Multiple sequence alignment - TraesCS1D01G241700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G241700 chr1D 100.000 3565 0 0 1 3565 332265118 332268682 0.000000e+00 6584.0
1 TraesCS1D01G241700 chr1B 92.382 1864 97 22 1 1842 446950422 446952262 0.000000e+00 2614.0
2 TraesCS1D01G241700 chr1B 93.178 557 17 6 2283 2837 446952645 446953182 0.000000e+00 798.0
3 TraesCS1D01G241700 chr1B 97.222 396 9 1 1858 2251 446952249 446952644 0.000000e+00 669.0
4 TraesCS1D01G241700 chr1B 86.585 164 21 1 3053 3216 164842239 164842401 2.830000e-41 180.0
5 TraesCS1D01G241700 chr1B 85.366 164 24 0 3056 3219 401989949 401990112 1.700000e-38 171.0
6 TraesCS1D01G241700 chr1B 85.350 157 23 0 3058 3214 36285382 36285226 2.850000e-36 163.0
7 TraesCS1D01G241700 chr1B 92.537 67 2 3 2866 2931 446953186 446953250 3.790000e-15 93.5
8 TraesCS1D01G241700 chr1B 95.652 46 2 0 2241 2286 70501526 70501571 1.370000e-09 75.0
9 TraesCS1D01G241700 chr1A 87.683 1364 99 39 515 1828 430006480 430007824 0.000000e+00 1524.0
10 TraesCS1D01G241700 chr1A 86.395 1176 88 34 1893 3047 430007838 430008962 0.000000e+00 1219.0
11 TraesCS1D01G241700 chr1A 89.792 529 26 4 1 519 430005879 430006389 0.000000e+00 652.0
12 TraesCS1D01G241700 chr1A 85.890 163 22 1 3056 3218 50783921 50784082 4.730000e-39 172.0
13 TraesCS1D01G241700 chr1A 98.387 62 1 0 3217 3278 430008958 430009019 3.760000e-20 110.0
14 TraesCS1D01G241700 chr3D 93.684 285 18 0 3281 3565 24569216 24569500 9.150000e-116 427.0
15 TraesCS1D01G241700 chr3D 86.061 165 21 2 3053 3216 441645699 441645862 3.660000e-40 176.0
16 TraesCS1D01G241700 chr3D 88.000 50 6 0 2237 2286 397781608 397781559 3.840000e-05 60.2
17 TraesCS1D01G241700 chr2A 93.684 285 18 0 3281 3565 669747242 669746958 9.150000e-116 427.0
18 TraesCS1D01G241700 chr2A 93.333 285 19 0 3281 3565 537233599 537233883 4.260000e-114 422.0
19 TraesCS1D01G241700 chr7B 93.333 285 19 0 3281 3565 380072820 380073104 4.260000e-114 422.0
20 TraesCS1D01G241700 chr7B 86.310 168 21 2 3053 3219 623111179 623111013 7.860000e-42 182.0
21 TraesCS1D01G241700 chr7B 86.538 156 20 1 3056 3211 35672980 35672826 1.700000e-38 171.0
22 TraesCS1D01G241700 chr7B 95.349 43 2 0 2236 2278 94827377 94827419 6.390000e-08 69.4
23 TraesCS1D01G241700 chr3B 93.333 285 19 0 3281 3565 463483676 463483960 4.260000e-114 422.0
24 TraesCS1D01G241700 chr3B 93.333 285 19 0 3281 3565 707027353 707027069 4.260000e-114 422.0
25 TraesCS1D01G241700 chr3B 92.982 285 20 0 3281 3565 534159170 534159454 1.980000e-112 416.0
26 TraesCS1D01G241700 chrUn 92.982 285 20 0 3281 3565 136394846 136395130 1.980000e-112 416.0
27 TraesCS1D01G241700 chrUn 87.273 55 6 1 2244 2298 70193235 70193182 1.070000e-05 62.1
28 TraesCS1D01G241700 chr5D 92.982 285 20 0 3281 3565 109820806 109821090 1.980000e-112 416.0
29 TraesCS1D01G241700 chr5D 91.489 47 4 0 2237 2283 11305312 11305358 8.260000e-07 65.8
30 TraesCS1D01G241700 chr5A 88.485 165 17 2 3053 3216 267945329 267945166 7.810000e-47 198.0
31 TraesCS1D01G241700 chr5A 87.755 49 6 0 2235 2283 505496804 505496756 1.380000e-04 58.4
32 TraesCS1D01G241700 chr6D 85.714 161 22 1 3056 3216 255009479 255009638 6.120000e-38 169.0
33 TraesCS1D01G241700 chr6D 91.304 46 3 1 2237 2282 157659471 157659515 1.070000e-05 62.1
34 TraesCS1D01G241700 chr7D 89.796 49 5 0 2237 2285 151326489 151326441 2.970000e-06 63.9
35 TraesCS1D01G241700 chr6A 91.111 45 4 0 2241 2285 426639343 426639387 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G241700 chr1D 332265118 332268682 3564 False 6584.000 6584 100.00000 1 3565 1 chr1D.!!$F1 3564
1 TraesCS1D01G241700 chr1B 446950422 446953250 2828 False 1043.625 2614 93.82975 1 2931 4 chr1B.!!$F4 2930
2 TraesCS1D01G241700 chr1A 430005879 430009019 3140 False 876.250 1524 90.56425 1 3278 4 chr1A.!!$F2 3277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 659 0.035439 GGAAATGGCTGGTCGAGGAA 60.035 55.0 0.00 0.0 0.0 3.36 F
2321 2509 0.973632 TCGTGCAGGCTCTTAGGAAA 59.026 50.0 0.35 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 2668 1.166129 CGTCGGAGAAGGACTTGAGA 58.834 55.0 0.00 0.0 39.69 3.27 R
