ACATGCCAATCCCATTTTTAGAAT 57.435 33.333 0.00 0.00 0.00 2.40
135 136 6.961042 ACATGCCAATCCCATTTTTAGAATT 58.039 32.000 0.00 0.00 0.00 2.17
136 137 6.824704 ACATGCCAATCCCATTTTTAGAATTG 59.175 34.615 0.00 0.00 0.00 2.32
137 138 5.743117 TGCCAATCCCATTTTTAGAATTGG 58.257 37.500 7.41 7.41 40.00 3.16
138 139 5.486775 TGCCAATCCCATTTTTAGAATTGGA 59.513 36.000 14.40 3.22 39.55 3.53
139 140 6.013032 TGCCAATCCCATTTTTAGAATTGGAA 60.013 34.615 14.40 2.67 39.55 3.53
140 141 6.316140 GCCAATCCCATTTTTAGAATTGGAAC 59.684 38.462 14.40 0.00 39.55 3.62
141 142 7.393216 CCAATCCCATTTTTAGAATTGGAACA 58.607 34.615 8.17 0.00 39.55 3.18
158 159 5.995446 TGGAACAAAATTAAAAACAGCCCT 58.005 33.333 0.00 0.00 31.92 5.19
159 160 6.052360 TGGAACAAAATTAAAAACAGCCCTC 58.948 36.000 0.00 0.00 31.92 4.30
160 161 6.126911 TGGAACAAAATTAAAAACAGCCCTCT 60.127 34.615 0.00 0.00 31.92 3.69
161 162 6.765989 GGAACAAAATTAAAAACAGCCCTCTT 59.234 34.615 0.00 0.00 0.00 2.85
162 163 7.254761 GGAACAAAATTAAAAACAGCCCTCTTG 60.255 37.037 0.00 0.00 0.00 3.02
163 164 5.527214 ACAAAATTAAAAACAGCCCTCTTGC 59.473 36.000 0.00 0.00 0.00 4.01
164 165 3.961480 ATTAAAAACAGCCCTCTTGCC 57.039 42.857 0.00 0.00 0.00 4.52
165 166 1.627864 TAAAAACAGCCCTCTTGCCC 58.372 50.000 0.00 0.00 0.00 5.36
166 167 1.121407 AAAAACAGCCCTCTTGCCCC 61.121 55.000 0.00 0.00 0.00 5.80
167 168 3.529835 AAACAGCCCTCTTGCCCCC 62.530 63.158 0.00 0.00 0.00 5.40
169 170 4.120755 CAGCCCTCTTGCCCCCTC 62.121 72.222 0.00 0.00 0.00 4.30
170 171 4.361429 AGCCCTCTTGCCCCCTCT 62.361 66.667 0.00 0.00 0.00 3.69
171 172 3.342477 GCCCTCTTGCCCCCTCTT 61.342 66.667 0.00 0.00 0.00 2.85
172 173 2.923910 GCCCTCTTGCCCCCTCTTT 61.924 63.158 0.00 0.00 0.00 2.52
173 174 1.776969 CCCTCTTGCCCCCTCTTTT 59.223 57.895 0.00 0.00 0.00 2.27
174 175 0.115152 CCCTCTTGCCCCCTCTTTTT 59.885 55.000 0.00 0.00 0.00 1.94
175 176 1.357761 CCCTCTTGCCCCCTCTTTTTA 59.642 52.381 0.00 0.00 0.00 1.52
176 177 2.447443 CCTCTTGCCCCCTCTTTTTAC 58.553 52.381 0.00 0.00 0.00 2.01
177 178 2.225017 CCTCTTGCCCCCTCTTTTTACA 60.225 50.000 0.00 0.00 0.00 2.41
178 179 3.564352 CCTCTTGCCCCCTCTTTTTACAT 60.564 47.826 0.00 0.00 0.00 2.29
179 180 3.430453 TCTTGCCCCCTCTTTTTACATG 58.570 45.455 0.00 0.00 0.00 3.21
180 181 3.075283 TCTTGCCCCCTCTTTTTACATGA 59.925 43.478 0.00 0.00 0.00 3.07
181 182 3.085952 TGCCCCCTCTTTTTACATGAG 57.914 47.619 0.00 0.00 0.00 2.90
182 183 2.647299 TGCCCCCTCTTTTTACATGAGA 59.353 45.455 0.00 0.00 0.00 3.27
183 184 3.282885 GCCCCCTCTTTTTACATGAGAG 58.717 50.000 0.00 0.00 37.30 3.20
192 193 8.485976 CTCTTTTTACATGAGAGGTAAGAAGG 57.514 38.462 0.00 4.12 40.52 3.46
193 194 7.974504 TCTTTTTACATGAGAGGTAAGAAGGT 58.025 34.615 0.00 0.00 40.52 3.50
194 195 9.096823 TCTTTTTACATGAGAGGTAAGAAGGTA 57.903 33.333 0.00 0.00 40.52 3.08
195 196 9.720769 CTTTTTACATGAGAGGTAAGAAGGTAA 57.279 33.333 0.00 0.00 38.37 2.85
196 197 9.720769 TTTTTACATGAGAGGTAAGAAGGTAAG 57.279 33.333 0.00 0.00 32.76 2.34
197 198 8.660295 TTTACATGAGAGGTAAGAAGGTAAGA 57.340 34.615 0.00 0.00 32.76 2.10
198 199 6.783708 ACATGAGAGGTAAGAAGGTAAGAG 57.216 41.667 0.00 0.00 0.00 2.85
199 200 6.257586 ACATGAGAGGTAAGAAGGTAAGAGT 58.742 40.000 0.00 0.00 0.00 3.24
200 201 6.726764 ACATGAGAGGTAAGAAGGTAAGAGTT 59.273 38.462 0.00 0.00 0.00 3.01
201 202 7.894364 ACATGAGAGGTAAGAAGGTAAGAGTTA 59.106 37.037 0.00 0.00 0.00 2.24
202 203 7.941431 TGAGAGGTAAGAAGGTAAGAGTTAG 57.059 40.000 0.00 0.00 0.00 2.34
203 204 7.468496 TGAGAGGTAAGAAGGTAAGAGTTAGT 58.532 38.462 0.00 0.00 0.00 2.24
204 205 7.949006 TGAGAGGTAAGAAGGTAAGAGTTAGTT 59.051 37.037 0.00 0.00 0.00 2.24
205 206 9.460019 GAGAGGTAAGAAGGTAAGAGTTAGTTA 57.540 37.037 0.00 0.00 0.00 2.24
206 207 9.465199 AGAGGTAAGAAGGTAAGAGTTAGTTAG 57.535 37.037 0.00 0.00 0.00 2.34
207 208 9.460019 GAGGTAAGAAGGTAAGAGTTAGTTAGA 57.540 37.037 0.00 0.00 0.00 2.10
208 209 9.241919 AGGTAAGAAGGTAAGAGTTAGTTAGAC 57.758 37.037 0.00 0.00 0.00 2.59
209 210 8.465999 GGTAAGAAGGTAAGAGTTAGTTAGACC 58.534 40.741 0.00 0.00 0.00 3.85
210 211 7.479352 AAGAAGGTAAGAGTTAGTTAGACCC 57.521 40.000 0.00 0.00 0.00 4.46
211 212 6.559429 AGAAGGTAAGAGTTAGTTAGACCCA 58.441 40.000 0.00 0.00 0.00 4.51
212 213 6.436847 AGAAGGTAAGAGTTAGTTAGACCCAC 59.563 42.308 0.00 0.00 0.00 4.61
213 214 5.901598 AGGTAAGAGTTAGTTAGACCCACT 58.098 41.667 0.00 0.00 0.00 4.00
214 215 7.037342 AGGTAAGAGTTAGTTAGACCCACTA 57.963 40.000 0.00 0.00 0.00 2.74
215 216 6.889177 AGGTAAGAGTTAGTTAGACCCACTAC 59.111 42.308 0.00 0.00 0.00 2.73
216 217 6.889177 GGTAAGAGTTAGTTAGACCCACTACT 59.111 42.308 0.00 0.00 0.00 2.57
217 218 7.395772 GGTAAGAGTTAGTTAGACCCACTACTT 59.604 40.741 0.00 0.00 0.00 2.24
218 219 7.852550 AAGAGTTAGTTAGACCCACTACTTT 57.147 36.000 0.00 0.00 0.00 2.66
219 220 8.946797 AAGAGTTAGTTAGACCCACTACTTTA 57.053 34.615 0.00 0.00 0.00 1.85
220 221 8.946797 AGAGTTAGTTAGACCCACTACTTTAA 57.053 34.615 0.00 0.00 0.00 1.52
221 222 9.372189 AGAGTTAGTTAGACCCACTACTTTAAA 57.628 33.333 0.00 0.00 0.00 1.52
