Multiple sequence alignment - TraesCS1D01G241900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G241900 chr1D 100.000 2861 0 0 1 2861 332414117 332411257 0.000000e+00 5284
1 TraesCS1D01G241900 chr1D 79.110 1618 265 49 1007 2576 427039110 427040702 0.000000e+00 1048
2 TraesCS1D01G241900 chr1D 100.000 398 0 0 3231 3628 332410887 332410490 0.000000e+00 736
3 TraesCS1D01G241900 chr1D 80.490 938 145 21 1007 1916 426978317 426979244 0.000000e+00 684
4 TraesCS1D01G241900 chr1D 94.633 354 16 3 1 351 489982729 489983082 2.460000e-151 545
5 TraesCS1D01G241900 chr1B 93.563 1942 107 13 927 2861 447174755 447172825 0.000000e+00 2878
6 TraesCS1D01G241900 chr1B 79.594 936 157 20 1007 1916 576921362 576922289 1.100000e-179 640
7 TraesCS1D01G241900 chr1B 79.446 939 153 25 1007 1916 577036834 577037761 2.380000e-176 628
8 TraesCS1D01G241900 chr1B 90.176 397 34 3 3232 3628 447172771 447172380 2.500000e-141 512
9 TraesCS1D01G241900 chr1B 86.626 486 28 13 455 929 447175964 447175505 1.500000e-138 503
10 TraesCS1D01G241900 chr1B 80.522 498 76 9 1153 1629 577206807 577207304 2.660000e-96 363
11 TraesCS1D01G241900 chr1A 93.391 1271 57 8 704 1955 430190297 430189035 0.000000e+00 1857
12 TraesCS1D01G241900 chr1A 91.886 912 58 7 1958 2861 430188956 430188053 0.000000e+00 1260
13 TraesCS1D01G241900 chr1A 81.693 945 133 20 1007 1916 522189658 522190597 0.000000e+00 750
14 TraesCS1D01G241900 chr1A 79.574 940 150 24 1007 1916 521977626 521978553 5.110000e-178 634
15 TraesCS1D01G241900 chr1A 78.936 940 155 26 1007 1916 521989815 521990741 1.860000e-167 599
16 TraesCS1D01G241900 chr1A 93.467 398 25 1 3231 3628 430187999 430187603 1.120000e-164 590
17 TraesCS1D01G241900 chr1A 84.753 223 7 6 433 647 430190621 430190418 7.950000e-47 198
18 TraesCS1D01G241900 chr4D 96.884 353 9 1 1 351 40799496 40799848 1.120000e-164 590
19 TraesCS1D01G241900 chr4D 94.663 356 13 5 1 351 35124162 35123808 6.850000e-152 547
20 TraesCS1D01G241900 chr5D 90.351 456 18 4 1 432 542718621 542718168 3.140000e-160 575
21 TraesCS1D01G241900 chr5D 95.467 353 14 2 1 351 410249459 410249811 2.450000e-156 562
22 TraesCS1D01G241900 chr5D 94.901 353 16 2 1 351 556930809 556930457 5.290000e-153 551
23 TraesCS1D01G241900 chr2D 95.170 352 16 1 1 351 539164867 539165218 4.090000e-154 555
24 TraesCS1D01G241900 chr7B 94.915 354 15 2 1 351 733713784 733714137 5.290000e-153 551
25 TraesCS1D01G241900 chr3D 94.618 353 17 2 1 351 327722375 327722023 2.460000e-151 545
26 TraesCS1D01G241900 chr2A 88.591 447 26 7 3 424 584147077 584147523 1.490000e-143 520
27 TraesCS1D01G241900 chrUn 79.708 685 108 19 1007 1668 371289726 371289050 1.970000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G241900 chr1D 332410490 332414117 3627 True 3010.000000 5284 100.000000 1 3628 2 chr1D.!!$R1 3627
1 TraesCS1D01G241900 chr1D 427039110 427040702 1592 False 1048.000000 1048 79.110000 1007 2576 1 chr1D.!!$F2 1569
2 TraesCS1D01G241900 chr1D 426978317 426979244 927 False 684.000000 684 80.490000 1007 1916 1 chr1D.!!$F1 909
3 TraesCS1D01G241900 chr1B 447172380 447175964 3584 True 1297.666667 2878 90.121667 455 3628 3 chr1B.!!$R1 3173
4 TraesCS1D01G241900 chr1B 576921362 576922289 927 False 640.000000 640 79.594000 1007 1916 1 chr1B.!!$F1 909
5 TraesCS1D01G241900 chr1B 577036834 577037761 927 False 628.000000 628 79.446000 1007 1916 1 chr1B.!!$F2 909
6 TraesCS1D01G241900 chr1A 430187603 430190621 3018 True 976.250000 1857 90.874250 433 3628 4 chr1A.!!$R1 3195
7 TraesCS1D01G241900 chr1A 522189658 522190597 939 False 750.000000 750 81.693000 1007 1916 1 chr1A.!!$F3 909
8 TraesCS1D01G241900 chr1A 521977626 521978553 927 False 634.000000 634 79.574000 1007 1916 1 chr1A.!!$F1 909
9 TraesCS1D01G241900 chr1A 521989815 521990741 926 False 599.000000 599 78.936000 1007 1916 1 chr1A.!!$F2 909
10 TraesCS1D01G241900 chrUn 371289050 371289726 676 True 466.000000 466 79.708000 1007 1668 1 chrUn.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.030369 GGTACGAGGCCTGACGTATG 59.970 60.0 24.5 3.71 44.50 2.39 F
260 261 0.030369 GTACGAGGCCTGACGTATGG 59.970 60.0 24.5 0.00 44.50 2.74 F
705 826 0.107703 CACCACACGCCCATATCTGT 60.108 55.0 0.0 0.00 0.00 3.41 F
2180 3185 0.115152 TTGAGGAGGAGCTGGAGACA 59.885 55.0 0.0 0.00 39.59 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 2478 0.034756 TGGAGATGACGGTGTTGGTG 59.965 55.000 0.00 0.00 0.00 4.17 R
1863 2792 0.179045 CCAGCCTAAACCCCTGATCG 60.179 60.000 0.00 0.00 0.00 3.69 R
2624 3632 1.005975 GTCGACACGATGCATGCTTAC 60.006 52.381 20.33 9.07 38.42 2.34 R
3598 4618 0.323957 AAGGTGGCGGACTAAAGGTC 59.676 55.000 0.00 0.00 43.79 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.076863 GCAACTGCCTAGTGTTAGTGG 58.923 52.381 0.00 0.00 37.19 4.00
26 27 2.699954 CAACTGCCTAGTGTTAGTGGG 58.300 52.381 0.00 0.00 37.19 4.61
27 28 2.025636 ACTGCCTAGTGTTAGTGGGT 57.974 50.000 0.00 0.00 35.34 4.51
28 29 1.623811 ACTGCCTAGTGTTAGTGGGTG 59.376 52.381 0.00 0.00 35.34 4.61
29 30 0.981183 TGCCTAGTGTTAGTGGGTGG 59.019 55.000 0.00 0.00 0.00 4.61
30 31 0.392595 GCCTAGTGTTAGTGGGTGGC 60.393 60.000 0.00 0.00 0.00 5.01
31 32 0.981183 CCTAGTGTTAGTGGGTGGCA 59.019 55.000 0.00 0.00 0.00 4.92
32 33 1.349688 CCTAGTGTTAGTGGGTGGCAA 59.650 52.381 0.00 0.00 0.00 4.52
33 34 2.423577 CTAGTGTTAGTGGGTGGCAAC 58.576 52.381 0.00 0.00 0.00 4.17
34 35 0.843984 AGTGTTAGTGGGTGGCAACT 59.156 50.000 0.97 0.00 37.61 3.16
35 36 1.202770 AGTGTTAGTGGGTGGCAACTC 60.203 52.381 0.97 0.00 37.61 3.01
44 45 2.091555 TGGGTGGCAACTCCTAAAGTTT 60.092 45.455 0.97 0.00 46.26 2.66
45 46 2.296190 GGGTGGCAACTCCTAAAGTTTG 59.704 50.000 0.97 0.00 46.26 2.93
46 47 3.219281 GGTGGCAACTCCTAAAGTTTGA 58.781 45.455 0.00 0.00 46.26 2.69
47 48 3.634910 GGTGGCAACTCCTAAAGTTTGAA 59.365 43.478 0.00 0.00 46.26 2.69
48 49 4.098807 GGTGGCAACTCCTAAAGTTTGAAA 59.901 41.667 0.00 0.00 46.26 2.69
49 50 5.221441 GGTGGCAACTCCTAAAGTTTGAAAT 60.221 40.000 0.00 0.00 46.26 2.17
50 51 5.920840 GTGGCAACTCCTAAAGTTTGAAATC 59.079 40.000 0.00 0.00 46.26 2.17
51 52 5.596361 TGGCAACTCCTAAAGTTTGAAATCA 59.404 36.000 0.00 0.00 46.26 2.57
52 53 6.267471 TGGCAACTCCTAAAGTTTGAAATCAT 59.733 34.615 0.00 0.00 46.26 2.45