3531 3727 0.029834 CAGTGCACCAGAACAGCAAC 59.970 55.0 14.63 0.0 40.35 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 1.672881 GCTTGCAGGTGGATGTGTATC 59.327 52.381 0.00 0.00 0.00 2.24
115 116 4.744867 GCTTGCAGGTGGATGTGTATCTAT 60.745 45.833 0.00 0.00 33.68 1.98
126 127 6.493802 TGGATGTGTATCTATTACCTCAGTCC 59.506 42.308 0.00 0.00 33.68 3.85
159 160 7.995488 CCAACTGGAGGTCTATATTTCAAGAAT 59.005 37.037 0.00 0.00 37.39 2.40
228 229 6.877611 AACAACTACATAACAGGGTTTGAG 57.122 37.500 0.00 0.00 0.00 3.02
439 453 2.933495 TTCGAACACCAGATCCGTAG 57.067 50.000 0.00 0.00 0.00 3.51
451 465 3.527641 CCGTAGGCAGAGGACTCC 58.472 66.667 0.00 0.00 46.14 3.85
452 466 1.379977 CCGTAGGCAGAGGACTCCA 60.380 63.158 0.00 0.00 46.14 3.86
453 467 0.757188 CCGTAGGCAGAGGACTCCAT 60.757 60.000 0.00 0.00 46.14 3.41
454 468 1.115467 CGTAGGCAGAGGACTCCATT 58.885 55.000 0.00 0.00 31.78 3.16
550 659 0.035439 GGAAATGGCTGGTCGAGGAA 60.035 55.000 0.00 0.00 0.00 3.36
590 700 5.105635 GGCATGAATGAAGAGATTTTGTGGA 60.106 40.000 0.00 0.00 0.00 4.02
600 710 8.539544 TGAAGAGATTTTGTGGACATGAGTATA 58.460 33.333 0.00 0.00 0.00 1.47
655 765 9.278978 TCTGTATAGCATTGTAGTTTTGTGAAA 57.721 29.630 0.00 0.00 0.00 2.69
656 766 9.891828 CTGTATAGCATTGTAGTTTTGTGAAAA 57.108 29.630 0.00 0.00 0.00 2.29
909 1030 3.747976 CCCCGCTTTGCTTTCCGG 61.748 66.667 0.00 0.00 40.39 5.14
1063 1191 3.145551 CCCACCCTCCTACGTCGG 61.146 72.222 0.00 0.00 0.00 4.79
1131 1259 5.473846 AGGTATGATCATCGACGAACACTAT 59.526 40.000 12.53 0.00 0.00 2.12
1137 1265 3.562973 TCATCGACGAACACTATCTACCC 59.437 47.826 0.00 0.00 0.00 3.69
1138 1266 2.989909 TCGACGAACACTATCTACCCA 58.010 47.619 0.00 0.00 0.00 4.51
1407 1543 4.955925 TCTTCTCAAGAGTTAGAGAGCG 57.044 45.455 0.00 0.00 41.49 5.03
1516 1654 4.776435 TGGATACATGCAGGAATTCTCA 57.224 40.909 4.84 2.02 46.17 3.27
1528 1666 6.319658 TGCAGGAATTCTCATTTGATTCCTAC 59.680 38.462 14.50 10.80 46.58 3.18
1551 1689 5.084055 CGCCTTTACGGATTAAAAGTTCAC 58.916 41.667 0.00 0.00 32.02 3.18
1588 1726 4.081807 CAGGTACTACTCCCTTGGTACAAC 60.082 50.000 0.00 0.00 41.00 3.32
1631 1774 6.671614 ACAACGTTATCTCAAGTCAAACAA 57.328 33.333 0.00 0.00 0.00 2.83
1632 1775 6.483687 ACAACGTTATCTCAAGTCAAACAAC 58.516 36.000 0.00 0.00 0.00 3.32
1784 1951 9.361315 TCGTCGAAGTTATATTCTGAAAAATGA 57.639 29.630 0.00 0.00 0.00 2.57
1828 2001 3.076484 TGTACCCAAGGGAGTAGTGTAGT 59.924 47.826 13.15 0.00 38.96 2.73
1829 2002 4.292041 TGTACCCAAGGGAGTAGTGTAGTA 59.708 45.833 13.15 0.00 38.96 1.82
1830 2003 3.706183 ACCCAAGGGAGTAGTGTAGTAC 58.294 50.000 13.15 0.00 38.96 2.73
1832 2005 4.541714 ACCCAAGGGAGTAGTGTAGTACTA 59.458 45.833 13.15 0.00 38.58 1.82
1833 2006 5.015603 ACCCAAGGGAGTAGTGTAGTACTAA 59.984 44.000 13.15 0.00 39.98 2.24
1834 2007 6.134754 CCCAAGGGAGTAGTGTAGTACTAAT 58.865 44.000 3.61 0.00 42.45 1.73
1835 2008 7.091811 ACCCAAGGGAGTAGTGTAGTACTAATA 60.092 40.741 13.15 0.00 40.05 0.98
1836 2009 7.447853 CCCAAGGGAGTAGTGTAGTACTAATAG 59.552 44.444 3.61 0.00 40.05 1.73
1837 2010 7.040548 CCAAGGGAGTAGTGTAGTACTAATAGC 60.041 44.444 3.61 0.00 43.24 2.97
1838 2011 6.541907 AGGGAGTAGTGTAGTACTAATAGCC 58.458 44.000 3.61 0.64 43.24 3.93
1839 2012 6.332369 AGGGAGTAGTGTAGTACTAATAGCCT 59.668 42.308 3.61 0.00 43.24 4.58
1841 2014 7.505248 GGGAGTAGTGTAGTACTAATAGCCTTT 59.495 40.741 3.61 0.00 43.24 3.11
1842 2015 8.911965 GGAGTAGTGTAGTACTAATAGCCTTTT 58.088 37.037 3.61 0.00 43.24 2.27
1881 2054 6.313519 ACTAATAGCCTTTGGTCAGATTCA 57.686 37.500 0.00 0.00 0.00 2.57
2174 2359 5.186797 ACATAGCTTCTCAACAGAGCTTAGT 59.813 40.000 2.16 0.00 35.76 2.24
2224 2409 7.043920 TCGAAATGGCTAAAAAGAAAACGTTTC 60.044 33.333 15.01 8.08 0.00 2.78
2251 2436 8.565416 GGTGCCATCATAACTTTATACTAAACC 58.435 37.037 0.00 0.00 0.00 3.27
2273 2458 7.452880 ACCAATGTCAATTAATATGGATCGG 57.547 36.000 0.00 0.00 0.00 4.18
2275 2460 7.391554 ACCAATGTCAATTAATATGGATCGGAG 59.608 37.037 0.00 0.00 0.00 4.63
2276 2461 7.148188 CCAATGTCAATTAATATGGATCGGAGG 60.148 40.741 0.00 0.00 0.00 4.30
2279 2464 6.109359 GTCAATTAATATGGATCGGAGGGAG 58.891 44.000 0.00 0.00 0.00 4.30
2280 2465 5.785423 TCAATTAATATGGATCGGAGGGAGT 59.215 40.000 0.00 0.00 0.00 3.85