222 223 9.987272 GAGTTAGTTAGACCCACTACTTTAAAA 57.013 33.333 0.00 0.00 0.00 1.52
295 296 5.368523 TGAAAAGAAGAGGTAAGAGGGAACA 59.631 40.000 0.00 0.00 0.00 3.18
324 325 1.617850 AGGCATGAGAGCTCCTAATCG 59.382 52.381 10.93 0.00 34.17 3.34
333 334 1.757699 AGCTCCTAATCGTCACCCTTC 59.242 52.381 0.00 0.00 0.00 3.46
346 347 2.047655 CCTTCGCGCCAGTTACCA 60.048 61.111 0.00 0.00 0.00 3.25
378 379 1.985116 ACGTCCTTCTCTCCTGGGC 60.985 63.158 0.00 0.00 0.00 5.36
381 382 2.364317 CCTTCTCTCCTGGGCCGA 60.364 66.667 0.00 0.00 0.00 5.54
437 442 1.466167 CTTCACTCAATCAGCGGTTGG 59.534 52.381 2.51 0.00 0.00 3.77
455 462 0.942252 GGCTCGACCGTTGACTTTTT 59.058 50.000 0.00 0.00 0.00 1.94
619 626 9.741647 GAATGATCATGATTTTAGGAAAAGGTC 57.258 33.333 9.46 0.00 33.22 3.85
620 627 9.484806 AATGATCATGATTTTAGGAAAAGGTCT 57.515 29.630 9.46 0.00 33.22 3.85
621 628 8.511604 TGATCATGATTTTAGGAAAAGGTCTC 57.488 34.615 10.14 0.00 33.22 3.36
622 629 8.108999 TGATCATGATTTTAGGAAAAGGTCTCA 58.891 33.333 10.14 0.00 33.22 3.27
623 630 9.129532 GATCATGATTTTAGGAAAAGGTCTCAT 57.870 33.333 10.14 0.00 33.22 2.90
624 631 8.284945 TCATGATTTTAGGAAAAGGTCTCATG 57.715 34.615 14.29 14.29 33.22 3.07
625 632 8.108999 TCATGATTTTAGGAAAAGGTCTCATGA 58.891 33.333 16.94 16.94 33.22 3.07
626 633 8.742777 CATGATTTTAGGAAAAGGTCTCATGAA 58.257 33.333 14.87 0.00 33.22 2.57
627 634 8.884124 TGATTTTAGGAAAAGGTCTCATGAAT 57.116 30.769 0.00 0.00 33.22 2.57
628 635 9.312904 TGATTTTAGGAAAAGGTCTCATGAATT 57.687 29.630 0.00 0.00 33.22 2.17
800 808 9.857957 AAAGGTTTACGAACATGAAAAAGTTTA 57.142 25.926 0.00 0.00 37.51 2.01
864 874 1.036707 CAAAAGAAAACCGGCCTGGA 58.963 50.000 18.74 0.00 42.00 3.86
865 875 1.410882 CAAAAGAAAACCGGCCTGGAA 59.589 47.619 18.74 0.00 42.00 3.53
866 876 1.328279 AAAGAAAACCGGCCTGGAAG 58.672 50.000 18.74 0.00 42.00 3.46
867 877 0.476771 AAGAAAACCGGCCTGGAAGA 59.523 50.000 18.74 0.00 42.00 2.87
868 878 0.698818 AGAAAACCGGCCTGGAAGAT 59.301 50.000 18.74 3.83 42.00 2.40
869 879 1.075536 AGAAAACCGGCCTGGAAGATT 59.924 47.619 18.74 8.50 42.00 2.40
870 880 1.893137 GAAAACCGGCCTGGAAGATTT 59.107 47.619 18.74 13.08 42.00 2.17
871 881 1.545841 AAACCGGCCTGGAAGATTTC 58.454 50.000 18.74 0.00 42.00 2.17
907 917 1.077068 TTGCTGGGCCCGAATAAGG 60.077 57.895 19.37 1.92 0.00 2.69
931 941 2.197324 TTGCCTTGACACCCCCAC 59.803 61.111 0.00 0.00 0.00 4.61
932 942 2.694920 TTGCCTTGACACCCCCACA 61.695 57.895 0.00 0.00 0.00 4.17
933 943 2.282462 GCCTTGACACCCCCACAG 60.282 66.667 0.00 0.00 0.00 3.66
934 944 2.436109 CCTTGACACCCCCACAGG 59.564 66.667 0.00 0.00 0.00 4.00
935 945 2.282462 CTTGACACCCCCACAGGC 60.282 66.667 0.00 0.00 0.00 4.85
936 946 3.868200 CTTGACACCCCCACAGGCC 62.868 68.421 0.00 0.00 0.00 5.19
972 982 1.943340 CGAGCCCTTATTCTTCTTGCC 59.057 52.381 0.00 0.00 0.00 4.52
973 983 2.420687 CGAGCCCTTATTCTTCTTGCCT 60.421 50.000 0.00 0.00 0.00 4.75
974 984 2.948315 GAGCCCTTATTCTTCTTGCCTG 59.052 50.000 0.00 0.00 0.00 4.85
975 985 2.027385 GCCCTTATTCTTCTTGCCTGG 58.973 52.381 0.00 0.00 0.00 4.45
1113 1123 1.465188 ATCCTTCACCCACACCCCA 60.465 57.895 0.00 0.00 0.00 4.96
1228 1238 1.915078 CTCGGCCACAGGGGATTCTT 61.915 60.000 2.24 0.00 40.01 2.52
1285 1295 6.014413 GGATAGACCTTTCCTACCCAGTTATC 60.014 46.154 0.13 0.00 35.41 1.75
1291 1301 6.068021 ACCTTTCCTACCCAGTTATCTACCTA 60.068 42.308 0.00 0.00 0.00 3.08
1323 1333 9.730705 AGATTTTACTGATTCTGTTGAAGATGA 57.269 29.630 1.28 0.00 35.44 2.92
1338 1360 6.769134 TGAAGATGAATGATGTGCTGAATT 57.231 33.333 0.00 0.00 0.00 2.17
1345 1367 5.186215 TGAATGATGTGCTGAATTGGAATGT 59.814 36.000 0.00 0.00 0.00 2.71
1367 1389 9.747898 AATGTAGACTAGGGTTGAGATATAGAG 57.252 37.037 0.00 0.00 0.00 2.43
1481 1503 4.155462 ACATCATGCTGAAGCTTGTAACTG 59.845 41.667 2.10 11.77 43.88 3.16
1608 1634 9.933723 TGGTATACTTTGTCTTACCTTCTTTAC 57.066 33.333 2.25 0.00 36.02 2.01
1634 1995 3.638080 ATGCAATTTATTTTGTGCGCG 57.362 38.095 0.00 0.00 39.92 6.86
1647 2008 0.861837 GTGCGCGATTGGAGATTAGG 59.138 55.000 12.10 0.00 0.00 2.69
1655 2018 5.107065 CGCGATTGGAGATTAGGGATTTAAC 60.107 44.000 0.00 0.00 0.00 2.01
1658 2021 6.992715 CGATTGGAGATTAGGGATTTAACTGT 59.007 38.462 0.00 0.00 0.00 3.55
1659 2022 7.041780 CGATTGGAGATTAGGGATTTAACTGTG 60.042 40.741 0.00 0.00 0.00 3.66
1685 2048 8.328864 GGATTAGCTTTACTAAGTGATTCAACG 58.671 37.037 0.00 0.00 44.02 4.10
1722 2085 2.484264 CCCTTTGGAAGAAGCTTGTACG 59.516 50.000 2.10 0.00 0.00 3.67
1727 2090 3.932822 TGGAAGAAGCTTGTACGCAATA 58.067 40.909 2.10 0.00 33.65 1.90
1737 2100 6.288294 AGCTTGTACGCAATAAGGATGATTA 58.712 36.000 0.00 0.00 33.65 1.75
1997 2360 5.424121 ACTGTGTAGTGAAGAAAATGTGC 57.576 39.130 0.00 0.00 35.34 4.57
2069 2432 4.324402 GCAATGACCTTTATGCTGTTTTCG 59.676 41.667 0.00 0.00 35.93 3.46
2077 2440 7.081976 ACCTTTATGCTGTTTTCGTATCAAAC 58.918 34.615 0.00 0.00 35.11 2.93
2098 2461 5.438761 ACGAGGAAAAGAAGGTGATTTTG 57.561 39.130 0.00 0.00 0.00 2.44
2162 2525 6.940298 TGTATTACTTGCTTTTGTTAGCTCCT 59.060 34.615 0.00 0.00 41.76 3.69
2190 2553 3.686016 AGTTCGTTGTGCATTTATCCCT 58.314 40.909 0.00 0.00 0.00 4.20