53 54 6.587608 GGCAACTCCTAAAGTTTGAAATCATG 59.412 38.462 0.00 0.00 46.26 3.07
54 55 6.587608 GCAACTCCTAAAGTTTGAAATCATGG 59.412 38.462 0.00 0.00 46.26 3.66
55 56 6.272822 ACTCCTAAAGTTTGAAATCATGGC 57.727 37.500 0.00 0.00 33.03 4.40
56 57 5.774690 ACTCCTAAAGTTTGAAATCATGGCA 59.225 36.000 0.00 0.00 33.03 4.92
57 58 6.267471 ACTCCTAAAGTTTGAAATCATGGCAA 59.733 34.615 0.00 0.00 33.03 4.52
58 59 6.454795 TCCTAAAGTTTGAAATCATGGCAAC 58.545 36.000 0.00 0.00 0.00 4.17
59 60 6.267471 TCCTAAAGTTTGAAATCATGGCAACT 59.733 34.615 0.00 0.00 37.61 3.16
60 61 6.366877 CCTAAAGTTTGAAATCATGGCAACTG 59.633 38.462 0.00 0.00 37.61 3.16
61 62 3.656559 AGTTTGAAATCATGGCAACTGC 58.343 40.909 0.00 0.00 41.14 4.40
62 63 3.069872 AGTTTGAAATCATGGCAACTGCA 59.930 39.130 3.76 0.00 44.36 4.41
63 64 3.306917 TTGAAATCATGGCAACTGCAG 57.693 42.857 13.48 13.48 44.36 4.41
64 65 2.241160 TGAAATCATGGCAACTGCAGT 58.759 42.857 15.25 15.25 44.36 4.40
65 66 3.419943 TGAAATCATGGCAACTGCAGTA 58.580 40.909 22.01 4.30 44.36 2.74
66 67 3.441222 TGAAATCATGGCAACTGCAGTAG 59.559 43.478 22.01 6.41 44.36 2.57
67 68 3.354948 AATCATGGCAACTGCAGTAGA 57.645 42.857 22.01 11.57 44.36 2.59
68 69 2.099141 TCATGGCAACTGCAGTAGAC 57.901 50.000 22.01 13.35 44.36 2.59
69 70 1.089920 CATGGCAACTGCAGTAGACC 58.910 55.000 22.01 21.02 44.36 3.85
70 71 0.692476 ATGGCAACTGCAGTAGACCA 59.308 50.000 27.80 27.80 44.36 4.02
71 72 0.472044 TGGCAACTGCAGTAGACCAA 59.528 50.000 25.15 13.58 44.36 3.67
72 73 1.133945 TGGCAACTGCAGTAGACCAAA 60.134 47.619 25.15 9.76 44.36 3.28
73 74 1.266989 GGCAACTGCAGTAGACCAAAC 59.733 52.381 22.01 3.47 44.36 2.93
74 75 1.266989 GCAACTGCAGTAGACCAAACC 59.733 52.381 22.01 0.00 41.59 3.27
75 76 2.571212 CAACTGCAGTAGACCAAACCA 58.429 47.619 22.01 0.00 0.00 3.67
76 77 3.149196 CAACTGCAGTAGACCAAACCAT 58.851 45.455 22.01 0.00 0.00 3.55
77 78 4.323417 CAACTGCAGTAGACCAAACCATA 58.677 43.478 22.01 0.00 0.00 2.74
78 79 3.939066 ACTGCAGTAGACCAAACCATAC 58.061 45.455 20.16 0.00 0.00 2.39
79 80 3.326588 ACTGCAGTAGACCAAACCATACA 59.673 43.478 20.16 0.00 0.00 2.29
80 81 4.019321 ACTGCAGTAGACCAAACCATACAT 60.019 41.667 20.16 0.00 0.00 2.29
81 82 4.260985 TGCAGTAGACCAAACCATACATG 58.739 43.478 0.00 0.00 0.00 3.21
92 93 1.466856 CCATACATGGCAACTGCAGT 58.533 50.000 15.25 15.25 41.75 4.40
93 94 1.820519 CCATACATGGCAACTGCAGTT 59.179 47.619 26.36 26.36 41.75 3.16
102 103 3.189568 AACTGCAGTTGAGCAACCA 57.810 47.368 30.66 1.68 45.13 3.67
103 104 1.696063 AACTGCAGTTGAGCAACCAT 58.304 45.000 30.66 2.58 45.13 3.55
104 105 0.956633 ACTGCAGTTGAGCAACCATG 59.043 50.000 15.25 4.34 45.13 3.66
105 106 0.242825 CTGCAGTTGAGCAACCATGG 59.757 55.000 11.19 11.19 45.13 3.66
106 107 1.080298 GCAGTTGAGCAACCATGGC 60.080 57.895 13.04 0.00 42.06 4.40
107 108 1.808531 GCAGTTGAGCAACCATGGCA 61.809 55.000 13.04 0.00 42.06 4.92
108 109 0.675083 CAGTTGAGCAACCATGGCAA 59.325 50.000 13.04 4.49 42.06 4.52
109 110 0.675633 AGTTGAGCAACCATGGCAAC 59.324 50.000 19.02 19.02 42.06 4.17
110 111 0.675633 GTTGAGCAACCATGGCAACT 59.324 50.000 19.25 11.63 36.73 3.16
111 112 0.675083 TTGAGCAACCATGGCAACTG 59.325 50.000 13.04 5.49 37.61 3.16
112 113 0.467844 TGAGCAACCATGGCAACTGT 60.468 50.000 13.04 0.00 37.61 3.55
113 114 1.202867 TGAGCAACCATGGCAACTGTA 60.203 47.619 13.04 0.00 37.61 2.74
114 115 1.470098 GAGCAACCATGGCAACTGTAG 59.530 52.381 13.04 0.00 37.61 2.74
115 116 1.202927 AGCAACCATGGCAACTGTAGT 60.203 47.619 13.04 0.00 37.61 2.73
116 117 1.613437 GCAACCATGGCAACTGTAGTT 59.387 47.619 13.04 0.00 39.12 2.24
126 127 1.808411 AACTGTAGTTGCCCGACATG 58.192 50.000 0.00 0.00 36.80 3.21
127 128 0.036388 ACTGTAGTTGCCCGACATGG 60.036 55.000 0.00 0.00 37.55 3.66
135 136 2.359354 CCCGACATGGCAACCGAA 60.359 61.111 0.00 0.00 35.87 4.30
136 137 2.398554 CCCGACATGGCAACCGAAG 61.399 63.158 0.00 0.00 35.87 3.79
137 138 1.671054 CCGACATGGCAACCGAAGT 60.671 57.895 0.00 0.00 0.00 3.01
138 139 1.234615 CCGACATGGCAACCGAAGTT 61.235 55.000 0.00 0.00 36.33 2.66
139 140 0.165944 CGACATGGCAACCGAAGTTC 59.834 55.000 0.00 0.00 32.45 3.01
140 141 1.234821 GACATGGCAACCGAAGTTCA 58.765 50.000 3.32 0.00 32.45 3.18
141 142 1.197721 GACATGGCAACCGAAGTTCAG 59.802 52.381 3.32 0.00 32.45 3.02
142 143 0.109597 CATGGCAACCGAAGTTCAGC 60.110 55.000 3.32 1.20 32.45 4.26
143 144 1.577328 ATGGCAACCGAAGTTCAGCG 61.577 55.000 3.32 0.00 32.45 5.18
144 145 1.959226 GGCAACCGAAGTTCAGCGA 60.959 57.895 3.32 0.00 32.45 4.93
145 146 1.204312 GCAACCGAAGTTCAGCGAC 59.796 57.895 3.32 0.00 32.45 5.19
146 147 1.495584 GCAACCGAAGTTCAGCGACA 61.496 55.000 3.32 0.00 32.45 4.35
147 148 1.148310 CAACCGAAGTTCAGCGACAT 58.852 50.000 3.32 0.00 32.45 3.06
148 149 1.136252 CAACCGAAGTTCAGCGACATG 60.136 52.381 3.32 0.00 32.45 3.21
149 150 0.670546 ACCGAAGTTCAGCGACATGG 60.671 55.000 3.32 0.00 0.00 3.66
150 151 1.421485 CGAAGTTCAGCGACATGGC 59.579 57.895 3.32 0.00 0.00 4.40
151 152 1.291184 CGAAGTTCAGCGACATGGCA 61.291 55.000 0.00 0.00 34.64 4.92
152 153 0.874390 GAAGTTCAGCGACATGGCAA 59.126 50.000 0.00 0.00 34.64 4.52
153 154 0.593128 AAGTTCAGCGACATGGCAAC 59.407 50.000 0.00 0.00 34.64 4.17
154 155 0.250467 AGTTCAGCGACATGGCAACT 60.250 50.000 0.00 0.00 34.64 3.16
155 156 0.110056 GTTCAGCGACATGGCAACTG 60.110 55.000 11.56 11.56 34.64 3.16
156 157 1.855213 TTCAGCGACATGGCAACTGC 61.855 55.000 12.73 0.88 41.14 4.40
157 158 2.281692 AGCGACATGGCAACTGCA 60.282 55.556 0.00 0.00 44.36 4.41
158 159 2.177531 GCGACATGGCAACTGCAG 59.822 61.111 13.48 13.48 44.36 4.41
159 160 2.177531 CGACATGGCAACTGCAGC 59.822 61.111 15.27 0.00 44.36 5.25
160 161 2.330372 CGACATGGCAACTGCAGCT 61.330 57.895 15.27 0.00 44.36 4.24
161 162 1.020861 CGACATGGCAACTGCAGCTA 61.021 55.000 15.27 0.00 44.36 3.32
162 163 1.167851 GACATGGCAACTGCAGCTAA 58.832 50.000 15.27 0.00 44.36 3.09
163 164 1.541147 GACATGGCAACTGCAGCTAAA 59.459 47.619 15.27 0.00 44.36 1.85
164 165 1.270550 ACATGGCAACTGCAGCTAAAC 59.729 47.619 15.27 1.06 44.36 2.01
165 166 0.523072 ATGGCAACTGCAGCTAAACG 59.477 50.000 15.27 0.00 44.36 3.60
166 167 0.533978 TGGCAACTGCAGCTAAACGA 60.534 50.000 15.27 0.00 44.36 3.85
167 168 0.591170 GGCAACTGCAGCTAAACGAA 59.409 50.000 15.27 0.00 44.36 3.85
168 169 1.200020 GGCAACTGCAGCTAAACGAAT 59.800 47.619 15.27 0.00 44.36 3.34