2281 2466 6.957606 TCAATTAATATGGATCGGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
2286 2471 7.425224 AATATGGATCGGAGGGAGTATTAAG 57.575 40.000 0.00 0.00 0.00 1.85
2321 2509 0.973632 TCGTGCAGGCTCTTAGGAAA 59.026 50.000 0.35 0.00 0.00 3.13
2366 2554 1.000955 GGTCAGTTCCACACGATCACT 59.999 52.381 0.00 0.00 0.00 3.41
2588 2776 4.618927 GCCGGCGGATTATATACAAGTGTA 60.619 45.833 33.44 0.00 34.67 2.90
2589 2777 5.472148 CCGGCGGATTATATACAAGTGTAA 58.528 41.667 24.41 0.00 33.76 2.41
2590 2778 5.346822 CCGGCGGATTATATACAAGTGTAAC 59.653 44.000 24.41 0.00 33.76 2.50
2748 2936 6.522054 AGTGATTTTTCTCTGTTCTTACGGA 58.478 36.000 0.00 0.00 37.33 4.69
2842 3033 6.005198 TGTTGAACCTAACGTTGGGAATTAT 58.995 36.000 34.25 15.57 33.74 1.28
2844 3035 6.503589 TGAACCTAACGTTGGGAATTATTG 57.496 37.500 34.25 8.10 33.74 1.90
2845 3036 5.416326 TGAACCTAACGTTGGGAATTATTGG 59.584 40.000 34.25 7.33 33.74 3.16
2882 3073 1.878953 TCTGAAAACTGCGGAGGAAC 58.121 50.000 9.36 0.00 0.00 3.62
2883 3074 1.140052 TCTGAAAACTGCGGAGGAACA 59.860 47.619 9.36 2.24 0.00 3.18
2886 3077 2.098443 TGAAAACTGCGGAGGAACAAAC 59.902 45.455 9.36 0.00 0.00 2.93
2895 3086 2.546373 CGGAGGAACAAACGTAACCTGA 60.546 50.000 0.00 0.00 0.00 3.86
2942 3133 7.643569 AACATATGCATCAACTTGTATGGAA 57.356 32.000 0.19 0.00 0.00 3.53
2943 3134 7.031226 ACATATGCATCAACTTGTATGGAAC 57.969 36.000 0.19 0.00 0.00 3.62
2962 3153 6.954944 TGGAACAAGTTTGATTAGTCGAAAG 58.045 36.000 0.00 0.00 31.92 2.62
2980 3171 8.299570 AGTCGAAAGTTAGGACGAAACTTAATA 58.700 33.333 1.96 0.00 44.35 0.98
2981 3172 9.080915 GTCGAAAGTTAGGACGAAACTTAATAT 57.919 33.333 1.96 0.00 44.35 1.28
3042 3238 4.528206 ACAACTCATATGTGTCTGAGGTCA 59.472 41.667 10.67 0.00 42.56 4.02
3043 3239 5.012046 ACAACTCATATGTGTCTGAGGTCAA 59.988 40.000 10.67 0.00 42.56 3.18
3044 3240 5.336150 ACTCATATGTGTCTGAGGTCAAG 57.664 43.478 4.59 0.00 42.56 3.02
3045 3241 4.774726 ACTCATATGTGTCTGAGGTCAAGT 59.225 41.667 4.59 0.00 42.56 3.16
3046 3242 5.077134 TCATATGTGTCTGAGGTCAAGTG 57.923 43.478 1.90 0.00 0.00 3.16
3047 3243 2.175878 ATGTGTCTGAGGTCAAGTGC 57.824 50.000 0.00 0.00 0.00 4.40
3048 3244 0.829990 TGTGTCTGAGGTCAAGTGCA 59.170 50.000 0.00 0.00 0.00 4.57
3049 3245 1.417517 TGTGTCTGAGGTCAAGTGCAT 59.582 47.619 0.00 0.00 0.00 3.96
3050 3246 2.632512 TGTGTCTGAGGTCAAGTGCATA 59.367 45.455 0.00 0.00 0.00 3.14
3051 3247 3.257393 GTGTCTGAGGTCAAGTGCATAG 58.743 50.000 0.00 0.00 0.00 2.23
3052 3248 3.056536 GTGTCTGAGGTCAAGTGCATAGA 60.057 47.826 0.00 0.00 0.00 1.98
3053 3249 3.194329 TGTCTGAGGTCAAGTGCATAGAG 59.806 47.826 0.00 0.00 0.00 2.43
3054 3250 2.762887 TCTGAGGTCAAGTGCATAGAGG 59.237 50.000 0.00 0.00 0.00 3.69
3055 3251 1.208052 TGAGGTCAAGTGCATAGAGGC 59.792 52.381 0.00 0.00 0.00 4.70
3056 3252 1.484240 GAGGTCAAGTGCATAGAGGCT 59.516 52.381 0.00 0.00 34.04 4.58
3057 3253 2.695666 GAGGTCAAGTGCATAGAGGCTA 59.304 50.000 0.00 0.00 34.04 3.93
3058 3254 3.107601 AGGTCAAGTGCATAGAGGCTAA 58.892 45.455 0.00 0.00 34.04 3.09
3059 3255 3.519510 AGGTCAAGTGCATAGAGGCTAAA 59.480 43.478 0.00 0.00 34.04 1.85
3060 3256 3.623510 GGTCAAGTGCATAGAGGCTAAAC 59.376 47.826 0.00 0.00 34.04 2.01
3061 3257 3.307242 GTCAAGTGCATAGAGGCTAAACG 59.693 47.826 0.00 0.00 34.04 3.60
3062 3258 3.056107 TCAAGTGCATAGAGGCTAAACGT 60.056 43.478 0.00 0.00 34.04 3.99
3063 3259 4.158949 TCAAGTGCATAGAGGCTAAACGTA 59.841 41.667 0.00 0.00 34.04 3.57
3064 3260 4.308899 AGTGCATAGAGGCTAAACGTAG 57.691 45.455 0.00 0.00 34.04 3.51
3065 3261 3.952323 AGTGCATAGAGGCTAAACGTAGA 59.048 43.478 0.00 0.00 34.04 2.59
3066 3262 4.043073 GTGCATAGAGGCTAAACGTAGAC 58.957 47.826 0.00 0.00 35.29 2.59
3067 3263 3.067742 TGCATAGAGGCTAAACGTAGACC 59.932 47.826 0.00 0.00 35.74 3.85
3068 3264 3.852572 GCATAGAGGCTAAACGTAGACCG 60.853 52.174 0.00 0.00 35.74 4.79
3069 3265 2.119801 AGAGGCTAAACGTAGACCGA 57.880 50.000 0.00 0.00 35.74 4.69
3070 3266 2.440409 AGAGGCTAAACGTAGACCGAA 58.560 47.619 0.00 0.00 35.74 4.30
3071 3267 2.821969 AGAGGCTAAACGTAGACCGAAA 59.178 45.455 0.00 0.00 35.74 3.46
3072 3268 3.119566 AGAGGCTAAACGTAGACCGAAAG 60.120 47.826 0.00 0.00 35.74 2.62