2373 2744 9.964303 CTATAGCTTGGTATTATGATAGAGCTG 57.036 37.037 14.92 2.15 0.00 4.24
2610 2982 3.118592 AGACATGGTTACTAGCCAAGAGC 60.119 47.826 0.00 0.00 39.72 4.09
2620 2992 2.315246 GCCAAGAGCTGCCTAATCG 58.685 57.895 0.00 0.00 38.99 3.34
2621 2993 1.162800 GCCAAGAGCTGCCTAATCGG 61.163 60.000 0.00 0.00 38.99 4.18
2638 3010 7.383687 CCTAATCGGCTAATCTATTTGTGGTA 58.616 38.462 0.00 0.00 0.00 3.25
2640 3012 5.864418 TCGGCTAATCTATTTGTGGTAGT 57.136 39.130 0.00 0.00 0.00 2.73
2737 3481 7.823149 GAGAATCTGGATTTTGTTTTCATGG 57.177 36.000 0.00 0.00 0.00 3.66
2746 3490 2.765689 TGTTTTCATGGGTGGGTTCT 57.234 45.000 0.00 0.00 0.00 3.01
2751 3501 4.681074 TTTCATGGGTGGGTTCTTTTTC 57.319 40.909 0.00 0.00 0.00 2.29
2752 3502 3.611025 TCATGGGTGGGTTCTTTTTCT 57.389 42.857 0.00 0.00 0.00 2.52
2763 3513 8.094548 GGTGGGTTCTTTTTCTTTATGCTTTAT 58.905 33.333 0.00 0.00 0.00 1.40
2764 3514 9.489084 GTGGGTTCTTTTTCTTTATGCTTTATT 57.511 29.630 0.00 0.00 0.00 1.40
2765 3515 9.487790 TGGGTTCTTTTTCTTTATGCTTTATTG 57.512 29.630 0.00 0.00 0.00 1.90
2834 3585 7.911651 ACATTAGGGAGATTATGTGATCGATT 58.088 34.615 0.00 0.00 30.51 3.34
3055 3807 2.571653 CCTTGTCCATTCCTCCAGTACA 59.428 50.000 0.00 0.00 0.00 2.90
3205 3957 6.617782 ATGTGTCAATCTCCTCATATAGGG 57.382 41.667 0.00 0.00 46.55 3.53
3286 4038 1.980765 TGATGGAGGACATGATAGCCC 59.019 52.381 0.00 0.00 40.72 5.19
3287 4039 1.980765 GATGGAGGACATGATAGCCCA 59.019 52.381 0.00 0.20 40.72 5.36
3312 4064 9.203421 CATGTTAGTTACACTGACACAAGATAA 57.797 33.333 3.82 0.00 45.50 1.75
3316 4068 9.772973 TTAGTTACACTGACACAAGATAATGTT 57.227 29.630 0.00 0.00 0.00 2.71
3386 4720 5.659525 TCTCCGTGTAAATCTCAATAGGGAA 59.340 40.000 0.00 0.00 0.00 3.97
3387 4721 6.326583 TCTCCGTGTAAATCTCAATAGGGAAT 59.673 38.462 0.00 0.00 0.00 3.01
3388 4722 7.507956 TCTCCGTGTAAATCTCAATAGGGAATA 59.492 37.037 0.00 0.00 0.00 1.75
3389 4723 7.667557 TCCGTGTAAATCTCAATAGGGAATAG 58.332 38.462 0.00 0.00 0.00 1.73
3390 4724 6.874134 CCGTGTAAATCTCAATAGGGAATAGG 59.126 42.308 0.00 0.00 0.00 2.57
3391 4725 6.874134 CGTGTAAATCTCAATAGGGAATAGGG 59.126 42.308 0.00 0.00 0.00 3.53
3392 4726 7.256190 CGTGTAAATCTCAATAGGGAATAGGGA 60.256 40.741 0.00 0.00 0.00 4.20
3449 4783 3.643792 TGATAGTTTGTTTTGGGGGTTGG 59.356 43.478 0.00 0.00 0.00 3.77
3456 4790 3.115390 TGTTTTGGGGGTTGGAAATCAA 58.885 40.909 0.00 0.00 0.00 2.57
3512 4846 0.245539 CCGTGTAGTTCATGGTCCGT 59.754 55.000 0.00 0.00 45.46 4.69
3544 4878 4.599047 GATCATTTGCATCAGACAGAAGC 58.401 43.478 0.00 0.00 41.21 3.86
3560 4894 1.434513 AAGCCACATGAAGGACCCCA 61.435 55.000 12.18 0.00 0.00 4.96
3678 5012 4.021981 TGCACCATCATATTCTCCTAGTCG 60.022 45.833 0.00 0.00 0.00 4.18
3683 5017 6.153067 CCATCATATTCTCCTAGTCGTCAAC 58.847 44.000 0.00 0.00 0.00 3.18
3704 5038 2.951229 AGTTCCCGGAACAATCAGTT 57.049 45.000 28.25 6.61 44.11 3.16
3724 5058 8.121305 TCAGTTGTGCATAGGAAATTTACATT 57.879 30.769 2.58 0.00 0.00 2.71
3748 5093 5.790593 TCTAGACACACAATGGGAAGTTAC 58.209 41.667 0.00 0.00 0.00 2.50
3758 5103 7.176690 ACACAATGGGAAGTTACTAGAAATTGG 59.823 37.037 0.00 6.66 0.00 3.16
3793 5139 8.682710 TCTGTAGTATGTTGAATTTTTATGGCC 58.317 33.333 0.00 0.00 0.00 5.36
3840 5186 7.823745 AGTTTGGAACACATTTACTCATTCT 57.176 32.000 0.00 0.00 39.29 2.40
3866 5212 4.177537 TCCAACCTGTTTCAGATGGAAA 57.822 40.909 16.08 0.00 41.07 3.13
3891 5237 6.823689 ACACCAATAACCTGAATGAGTACATC 59.176 38.462 0.00 0.00 35.50 3.06
3895 5241 1.202417 ACCTGAATGAGTACATCGCCG 60.202 52.381 0.00 0.00 35.50 6.46
3947 5293 7.170998 GGAAAGTATGGTTAATGATGTCTACCG 59.829 40.741 0.00 0.00 0.00 4.02
3988 5334 2.663852 ACGAAACGTTGCTCCCCG 60.664 61.111 0.00 1.92 36.35 5.73
3990 5336 1.373246 CGAAACGTTGCTCCCCGTA 60.373 57.895 0.00 0.00 36.04 4.02
4106 5476 6.038825 AGTGAGATCTTATGAACCAGACGTAG 59.961 42.308 0.00 0.00 0.00 3.51
4162 5532 3.419915 CGCTTGTCTAATGATGTTGTGC 58.580 45.455 0.00 0.00 0.00 4.57
4251 5628 6.594937 ACTGTTTTGTCAGCATTGTTTTGATT 59.405 30.769 0.00 0.00 38.84 2.57
4256 5633 6.389830 TGTCAGCATTGTTTTGATTACTGT 57.610 33.333 0.00 0.00 0.00 3.55
4257 5634 6.207928 TGTCAGCATTGTTTTGATTACTGTG 58.792 36.000 0.00 0.00 0.00 3.66
4286 5663 7.451731 TCAAGGATCCATATCTACCAAACTT 57.548 36.000 15.82 0.00 32.29 2.66
4335 5774 0.729140 CTGGTTGATTGCGCCGTTTC 60.729 55.000 4.18 0.00 0.00 2.78
4340 5779 3.250040 GGTTGATTGCGCCGTTTCTATAT 59.750 43.478 4.18 0.00 0.00 0.86
4341 5780 4.449743 GGTTGATTGCGCCGTTTCTATATA 59.550 41.667 4.18 0.00 0.00 0.86
4382 5823 6.959639 AAAAACTCTTGGTGCTCTGAATAA 57.040 33.333 0.00 0.00 0.00 1.40
4452 5895 8.821894 GCTCTTCTAACAACCAGAATAATACTG 58.178 37.037 0.00 0.00 31.82 2.74
4560 6003 3.129502 CACATCACGCCAGGCAGG 61.130 66.667 13.30 2.11 41.84 4.85
4638 6081 2.240500 GCGACTCATGGATCACGGC 61.241 63.158 0.00 0.00 0.00 5.68
4674 6117 2.234661 TCACAGAATTGCGAGGACATCT 59.765 45.455 0.00 0.00 0.00 2.90
4675 6118 3.005554 CACAGAATTGCGAGGACATCTT 58.994 45.455 0.00 0.00 0.00 2.40
4712 6155 3.821306 GGGGCAATAATTCCCGTCT 57.179 52.632 0.00 0.00 43.55 4.18