169 170 2.418628 GGCAACTGCAGCTAAACGAATA 59.581 45.455 15.27 0.00 44.36 1.75
170 171 3.065371 GGCAACTGCAGCTAAACGAATAT 59.935 43.478 15.27 0.00 44.36 1.28
171 172 4.031028 GCAACTGCAGCTAAACGAATATG 58.969 43.478 15.27 0.00 41.59 1.78
172 173 4.591202 CAACTGCAGCTAAACGAATATGG 58.409 43.478 15.27 0.00 0.00 2.74
173 174 4.137116 ACTGCAGCTAAACGAATATGGA 57.863 40.909 15.27 0.00 0.00 3.41
174 175 3.871594 ACTGCAGCTAAACGAATATGGAC 59.128 43.478 15.27 0.00 0.00 4.02
175 176 2.863740 TGCAGCTAAACGAATATGGACG 59.136 45.455 0.00 0.00 0.00 4.79
176 177 3.120792 GCAGCTAAACGAATATGGACGA 58.879 45.455 0.00 0.00 0.00 4.20
177 178 3.182572 GCAGCTAAACGAATATGGACGAG 59.817 47.826 0.00 0.00 0.00 4.18
178 179 3.736252 CAGCTAAACGAATATGGACGAGG 59.264 47.826 0.00 0.00 0.00 4.63
179 180 3.057734 GCTAAACGAATATGGACGAGGG 58.942 50.000 0.00 0.00 0.00 4.30
180 181 3.492137 GCTAAACGAATATGGACGAGGGT 60.492 47.826 0.00 0.00 0.00 4.34
181 182 2.884894 AACGAATATGGACGAGGGTC 57.115 50.000 0.00 0.00 42.66 4.46
182 183 2.068834 ACGAATATGGACGAGGGTCT 57.931 50.000 0.00 0.00 42.97 3.85
183 184 1.681793 ACGAATATGGACGAGGGTCTG 59.318 52.381 0.00 0.00 42.97 3.51
184 185 1.000163 CGAATATGGACGAGGGTCTGG 60.000 57.143 0.00 0.00 42.97 3.86
185 186 2.317040 GAATATGGACGAGGGTCTGGA 58.683 52.381 0.00 0.00 42.97 3.86
186 187 1.705873 ATATGGACGAGGGTCTGGAC 58.294 55.000 0.00 0.00 42.97 4.02
197 198 2.840974 GTCTGGACCATGACAACCG 58.159 57.895 15.25 0.00 33.75 4.44
198 199 0.034896 GTCTGGACCATGACAACCGT 59.965 55.000 15.25 0.00 33.75 4.83
199 200 0.034756 TCTGGACCATGACAACCGTG 59.965 55.000 0.00 0.00 0.00 4.94
203 204 3.981308 CCATGACAACCGTGGGAC 58.019 61.111 0.00 0.00 46.09 4.46
204 205 2.032634 CCATGACAACCGTGGGACG 61.033 63.158 0.00 0.00 46.09 4.79
205 206 2.358247 ATGACAACCGTGGGACGC 60.358 61.111 0.00 0.00 40.91 5.19
217 218 4.409218 GGACGCGCGGTGACTGTA 62.409 66.667 35.22 0.00 0.00 2.74
218 219 3.170585 GACGCGCGGTGACTGTAC 61.171 66.667 35.22 9.31 0.00 2.90
224 225 4.789075 CGGTGACTGTACGCGGGG 62.789 72.222 12.47 0.00 0.00 5.73
251 252 2.754658 CCACGAGGTACGAGGCCT 60.755 66.667 3.86 3.86 44.49 5.19
252 253 2.490217 CACGAGGTACGAGGCCTG 59.510 66.667 12.00 5.11 45.77 4.85
253 254 2.044555 CACGAGGTACGAGGCCTGA 61.045 63.158 12.00 0.00 45.77 3.86
254 255 2.045131 ACGAGGTACGAGGCCTGAC 61.045 63.158 12.00 5.04 45.77 3.51
255 256 2.799371 GAGGTACGAGGCCTGACG 59.201 66.667 12.00 12.03 36.29 4.35
256 257 2.035312 AGGTACGAGGCCTGACGT 59.965 61.111 21.58 21.58 44.72 4.34
257 258 0.745845 GAGGTACGAGGCCTGACGTA 60.746 60.000 19.65 19.65 42.61 3.57
258 259 0.106819 AGGTACGAGGCCTGACGTAT 60.107 55.000 24.50 11.03 44.50 3.06
259 260 0.030369 GGTACGAGGCCTGACGTATG 59.970 60.000 24.50 3.71 44.50 2.39
260 261 0.030369 GTACGAGGCCTGACGTATGG 59.970 60.000 24.50 0.00 44.50 2.74
261 262 1.105167 TACGAGGCCTGACGTATGGG 61.105 60.000 19.65 2.99 42.61 4.00
262 263 2.822399 GAGGCCTGACGTATGGGG 59.178 66.667 12.00 0.68 0.00 4.96
263 264 3.462199 GAGGCCTGACGTATGGGGC 62.462 68.421 12.00 16.10 44.57 5.80
264 265 3.792736 GGCCTGACGTATGGGGCA 61.793 66.667 18.04 0.00 45.68 5.36
265 266 2.510906 GCCTGACGTATGGGGCAT 59.489 61.111 13.29 0.00 43.59 4.40
266 267 1.893808 GCCTGACGTATGGGGCATG 60.894 63.158 13.29 0.00 43.59 4.06
267 268 1.526887 CCTGACGTATGGGGCATGT 59.473 57.895 0.00 0.00 0.00 3.21
268 269 0.815213 CCTGACGTATGGGGCATGTG 60.815 60.000 0.00 0.00 0.00 3.21
269 270 0.815213 CTGACGTATGGGGCATGTGG 60.815 60.000 0.00 0.00 0.00 4.17
270 271 1.525995 GACGTATGGGGCATGTGGG 60.526 63.158 0.00 0.00 0.00 4.61
271 272 2.906897 CGTATGGGGCATGTGGGC 60.907 66.667 0.00 0.00 42.44 5.36
272 273 2.906897 GTATGGGGCATGTGGGCG 60.907 66.667 0.00 0.00 44.56 6.13
273 274 3.415983 TATGGGGCATGTGGGCGT 61.416 61.111 0.00 0.00 44.56 5.68
274 275 2.990083 TATGGGGCATGTGGGCGTT 61.990 57.895 0.00 0.00 44.56 4.84
275 276 1.636769 TATGGGGCATGTGGGCGTTA 61.637 55.000 0.00 0.00 44.56 3.18
276 277 2.123897 GGGGCATGTGGGCGTTAT 60.124 61.111 0.00 0.00 44.56 1.89
277 278 2.193536 GGGGCATGTGGGCGTTATC 61.194 63.158 0.00 0.00 44.56 1.75
278 279 1.152963 GGGCATGTGGGCGTTATCT 60.153 57.895 0.00 0.00 44.56 1.98
279 280 0.107831 GGGCATGTGGGCGTTATCTA 59.892 55.000 0.00 0.00 44.56 1.98
280 281 1.271379 GGGCATGTGGGCGTTATCTAT 60.271 52.381 0.00 0.00 44.56 1.98
281 282 2.504367 GGCATGTGGGCGTTATCTATT 58.496 47.619 0.00 0.00 33.57 1.73
282 283 2.884639 GGCATGTGGGCGTTATCTATTT 59.115 45.455 0.00 0.00 33.57 1.40
283 284 3.058224 GGCATGTGGGCGTTATCTATTTC 60.058 47.826 0.00 0.00 33.57 2.17
284 285 3.363970 GCATGTGGGCGTTATCTATTTCG 60.364 47.826 0.00 0.00 0.00 3.46
285 286 2.206750 TGTGGGCGTTATCTATTTCGC 58.793 47.619 0.00 0.00 46.42 4.70
289 290 2.943843 GCGTTATCTATTTCGCCCAC 57.056 50.000 0.00 0.00 42.33 4.61
290 291 2.206750 GCGTTATCTATTTCGCCCACA 58.793 47.619 0.00 0.00 42.33 4.17
291 292 2.033151 GCGTTATCTATTTCGCCCACAC 60.033 50.000 0.00 0.00 42.33 3.82
292 293 2.217847 CGTTATCTATTTCGCCCACACG 59.782 50.000 0.00 0.00 0.00 4.49
293 294 1.860676 TATCTATTTCGCCCACACGC 58.139 50.000 0.00 0.00 0.00 5.34
294 295 0.107897 ATCTATTTCGCCCACACGCA 60.108 50.000 0.00 0.00 0.00 5.24
295 296 1.017177 TCTATTTCGCCCACACGCAC 61.017 55.000 0.00 0.00 0.00 5.34
296 297 2.291508 CTATTTCGCCCACACGCACG 62.292 60.000 0.00 0.00 0.00 5.34
311 312 2.885861 ACGCGTGTGAGAGGGATC 59.114 61.111 12.93 0.00 0.00 3.36
312 313 2.278206 CGCGTGTGAGAGGGATCG 60.278 66.667 0.00 0.00 0.00 3.69
313 314 2.105128 GCGTGTGAGAGGGATCGG 59.895 66.667 0.00 0.00 0.00 4.18
314 315 2.808315 CGTGTGAGAGGGATCGGG 59.192 66.667 0.00 0.00 0.00 5.14
315 316 1.753078 CGTGTGAGAGGGATCGGGA 60.753 63.158 0.00 0.00 0.00 5.14
316 317 1.729470 CGTGTGAGAGGGATCGGGAG 61.729 65.000 0.00 0.00 0.00 4.30
317 318 1.075970 TGTGAGAGGGATCGGGAGG 60.076 63.158 0.00 0.00 0.00 4.30
318 319 1.230497 GTGAGAGGGATCGGGAGGA 59.770 63.158 0.00 0.00 0.00 3.71
319 320 0.397254 GTGAGAGGGATCGGGAGGAA 60.397 60.000 0.00 0.00 0.00 3.36
320 321 0.338467 TGAGAGGGATCGGGAGGAAA 59.662 55.000 0.00 0.00 0.00 3.13
321 322 1.273609 TGAGAGGGATCGGGAGGAAAA 60.274 52.381 0.00 0.00 0.00 2.29
322 323 1.838077 GAGAGGGATCGGGAGGAAAAA 59.162 52.381 0.00 0.00 0.00 1.94
345 346 6.639632 AAAAGATGTGTGAGCATTACTTGT 57.360 33.333 0.00 0.00 0.00 3.16