3073 3269 2.560105 AGGCTAAACGTAGACCGAAAGT 59.440 45.455 0.00 0.00 35.74 2.66
3074 3270 3.758554 AGGCTAAACGTAGACCGAAAGTA 59.241 43.478 0.00 0.00 35.74 2.24
3075 3271 4.101235 GGCTAAACGTAGACCGAAAGTAG 58.899 47.826 0.00 0.00 40.70 2.57
3076 3272 4.101235 GCTAAACGTAGACCGAAAGTAGG 58.899 47.826 0.00 0.00 40.70 3.18
3077 3273 2.643933 AACGTAGACCGAAAGTAGGC 57.356 50.000 0.00 0.00 40.70 3.93
3078 3274 1.831580 ACGTAGACCGAAAGTAGGCT 58.168 50.000 0.00 0.00 40.70 4.58
3079 3275 1.471684 ACGTAGACCGAAAGTAGGCTG 59.528 52.381 0.00 0.00 40.70 4.85
3080 3276 1.471684 CGTAGACCGAAAGTAGGCTGT 59.528 52.381 0.00 0.00 39.56 4.40
3081 3277 2.731341 CGTAGACCGAAAGTAGGCTGTG 60.731 54.545 0.00 0.00 39.56 3.66
3082 3278 1.629043 AGACCGAAAGTAGGCTGTGA 58.371 50.000 0.00 0.00 0.00 3.58
3083 3279 2.180276 AGACCGAAAGTAGGCTGTGAT 58.820 47.619 0.00 0.00 0.00 3.06
3084 3280 2.567615 AGACCGAAAGTAGGCTGTGATT 59.432 45.455 0.00 0.00 0.00 2.57
3085 3281 3.008049 AGACCGAAAGTAGGCTGTGATTT 59.992 43.478 0.00 0.00 0.00 2.17
3086 3282 4.222145 AGACCGAAAGTAGGCTGTGATTTA 59.778 41.667 0.00 0.00 0.00 1.40
3087 3283 4.901868 ACCGAAAGTAGGCTGTGATTTAA 58.098 39.130 0.00 0.00 0.00 1.52
3088 3284 5.497474 ACCGAAAGTAGGCTGTGATTTAAT 58.503 37.500 0.00 0.00 0.00 1.40
3089 3285 5.944007 ACCGAAAGTAGGCTGTGATTTAATT 59.056 36.000 0.00 0.00 0.00 1.40
3090 3286 7.107542 ACCGAAAGTAGGCTGTGATTTAATTA 58.892 34.615 0.00 0.00 0.00 1.40
3091 3287 7.065443 ACCGAAAGTAGGCTGTGATTTAATTAC 59.935 37.037 0.00 0.00 0.00 1.89
3092 3288 7.065324 CCGAAAGTAGGCTGTGATTTAATTACA 59.935 37.037 0.00 2.67 0.00 2.41
3093 3289 7.903431 CGAAAGTAGGCTGTGATTTAATTACAC 59.097 37.037 0.00 0.00 35.45 2.90
3094 3290 6.903883 AGTAGGCTGTGATTTAATTACACG 57.096 37.500 0.00 0.00 37.35 4.49
3095 3291 6.636705 AGTAGGCTGTGATTTAATTACACGA 58.363 36.000 0.00 0.00 37.35 4.35
3096 3292 6.757010 AGTAGGCTGTGATTTAATTACACGAG 59.243 38.462 0.00 0.00 37.35 4.18
3097 3293 5.488341 AGGCTGTGATTTAATTACACGAGT 58.512 37.500 0.00 0.00 37.35 4.18
3098 3294 5.581085 AGGCTGTGATTTAATTACACGAGTC 59.419 40.000 0.00 0.00 37.35 3.36
3099 3295 5.481472 GCTGTGATTTAATTACACGAGTCG 58.519 41.667 11.85 11.85 37.35 4.18
3100 3296 5.500290 GCTGTGATTTAATTACACGAGTCGG 60.500 44.000 18.30 8.43 37.35 4.79
3101 3297 4.865925 TGTGATTTAATTACACGAGTCGGG 59.134 41.667 14.57 14.57 37.35 5.14
3103 3299 5.005107 GTGATTTAATTACACGAGTCGGGTC 59.995 44.000 26.28 7.92 40.46 4.46
3104 3300 4.789012 TTTAATTACACGAGTCGGGTCT 57.211 40.909 26.28 12.79 40.46 3.85
3105 3301 4.789012 TTAATTACACGAGTCGGGTCTT 57.211 40.909 26.28 20.46 40.46 3.01
3106 3302 2.649331 ATTACACGAGTCGGGTCTTG 57.351 50.000 26.28 11.26 40.46 3.02
3107 3303 1.608055 TTACACGAGTCGGGTCTTGA 58.392 50.000 26.28 3.32 40.46 3.02
3108 3304 1.608055 TACACGAGTCGGGTCTTGAA 58.392 50.000 26.28 2.86 40.46 2.69
3109 3305 0.031721 ACACGAGTCGGGTCTTGAAC 59.968 55.000 16.30 0.00 40.46 3.18
3110 3306 0.314302 CACGAGTCGGGTCTTGAACT 59.686 55.000 18.30 0.00 0.00 3.01
3111 3307 0.597072 ACGAGTCGGGTCTTGAACTC 59.403 55.000 18.30 0.00 0.00 3.01
3112 3308 0.596577 CGAGTCGGGTCTTGAACTCA 59.403 55.000 4.10 0.00 0.00 3.41
3113 3309 1.000607 CGAGTCGGGTCTTGAACTCAA 60.001 52.381 4.10 0.00 0.00 3.02
3127 3323 6.732896 TTGAACTCAAGACCTCTTAACTCT 57.267 37.500 0.00 0.00 34.28 3.24
3128 3324 7.834881 TTGAACTCAAGACCTCTTAACTCTA 57.165 36.000 0.00 0.00 34.28 2.43
3129 3325 7.834881 TGAACTCAAGACCTCTTAACTCTAA 57.165 36.000 0.00 0.00 34.28 2.10
3130 3326 8.423906 TGAACTCAAGACCTCTTAACTCTAAT 57.576 34.615 0.00 0.00 34.28 1.73
3131 3327 9.529823 TGAACTCAAGACCTCTTAACTCTAATA 57.470 33.333 0.00 0.00 34.28 0.98
3132 3328 9.791820 GAACTCAAGACCTCTTAACTCTAATAC 57.208 37.037 0.00 0.00 34.28 1.89
3133 3329 8.296211 ACTCAAGACCTCTTAACTCTAATACC 57.704 38.462 0.00 0.00 34.28 2.73
3134 3330 7.894364 ACTCAAGACCTCTTAACTCTAATACCA 59.106 37.037 0.00 0.00 34.28 3.25
3135 3331 8.840200 TCAAGACCTCTTAACTCTAATACCAT 57.160 34.615 0.00 0.00 34.28 3.55
3136 3332 8.696374 TCAAGACCTCTTAACTCTAATACCATG 58.304 37.037 0.00 0.00 34.28 3.66
3137 3333 8.478877 CAAGACCTCTTAACTCTAATACCATGT 58.521 37.037 0.00 0.00 34.28 3.21