4713 6156 2.943036 GGGGCAATAATTCCCGTCTA 57.057 50.000 0.00 0.00 43.55 2.59
4714 6157 3.217681 GGGGCAATAATTCCCGTCTAA 57.782 47.619 0.00 0.00 43.55 2.10
4715 6158 3.558033 GGGGCAATAATTCCCGTCTAAA 58.442 45.455 0.00 0.00 43.55 1.85
4763 6206 1.109920 ACTCAGTGGCTCACTCACGT 61.110 55.000 5.02 0.00 43.43 4.49
4780 6223 1.790623 ACGTCTTGATTGTACGCACAC 59.209 47.619 0.00 0.00 40.18 3.82
4857 6307 1.091771 CATGGAGCCAGCTACAACGG 61.092 60.000 8.98 0.00 40.73 4.44
4884 6334 8.583810 ACAAAATTTCAGACATGACAAGAATG 57.416 30.769 0.00 0.73 34.35 2.67
4924 6374 3.472283 TTGCCGTTTGGTCACTACTAA 57.528 42.857 0.00 0.00 37.67 2.24
4929 6379 4.569564 GCCGTTTGGTCACTACTAATAAGG 59.430 45.833 0.00 0.00 37.67 2.69
4932 6382 6.652062 CCGTTTGGTCACTACTAATAAGGTTT 59.348 38.462 0.00 0.00 0.00 3.27
4933 6383 7.818930 CCGTTTGGTCACTACTAATAAGGTTTA 59.181 37.037 0.00 0.00 0.00 2.01
4962 6412 9.643693 AAAGTGTCATATGATGGAATTTTTCAC 57.356 29.630 9.02 8.00 0.00 3.18
4974 6425 6.706295 TGGAATTTTTCACTTTCCAGTTTGT 58.294 32.000 0.00 0.00 42.96 2.83
5006 6457 9.151471 TCGATAAAAGAGACCTTGTCATAAAAG 57.849 33.333 0.00 0.00 34.60 2.27
5013 6464 3.372440 CCTTGTCATAAAAGGGGAGCT 57.628 47.619 0.00 0.00 40.54 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.924090 CTTGCGTCTTCGGCAGATAC 59.076 55.000 0.00 0.00 37.56 2.24
1 2 0.530744 ACTTGCGTCTTCGGCAGATA 59.469 50.000 0.00 0.00 37.56 1.98
2 3 0.530744 TACTTGCGTCTTCGGCAGAT 59.469 50.000 0.00 0.00 37.56 2.90
3 4 0.109272 CTACTTGCGTCTTCGGCAGA 60.109 55.000 0.00 0.00 37.56 4.26
4 5 1.687494 GCTACTTGCGTCTTCGGCAG 61.687 60.000 0.00 0.00 37.56 4.85
5 6 1.736645 GCTACTTGCGTCTTCGGCA 60.737 57.895 0.00 0.00 37.56 5.69
6 7 2.453638 GGCTACTTGCGTCTTCGGC 61.454 63.158 0.00 0.00 44.05 5.54
7 8 1.810030 GGGCTACTTGCGTCTTCGG 60.810 63.158 0.00 0.00 44.05 4.30
8 9 0.669318 TTGGGCTACTTGCGTCTTCG 60.669 55.000 0.00 0.00 44.05 3.79
9 10 0.796927 GTTGGGCTACTTGCGTCTTC 59.203 55.000 0.00 0.00 44.05 2.87
10 11 0.949105 CGTTGGGCTACTTGCGTCTT 60.949 55.000 0.00 0.00 44.05 3.01
11 12 1.374252 CGTTGGGCTACTTGCGTCT 60.374 57.895 0.00 0.00 44.05 4.18
12 13 1.373748 TCGTTGGGCTACTTGCGTC 60.374 57.895 0.00 0.00 44.05 5.19
13 14 1.666872 GTCGTTGGGCTACTTGCGT 60.667 57.895 0.00 0.00 44.05 5.24
14 15 1.626654 CTGTCGTTGGGCTACTTGCG 61.627 60.000 0.00 0.00 44.05 4.85
15 16 0.320421 TCTGTCGTTGGGCTACTTGC 60.320 55.000 0.00 0.00 41.94 4.01
16 17 1.000955 AGTCTGTCGTTGGGCTACTTG 59.999 52.381 0.00 0.00 0.00 3.16
17 18 1.339097 AGTCTGTCGTTGGGCTACTT 58.661 50.000 0.00 0.00 0.00 2.24
18 19 1.000955 CAAGTCTGTCGTTGGGCTACT 59.999 52.381 0.00 0.00 0.00 2.57
19 20 1.270147 ACAAGTCTGTCGTTGGGCTAC 60.270 52.381 0.00 0.00 0.00 3.58
20 21 1.045407 ACAAGTCTGTCGTTGGGCTA 58.955 50.000 0.00 0.00 0.00 3.93
21 22 0.532862 CACAAGTCTGTCGTTGGGCT 60.533 55.000 0.00 0.00 31.64 5.19
22 23 0.814010 ACACAAGTCTGTCGTTGGGC 60.814 55.000 0.00 0.00 31.64 5.36
23 24 0.937304 CACACAAGTCTGTCGTTGGG 59.063 55.000 0.00 0.00 31.64 4.12
24 25 0.937304 CCACACAAGTCTGTCGTTGG 59.063 55.000 0.00 0.00 31.64 3.77
25 26 1.860950 CTCCACACAAGTCTGTCGTTG 59.139 52.381 0.00 0.00 31.64 4.10
26 27 1.480954 ACTCCACACAAGTCTGTCGTT 59.519 47.619 0.00 0.00 31.64 3.85
27 28 1.112113 ACTCCACACAAGTCTGTCGT 58.888 50.000 0.00 0.00 31.64 4.34
28 29 1.860950 CAACTCCACACAAGTCTGTCG 59.139 52.381 0.00 0.00 31.64 4.35
29 30 3.179443 TCAACTCCACACAAGTCTGTC 57.821 47.619 0.00 0.00 31.64 3.51
30 31 3.627395 TTCAACTCCACACAAGTCTGT 57.373 42.857 0.00 0.00 35.63 3.41
31 32 4.024556 GTCATTCAACTCCACACAAGTCTG 60.025 45.833 0.00 0.00 0.00 3.51
32 33 4.130118 GTCATTCAACTCCACACAAGTCT 58.870 43.478 0.00 0.00 0.00 3.24
33 34 3.876914 TGTCATTCAACTCCACACAAGTC 59.123 43.478 0.00 0.00 0.00 3.01
34 35 3.884895 TGTCATTCAACTCCACACAAGT 58.115 40.909 0.00 0.00 0.00 3.16
35 36 4.898829 TTGTCATTCAACTCCACACAAG 57.101 40.909 0.00 0.00 0.00 3.16
46 47 2.288579 ACCTCTACGCGTTGTCATTCAA 60.289 45.455 20.78 0.00 0.00 2.69
47 48 1.271379 ACCTCTACGCGTTGTCATTCA 59.729 47.619 20.78 0.00 0.00 2.57
48 49 1.918609 GACCTCTACGCGTTGTCATTC 59.081 52.381 20.78 7.76 0.00 2.67
49 50 1.544691 AGACCTCTACGCGTTGTCATT 59.455 47.619 20.78 1.55 0.00 2.57
50 51 1.174783 AGACCTCTACGCGTTGTCAT 58.825 50.000 20.78 4.97 0.00 3.06
51 52 0.956633 AAGACCTCTACGCGTTGTCA 59.043 50.000 20.78 0.00 0.00 3.58
52 53 1.337821 CAAGACCTCTACGCGTTGTC 58.662 55.000 20.78 18.67 0.00 3.18
53 54 0.038526 CCAAGACCTCTACGCGTTGT 60.039 55.000 20.78 10.30 0.00 3.32
54 55 1.352156 GCCAAGACCTCTACGCGTTG 61.352 60.000 20.78 17.33 0.00 4.10
55 56 1.080025 GCCAAGACCTCTACGCGTT 60.080 57.895 20.78 0.00 0.00 4.84
56 57 2.572284 GCCAAGACCTCTACGCGT 59.428 61.111 19.17 19.17 0.00 6.01
57 58 2.537792 TTCGCCAAGACCTCTACGCG 62.538 60.000 3.53 3.53 41.84 6.01
58 59 1.077089 GTTCGCCAAGACCTCTACGC 61.077 60.000 0.00 0.00 0.00 4.42
59 60 0.526662 AGTTCGCCAAGACCTCTACG 59.473 55.000 0.00 0.00 0.00 3.51
60 61 1.404315 CCAGTTCGCCAAGACCTCTAC 60.404 57.143 0.00 0.00 0.00 2.59