346 347 6.639632 AAAGATGTGTGAGCATTACTTGTT 57.360 33.333 0.00 0.00 0.00 2.83
347 348 6.639632 AAGATGTGTGAGCATTACTTGTTT 57.360 33.333 0.00 0.00 0.00 2.83
348 349 6.639632 AGATGTGTGAGCATTACTTGTTTT 57.360 33.333 0.00 0.00 0.00 2.43
349 350 6.441274 AGATGTGTGAGCATTACTTGTTTTG 58.559 36.000 0.00 0.00 0.00 2.44
350 351 4.358851 TGTGTGAGCATTACTTGTTTTGC 58.641 39.130 0.00 0.00 35.34 3.68
355 356 4.773323 AGCATTACTTGTTTTGCTCCTC 57.227 40.909 4.89 0.00 41.38 3.71
356 357 4.401925 AGCATTACTTGTTTTGCTCCTCT 58.598 39.130 4.89 0.00 41.38 3.69
357 358 4.829492 AGCATTACTTGTTTTGCTCCTCTT 59.171 37.500 4.89 0.00 41.38 2.85
358 359 6.003950 AGCATTACTTGTTTTGCTCCTCTTA 58.996 36.000 4.89 0.00 41.38 2.10
359 360 6.072452 AGCATTACTTGTTTTGCTCCTCTTAC 60.072 38.462 4.89 0.00 41.38 2.34
360 361 6.293955 GCATTACTTGTTTTGCTCCTCTTACA 60.294 38.462 0.00 0.00 32.41 2.41
361 362 6.613755 TTACTTGTTTTGCTCCTCTTACAC 57.386 37.500 0.00 0.00 0.00 2.90
362 363 4.523083 ACTTGTTTTGCTCCTCTTACACA 58.477 39.130 0.00 0.00 0.00 3.72
363 364 4.335594 ACTTGTTTTGCTCCTCTTACACAC 59.664 41.667 0.00 0.00 0.00 3.82
364 365 3.211045 TGTTTTGCTCCTCTTACACACC 58.789 45.455 0.00 0.00 0.00 4.16
365 366 3.211045 GTTTTGCTCCTCTTACACACCA 58.789 45.455 0.00 0.00 0.00 4.17
366 367 2.543777 TTGCTCCTCTTACACACCAC 57.456 50.000 0.00 0.00 0.00 4.16
367 368 1.419381 TGCTCCTCTTACACACCACA 58.581 50.000 0.00 0.00 0.00 4.17
368 369 1.977854 TGCTCCTCTTACACACCACAT 59.022 47.619 0.00 0.00 0.00 3.21
369 370 3.169908 TGCTCCTCTTACACACCACATA 58.830 45.455 0.00 0.00 0.00 2.29
370 371 3.580895 TGCTCCTCTTACACACCACATAA 59.419 43.478 0.00 0.00 0.00 1.90
371 372 4.041075 TGCTCCTCTTACACACCACATAAA 59.959 41.667 0.00 0.00 0.00 1.40
372 373 5.001232 GCTCCTCTTACACACCACATAAAA 58.999 41.667 0.00 0.00 0.00 1.52
373 374 5.648092 GCTCCTCTTACACACCACATAAAAT 59.352 40.000 0.00 0.00 0.00 1.82
374 375 6.403636 GCTCCTCTTACACACCACATAAAATG 60.404 42.308 0.00 0.00 0.00 2.32
375 376 6.539173 TCCTCTTACACACCACATAAAATGT 58.461 36.000 0.00 0.00 46.22 2.71
386 387 4.001618 ACATAAAATGTGTGGGCAAACC 57.998 40.909 0.00 0.00 43.01 3.27
396 397 4.390048 GGCAAACCCTCTAACGCA 57.610 55.556 0.00 0.00 0.00 5.24
397 398 1.873863 GGCAAACCCTCTAACGCAC 59.126 57.895 0.00 0.00 0.00 5.34
398 399 0.887387 GGCAAACCCTCTAACGCACA 60.887 55.000 0.00 0.00 0.00 4.57
399 400 0.237498 GCAAACCCTCTAACGCACAC 59.763 55.000 0.00 0.00 0.00 3.82
400 401 1.588674 CAAACCCTCTAACGCACACA 58.411 50.000 0.00 0.00 0.00 3.72
401 402 1.263217 CAAACCCTCTAACGCACACAC 59.737 52.381 0.00 0.00 0.00 3.82
402 403 0.466543 AACCCTCTAACGCACACACA 59.533 50.000 0.00 0.00 0.00 3.72
403 404 0.685097 ACCCTCTAACGCACACACAT 59.315 50.000 0.00 0.00 0.00 3.21
404 405 1.078709 CCCTCTAACGCACACACATG 58.921 55.000 0.00 0.00 0.00 3.21
405 406 1.608025 CCCTCTAACGCACACACATGT 60.608 52.381 0.00 0.00 40.80 3.21
416 417 2.811902 CACACATGTGGCACTTATCG 57.188 50.000 28.64 6.17 42.10 2.92
417 418 2.345876 CACACATGTGGCACTTATCGA 58.654 47.619 28.64 0.00 42.10 3.59
418 419 2.094258 CACACATGTGGCACTTATCGAC 59.906 50.000 28.64 0.00 42.10 4.20
419 420 1.324435 CACATGTGGCACTTATCGACG 59.676 52.381 18.51 2.13 0.00 5.12
420 421 1.067142 ACATGTGGCACTTATCGACGT 60.067 47.619 19.83 2.78 0.00 4.34
421 422 1.588404 CATGTGGCACTTATCGACGTC 59.412 52.381 19.83 5.18 0.00 4.34
422 423 0.108992 TGTGGCACTTATCGACGTCC 60.109 55.000 19.83 0.00 0.00 4.79
423 424 0.172803 GTGGCACTTATCGACGTCCT 59.827 55.000 11.13 0.00 0.00 3.85
424 425 0.892755 TGGCACTTATCGACGTCCTT 59.107 50.000 10.58 0.00 0.00 3.36
425 426 2.093890 TGGCACTTATCGACGTCCTTA 58.906 47.619 10.58 0.00 0.00 2.69
426 427 2.492881 TGGCACTTATCGACGTCCTTAA 59.507 45.455 10.58 7.27 0.00 1.85
427 428 3.056678 TGGCACTTATCGACGTCCTTAAA 60.057 43.478 10.58 0.00 0.00 1.52
428 429 3.928375 GGCACTTATCGACGTCCTTAAAA 59.072 43.478 10.58 0.00 0.00 1.52
429 430 4.389687 GGCACTTATCGACGTCCTTAAAAA 59.610 41.667 10.58 0.00 0.00 1.94
479 480 1.294659 GCGTGGCTCACCTTCTCTTG 61.295 60.000 0.50 0.00 36.63 3.02
480 481 0.671781 CGTGGCTCACCTTCTCTTGG 60.672 60.000 0.50 0.00 36.63 3.61
582 591 4.157958 GGAGGACGACGACGACGG 62.158 72.222 22.36 6.21 44.46 4.79
677 790 2.365582 ACCATCGCTGAATACCCAAAC 58.634 47.619 0.00 0.00 0.00 2.93
678 791 1.676006 CCATCGCTGAATACCCAAACC 59.324 52.381 0.00 0.00 0.00 3.27
679 792 2.364632 CATCGCTGAATACCCAAACCA 58.635 47.619 0.00 0.00 0.00 3.67
691 812 1.253100 CCAAACCATACCACCACCAC 58.747 55.000 0.00 0.00 0.00 4.16
697 818 3.262448 ATACCACCACCACACGCCC 62.262 63.158 0.00 0.00 0.00 6.13
702 823 1.095228 CACCACCACACGCCCATATC 61.095 60.000 0.00 0.00 0.00 1.63
705 826 0.107703 CACCACACGCCCATATCTGT 60.108 55.000 0.00 0.00 0.00 3.41
810 938 2.571757 CACACCGCTCGCTCCTTA 59.428 61.111 0.00 0.00 0.00 2.69
844 972 2.031465 GGCCCGGTCGTTCTTCAA 59.969 61.111 0.00 0.00 0.00 2.69
856 984 4.669728 GTCGTTCTTCAACCGTATCTATCG 59.330 45.833 0.00 0.00 0.00 2.92
860 988 5.624344 TCTTCAACCGTATCTATCGATCC 57.376 43.478 0.00 0.00 0.00 3.36
861 989 5.067954 TCTTCAACCGTATCTATCGATCCA 58.932 41.667 0.00 0.00 0.00 3.41
862 990 5.710567 TCTTCAACCGTATCTATCGATCCAT 59.289 40.000 0.00 0.00 0.00 3.41
863 991 5.562506 TCAACCGTATCTATCGATCCATC 57.437 43.478 0.00 0.00 0.00 3.51
870 998 5.451103 CGTATCTATCGATCCATCAGGCAAT 60.451 44.000 0.00 0.00 33.74 3.56
876 1004 2.512705 GATCCATCAGGCAATCCTTCC 58.487 52.381 0.00 0.00 41.93 3.46
910 1038 2.180276 CTCCCTATCCTACCCAATCCG 58.820 57.143 0.00 0.00 0.00 4.18
911 1039 1.506418 TCCCTATCCTACCCAATCCGT 59.494 52.381 0.00 0.00 0.00 4.69
930 1062 1.042229 TACACACACTAGCCAACGGT 58.958 50.000 0.00 0.00 0.00 4.83
972 1856 0.382515 GCTCGATCTTCTACGTGGCT 59.617 55.000 0.00 0.00 0.00 4.75
975 1859 3.668491 GCTCGATCTTCTACGTGGCTATC 60.668 52.174 0.00 0.00 0.00 2.08
998 1882 1.013596 CACACGTGCTCCAACTTCAA 58.986 50.000 17.22 0.00 0.00 2.69
1275 2171 3.450115 GTCGTGGTCTCCTCCCCG 61.450 72.222 0.00 0.00 0.00 5.73
1491 2387 2.673200 GCAGCAGGAGGTCATGGGA 61.673 63.158 0.00 0.00 0.00 4.37
1560 2478 1.299014 CGAGCTCGTCATCAGCCTC 60.299 63.158 27.79 0.00 37.63 4.70
1863 2792 2.753296 CTCTCGATCTTCAAGGATGGC 58.247 52.381 0.00 0.00 0.00 4.40
1931 2860 5.642063 TCTTGGTAATTCGATCAAGAACCAC 59.358 40.000 2.07 0.00 41.48 4.16