3138 3334 9.710818 AAGACCTCTTAACTCTAATACCATGTA 57.289 33.333 0.00 0.00 33.79 2.29
3139 3335 9.357161 AGACCTCTTAACTCTAATACCATGTAG 57.643 37.037 0.00 0.00 0.00 2.74
3140 3336 9.352191 GACCTCTTAACTCTAATACCATGTAGA 57.648 37.037 0.00 0.00 0.00 2.59
3141 3337 9.710818 ACCTCTTAACTCTAATACCATGTAGAA 57.289 33.333 0.00 0.00 0.00 2.10
3145 3341 9.250624 CTTAACTCTAATACCATGTAGAAGTGC 57.749 37.037 0.00 0.00 0.00 4.40
3146 3342 6.791867 ACTCTAATACCATGTAGAAGTGCA 57.208 37.500 0.00 0.00 0.00 4.57
3147 3343 7.366847 ACTCTAATACCATGTAGAAGTGCAT 57.633 36.000 0.00 0.00 0.00 3.96
3148 3344 7.212976 ACTCTAATACCATGTAGAAGTGCATG 58.787 38.462 0.00 0.00 44.17 4.06
3149 3345 5.991606 TCTAATACCATGTAGAAGTGCATGC 59.008 40.000 11.82 11.82 43.45 4.06
3150 3346 2.795231 ACCATGTAGAAGTGCATGCT 57.205 45.000 20.33 0.00 43.45 3.79
3151 3347 2.636830 ACCATGTAGAAGTGCATGCTC 58.363 47.619 20.33 15.94 43.45 4.26
3152 3348 2.238144 ACCATGTAGAAGTGCATGCTCT 59.762 45.455 20.33 18.23 43.45 4.09
3153 3349 3.452264 ACCATGTAGAAGTGCATGCTCTA 59.548 43.478 21.70 15.62 43.45 2.43
3154 3350 4.056740 CCATGTAGAAGTGCATGCTCTAG 58.943 47.826 21.70 7.70 43.45 2.43
3155 3351 3.808466 TGTAGAAGTGCATGCTCTAGG 57.192 47.619 21.70 0.00 0.00 3.02
3156 3352 2.159043 TGTAGAAGTGCATGCTCTAGGC 60.159 50.000 21.70 14.07 42.22 3.93
3170 3366 4.986622 GCTCTAGGCAATACAACCAAAAG 58.013 43.478 0.00 0.00 41.35 2.27
3171 3367 4.700213 GCTCTAGGCAATACAACCAAAAGA 59.300 41.667 0.00 0.00 41.35 2.52
3172 3368 5.392057 GCTCTAGGCAATACAACCAAAAGAC 60.392 44.000 0.00 0.00 41.35 3.01
3173 3369 5.007682 TCTAGGCAATACAACCAAAAGACC 58.992 41.667 0.00 0.00 0.00 3.85
3174 3370 3.571590 AGGCAATACAACCAAAAGACCA 58.428 40.909 0.00 0.00 0.00 4.02
3175 3371 3.964031 AGGCAATACAACCAAAAGACCAA 59.036 39.130 0.00 0.00 0.00 3.67
3176 3372 4.592778 AGGCAATACAACCAAAAGACCAAT 59.407 37.500 0.00 0.00 0.00 3.16
3177 3373 4.929211 GGCAATACAACCAAAAGACCAATC 59.071 41.667 0.00 0.00 0.00 2.67
3178 3374 5.279456 GGCAATACAACCAAAAGACCAATCT 60.279 40.000 0.00 0.00 36.42 2.40
3179 3375 5.634859 GCAATACAACCAAAAGACCAATCTG 59.365 40.000 0.00 0.00 34.48 2.90
3180 3376 6.516527 GCAATACAACCAAAAGACCAATCTGA 60.517 38.462 0.00 0.00 34.48 3.27
3181 3377 7.605449 CAATACAACCAAAAGACCAATCTGAT 58.395 34.615 0.00 0.00 34.48 2.90
3182 3378 5.458041 ACAACCAAAAGACCAATCTGATG 57.542 39.130 0.00 0.00 34.48 3.07
3183 3379 5.139727 ACAACCAAAAGACCAATCTGATGA 58.860 37.500 0.00 0.00 34.48 2.92
3184 3380 5.598005 ACAACCAAAAGACCAATCTGATGAA 59.402 36.000 0.00 0.00 34.48 2.57
3185 3381 6.098124 ACAACCAAAAGACCAATCTGATGAAA 59.902 34.615 0.00 0.00 34.48 2.69
3186 3382 6.336842 ACCAAAAGACCAATCTGATGAAAG 57.663 37.500 0.00 0.00 34.48 2.62
3187 3383 6.070656 ACCAAAAGACCAATCTGATGAAAGA 58.929 36.000 0.00 0.00 34.48 2.52
3188 3384 6.208204 ACCAAAAGACCAATCTGATGAAAGAG 59.792 38.462 0.00 0.00 34.48 2.85
3189 3385 6.432162 CCAAAAGACCAATCTGATGAAAGAGA 59.568 38.462 0.00 0.00 34.48 3.10
3190 3386 7.303998 CAAAAGACCAATCTGATGAAAGAGAC 58.696 38.462 0.00 0.00 34.48 3.36
3191 3387 6.371595 AAGACCAATCTGATGAAAGAGACT 57.628 37.500 0.00 0.00 34.48 3.24
3192 3388 7.487822 AAGACCAATCTGATGAAAGAGACTA 57.512 36.000 0.00 0.00 34.48 2.59
3193 3389 7.111247 AGACCAATCTGATGAAAGAGACTAG 57.889 40.000 0.00 0.00 32.29 2.57
3194 3390 6.894654 AGACCAATCTGATGAAAGAGACTAGA 59.105 38.462 0.00 0.00 32.29 2.43
3195 3391 6.872920 ACCAATCTGATGAAAGAGACTAGAC 58.127 40.000 0.00 0.00 0.00 2.59
3196 3392 6.438741 ACCAATCTGATGAAAGAGACTAGACA 59.561 38.462 0.00 0.00 0.00 3.41
3197 3393 7.038729 ACCAATCTGATGAAAGAGACTAGACAA 60.039 37.037 0.00 0.00 0.00 3.18
3198 3394 7.986320 CCAATCTGATGAAAGAGACTAGACAAT 59.014 37.037 0.00 0.00 0.00 2.71
3253 3449 2.884012 ACATCAGCCGAAAATCAACACA 59.116 40.909 0.00 0.00 0.00 3.72
3278 3474 6.489022 ACATGAACATCAGGATTATCATGTGG 59.511 38.462 24.56 3.40 44.38 4.17
3279 3475 6.251255 TGAACATCAGGATTATCATGTGGA 57.749 37.500 6.75 0.00 29.78 4.02
3280 3476 6.293698 TGAACATCAGGATTATCATGTGGAG 58.706 40.000 6.75 0.00 29.78 3.86
3281 3477 5.901413 ACATCAGGATTATCATGTGGAGT 57.099 39.130 6.75 0.00 29.15 3.85