61 62 0.895530 CCAGTTCGCCAAGACCTCTA 59.104 55.000 0.00 0.00 0.00 2.43
62 63 1.674057 CCAGTTCGCCAAGACCTCT 59.326 57.895 0.00 0.00 0.00 3.69
63 64 1.376037 CCCAGTTCGCCAAGACCTC 60.376 63.158 0.00 0.00 0.00 3.85
64 65 2.750350 CCCAGTTCGCCAAGACCT 59.250 61.111 0.00 0.00 0.00 3.85
65 66 2.359975 CCCCAGTTCGCCAAGACC 60.360 66.667 0.00 0.00 0.00 3.85
66 67 3.056328 GCCCCAGTTCGCCAAGAC 61.056 66.667 0.00 0.00 0.00 3.01
67 68 3.249189 AGCCCCAGTTCGCCAAGA 61.249 61.111 0.00 0.00 0.00 3.02
68 69 2.747855 GAGCCCCAGTTCGCCAAG 60.748 66.667 0.00 0.00 0.00 3.61
69 70 2.351924 AAAGAGCCCCAGTTCGCCAA 62.352 55.000 0.00 0.00 0.00 4.52
70 71 2.829384 AAAGAGCCCCAGTTCGCCA 61.829 57.895 0.00 0.00 0.00 5.69
71 72 2.034221 AAAGAGCCCCAGTTCGCC 59.966 61.111 0.00 0.00 0.00 5.54
72 73 1.578206 GACAAAGAGCCCCAGTTCGC 61.578 60.000 0.00 0.00 0.00 4.70
73 74 0.035458 AGACAAAGAGCCCCAGTTCG 59.965 55.000 0.00 0.00 0.00 3.95
74 75 3.418684 TTAGACAAAGAGCCCCAGTTC 57.581 47.619 0.00 0.00 0.00 3.01
75 76 3.876309 TTTAGACAAAGAGCCCCAGTT 57.124 42.857 0.00 0.00 0.00 3.16
76 77 3.330701 TCATTTAGACAAAGAGCCCCAGT 59.669 43.478 0.00 0.00 0.00 4.00
77 78 3.955471 TCATTTAGACAAAGAGCCCCAG 58.045 45.455 0.00 0.00 0.00 4.45
78 79 4.335416 CTTCATTTAGACAAAGAGCCCCA 58.665 43.478 0.00 0.00 0.00 4.96
79 80 3.696548 CCTTCATTTAGACAAAGAGCCCC 59.303 47.826 0.00 0.00 0.00 5.80
80 81 3.696548 CCCTTCATTTAGACAAAGAGCCC 59.303 47.826 0.00 0.00 0.00 5.19
81 82 3.129462 GCCCTTCATTTAGACAAAGAGCC 59.871 47.826 0.00 0.00 0.00 4.70
82 83 3.758554 TGCCCTTCATTTAGACAAAGAGC 59.241 43.478 0.00 0.00 0.00 4.09
83 84 5.964958 TTGCCCTTCATTTAGACAAAGAG 57.035 39.130 0.00 0.00 0.00 2.85
84 85 5.833131 ACTTTGCCCTTCATTTAGACAAAGA 59.167 36.000 16.79 0.00 39.20 2.52
85 86 6.089249 ACTTTGCCCTTCATTTAGACAAAG 57.911 37.500 10.17 10.17 40.75 2.77
86 87 6.478512 AACTTTGCCCTTCATTTAGACAAA 57.521 33.333 0.00 0.00 0.00 2.83
87 88 7.068839 TGTTAACTTTGCCCTTCATTTAGACAA 59.931 33.333 7.22 0.00 0.00 3.18
88 89 6.547880 TGTTAACTTTGCCCTTCATTTAGACA 59.452 34.615 7.22 0.00 0.00 3.41
89 90 6.977213 TGTTAACTTTGCCCTTCATTTAGAC 58.023 36.000 7.22 0.00 0.00 2.59
90 91 7.601856 CATGTTAACTTTGCCCTTCATTTAGA 58.398 34.615 7.22 0.00 0.00 2.10
91 92 6.311200 GCATGTTAACTTTGCCCTTCATTTAG 59.689 38.462 17.94 0.00 0.00 1.85
92 93 6.162777 GCATGTTAACTTTGCCCTTCATTTA 58.837 36.000 17.94 0.00 0.00 1.40
93 94 4.996758 GCATGTTAACTTTGCCCTTCATTT 59.003 37.500 17.94 0.00 0.00 2.32
94 95 4.568956 GCATGTTAACTTTGCCCTTCATT 58.431 39.130 17.94 0.00 0.00 2.57
95 96 4.192429 GCATGTTAACTTTGCCCTTCAT 57.808 40.909 17.94 0.00 0.00 2.57
96 97 3.658757 GCATGTTAACTTTGCCCTTCA 57.341 42.857 17.94 0.00 0.00 3.02
102 103 3.261580 GGGATTGGCATGTTAACTTTGC 58.738 45.455 19.57 19.57 35.64 3.68
103 104 4.533919 TGGGATTGGCATGTTAACTTTG 57.466 40.909 7.22 6.01 0.00 2.77
104 105 5.760484 AATGGGATTGGCATGTTAACTTT 57.240 34.783 7.22 0.00 0.00 2.66
105 106 5.760484 AAATGGGATTGGCATGTTAACTT 57.240 34.783 7.22 0.00 0.00 2.66
106 107 5.760484 AAAATGGGATTGGCATGTTAACT 57.240 34.783 7.22 0.00 0.00 2.24
107 108 7.327214 TCTAAAAATGGGATTGGCATGTTAAC 58.673 34.615 0.00 0.00 0.00 2.01
108 109 7.487822 TCTAAAAATGGGATTGGCATGTTAA 57.512 32.000 0.00 0.00 0.00 2.01
109 110 7.487822 TTCTAAAAATGGGATTGGCATGTTA 57.512 32.000 0.00 0.00 0.00 2.41
110 111 6.371595 TTCTAAAAATGGGATTGGCATGTT 57.628 33.333 0.00 0.00 0.00 2.71
111 112 6.564557 ATTCTAAAAATGGGATTGGCATGT 57.435 33.333 0.00 0.00 0.00 3.21
112 113 6.261381 CCAATTCTAAAAATGGGATTGGCATG 59.739 38.462 0.01 0.00 32.59 4.06
113 114 6.158344 TCCAATTCTAAAAATGGGATTGGCAT 59.842 34.615 7.22 0.00 36.29 4.40
114 115 5.486775 TCCAATTCTAAAAATGGGATTGGCA 59.513 36.000 7.22 0.00 36.29 4.92
115 116 5.988287 TCCAATTCTAAAAATGGGATTGGC 58.012 37.500 7.22 0.00 36.29 4.52
116 117 7.393216 TGTTCCAATTCTAAAAATGGGATTGG 58.607 34.615 6.02 6.02 36.29 3.16
117 118 8.845413 TTGTTCCAATTCTAAAAATGGGATTG 57.155 30.769 0.00 0.00 36.29 2.67
118 119 9.859152 TTTTGTTCCAATTCTAAAAATGGGATT 57.141 25.926 0.00 0.00 36.29 3.01
120 121 9.859152 AATTTTGTTCCAATTCTAAAAATGGGA 57.141 25.926 0.00 0.00 36.29 4.37
130 131 8.620416 GGCTGTTTTTAATTTTGTTCCAATTCT 58.380 29.630 0.00 0.00 0.00 2.40
131 132 7.860373 GGGCTGTTTTTAATTTTGTTCCAATTC 59.140 33.333 0.00 0.00 0.00 2.17
132 133 7.559533 AGGGCTGTTTTTAATTTTGTTCCAATT 59.440 29.630 0.00 0.00 0.00 2.32
133 134 7.059788 AGGGCTGTTTTTAATTTTGTTCCAAT 58.940 30.769 0.00 0.00 0.00 3.16
134 135 6.418946 AGGGCTGTTTTTAATTTTGTTCCAA 58.581 32.000 0.00 0.00 0.00 3.53
135 136 5.995446 AGGGCTGTTTTTAATTTTGTTCCA 58.005 33.333 0.00 0.00 0.00 3.53
136 137 6.288294 AGAGGGCTGTTTTTAATTTTGTTCC 58.712 36.000 0.00 0.00 0.00 3.62
137 138 7.630026 CAAGAGGGCTGTTTTTAATTTTGTTC 58.370 34.615 0.00 0.00 0.00 3.18
138 139 6.038161 GCAAGAGGGCTGTTTTTAATTTTGTT 59.962 34.615 0.00 0.00 0.00 2.83
139 140 5.527214 GCAAGAGGGCTGTTTTTAATTTTGT 59.473 36.000 0.00 0.00 0.00 2.83
140 141 5.049474 GGCAAGAGGGCTGTTTTTAATTTTG 60.049 40.000 0.00 0.00 39.42 2.44