1932 2861 3.930229 TGGTAATTCGATCAAGAACCACG 59.070 43.478 0.00 0.00 30.95 4.94
2179 3184 0.823460 CTTGAGGAGGAGCTGGAGAC 59.177 60.000 0.00 0.00 0.00 3.36
2180 3185 0.115152 TTGAGGAGGAGCTGGAGACA 59.885 55.000 0.00 0.00 39.59 3.41
2285 3293 4.873129 CGGCTGCACGGCTACGAT 62.873 66.667 0.50 0.00 44.60 3.73
2370 3378 3.352338 GACGCCGATGAGTTCCGGT 62.352 63.158 0.00 0.00 46.84 5.28
2405 3413 0.547712 ACAGGGCCATGGACTACAGT 60.548 55.000 23.35 8.24 0.00 3.55
2470 3478 2.203153 CCCCGGTATCGCCTTTGG 60.203 66.667 0.00 0.00 34.25 3.28
2523 3531 5.436175 ACATGATGTACCATTTCGATTGGA 58.564 37.500 18.85 0.66 37.69 3.53
2526 3534 5.436175 TGATGTACCATTTCGATTGGATGT 58.564 37.500 18.85 2.74 37.69 3.06
2531 3539 2.428171 CCATTTCGATTGGATGTTGCCT 59.572 45.455 8.83 0.00 36.26 4.75
2534 3542 2.028420 TCGATTGGATGTTGCCTGAG 57.972 50.000 0.00 0.00 0.00 3.35
2582 3590 2.357034 GAGTCCAACGGCTTCGCA 60.357 61.111 0.00 0.00 37.41 5.10
2588 3596 4.626081 AACGGCTTCGCACCTGCT 62.626 61.111 0.00 0.00 39.32 4.24
2592 3600 2.394563 GGCTTCGCACCTGCTCTTC 61.395 63.158 0.00 0.00 39.32 2.87
2624 3632 2.861462 TCCTTGTCGCAAAACCTTTG 57.139 45.000 0.00 0.00 0.00 2.77
2681 3693 9.330063 CCACCGATCTTACTACCGTATATTATA 57.670 37.037 0.00 0.00 0.00 0.98
2727 3739 1.760029 GAAGGCTCTAGGGTGAAGGAG 59.240 57.143 0.00 0.00 0.00 3.69
2780 3799 3.788135 GCGAGTCACGTAGAAGTATCCAC 60.788 52.174 0.00 0.00 44.60 4.02
2851 3871 5.991606 TGGAGACTATGAAGACACAAGTTTG 59.008 40.000 0.00 0.00 0.00 2.93
3373 4393 4.880886 TTATTCGTCGGTAAGTCATCGA 57.119 40.909 0.00 0.00 0.00 3.59
3387 4407 2.470628 GTCATCGATCTCTCGTGCAATG 59.529 50.000 0.00 0.00 45.25 2.82
3397 4417 4.818005 TCTCTCGTGCAATGCAATATGATT 59.182 37.500 10.44 0.00 41.47 2.57
3431 4451 1.423395 GAATCATCGCGGATGTCCTC 58.577 55.000 6.13 4.38 40.55 3.71
3493 4513 6.936900 CCAATAGTTTGATACGATCCATCCTT 59.063 38.462 0.00 0.00 34.60 3.36
3519 4539 6.289064 CCCAGATGGTATAACTTTGGAGTAC 58.711 44.000 7.18 0.00 34.21 2.73
3598 4618 9.090692 GACCATTGGAAATGAAATCAAATGTAG 57.909 33.333 10.37 0.00 36.77 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.076863 CCACTAACACTAGGCAGTTGC 58.923 52.381 7.49 0.00 41.14 4.17
6 7 2.038557 ACCCACTAACACTAGGCAGTTG 59.961 50.000 7.49 0.00 30.46 3.16
7 8 2.038557 CACCCACTAACACTAGGCAGTT 59.961 50.000 0.00 0.00 30.46 3.16
8 9 1.623811 CACCCACTAACACTAGGCAGT 59.376 52.381 0.00 0.00 34.42 4.40
9 10 1.066143 CCACCCACTAACACTAGGCAG 60.066 57.143 0.00 0.00 0.00 4.85
10 11 0.981183 CCACCCACTAACACTAGGCA 59.019 55.000 0.00 0.00 0.00 4.75
11 12 0.392595 GCCACCCACTAACACTAGGC 60.393 60.000 0.00 0.00 0.00 3.93
12 13 0.981183 TGCCACCCACTAACACTAGG 59.019 55.000 0.00 0.00 0.00 3.02
13 14 2.038557 AGTTGCCACCCACTAACACTAG 59.961 50.000 0.00 0.00 0.00 2.57
14 15 2.038033 GAGTTGCCACCCACTAACACTA 59.962 50.000 0.00 0.00 0.00 2.74
15 16 0.843984 AGTTGCCACCCACTAACACT 59.156 50.000 0.00 0.00 0.00 3.55
16 17 1.235724 GAGTTGCCACCCACTAACAC 58.764 55.000 0.00 0.00 0.00 3.32
17 18 0.109723 GGAGTTGCCACCCACTAACA 59.890 55.000 0.00 0.00 36.34 2.41
18 19 0.400594 AGGAGTTGCCACCCACTAAC 59.599 55.000 0.00 0.00 40.02 2.34
19 20 2.032965 TAGGAGTTGCCACCCACTAA 57.967 50.000 0.00 0.00 40.02 2.24
20 21 2.032965 TTAGGAGTTGCCACCCACTA 57.967 50.000 0.00 0.00 40.02 2.74
21 22 1.073923 CTTTAGGAGTTGCCACCCACT 59.926 52.381 0.00 0.00 40.02 4.00
22 23 1.202891 ACTTTAGGAGTTGCCACCCAC 60.203 52.381 0.00 0.00 40.02 4.61
23 24 1.145571 ACTTTAGGAGTTGCCACCCA 58.854 50.000 0.00 0.00 40.02 4.51
24 25 2.287977 AACTTTAGGAGTTGCCACCC 57.712 50.000 0.00 0.00 46.66 4.61
32 33 5.774690 TGCCATGATTTCAAACTTTAGGAGT 59.225 36.000 0.00 0.00 41.47 3.85
33 34 6.271488 TGCCATGATTTCAAACTTTAGGAG 57.729 37.500 0.00 0.00 0.00 3.69
34 35 6.267471 AGTTGCCATGATTTCAAACTTTAGGA 59.733 34.615 0.00 0.00 0.00 2.94
35 36 6.366877 CAGTTGCCATGATTTCAAACTTTAGG 59.633 38.462 0.00 0.00 0.00 2.69
36 37 6.128742 GCAGTTGCCATGATTTCAAACTTTAG 60.129 38.462 0.00 0.00 34.31 1.85
37 38 5.695816 GCAGTTGCCATGATTTCAAACTTTA 59.304 36.000 0.00 0.00 34.31 1.85
38 39 4.512571 GCAGTTGCCATGATTTCAAACTTT 59.487 37.500 0.00 0.00 34.31 2.66
39 40 4.060205 GCAGTTGCCATGATTTCAAACTT 58.940 39.130 0.00 0.00 34.31 2.66
40 41 3.069872 TGCAGTTGCCATGATTTCAAACT 59.930 39.130 1.06 0.00 41.18 2.66
41 42 3.391965 TGCAGTTGCCATGATTTCAAAC 58.608 40.909 1.06 0.00 41.18 2.93
42 43 3.069872 ACTGCAGTTGCCATGATTTCAAA 59.930 39.130 15.25 0.00 41.18 2.69
43 44 2.629137 ACTGCAGTTGCCATGATTTCAA 59.371 40.909 15.25 0.00 41.18 2.69
44 45 2.241160 ACTGCAGTTGCCATGATTTCA 58.759 42.857 15.25 0.00 41.18 2.69
45 46 3.691118 TCTACTGCAGTTGCCATGATTTC 59.309 43.478 27.06 0.00 41.18 2.17
46 47 3.441572 GTCTACTGCAGTTGCCATGATTT 59.558 43.478 27.06 0.00 41.18 2.17
47 48 3.012518 GTCTACTGCAGTTGCCATGATT 58.987 45.455 27.06 0.00 41.18 2.57
48 49 2.636830 GTCTACTGCAGTTGCCATGAT 58.363 47.619 27.06 0.00 41.18 2.45
49 50 1.339055 GGTCTACTGCAGTTGCCATGA 60.339 52.381 27.06 10.89 41.18 3.07
50 51 1.089920 GGTCTACTGCAGTTGCCATG 58.910 55.000 27.06 8.76 41.18 3.66
51 52 0.692476 TGGTCTACTGCAGTTGCCAT 59.308 50.000 27.06 0.12 41.18 4.40
52 53 0.472044 TTGGTCTACTGCAGTTGCCA 59.528 50.000 27.06 27.08 41.18 4.92
53 54 1.266989 GTTTGGTCTACTGCAGTTGCC 59.733 52.381 27.06 25.05 41.18 4.52
54 55 1.266989 GGTTTGGTCTACTGCAGTTGC 59.733 52.381 27.06 17.71 42.50 4.17
55 56 2.571212 TGGTTTGGTCTACTGCAGTTG 58.429 47.619 27.06 23.41 0.00 3.16
56 57 3.508845 ATGGTTTGGTCTACTGCAGTT 57.491 42.857 27.06 9.41 0.00 3.16
57 58 3.326588 TGTATGGTTTGGTCTACTGCAGT 59.673 43.478 25.12 25.12 0.00 4.40
58 59 3.937814 TGTATGGTTTGGTCTACTGCAG 58.062 45.455 13.48 13.48 0.00 4.41
59 60 4.260985 CATGTATGGTTTGGTCTACTGCA 58.739 43.478 0.00 0.00 0.00 4.41
60 61 3.627577 CCATGTATGGTTTGGTCTACTGC 59.372 47.826 2.66 0.00 43.05 4.40
84 85 1.338973 CATGGTTGCTCAACTGCAGTT 59.661 47.619 26.36 26.36 44.27 3.16
85 86 0.956633 CATGGTTGCTCAACTGCAGT 59.043 50.000 15.25 15.25 44.27 4.40
86 87 0.242825 CCATGGTTGCTCAACTGCAG 59.757 55.000 13.48 13.48 44.27 4.41
87 88 1.808531 GCCATGGTTGCTCAACTGCA 61.809 55.000 14.67 3.93 40.94 4.41
88 89 1.080298 GCCATGGTTGCTCAACTGC 60.080 57.895 14.67 6.92 40.94 4.40
89 90 0.675083 TTGCCATGGTTGCTCAACTG 59.325 50.000 14.67 4.33 40.94 3.16
90 91 0.675633 GTTGCCATGGTTGCTCAACT 59.324 50.000 19.25 0.00 40.94 3.16