3282 3478 5.618236 ACATCAGGATTATCATGTGGAGTG 58.382 41.667 6.75 3.10 29.15 3.51
3283 3479 4.077300 TCAGGATTATCATGTGGAGTGC 57.923 45.455 6.75 0.00 29.15 4.40
3284 3480 3.144506 CAGGATTATCATGTGGAGTGCC 58.855 50.000 0.00 0.00 0.00 5.01
3285 3481 2.779430 AGGATTATCATGTGGAGTGCCA 59.221 45.455 0.00 0.00 43.47 4.92
3297 3493 3.831323 TGGAGTGCCATTTTCAAGAAGA 58.169 40.909 0.00 0.00 39.92 2.87
3298 3494 3.569701 TGGAGTGCCATTTTCAAGAAGAC 59.430 43.478 0.00 0.00 39.92 3.01
3299 3495 3.365364 GGAGTGCCATTTTCAAGAAGACG 60.365 47.826 0.00 0.00 0.00 4.18
3300 3496 3.476552 AGTGCCATTTTCAAGAAGACGA 58.523 40.909 0.00 0.00 0.00 4.20
3301 3497 3.499918 AGTGCCATTTTCAAGAAGACGAG 59.500 43.478 0.00 0.00 0.00 4.18
3302 3498 2.813754 TGCCATTTTCAAGAAGACGAGG 59.186 45.455 0.00 0.00 0.00 4.63
3303 3499 2.414691 GCCATTTTCAAGAAGACGAGGC 60.415 50.000 0.00 0.00 0.00 4.70
3304 3500 2.159653 CCATTTTCAAGAAGACGAGGCG 60.160 50.000 0.00 0.00 0.00 5.52
3305 3501 1.508632 TTTTCAAGAAGACGAGGCGG 58.491 50.000 0.00 0.00 0.00 6.13
3306 3502 0.949105 TTTCAAGAAGACGAGGCGGC 60.949 55.000 0.00 0.00 33.59 6.53
3307 3503 2.048222 CAAGAAGACGAGGCGGCA 60.048 61.111 13.08 0.00 37.34 5.69
3308 3504 1.448540 CAAGAAGACGAGGCGGCAT 60.449 57.895 13.08 0.00 37.34 4.40
3309 3505 1.153549 AAGAAGACGAGGCGGCATC 60.154 57.895 13.08 4.24 37.34 3.91
3310 3506 2.890847 AAGAAGACGAGGCGGCATCG 62.891 60.000 31.91 31.91 37.68 3.84
3311 3507 4.514577 AAGACGAGGCGGCATCGG 62.515 66.667 35.22 20.16 44.36 4.18
3319 3515 2.819595 GCGGCATCGGCTTCTTGA 60.820 61.111 0.00 0.00 40.87 3.02
3320 3516 2.398554 GCGGCATCGGCTTCTTGAA 61.399 57.895 0.00 0.00 40.87 2.69
3321 3517 1.717937 CGGCATCGGCTTCTTGAAG 59.282 57.895 6.04 6.04 40.87 3.02
3322 3518 0.740868 CGGCATCGGCTTCTTGAAGA 60.741 55.000 13.87 0.00 40.87 2.87
3323 3519 1.673168 GGCATCGGCTTCTTGAAGAT 58.327 50.000 13.87 0.00 40.87 2.40
3324 3520 2.803133 CGGCATCGGCTTCTTGAAGATA 60.803 50.000 13.87 0.00 40.87 1.98
3325 3521 2.805099 GGCATCGGCTTCTTGAAGATAG 59.195 50.000 13.87 0.00 40.87 2.08
3326 3522 3.493350 GGCATCGGCTTCTTGAAGATAGA 60.493 47.826 13.87 9.19 40.87 1.98
3327 3523 4.122776 GCATCGGCTTCTTGAAGATAGAA 58.877 43.478 13.87 0.00 36.96 2.10
3328 3524 4.754114 GCATCGGCTTCTTGAAGATAGAAT 59.246 41.667 13.87 0.00 36.96 2.40
3329 3525 5.928839 GCATCGGCTTCTTGAAGATAGAATA 59.071 40.000 13.87 0.00 36.96 1.75
3330 3526 6.425114 GCATCGGCTTCTTGAAGATAGAATAA 59.575 38.462 13.87 0.00 36.96 1.40
3331 3527 7.359933 GCATCGGCTTCTTGAAGATAGAATAAG 60.360 40.741 13.87 0.00 36.96 1.73
3332 3528 6.516718 TCGGCTTCTTGAAGATAGAATAAGG 58.483 40.000 13.87 0.00 31.66 2.69
3333 3529 6.098409 TCGGCTTCTTGAAGATAGAATAAGGT 59.902 38.462 13.87 0.00 31.66 3.50
3334 3530 6.422400 CGGCTTCTTGAAGATAGAATAAGGTC 59.578 42.308 13.87 0.00 31.66 3.85
3335 3531 6.708502 GGCTTCTTGAAGATAGAATAAGGTCC 59.291 42.308 13.87 0.00 31.66 4.46
3336 3532 7.419634 GGCTTCTTGAAGATAGAATAAGGTCCT 60.420 40.741 13.87 0.00 31.66 3.85
3337 3533 7.655732 GCTTCTTGAAGATAGAATAAGGTCCTC 59.344 40.741 13.87 0.00 31.66 3.71
3338 3534 7.604657 TCTTGAAGATAGAATAAGGTCCTCC 57.395 40.000 0.00 0.00 0.00 4.30
3339 3535 6.555360 TCTTGAAGATAGAATAAGGTCCTCCC 59.445 42.308 0.00 0.00 0.00 4.30
3340 3536 5.155905 TGAAGATAGAATAAGGTCCTCCCC 58.844 45.833 0.00 0.00 0.00 4.81
3341 3537 3.780626 AGATAGAATAAGGTCCTCCCCG 58.219 50.000 0.00 0.00 0.00 5.73
3342 3538 1.713297 TAGAATAAGGTCCTCCCCGC 58.287 55.000 0.00 0.00 0.00 6.13
3343 3539 1.054978 AGAATAAGGTCCTCCCCGCC 61.055 60.000 0.00 0.00 0.00 6.13
3344 3540 1.004361 AATAAGGTCCTCCCCGCCT 59.996 57.895 0.00 0.00 0.00 5.52
3345 3541 0.266753 AATAAGGTCCTCCCCGCCTA 59.733 55.000 0.00 0.00 31.43 3.93
3346 3542 0.178929 ATAAGGTCCTCCCCGCCTAG 60.179 60.000 0.00 0.00 31.43 3.02
3347 3543 2.941563 TAAGGTCCTCCCCGCCTAGC 62.942 65.000 0.00 0.00 31.43 3.42
3360 3556 4.528039 CTAGCCCCCGTCCCGGTA 62.528 72.222 0.00 0.00 46.80 4.02
3361 3557 4.073025 TAGCCCCCGTCCCGGTAA 62.073 66.667 0.00 0.00 46.80 2.85
3362 3558 3.393743 TAGCCCCCGTCCCGGTAAT 62.394 63.158 0.00 0.00 46.80 1.89
3363 3559 4.557385 GCCCCCGTCCCGGTAATG 62.557 72.222 0.00 0.00 46.80 1.90