141 142 5.063204 GGCAAGAGGGCTGTTTTTAATTTT 58.937 37.500 0.00 0.00 39.42 1.82
142 143 4.504864 GGGCAAGAGGGCTGTTTTTAATTT 60.505 41.667 0.00 0.00 42.84 1.82
143 144 3.007940 GGGCAAGAGGGCTGTTTTTAATT 59.992 43.478 0.00 0.00 42.84 1.40
144 145 2.567169 GGGCAAGAGGGCTGTTTTTAAT 59.433 45.455 0.00 0.00 42.84 1.40
145 146 1.967779 GGGCAAGAGGGCTGTTTTTAA 59.032 47.619 0.00 0.00 42.84 1.52
146 147 1.627864 GGGCAAGAGGGCTGTTTTTA 58.372 50.000 0.00 0.00 42.84 1.52
147 148 1.121407 GGGGCAAGAGGGCTGTTTTT 61.121 55.000 0.00 0.00 42.84 1.94
148 149 1.533994 GGGGCAAGAGGGCTGTTTT 60.534 57.895 0.00 0.00 42.84 2.43
149 150 2.118294 GGGGCAAGAGGGCTGTTT 59.882 61.111 0.00 0.00 42.84 2.83
150 151 3.984732 GGGGGCAAGAGGGCTGTT 61.985 66.667 0.00 0.00 42.84 3.16
152 153 4.120755 GAGGGGGCAAGAGGGCTG 62.121 72.222 0.00 0.00 42.84 4.85
153 154 3.899085 AAGAGGGGGCAAGAGGGCT 62.899 63.158 0.00 0.00 42.84 5.19
154 155 2.446982 AAAAGAGGGGGCAAGAGGGC 62.447 60.000 0.00 0.00 42.44 5.19
155 156 0.115152 AAAAAGAGGGGGCAAGAGGG 59.885 55.000 0.00 0.00 0.00 4.30
156 157 2.225017 TGTAAAAAGAGGGGGCAAGAGG 60.225 50.000 0.00 0.00 0.00 3.69
157 158 3.154827 TGTAAAAAGAGGGGGCAAGAG 57.845 47.619 0.00 0.00 0.00 2.85
158 159 3.075283 TCATGTAAAAAGAGGGGGCAAGA 59.925 43.478 0.00 0.00 0.00 3.02
159 160 3.430453 TCATGTAAAAAGAGGGGGCAAG 58.570 45.455 0.00 0.00 0.00 4.01
160 161 3.075283 TCTCATGTAAAAAGAGGGGGCAA 59.925 43.478 0.00 0.00 0.00 4.52
161 162 2.647299 TCTCATGTAAAAAGAGGGGGCA 59.353 45.455 0.00 0.00 0.00 5.36
162 163 3.282885 CTCTCATGTAAAAAGAGGGGGC 58.717 50.000 0.00 0.00 34.24 5.80
167 168 8.097662 ACCTTCTTACCTCTCATGTAAAAAGAG 58.902 37.037 2.15 2.15 31.07 2.85
168 169 7.974504 ACCTTCTTACCTCTCATGTAAAAAGA 58.025 34.615 0.00 0.00 31.07 2.52
169 170 9.720769 TTACCTTCTTACCTCTCATGTAAAAAG 57.279 33.333 0.00 0.00 29.88 2.27
170 171 9.720769 CTTACCTTCTTACCTCTCATGTAAAAA 57.279 33.333 0.00 0.00 0.00 1.94
171 172 9.096823 TCTTACCTTCTTACCTCTCATGTAAAA 57.903 33.333 0.00 0.00 0.00 1.52
172 173 8.660295 TCTTACCTTCTTACCTCTCATGTAAA 57.340 34.615 0.00 0.00 0.00 2.01
173 174 7.894364 ACTCTTACCTTCTTACCTCTCATGTAA 59.106 37.037 0.00 0.00 0.00 2.41
174 175 7.411808 ACTCTTACCTTCTTACCTCTCATGTA 58.588 38.462 0.00 0.00 0.00 2.29
175 176 6.257586 ACTCTTACCTTCTTACCTCTCATGT 58.742 40.000 0.00 0.00 0.00 3.21
176 177 6.783708 ACTCTTACCTTCTTACCTCTCATG 57.216 41.667 0.00 0.00 0.00 3.07
177 178 8.117312 ACTAACTCTTACCTTCTTACCTCTCAT 58.883 37.037 0.00 0.00 0.00 2.90
178 179 7.468496 ACTAACTCTTACCTTCTTACCTCTCA 58.532 38.462 0.00 0.00 0.00 3.27
179 180 7.943079 ACTAACTCTTACCTTCTTACCTCTC 57.057 40.000 0.00 0.00 0.00 3.20
180 181 9.465199 CTAACTAACTCTTACCTTCTTACCTCT 57.535 37.037 0.00 0.00 0.00 3.69
181 182 9.460019 TCTAACTAACTCTTACCTTCTTACCTC 57.540 37.037 0.00 0.00 0.00 3.85
182 183 9.241919 GTCTAACTAACTCTTACCTTCTTACCT 57.758 37.037 0.00 0.00 0.00 3.08
183 184 8.465999 GGTCTAACTAACTCTTACCTTCTTACC 58.534 40.741 0.00 0.00 0.00 2.85
184 185 8.465999 GGGTCTAACTAACTCTTACCTTCTTAC 58.534 40.741 0.00 0.00 0.00 2.34
185 186 8.172741 TGGGTCTAACTAACTCTTACCTTCTTA 58.827 37.037 0.00 0.00 0.00 2.10
186 187 7.015064 TGGGTCTAACTAACTCTTACCTTCTT 58.985 38.462 0.00 0.00 0.00 2.52
187 188 6.436847 GTGGGTCTAACTAACTCTTACCTTCT 59.563 42.308 0.00 0.00 0.00 2.85
188 189 6.436847 AGTGGGTCTAACTAACTCTTACCTTC 59.563 42.308 0.00 0.00 0.00 3.46
189 190 6.321321 AGTGGGTCTAACTAACTCTTACCTT 58.679 40.000 0.00 0.00 0.00 3.50
190 191 5.901598 AGTGGGTCTAACTAACTCTTACCT 58.098 41.667 0.00 0.00 0.00 3.08
191 192 6.889177 AGTAGTGGGTCTAACTAACTCTTACC 59.111 42.308 0.00 0.00 32.10 2.85
192 193 7.936496 AGTAGTGGGTCTAACTAACTCTTAC 57.064 40.000 0.00 0.00 32.10 2.34
193 194 8.946797 AAAGTAGTGGGTCTAACTAACTCTTA 57.053 34.615 0.00 0.00 32.10 2.10
194 195 7.852550 AAAGTAGTGGGTCTAACTAACTCTT 57.147 36.000 0.00 0.00 32.10 2.85
195 196 8.946797 TTAAAGTAGTGGGTCTAACTAACTCT 57.053 34.615 0.00 0.00 32.10 3.24
196 197 9.987272 TTTTAAAGTAGTGGGTCTAACTAACTC 57.013 33.333 0.00 0.00 32.10 3.01
282 283 5.472478 CCTAAAAACACTGTTCCCTCTTACC 59.528 44.000 0.00 0.00 0.00 2.85
295 296 4.006319 GAGCTCTCATGCCTAAAAACACT 58.994 43.478 6.43 0.00 0.00 3.55
324 325 2.775032 TAACTGGCGCGAAGGGTGAC 62.775 60.000 12.10 0.00 44.71 3.67
333 334 3.428282 GGGTTGGTAACTGGCGCG 61.428 66.667 0.00 0.00 37.61 6.86
378 379 0.944386 CAACTCACTTGTTGGGTCGG 59.056 55.000 0.00 0.00 38.32 4.79
389 390 1.754380 TACTGGCCGCACAACTCACT 61.754 55.000 0.00 0.00 0.00 3.41
402 407 5.057149 TGAGTGAAGTTTTCTCTTACTGGC 58.943 41.667 8.83 0.00 33.98 4.85
437 442 3.865224 TTAAAAAGTCAACGGTCGAGC 57.135 42.857 4.06 4.06 0.00 5.03
522 529 9.581289 TGTGAAGTTTTCTAAAATCCCTAATCA 57.419 29.630 0.00 0.00 0.00 2.57
722 730 8.857098 CCATGAACATCTTCTTAAATCCATGAT 58.143 33.333 0.00 0.00 31.99 2.45
864 874 5.385198 TGCTCTACTGGTTTTGGAAATCTT 58.615 37.500 0.00 0.00 0.00 2.40
865 875 4.985538 TGCTCTACTGGTTTTGGAAATCT 58.014 39.130 0.00 0.00 0.00 2.40