91 92 0.675633 AGTTGCCATGGTTGCTCAAC 59.324 50.000 19.02 19.02 40.45 3.18
92 93 0.675083 CAGTTGCCATGGTTGCTCAA 59.325 50.000 14.67 5.59 0.00 3.02
93 94 0.467844 ACAGTTGCCATGGTTGCTCA 60.468 50.000 14.67 0.00 0.00 4.26
94 95 1.470098 CTACAGTTGCCATGGTTGCTC 59.530 52.381 14.67 0.00 0.00 4.26
95 96 1.202927 ACTACAGTTGCCATGGTTGCT 60.203 47.619 14.67 5.95 0.00 3.91
96 97 1.247567 ACTACAGTTGCCATGGTTGC 58.752 50.000 14.67 3.52 0.00 4.17
107 108 1.610624 CCATGTCGGGCAACTACAGTT 60.611 52.381 0.00 0.00 39.12 3.16
108 109 0.036388 CCATGTCGGGCAACTACAGT 60.036 55.000 0.00 0.00 36.21 3.55
109 110 2.767536 CCATGTCGGGCAACTACAG 58.232 57.895 0.00 0.00 36.21 2.74
118 119 2.359354 TTCGGTTGCCATGTCGGG 60.359 61.111 0.00 0.00 34.06 5.14
119 120 1.234615 AACTTCGGTTGCCATGTCGG 61.235 55.000 0.00 0.00 36.72 4.79
120 121 0.165944 GAACTTCGGTTGCCATGTCG 59.834 55.000 0.00 0.00 38.41 4.35
121 122 1.197721 CTGAACTTCGGTTGCCATGTC 59.802 52.381 0.00 0.00 38.41 3.06
122 123 1.238439 CTGAACTTCGGTTGCCATGT 58.762 50.000 0.00 0.00 38.41 3.21
123 124 0.109597 GCTGAACTTCGGTTGCCATG 60.110 55.000 0.00 0.00 38.41 3.66
124 125 1.577328 CGCTGAACTTCGGTTGCCAT 61.577 55.000 0.00 0.00 38.41 4.40
125 126 2.250939 CGCTGAACTTCGGTTGCCA 61.251 57.895 0.00 0.00 38.41 4.92
126 127 1.959226 TCGCTGAACTTCGGTTGCC 60.959 57.895 0.00 0.00 38.41 4.52
127 128 1.204312 GTCGCTGAACTTCGGTTGC 59.796 57.895 0.00 0.00 38.41 4.17
128 129 1.136252 CATGTCGCTGAACTTCGGTTG 60.136 52.381 0.00 0.00 38.41 3.77
129 130 1.148310 CATGTCGCTGAACTTCGGTT 58.852 50.000 0.00 0.00 41.38 4.44
130 131 0.670546 CCATGTCGCTGAACTTCGGT 60.671 55.000 0.00 0.00 0.00 4.69
131 132 1.970917 GCCATGTCGCTGAACTTCGG 61.971 60.000 0.00 0.00 0.00 4.30
132 133 1.291184 TGCCATGTCGCTGAACTTCG 61.291 55.000 0.00 0.00 0.00 3.79
133 134 0.874390 TTGCCATGTCGCTGAACTTC 59.126 50.000 0.00 0.00 0.00 3.01
134 135 0.593128 GTTGCCATGTCGCTGAACTT 59.407 50.000 0.00 0.00 0.00 2.66
135 136 0.250467 AGTTGCCATGTCGCTGAACT 60.250 50.000 0.00 0.00 0.00 3.01
136 137 0.110056 CAGTTGCCATGTCGCTGAAC 60.110 55.000 0.00 0.00 0.00 3.18
137 138 1.855213 GCAGTTGCCATGTCGCTGAA 61.855 55.000 2.90 0.00 34.31 3.02
138 139 2.327343 GCAGTTGCCATGTCGCTGA 61.327 57.895 2.90 0.00 34.31 4.26
139 140 2.177531 GCAGTTGCCATGTCGCTG 59.822 61.111 0.00 0.00 34.31 5.18
140 141 2.281692 TGCAGTTGCCATGTCGCT 60.282 55.556 1.06 0.00 41.18 4.93
141 142 2.177531 CTGCAGTTGCCATGTCGC 59.822 61.111 5.25 0.00 41.18 5.19
142 143 1.020861 TAGCTGCAGTTGCCATGTCG 61.021 55.000 16.64 0.00 41.18 4.35
143 144 1.167851 TTAGCTGCAGTTGCCATGTC 58.832 50.000 16.64 0.00 41.18 3.06
144 145 1.270550 GTTTAGCTGCAGTTGCCATGT 59.729 47.619 16.64 0.00 41.18 3.21
145 146 1.730121 CGTTTAGCTGCAGTTGCCATG 60.730 52.381 16.64 0.00 41.18 3.66
146 147 0.523072 CGTTTAGCTGCAGTTGCCAT 59.477 50.000 16.64 0.00 41.18 4.40
147 148 0.533978 TCGTTTAGCTGCAGTTGCCA 60.534 50.000 16.64 0.00 41.18 4.92
148 149 0.591170 TTCGTTTAGCTGCAGTTGCC 59.409 50.000 16.64 0.00 41.18 4.52
149 150 2.619013 ATTCGTTTAGCTGCAGTTGC 57.381 45.000 16.64 1.14 42.50 4.17
150 151 4.332543 TCCATATTCGTTTAGCTGCAGTTG 59.667 41.667 16.64 0.00 0.00 3.16
151 152 4.332819 GTCCATATTCGTTTAGCTGCAGTT 59.667 41.667 16.64 12.62 0.00 3.16
152 153 3.871594 GTCCATATTCGTTTAGCTGCAGT 59.128 43.478 16.64 4.79 0.00 4.40
153 154 3.060272 CGTCCATATTCGTTTAGCTGCAG 60.060 47.826 10.11 10.11 0.00 4.41
154 155 2.863740 CGTCCATATTCGTTTAGCTGCA 59.136 45.455 1.02 0.00 0.00 4.41
155 156 3.120792 TCGTCCATATTCGTTTAGCTGC 58.879 45.455 0.00 0.00 0.00 5.25
156 157 3.736252 CCTCGTCCATATTCGTTTAGCTG 59.264 47.826 0.00 0.00 0.00 4.24
157 158 3.243771 CCCTCGTCCATATTCGTTTAGCT 60.244 47.826 0.00 0.00 0.00 3.32
158 159 3.057734 CCCTCGTCCATATTCGTTTAGC 58.942 50.000 0.00 0.00 0.00 3.09
159 160 4.037684 AGACCCTCGTCCATATTCGTTTAG 59.962 45.833 0.00 0.00 40.12 1.85
160 161 3.956199 AGACCCTCGTCCATATTCGTTTA 59.044 43.478 0.00 0.00 40.12 2.01
161 162 2.764572 AGACCCTCGTCCATATTCGTTT 59.235 45.455 0.00 0.00 40.12 3.60
162 163 2.100916 CAGACCCTCGTCCATATTCGTT 59.899 50.000 0.00 0.00 40.12 3.85
163 164 1.681793 CAGACCCTCGTCCATATTCGT 59.318 52.381 0.00 0.00 40.12 3.85
164 165 1.000163 CCAGACCCTCGTCCATATTCG 60.000 57.143 0.00 0.00 40.12 3.34
165 166 2.036089 GTCCAGACCCTCGTCCATATTC 59.964 54.545 0.00 0.00 40.12 1.75
166 167 2.040178 GTCCAGACCCTCGTCCATATT 58.960 52.381 0.00 0.00 40.12 1.28
167 168 1.705873 GTCCAGACCCTCGTCCATAT 58.294 55.000 0.00 0.00 40.12 1.78
168 169 0.396695 GGTCCAGACCCTCGTCCATA 60.397 60.000 5.46 0.00 45.68 2.74
169 170 1.686110 GGTCCAGACCCTCGTCCAT 60.686 63.158 5.46 0.00 45.68 3.41
170 171 2.283676 GGTCCAGACCCTCGTCCA 60.284 66.667 5.46 0.00 45.68 4.02
179 180 0.034896 ACGGTTGTCATGGTCCAGAC 59.965 55.000 12.17 12.17 35.37 3.51
180 181 0.034756 CACGGTTGTCATGGTCCAGA 59.965 55.000 0.00 0.00 0.00 3.86
181 182 0.955428 CCACGGTTGTCATGGTCCAG 60.955 60.000 0.00 0.00 0.00 3.86
182 183 1.072332 CCACGGTTGTCATGGTCCA 59.928 57.895 0.00 0.00 0.00 4.02
183 184 1.674322 CCCACGGTTGTCATGGTCC 60.674 63.158 0.00 0.00 0.00 4.46
184 185 0.953960 GTCCCACGGTTGTCATGGTC 60.954 60.000 0.00 0.00 0.00 4.02
185 186 1.072505 GTCCCACGGTTGTCATGGT 59.927 57.895 0.00 0.00 0.00 3.55
186 187 2.032634 CGTCCCACGGTTGTCATGG 61.033 63.158 0.00 0.00 38.08 3.66
187 188 2.677003 GCGTCCCACGGTTGTCATG 61.677 63.158 0.00 0.00 42.82 3.07
188 189 2.358247 GCGTCCCACGGTTGTCAT 60.358 61.111 0.00 0.00 42.82 3.06
189 190 4.953868 CGCGTCCCACGGTTGTCA 62.954 66.667 0.00 0.00 42.82 3.58
200 201 4.409218 TACAGTCACCGCGCGTCC 62.409 66.667 29.95 12.89 0.00 4.79
201 202 3.170585 GTACAGTCACCGCGCGTC 61.171 66.667 29.95 15.46 0.00 5.19
207 208 4.789075 CCCCGCGTACAGTCACCG 62.789 72.222 4.92 0.00 0.00 4.94
226 227 3.376078 TACCTCGTGGTCCCGCAC 61.376 66.667 13.38 0.00 44.78 5.34
227 228 3.376078 GTACCTCGTGGTCCCGCA 61.376 66.667 13.38 0.00 44.78 5.69
228 229 4.487412 CGTACCTCGTGGTCCCGC 62.487 72.222 13.38 1.80 44.78 6.13
229 230 2.747460 TCGTACCTCGTGGTCCCG 60.747 66.667 13.38 16.03 44.78 5.14
230 231 2.413142 CCTCGTACCTCGTGGTCCC 61.413 68.421 13.38 4.37 44.78 4.46
231 232 3.194719 CCTCGTACCTCGTGGTCC 58.805 66.667 13.38 0.00 44.78 4.46
235 236 2.044555 TCAGGCCTCGTACCTCGTG 61.045 63.158 0.00 0.00 40.80 4.35