3364 3560 3.085296 CCCCCGTCCCGGTAATGT 61.085 66.667 0.00 0.00 46.80 2.71
3365 3561 2.672181 CCCCCGTCCCGGTAATGTT 61.672 63.158 0.00 0.00 46.80 2.71
3366 3562 1.300634 CCCCGTCCCGGTAATGTTT 59.699 57.895 0.00 0.00 46.80 2.83
3367 3563 0.745486 CCCCGTCCCGGTAATGTTTC 60.745 60.000 0.00 0.00 46.80 2.78
3368 3564 0.036199 CCCGTCCCGGTAATGTTTCA 60.036 55.000 0.00 0.00 46.80 2.69
3369 3565 1.611148 CCCGTCCCGGTAATGTTTCAA 60.611 52.381 0.00 0.00 46.80 2.69
3370 3566 1.735571 CCGTCCCGGTAATGTTTCAAG 59.264 52.381 0.00 0.00 42.73 3.02
3371 3567 1.129811 CGTCCCGGTAATGTTTCAAGC 59.870 52.381 0.00 0.00 0.00 4.01
3372 3568 2.156098 GTCCCGGTAATGTTTCAAGCA 58.844 47.619 0.00 0.00 0.00 3.91
3373 3569 2.752903 GTCCCGGTAATGTTTCAAGCAT 59.247 45.455 0.00 0.00 0.00 3.79
3374 3570 3.013921 TCCCGGTAATGTTTCAAGCATC 58.986 45.455 0.00 0.00 0.00 3.91
3375 3571 2.223249 CCCGGTAATGTTTCAAGCATCG 60.223 50.000 0.00 0.00 0.00 3.84
3376 3572 2.418628 CCGGTAATGTTTCAAGCATCGT 59.581 45.455 0.00 0.00 0.00 3.73
3377 3573 3.485216 CCGGTAATGTTTCAAGCATCGTC 60.485 47.826 0.00 0.00 0.00 4.20
3378 3574 3.670203 GGTAATGTTTCAAGCATCGTCG 58.330 45.455 0.00 0.00 0.00 5.12
3379 3575 2.900122 AATGTTTCAAGCATCGTCGG 57.100 45.000 0.00 0.00 0.00 4.79
3380 3576 2.093306 ATGTTTCAAGCATCGTCGGA 57.907 45.000 0.00 0.00 0.00 4.55
3381 3577 1.872388 TGTTTCAAGCATCGTCGGAA 58.128 45.000 0.00 0.00 0.00 4.30
3382 3578 1.798223 TGTTTCAAGCATCGTCGGAAG 59.202 47.619 0.00 0.00 0.00 3.46
3383 3579 1.128692 GTTTCAAGCATCGTCGGAAGG 59.871 52.381 0.00 0.00 0.00 3.46
3384 3580 0.320374 TTCAAGCATCGTCGGAAGGT 59.680 50.000 0.00 0.00 0.00 3.50
3385 3581 0.389817 TCAAGCATCGTCGGAAGGTG 60.390 55.000 0.00 0.00 0.00 4.00
3386 3582 0.670546 CAAGCATCGTCGGAAGGTGT 60.671 55.000 6.08 0.00 0.00 4.16
3387 3583 0.670546 AAGCATCGTCGGAAGGTGTG 60.671 55.000 6.08 0.00 0.00 3.82
3388 3584 1.374252 GCATCGTCGGAAGGTGTGT 60.374 57.895 6.08 0.00 0.00 3.72
3389 3585 1.626654 GCATCGTCGGAAGGTGTGTG 61.627 60.000 6.08 0.00 0.00 3.82
3390 3586 1.014044 CATCGTCGGAAGGTGTGTGG 61.014 60.000 0.00 0.00 0.00 4.17
3391 3587 1.183030 ATCGTCGGAAGGTGTGTGGA 61.183 55.000 0.00 0.00 0.00 4.02
3392 3588 1.372997 CGTCGGAAGGTGTGTGGAG 60.373 63.158 0.00 0.00 0.00 3.86
3393 3589 1.004918 GTCGGAAGGTGTGTGGAGG 60.005 63.158 0.00 0.00 0.00 4.30
3394 3590 1.458777 TCGGAAGGTGTGTGGAGGT 60.459 57.895 0.00 0.00 0.00 3.85
3395 3591 1.052124 TCGGAAGGTGTGTGGAGGTT 61.052 55.000 0.00 0.00 0.00 3.50
3396 3592 0.179029 CGGAAGGTGTGTGGAGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
3397 3593 1.318576 GGAAGGTGTGTGGAGGTTTG 58.681 55.000 0.00 0.00 0.00 2.93
3398 3594 1.409661 GGAAGGTGTGTGGAGGTTTGT 60.410 52.381 0.00 0.00 0.00 2.83
3399 3595 1.947456 GAAGGTGTGTGGAGGTTTGTC 59.053 52.381 0.00 0.00 0.00 3.18
3400 3596 1.213296 AGGTGTGTGGAGGTTTGTCT 58.787 50.000 0.00 0.00 0.00 3.41
3401 3597 1.141053 AGGTGTGTGGAGGTTTGTCTC 59.859 52.381 0.00 0.00 0.00 3.36
3407 3603 3.460648 GGAGGTTTGTCTCCGATGG 57.539 57.895 0.00 0.00 43.19 3.51
3408 3604 0.902531 GGAGGTTTGTCTCCGATGGA 59.097 55.000 0.00 0.00 43.19 3.41
3409 3605 1.486726 GGAGGTTTGTCTCCGATGGAT 59.513 52.381 0.00 0.00 43.19 3.41
3410 3606 2.483889 GGAGGTTTGTCTCCGATGGATC 60.484 54.545 0.00 0.00 43.19 3.36
3411 3607 2.432510 GAGGTTTGTCTCCGATGGATCT 59.567 50.000 0.00 0.00 0.00 2.75
3412 3608 2.432510 AGGTTTGTCTCCGATGGATCTC 59.567 50.000 0.00 0.00 0.00 2.75
3413 3609 2.464865 GTTTGTCTCCGATGGATCTCG 58.535 52.381 0.00 0.00 38.37 4.04
3414 3610 1.763968 TTGTCTCCGATGGATCTCGT 58.236 50.000 3.97 0.00 36.93 4.18
3415 3611 1.025041 TGTCTCCGATGGATCTCGTG 58.975 55.000 3.97 0.00 36.93 4.35
3416 3612 0.312416 GTCTCCGATGGATCTCGTGG 59.688 60.000 3.97 0.00 36.93 4.94
3417 3613 0.823769 TCTCCGATGGATCTCGTGGG 60.824 60.000 3.97 1.87 36.93 4.61
3418 3614 0.823769 CTCCGATGGATCTCGTGGGA 60.824 60.000 3.97 5.59 37.00 4.37
3419 3615 0.178961 TCCGATGGATCTCGTGGGAT 60.179 55.000 3.97 0.00 34.85 3.85
3420 3616 0.244994 CCGATGGATCTCGTGGGATC 59.755 60.000 0.89 0.89 40.78 3.36
3424 3620 3.857764 GATCTCGTGGGATCCGGT 58.142 61.111 5.45 0.00 36.91 5.28
3425 3621 1.660917 GATCTCGTGGGATCCGGTC 59.339 63.158 5.45 0.00 36.91 4.79