866 876 4.762251 ACTGCTCTACTGGTTTTGGAAATC 59.238 41.667 0.00 0.00 0.00 2.17
867 877 4.729868 ACTGCTCTACTGGTTTTGGAAAT 58.270 39.130 0.00 0.00 0.00 2.17
868 878 4.164843 ACTGCTCTACTGGTTTTGGAAA 57.835 40.909 0.00 0.00 0.00 3.13
869 879 3.857157 ACTGCTCTACTGGTTTTGGAA 57.143 42.857 0.00 0.00 0.00 3.53
870 880 3.476552 CAACTGCTCTACTGGTTTTGGA 58.523 45.455 0.00 0.00 0.00 3.53
871 881 2.030805 GCAACTGCTCTACTGGTTTTGG 60.031 50.000 0.00 0.00 38.21 3.28
872 882 3.273919 GCAACTGCTCTACTGGTTTTG 57.726 47.619 0.00 0.00 38.21 2.44
943 953 2.061182 ATAAGGGCTCGTCGCTCGTC 62.061 60.000 0.00 0.00 46.47 4.20
953 963 2.948315 CAGGCAAGAAGAATAAGGGCTC 59.052 50.000 0.00 0.00 0.00 4.70
1113 1123 5.875910 CGGAGAGATCGATTACCAGTAGTAT 59.124 44.000 0.00 0.00 0.00 2.12
1221 1231 0.394899 CCACCTCCTGCCAAGAATCC 60.395 60.000 0.00 0.00 0.00 3.01
1228 1238 1.360393 AACCTTTCCACCTCCTGCCA 61.360 55.000 0.00 0.00 0.00 4.92
1323 1333 5.670792 ACATTCCAATTCAGCACATCATT 57.329 34.783 0.00 0.00 0.00 2.57
1324 1334 6.039047 GTCTACATTCCAATTCAGCACATCAT 59.961 38.462 0.00 0.00 0.00 2.45
1338 1360 4.942944 TCTCAACCCTAGTCTACATTCCA 58.057 43.478 0.00 0.00 0.00 3.53
1345 1367 8.946248 TGAACTCTATATCTCAACCCTAGTCTA 58.054 37.037 0.00 0.00 0.00 2.59
1380 1402 7.724061 TCAAGGTTTTAAGCCTAGAACAAGAAT 59.276 33.333 0.00 0.00 34.81 2.40
1385 1407 5.937111 AGTCAAGGTTTTAAGCCTAGAACA 58.063 37.500 0.00 0.00 34.81 3.18
1582 1608 9.933723 GTAAAGAAGGTAAGACAAAGTATACCA 57.066 33.333 0.00 0.00 40.21 3.25
1584 1610 9.933723 TGGTAAAGAAGGTAAGACAAAGTATAC 57.066 33.333 0.00 0.00 0.00 1.47
1608 1634 6.411492 GCGCACAAAATAAATTGCATATTTGG 59.589 34.615 0.30 9.46 34.18 3.28
1631 1992 2.751166 ATCCCTAATCTCCAATCGCG 57.249 50.000 0.00 0.00 0.00 5.87
1634 1995 7.229506 CCACAGTTAAATCCCTAATCTCCAATC 59.770 40.741 0.00 0.00 0.00 2.67
1647 2008 8.507524 AGTAAAGCTAATCCACAGTTAAATCC 57.492 34.615 0.00 0.00 0.00 3.01
1655 2018 8.723942 AATCACTTAGTAAAGCTAATCCACAG 57.276 34.615 0.00 0.00 38.82 3.66
1658 2021 9.162764 GTTGAATCACTTAGTAAAGCTAATCCA 57.837 33.333 0.00 0.00 38.82 3.41
1659 2022 8.328864 CGTTGAATCACTTAGTAAAGCTAATCC 58.671 37.037 0.00 0.00 38.82 3.01
1837 2200 7.593273 GGACGAACATCAATAATTCAACACAAA 59.407 33.333 0.00 0.00 0.00 2.83
1838 2201 7.040755 AGGACGAACATCAATAATTCAACACAA 60.041 33.333 0.00 0.00 0.00 3.33
1856 2219 3.718815 AGAGTGAAACAAGAGGACGAAC 58.281 45.455 0.00 0.00 41.43 3.95
1942 2305 8.956533 AAATGCAACCATTACCCAATAAATAC 57.043 30.769 0.00 0.00 40.69 1.89
1947 2310 8.986991 AGAATTAAATGCAACCATTACCCAATA 58.013 29.630 0.00 0.00 40.69 1.90
1953 2316 8.028938 ACAGTGAGAATTAAATGCAACCATTAC 58.971 33.333 0.00 0.00 40.69 1.89
1997 2360 6.992063 AATCAGTTCCTTACATAGCAAGTG 57.008 37.500 0.00 0.00 0.00 3.16
2069 2432 5.699458 TCACCTTCTTTTCCTCGTTTGATAC 59.301 40.000 0.00 0.00 0.00 2.24
2077 2440 5.239525 AGACAAAATCACCTTCTTTTCCTCG 59.760 40.000 0.00 0.00 0.00 4.63
2128 2491 2.993899 AGCAAGTAATACACGCACTGAC 59.006 45.455 6.80 0.00 0.00 3.51
2202 2565 8.925161 AAATACATCACAACCCATAAAAATCG 57.075 30.769 0.00 0.00 0.00 3.34
2442 2814 9.350951 ACATGCCCTTACTCCTAATTTATTTAC 57.649 33.333 0.00 0.00 0.00 2.01
2490 2862 7.195374 AGTCATACTAGCCTAAATTTGTGGA 57.805 36.000 13.94 0.00 0.00 4.02
2616 2988 6.827727 ACTACCACAAATAGATTAGCCGATT 58.172 36.000 0.00 0.00 0.00 3.34
2617 2989 6.041637 TGACTACCACAAATAGATTAGCCGAT 59.958 38.462 0.00 0.00 0.00 4.18
2618 2990 5.361571 TGACTACCACAAATAGATTAGCCGA 59.638 40.000 0.00 0.00 0.00 5.54
2619 2991 5.597806 TGACTACCACAAATAGATTAGCCG 58.402 41.667 0.00 0.00 0.00 5.52
2620 2992 6.260271 GGTTGACTACCACAAATAGATTAGCC 59.740 42.308 0.76 0.00 46.92 3.93
2621 2993 7.247929 GGTTGACTACCACAAATAGATTAGC 57.752 40.000 0.76 0.00 46.92 3.09
2638 3010 2.610438 AATGGGATGCTTGGTTGACT 57.390 45.000 0.00 0.00 0.00 3.41
2640 3012 3.096092 GGTAAATGGGATGCTTGGTTGA 58.904 45.455 0.00 0.00 0.00 3.18
2737 3481 5.468540 AGCATAAAGAAAAAGAACCCACC 57.531 39.130 0.00 0.00 0.00 4.61
2751 3501 8.892723 TGTGGTAGACATCAATAAAGCATAAAG 58.107 33.333 0.00 0.00 0.00 1.85
2752 3502 8.800370 TGTGGTAGACATCAATAAAGCATAAA 57.200 30.769 0.00 0.00 0.00 1.40
2763 3513 7.776107 TGAAAACAAATTGTGGTAGACATCAA 58.224 30.769 0.00 0.00 33.40 2.57
2764 3514 7.340122 TGAAAACAAATTGTGGTAGACATCA 57.660 32.000 0.00 0.00 33.40 3.07
2765 3515 7.867403 ACATGAAAACAAATTGTGGTAGACATC 59.133 33.333 0.00 0.00 33.40 3.06
2806 3556 5.825593 TCACATAATCTCCCTAATGTCCC 57.174 43.478 0.00 0.00 30.32 4.46
2812 3563 7.161404 CCAAATCGATCACATAATCTCCCTAA 58.839 38.462 0.00 0.00 0.00 2.69
2834 3585 6.778834 AACAATGATGTATCAGAATGCCAA 57.221 33.333 0.74 0.00 39.40 4.52
3055 3807 2.093869 GTGGTTGAATGGCATCAGCAAT 60.094 45.455 0.00 0.00 44.61 3.56
3205 3957 4.498009 CGAACCAATATGCATCAGGTTTCC 60.498 45.833 23.25 14.62 42.26 3.13
3312 4064 6.893583 AGGATGAGAACATAAGTAGCAACAT 58.106 36.000 0.00 0.00 36.82 2.71
3316 4068 5.189736 ACCAAGGATGAGAACATAAGTAGCA 59.810 40.000 0.00 0.00 36.82 3.49
3386 4720 6.560003 TTCAACACAGACATGTATCCCTAT 57.440 37.500 0.00 0.00 37.65 2.57