236 237 2.045131 GTCAGGCCTCGTACCTCGT 61.045 63.158 0.00 0.00 40.80 4.18
237 238 2.799371 GTCAGGCCTCGTACCTCG 59.201 66.667 0.00 0.00 34.42 4.63
238 239 0.745845 TACGTCAGGCCTCGTACCTC 60.746 60.000 19.65 0.00 40.70 3.85
239 240 0.106819 ATACGTCAGGCCTCGTACCT 60.107 55.000 24.28 10.66 43.47 3.08
240 241 0.030369 CATACGTCAGGCCTCGTACC 59.970 60.000 24.28 1.78 43.47 3.34
241 242 0.030369 CCATACGTCAGGCCTCGTAC 59.970 60.000 24.28 12.90 43.47 3.67
242 243 1.105167 CCCATACGTCAGGCCTCGTA 61.105 60.000 24.08 24.08 44.47 3.43
243 244 2.423898 CCCATACGTCAGGCCTCGT 61.424 63.158 21.58 21.58 42.82 4.18
244 245 2.417516 CCCATACGTCAGGCCTCG 59.582 66.667 0.00 7.45 0.00 4.63
245 246 2.822399 CCCCATACGTCAGGCCTC 59.178 66.667 0.00 0.00 0.00 4.70
246 247 3.480133 GCCCCATACGTCAGGCCT 61.480 66.667 0.00 0.00 39.60 5.19
247 248 3.120086 ATGCCCCATACGTCAGGCC 62.120 63.158 13.51 0.00 45.14 5.19
248 249 1.893808 CATGCCCCATACGTCAGGC 60.894 63.158 10.24 10.24 45.96 4.85
249 250 0.815213 CACATGCCCCATACGTCAGG 60.815 60.000 0.00 0.00 0.00 3.86
250 251 0.815213 CCACATGCCCCATACGTCAG 60.815 60.000 0.00 0.00 0.00 3.51
251 252 1.223211 CCACATGCCCCATACGTCA 59.777 57.895 0.00 0.00 0.00 4.35
252 253 1.525995 CCCACATGCCCCATACGTC 60.526 63.158 0.00 0.00 0.00 4.34
253 254 2.595095 CCCACATGCCCCATACGT 59.405 61.111 0.00 0.00 0.00 3.57
254 255 2.906897 GCCCACATGCCCCATACG 60.907 66.667 0.00 0.00 0.00 3.06
255 256 2.906897 CGCCCACATGCCCCATAC 60.907 66.667 0.00 0.00 0.00 2.39
256 257 1.636769 TAACGCCCACATGCCCCATA 61.637 55.000 0.00 0.00 0.00 2.74
257 258 2.296945 ATAACGCCCACATGCCCCAT 62.297 55.000 0.00 0.00 0.00 4.00
258 259 2.902423 GATAACGCCCACATGCCCCA 62.902 60.000 0.00 0.00 0.00 4.96
259 260 2.123897 ATAACGCCCACATGCCCC 60.124 61.111 0.00 0.00 0.00 5.80
260 261 0.107831 TAGATAACGCCCACATGCCC 59.892 55.000 0.00 0.00 0.00 5.36
261 262 2.185004 ATAGATAACGCCCACATGCC 57.815 50.000 0.00 0.00 0.00 4.40
262 263 3.363970 CGAAATAGATAACGCCCACATGC 60.364 47.826 0.00 0.00 0.00 4.06
263 264 3.363970 GCGAAATAGATAACGCCCACATG 60.364 47.826 0.00 0.00 44.27 3.21
264 265 2.806244 GCGAAATAGATAACGCCCACAT 59.194 45.455 0.00 0.00 44.27 3.21
265 266 2.206750 GCGAAATAGATAACGCCCACA 58.793 47.619 0.00 0.00 44.27 4.17
266 267 2.943843 GCGAAATAGATAACGCCCAC 57.056 50.000 0.00 0.00 44.27 4.61
271 272 2.217847 CGTGTGGGCGAAATAGATAACG 59.782 50.000 0.00 0.00 0.00 3.18
272 273 2.033151 GCGTGTGGGCGAAATAGATAAC 60.033 50.000 0.00 0.00 0.00 1.89
273 274 2.206750 GCGTGTGGGCGAAATAGATAA 58.793 47.619 0.00 0.00 0.00 1.75
274 275 1.137282 TGCGTGTGGGCGAAATAGATA 59.863 47.619 0.00 0.00 35.06 1.98
275 276 0.107897 TGCGTGTGGGCGAAATAGAT 60.108 50.000 0.00 0.00 35.06 1.98
276 277 1.017177 GTGCGTGTGGGCGAAATAGA 61.017 55.000 0.00 0.00 35.06 1.98
277 278 1.423845 GTGCGTGTGGGCGAAATAG 59.576 57.895 0.00 0.00 35.06 1.73
278 279 2.384309 CGTGCGTGTGGGCGAAATA 61.384 57.895 0.00 0.00 35.06 1.40
279 280 3.722295 CGTGCGTGTGGGCGAAAT 61.722 61.111 0.00 0.00 35.06 2.17
292 293 3.649277 ATCCCTCTCACACGCGTGC 62.649 63.158 37.35 0.00 43.28 5.34
293 294 1.517257 GATCCCTCTCACACGCGTG 60.517 63.158 35.99 35.99 45.08 5.34
294 295 2.885861 GATCCCTCTCACACGCGT 59.114 61.111 5.58 5.58 0.00 6.01
295 296 2.278206 CGATCCCTCTCACACGCG 60.278 66.667 3.53 3.53 0.00 6.01
296 297 2.105128 CCGATCCCTCTCACACGC 59.895 66.667 0.00 0.00 0.00 5.34
297 298 1.729470 CTCCCGATCCCTCTCACACG 61.729 65.000 0.00 0.00 0.00 4.49
298 299 1.395826 CCTCCCGATCCCTCTCACAC 61.396 65.000 0.00 0.00 0.00 3.82
299 300 1.075970 CCTCCCGATCCCTCTCACA 60.076 63.158 0.00 0.00 0.00 3.58
300 301 0.397254 TTCCTCCCGATCCCTCTCAC 60.397 60.000 0.00 0.00 0.00 3.51
301 302 0.338467 TTTCCTCCCGATCCCTCTCA 59.662 55.000 0.00 0.00 0.00 3.27
302 303 1.497161 TTTTCCTCCCGATCCCTCTC 58.503 55.000 0.00 0.00 0.00 3.20
303 304 1.966845 TTTTTCCTCCCGATCCCTCT 58.033 50.000 0.00 0.00 0.00 3.69
321 322 7.042797 ACAAGTAATGCTCACACATCTTTTT 57.957 32.000 0.00 0.00 0.00 1.94
322 323 6.639632 ACAAGTAATGCTCACACATCTTTT 57.360 33.333 0.00 0.00 0.00 2.27
323 324 6.639632 AACAAGTAATGCTCACACATCTTT 57.360 33.333 0.00 0.00 0.00 2.52
324 325 6.639632 AAACAAGTAATGCTCACACATCTT 57.360 33.333 0.00 0.00 0.00 2.40
325 326 6.441274 CAAAACAAGTAATGCTCACACATCT 58.559 36.000 0.00 0.00 0.00 2.90
326 327 5.117592 GCAAAACAAGTAATGCTCACACATC 59.882 40.000 3.69 0.00 35.93 3.06
327 328 4.984161 GCAAAACAAGTAATGCTCACACAT 59.016 37.500 3.69 0.00 35.93 3.21
328 329 4.097741 AGCAAAACAAGTAATGCTCACACA 59.902 37.500 6.78 0.00 45.49 3.72
329 330 4.610945 AGCAAAACAAGTAATGCTCACAC 58.389 39.130 6.78 0.00 45.49 3.82
330 331 4.916983 AGCAAAACAAGTAATGCTCACA 57.083 36.364 6.78 0.00 45.49 3.58
335 336 4.773323 AGAGGAGCAAAACAAGTAATGC 57.227 40.909 2.90 2.90 39.06 3.56
336 337 7.078228 GTGTAAGAGGAGCAAAACAAGTAATG 58.922 38.462 0.00 0.00 0.00 1.90
337 338 6.770785 TGTGTAAGAGGAGCAAAACAAGTAAT 59.229 34.615 0.00 0.00 0.00 1.89
338 339 6.037830 GTGTGTAAGAGGAGCAAAACAAGTAA 59.962 38.462 0.00 0.00 0.00 2.24
339 340 5.526111 GTGTGTAAGAGGAGCAAAACAAGTA 59.474 40.000 0.00 0.00 0.00 2.24
340 341 4.335594 GTGTGTAAGAGGAGCAAAACAAGT 59.664 41.667 0.00 0.00 0.00 3.16
341 342 4.261197 GGTGTGTAAGAGGAGCAAAACAAG 60.261 45.833 0.00 0.00 0.00 3.16
342 343 3.630312 GGTGTGTAAGAGGAGCAAAACAA 59.370 43.478 0.00 0.00 0.00 2.83
343 344 3.211045 GGTGTGTAAGAGGAGCAAAACA 58.789 45.455 0.00 0.00 0.00 2.83
344 345 3.003378 GTGGTGTGTAAGAGGAGCAAAAC 59.997 47.826 0.00 0.00 0.00 2.43
345 346 3.211045 GTGGTGTGTAAGAGGAGCAAAA 58.789 45.455 0.00 0.00 0.00 2.44
346 347 2.171659 TGTGGTGTGTAAGAGGAGCAAA 59.828 45.455 0.00 0.00 0.00 3.68
347 348 1.765904 TGTGGTGTGTAAGAGGAGCAA 59.234 47.619 0.00 0.00 0.00 3.91
348 349 1.419381 TGTGGTGTGTAAGAGGAGCA 58.581 50.000 0.00 0.00 0.00 4.26
349 350 2.770164 ATGTGGTGTGTAAGAGGAGC 57.230 50.000 0.00 0.00 0.00 4.70
350 351 6.655003 ACATTTTATGTGGTGTGTAAGAGGAG 59.345 38.462 0.00 0.00 43.01 3.69
351 352 6.539173 ACATTTTATGTGGTGTGTAAGAGGA 58.461 36.000 0.00 0.00 43.01 3.71
352 353 6.817765 ACATTTTATGTGGTGTGTAAGAGG 57.182 37.500 0.00 0.00 43.01 3.69
365 366 4.001618 GGTTTGCCCACACATTTTATGT 57.998 40.909 0.00 0.00 46.22 2.29
379 380 0.887387 TGTGCGTTAGAGGGTTTGCC 60.887 55.000 0.00 0.00 0.00 4.52