3387 4721 6.367374 TTTCAACACAGACATGTATCCCTA 57.633 37.500 0.00 0.00 37.65 3.53
3388 4722 4.908601 TTCAACACAGACATGTATCCCT 57.091 40.909 0.00 0.00 37.65 4.20
3389 4723 7.807977 ATATTTCAACACAGACATGTATCCC 57.192 36.000 0.00 0.00 37.65 3.85
3390 4724 8.993121 CCTATATTTCAACACAGACATGTATCC 58.007 37.037 0.00 0.00 37.65 2.59
3391 4725 9.764363 TCCTATATTTCAACACAGACATGTATC 57.236 33.333 0.00 0.00 37.65 2.24
3392 4726 9.770097 CTCCTATATTTCAACACAGACATGTAT 57.230 33.333 0.00 0.00 37.65 2.29
3512 4846 8.124823 GTCTGATGCAAATGATCGAAGAAATAA 58.875 33.333 0.00 0.00 43.58 1.40
3544 4878 0.396139 CCATGGGGTCCTTCATGTGG 60.396 60.000 2.85 0.00 39.12 4.17
3560 4894 4.546674 GGTAACTCAATCCAATTCCCCAT 58.453 43.478 0.00 0.00 0.00 4.00
3678 5012 2.825861 TGTTCCGGGAACTAGTTGAC 57.174 50.000 33.20 12.07 42.39 3.18
3683 5017 3.611766 ACTGATTGTTCCGGGAACTAG 57.388 47.619 33.20 26.35 42.39 2.57
3704 5038 9.679661 TCTAGAAATGTAAATTTCCTATGCACA 57.320 29.630 13.75 0.00 40.44 4.57
3724 5058 4.974645 ACTTCCCATTGTGTGTCTAGAA 57.025 40.909 0.00 0.00 0.00 2.10
3808 5154 9.787435 AGTAAATGTGTTCCAAACTATGAACTA 57.213 29.630 0.00 0.00 0.00 2.24
3828 5174 8.164070 ACAGGTTGGAAGTAAGAATGAGTAAAT 58.836 33.333 0.00 0.00 0.00 1.40
3840 5186 5.070001 CCATCTGAAACAGGTTGGAAGTAA 58.930 41.667 12.71 0.00 37.35 2.24
3866 5212 6.121776 TGTACTCATTCAGGTTATTGGTGT 57.878 37.500 0.00 0.00 0.00 4.16
3891 5237 3.043586 GACATCATTAGTAGACACGGCG 58.956 50.000 4.80 4.80 0.00 6.46
3895 5241 5.505985 GGTCTCCGACATCATTAGTAGACAC 60.506 48.000 0.00 0.00 35.04 3.67
3927 5273 5.538849 TGCGGTAGACATCATTAACCATA 57.461 39.130 0.00 0.00 0.00 2.74
3947 5293 1.135915 TCACCACACCATGTTTGTTGC 59.864 47.619 0.00 0.00 0.00 4.17
3988 5334 1.209747 AGGCAACCGGGAGAAGAATAC 59.790 52.381 6.32 0.00 37.17 1.89
3990 5336 0.035056 CAGGCAACCGGGAGAAGAAT 60.035 55.000 6.32 0.00 37.17 2.40
4034 5382 4.384056 ACAAGCCAATCAAGATATCTCCG 58.616 43.478 5.51 0.60 0.00 4.63
4035 5383 4.759183 GGACAAGCCAATCAAGATATCTCC 59.241 45.833 5.51 0.00 36.34 3.71
4106 5476 5.880332 TGATTAACAAACTCCAGATAGGCAC 59.120 40.000 0.00 0.00 37.29 5.01
4199 5576 7.223584 TCATCATTTCAGGTTTGAGTAACTCA 58.776 34.615 0.00 0.00 38.87 3.41
4251 5628 9.552695 AGATATGGATCCTTGATATTCACAGTA 57.447 33.333 14.23 0.00 31.81 2.74
4256 5633 8.915813 TGGTAGATATGGATCCTTGATATTCA 57.084 34.615 14.23 1.01 31.81 2.57
4291 5668 3.392947 TGGTAGATATTTCATCGCCCCAA 59.607 43.478 0.00 0.00 0.00 4.12
4292 5669 2.976185 TGGTAGATATTTCATCGCCCCA 59.024 45.455 0.00 0.00 0.00 4.96
4293 5670 3.695830 TGGTAGATATTTCATCGCCCC 57.304 47.619 0.00 0.00 0.00 5.80
4294 5671 5.049405 CAGTTTGGTAGATATTTCATCGCCC 60.049 44.000 0.00 0.00 0.00 6.13
4295 5672 5.049405 CCAGTTTGGTAGATATTTCATCGCC 60.049 44.000 0.00 0.00 31.35 5.54
4296 5673 5.990408 CCAGTTTGGTAGATATTTCATCGC 58.010 41.667 0.00 0.00 31.35 4.58
4382 5823 7.223582 CGCATGTTTCTCTCATTTATACACTCT 59.776 37.037 0.00 0.00 0.00 3.24
4452 5895 2.651455 GTGGTGGTTTAGGGATAAGCC 58.349 52.381 0.00 0.00 0.00 4.35
4560 6003 0.601311 GTAGGTGATGATCGGCAGGC 60.601 60.000 0.00 0.00 0.00 4.85
4561 6004 1.043816 AGTAGGTGATGATCGGCAGG 58.956 55.000 0.00 0.00 0.00 4.85
4562 6005 2.887783 AGTAGTAGGTGATGATCGGCAG 59.112 50.000 0.00 0.00 0.00 4.85
4563 6006 2.945456 AGTAGTAGGTGATGATCGGCA 58.055 47.619 0.00 0.00 0.00 5.69
4638 6081 3.599343 TCTGTGATTTGATGGAACCGAG 58.401 45.455 0.00 0.00 0.00 4.63
4697 6140 5.500645 AAGCTTTAGACGGGAATTATTGC 57.499 39.130 0.00 0.00 0.00 3.56
4712 6155 2.548057 CAGTGCGTTGGAGAAAGCTTTA 59.452 45.455 12.68 0.00 37.45 1.85
4713 6156 1.334869 CAGTGCGTTGGAGAAAGCTTT 59.665 47.619 12.53 12.53 37.45 3.51
4714 6157 0.947244 CAGTGCGTTGGAGAAAGCTT 59.053 50.000 0.00 0.00 37.45 3.74
4715 6158 0.886490 CCAGTGCGTTGGAGAAAGCT 60.886 55.000 0.08 0.00 40.87 3.74
4763 6206 2.546368 GGTTGTGTGCGTACAATCAAGA 59.454 45.455 8.25 0.00 42.02 3.02
4780 6223 1.155889 TGTATCGTTGCAGCTGGTTG 58.844 50.000 17.12 0.00 0.00 3.77
4824 6267 1.917955 CTCCATGCGTACGTGTACTTG 59.082 52.381 17.90 8.13 34.04 3.16
4857 6307 9.683069 ATTCTTGTCATGTCTGAAATTTTGTAC 57.317 29.630 0.00 0.00 31.85 2.90
4884 6334 4.676924 GCAAATACAAAGAGTGCACTTCAC 59.323 41.667 22.65 8.50 45.98 3.18
4895 6345 3.632604 TGACCAAACGGCAAATACAAAGA 59.367 39.130 0.00 0.00 0.00 2.52
4936 6386 9.643693 GTGAAAAATTCCATCATATGACACTTT 57.356 29.630 7.78 1.70 0.00 2.66
4937 6387 9.028284 AGTGAAAAATTCCATCATATGACACTT 57.972 29.630 7.78 0.00 0.00 3.16
4939 6389 9.643693 AAAGTGAAAAATTCCATCATATGACAC 57.356 29.630 7.78 7.52 0.00 3.67
4940 6390 9.859427 GAAAGTGAAAAATTCCATCATATGACA 57.141 29.630 7.78 0.00 0.00 3.58
4962 6412 3.724374 TCGACTACCACAAACTGGAAAG 58.276 45.455 0.00 0.00 43.95 2.62
4973 6424 5.579564 AGGTCTCTTTTATCGACTACCAC 57.420 43.478 0.00 0.00 0.00 4.16
4974 6425 5.479375 ACAAGGTCTCTTTTATCGACTACCA 59.521 40.000 0.00 0.00 0.00 3.25
4982 6433 8.678199 CCCTTTTATGACAAGGTCTCTTTTATC 58.322 37.037 0.00 0.00 39.50 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.