380 381 0.237498 GTGTGCGTTAGAGGGTTTGC 59.763 55.000 0.00 0.00 0.00 3.68
381 382 1.263217 GTGTGTGCGTTAGAGGGTTTG 59.737 52.381 0.00 0.00 0.00 2.93
382 383 1.134340 TGTGTGTGCGTTAGAGGGTTT 60.134 47.619 0.00 0.00 0.00 3.27
383 384 0.466543 TGTGTGTGCGTTAGAGGGTT 59.533 50.000 0.00 0.00 0.00 4.11
384 385 0.685097 ATGTGTGTGCGTTAGAGGGT 59.315 50.000 0.00 0.00 0.00 4.34
385 386 1.078709 CATGTGTGTGCGTTAGAGGG 58.921 55.000 0.00 0.00 0.00 4.30
386 387 1.795768 ACATGTGTGTGCGTTAGAGG 58.204 50.000 0.00 0.00 37.14 3.69
396 397 2.076100 CGATAAGTGCCACATGTGTGT 58.924 47.619 23.79 3.75 44.21 3.72
397 398 2.094258 GTCGATAAGTGCCACATGTGTG 59.906 50.000 23.79 15.96 45.23 3.82
398 399 2.346803 GTCGATAAGTGCCACATGTGT 58.653 47.619 23.79 8.06 0.00 3.72
399 400 1.324435 CGTCGATAAGTGCCACATGTG 59.676 52.381 19.31 19.31 0.00 3.21
400 401 1.067142 ACGTCGATAAGTGCCACATGT 60.067 47.619 0.00 0.00 0.00 3.21
401 402 1.588404 GACGTCGATAAGTGCCACATG 59.412 52.381 0.00 0.00 0.00 3.21
402 403 1.470979 GGACGTCGATAAGTGCCACAT 60.471 52.381 9.92 0.00 0.00 3.21
403 404 0.108992 GGACGTCGATAAGTGCCACA 60.109 55.000 9.92 0.00 0.00 4.17
404 405 0.172803 AGGACGTCGATAAGTGCCAC 59.827 55.000 9.92 0.00 0.00 5.01
405 406 0.892755 AAGGACGTCGATAAGTGCCA 59.107 50.000 9.92 0.00 0.00 4.92
406 407 2.857592 TAAGGACGTCGATAAGTGCC 57.142 50.000 9.92 0.00 0.00 5.01
407 408 5.520022 TTTTTAAGGACGTCGATAAGTGC 57.480 39.130 9.92 0.00 0.00 4.40
428 429 2.151881 TGCATGCAACGCAGATTTTT 57.848 40.000 20.30 0.00 43.65 1.94
429 430 1.996898 CATGCATGCAACGCAGATTTT 59.003 42.857 26.68 0.00 43.65 1.82
430 431 1.635844 CATGCATGCAACGCAGATTT 58.364 45.000 26.68 0.80 43.65 2.17
431 432 3.339061 CATGCATGCAACGCAGATT 57.661 47.368 26.68 1.67 43.65 2.40
581 590 2.387445 TATGCACAGCAACGTCGCC 61.387 57.895 0.00 0.00 43.62 5.54
582 591 1.225745 GTATGCACAGCAACGTCGC 60.226 57.895 0.00 0.00 43.62 5.19
620 635 2.996249 ACATGTGCTCTCCATCGATT 57.004 45.000 0.00 0.00 0.00 3.34
621 636 2.996249 AACATGTGCTCTCCATCGAT 57.004 45.000 0.00 0.00 0.00 3.59
622 637 2.028203 TGAAACATGTGCTCTCCATCGA 60.028 45.455 0.00 0.00 0.00 3.59
623 638 2.094894 GTGAAACATGTGCTCTCCATCG 59.905 50.000 0.00 0.00 36.32 3.84
677 790 2.038269 GCGTGTGGTGGTGGTATGG 61.038 63.158 0.00 0.00 0.00 2.74
678 791 2.038269 GGCGTGTGGTGGTGGTATG 61.038 63.158 0.00 0.00 0.00 2.39
679 792 2.349755 GGCGTGTGGTGGTGGTAT 59.650 61.111 0.00 0.00 0.00 2.73
691 812 1.299541 GAACCACAGATATGGGCGTG 58.700 55.000 0.00 0.00 44.81 5.34
697 818 2.863401 TCGGACGAACCACAGATATG 57.137 50.000 0.00 0.00 38.90 1.78
702 823 1.516386 CGGATCGGACGAACCACAG 60.516 63.158 18.83 1.74 36.96 3.66
705 826 3.060020 GCTCGGATCGGACGAACCA 62.060 63.158 18.83 7.22 40.16 3.67
743 864 1.945354 GAGGATGGCGACGGACAGAA 61.945 60.000 0.00 0.00 32.06 3.02
856 984 2.512705 GGAAGGATTGCCTGATGGATC 58.487 52.381 0.00 0.00 46.28 3.36
910 1038 1.269936 ACCGTTGGCTAGTGTGTGTAC 60.270 52.381 0.00 0.00 0.00 2.90
911 1039 1.042229 ACCGTTGGCTAGTGTGTGTA 58.958 50.000 0.00 0.00 0.00 2.90
930 1062 0.521291 ACTTAAGGCGTACGTGCGTA 59.479 50.000 26.31 9.22 35.06 4.42
972 1856 1.188871 TGGAGCACGTGTGTGGGATA 61.189 55.000 18.38 0.00 46.51 2.59
975 1859 2.203139 TTGGAGCACGTGTGTGGG 60.203 61.111 18.38 0.00 46.51 4.61
998 1882 1.600076 GCCATGAGCGCCATCATCT 60.600 57.895 9.03 0.00 37.84 2.90
1448 2344 2.035940 AGCGGAAGGAGTCGACCT 59.964 61.111 13.01 0.00 42.69 3.85
1491 2387 1.520787 GCGGATCCGTTCCACGAAT 60.521 57.895 33.33 0.00 46.05 3.34
1560 2478 0.034756 TGGAGATGACGGTGTTGGTG 59.965 55.000 0.00 0.00 0.00 4.17
1761 2687 3.243855 GAGCGTCTTCTCGATGACC 57.756 57.895 7.19 2.13 33.44 4.02
1863 2792 0.179045 CCAGCCTAAACCCCTGATCG 60.179 60.000 0.00 0.00 0.00 3.69
1994 2999 2.029380 TGTGAAGAATGATCGACCGTGT 60.029 45.455 0.00 0.00 0.00 4.49
1999 3004 4.495349 CCTGCAATGTGAAGAATGATCGAC 60.495 45.833 0.00 0.00 0.00 4.20
2006 3011 4.084287 ACATGTCCTGCAATGTGAAGAAT 58.916 39.130 0.96 0.00 0.00 2.40
2179 3184 1.817099 GCGTGGAGGAGGCTCATTG 60.817 63.158 17.69 2.23 32.41 2.82
2180 3185 1.992277 AGCGTGGAGGAGGCTCATT 60.992 57.895 17.69 3.37 42.21 2.57
2285 3293 2.070039 CCGGGTCTTGGCTGGGATA 61.070 63.158 0.00 0.00 0.00 2.59
2370 3378 2.182827 CCTGTCCATGAACCTCTCTGA 58.817 52.381 0.00 0.00 0.00 3.27
2588 3596 4.597507 ACAAGGATCAAAGGGTACTGAAGA 59.402 41.667 0.00 0.00 0.00 2.87
2592 3600 3.262420 CGACAAGGATCAAAGGGTACTG 58.738 50.000 0.00 0.00 0.00 2.74
2624 3632 1.005975 GTCGACACGATGCATGCTTAC 60.006 52.381 20.33 9.07 38.42 2.34
2681 3693 7.307751 CGGTATCATAGCCAAAACAACGATAAT 60.308 37.037 0.00 0.00 0.00 1.28
2682 3694 6.018588 CGGTATCATAGCCAAAACAACGATAA 60.019 38.462 0.00 0.00 0.00 1.75
2683 3695 5.464057 CGGTATCATAGCCAAAACAACGATA 59.536 40.000 0.00 0.00 0.00 2.92
2684 3696 4.272504 CGGTATCATAGCCAAAACAACGAT 59.727 41.667 0.00 0.00 0.00 3.73
2685 3697 3.619483 CGGTATCATAGCCAAAACAACGA 59.381 43.478 0.00 0.00 0.00 3.85
2720 3732 2.301296 CCAAGAAGTGCTCTCTCCTTCA 59.699 50.000 0.00 0.00 37.62 3.02
2727 3739 0.322008 CCACCCCAAGAAGTGCTCTC 60.322 60.000 0.00 0.00 31.02 3.20
2780 3799 3.368501 TCCCTCTCCCTCCCCCTG 61.369 72.222 0.00 0.00 0.00 4.45
3242 4262 7.672239 AGGTCCAATCTAGATATTGTACTCCTC 59.328 40.741 5.46 0.00 35.48 3.71
3244 4264 7.784470 AGGTCCAATCTAGATATTGTACTCC 57.216 40.000 5.46 2.74 35.48 3.85
3253 4273 6.948886 CCTAGCTTGTAGGTCCAATCTAGATA 59.051 42.308 5.46 0.00 40.84 1.98
3255 4275 5.141182 CCTAGCTTGTAGGTCCAATCTAGA 58.859 45.833 11.39 0.00 40.84 2.43
3373 4393 4.383173 TCATATTGCATTGCACGAGAGAT 58.617 39.130 11.66 3.64 38.71 2.75
3397 4417 3.937778 TGATTCCAGGAGCATGATCAA 57.062 42.857 13.85 0.00 0.00 2.57
3431 4451 1.407979 GGCTTGCATTTGGAGGAGATG 59.592 52.381 0.00 0.00 0.00 2.90
3493 4513 5.968167 ACTCCAAAGTTATACCATCTGGGTA 59.032 40.000 0.54 0.00 44.43 3.69
3508 4528 6.164176 GTGTAGTGCATTAGTACTCCAAAGT 58.836 40.000 0.00 0.00 41.21 2.66
3513 4533 4.430908 GGTGTGTAGTGCATTAGTACTCC 58.569 47.826 0.00 0.00 41.21 3.85
3514 4534 4.081862 TGGGTGTGTAGTGCATTAGTACTC 60.082 45.833 0.00 0.00 41.21 2.59
3519 4539 3.052455 TGTGGGTGTGTAGTGCATTAG 57.948 47.619 0.00 0.00 0.00 1.73
3598 4618 0.323957 AAGGTGGCGGACTAAAGGTC 59.676 55.000 0.00 0.00 43.79 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.