3426 3622 2.131294 GATCTCGTGGGATCCGGTCG 62.131 65.000 5.45 10.29 36.91 4.79
3427 3623 3.900892 CTCGTGGGATCCGGTCGG 61.901 72.222 17.30 2.52 0.00 4.79
3432 3628 4.462280 GGGATCCGGTCGGCGTTT 62.462 66.667 6.85 0.00 34.68 3.60
3433 3629 2.495866 GGATCCGGTCGGCGTTTA 59.504 61.111 6.85 0.00 34.68 2.01
3434 3630 1.068585 GGATCCGGTCGGCGTTTAT 59.931 57.895 6.85 0.00 34.68 1.40
3435 3631 0.942884 GGATCCGGTCGGCGTTTATC 60.943 60.000 6.85 4.52 34.68 1.75
3436 3632 0.031721 GATCCGGTCGGCGTTTATCT 59.968 55.000 6.85 0.00 34.68 1.98
3437 3633 0.462789 ATCCGGTCGGCGTTTATCTT 59.537 50.000 6.85 0.00 34.68 2.40
3438 3634 0.179129 TCCGGTCGGCGTTTATCTTC 60.179 55.000 6.85 0.00 34.68 2.87
3439 3635 1.477030 CCGGTCGGCGTTTATCTTCG 61.477 60.000 6.85 0.81 0.00 3.79
3440 3636 1.477030 CGGTCGGCGTTTATCTTCGG 61.477 60.000 6.85 0.00 0.00 4.30
3441 3637 0.459063 GGTCGGCGTTTATCTTCGGT 60.459 55.000 6.85 0.00 0.00 4.69
3442 3638 0.643820 GTCGGCGTTTATCTTCGGTG 59.356 55.000 6.85 0.00 0.00 4.94
3443 3639 0.458889 TCGGCGTTTATCTTCGGTGG 60.459 55.000 6.85 0.00 0.00 4.61
3444 3640 0.458889 CGGCGTTTATCTTCGGTGGA 60.459 55.000 0.00 0.00 0.00 4.02
3445 3641 1.805120 CGGCGTTTATCTTCGGTGGAT 60.805 52.381 0.00 0.00 0.00 3.41
3446 3642 1.865340 GGCGTTTATCTTCGGTGGATC 59.135 52.381 0.00 0.00 0.00 3.36
3447 3643 1.865340 GCGTTTATCTTCGGTGGATCC 59.135 52.381 4.20 4.20 0.00 3.36
3462 3658 2.681591 TCCGACTGGATCCGGTCT 59.318 61.111 38.58 16.70 46.92 3.85
3463 3659 1.000019 TCCGACTGGATCCGGTCTT 60.000 57.895 38.58 15.99 46.92 3.01
3464 3660 1.035932 TCCGACTGGATCCGGTCTTC 61.036 60.000 38.58 22.14 46.92 2.87
3465 3661 1.064296 CGACTGGATCCGGTCTTCG 59.936 63.158 38.58 28.07 46.92 3.79
3466 3662 1.654954 CGACTGGATCCGGTCTTCGT 61.655 60.000 38.58 14.57 46.92 3.85
3467 3663 0.531200 GACTGGATCCGGTCTTCGTT 59.469 55.000 36.72 11.56 45.95 3.85
3468 3664 0.531200 ACTGGATCCGGTCTTCGTTC 59.469 55.000 21.21 0.00 37.11 3.95
3469 3665 0.525668 CTGGATCCGGTCTTCGTTCG 60.526 60.000 12.93 0.00 37.11 3.95
3470 3666 1.246056 TGGATCCGGTCTTCGTTCGT 61.246 55.000 7.39 0.00 37.11 3.85
3471 3667 0.525029 GGATCCGGTCTTCGTTCGTC 60.525 60.000 0.00 0.00 37.11 4.20
3472 3668 0.450983 GATCCGGTCTTCGTTCGTCT 59.549 55.000 0.00 0.00 37.11 4.18
3473 3669 1.667724 GATCCGGTCTTCGTTCGTCTA 59.332 52.381 0.00 0.00 37.11 2.59
3474 3670 0.798776 TCCGGTCTTCGTTCGTCTAC 59.201 55.000 0.00 0.00 37.11 2.59
3475 3671 0.519999 CCGGTCTTCGTTCGTCTACG 60.520 60.000 0.00 0.00 42.68 3.51
3476 3672 0.164647 CGGTCTTCGTTCGTCTACGT 59.835 55.000 2.02 0.00 42.01 3.57
3477 3673 1.784816 CGGTCTTCGTTCGTCTACGTC 60.785 57.143 0.00 0.00 42.01 4.34
3478 3674 1.462670 GGTCTTCGTTCGTCTACGTCT 59.537 52.381 0.00 0.00 42.01 4.18
3479 3675 2.493967 GTCTTCGTTCGTCTACGTCTG 58.506 52.381 0.00 0.00 42.01 3.51
3480 3676 2.096516 GTCTTCGTTCGTCTACGTCTGT 60.097 50.000 0.00 0.00 42.01 3.41
3481 3677 2.096565 TCTTCGTTCGTCTACGTCTGTG 60.097 50.000 0.00 0.00 42.01 3.66
3482 3678 1.220529 TCGTTCGTCTACGTCTGTGT 58.779 50.000 0.00 0.00 42.01 3.72
3483 3679 1.070376 TCGTTCGTCTACGTCTGTGTG 60.070 52.381 0.00 0.00 42.01 3.82
3484 3680 1.333524 CGTTCGTCTACGTCTGTGTGT 60.334 52.381 0.00 0.00 40.80 3.72
3485 3681 2.305291 GTTCGTCTACGTCTGTGTGTC 58.695 52.381 0.00 0.00 40.80 3.67
3486 3682 1.875009 TCGTCTACGTCTGTGTGTCT 58.125 50.000 0.00 0.00 40.80 3.41
3487 3683 1.529865 TCGTCTACGTCTGTGTGTCTG 59.470 52.381 0.00 0.00 40.80 3.51
3488 3684 1.687628 GTCTACGTCTGTGTGTCTGC 58.312 55.000 0.00 0.00 0.00 4.26
3489 3685 1.001706 GTCTACGTCTGTGTGTCTGCA 60.002 52.381 0.00 0.00 0.00 4.41
3490 3686 1.266989 TCTACGTCTGTGTGTCTGCAG 59.733 52.381 7.63 7.63 0.00 4.41
3491 3687 0.313987 TACGTCTGTGTGTCTGCAGG 59.686 55.000 15.13 0.00 33.81 4.85
3492 3688 1.068083 CGTCTGTGTGTCTGCAGGT 59.932 57.895 15.13 0.00 33.81 4.00
3493 3689 0.530650 CGTCTGTGTGTCTGCAGGTT 60.531 55.000 15.13 0.00 33.81 3.50
3494 3690 0.940126 GTCTGTGTGTCTGCAGGTTG 59.060 55.000 15.13 0.00 33.81 3.77
3495 3691 0.179048 TCTGTGTGTCTGCAGGTTGG 60.179 55.000 15.13 0.00 33.81 3.77
3496 3692 0.179048 CTGTGTGTCTGCAGGTTGGA 60.179 55.000 15.13 0.00 0.00 3.53
3497 3693 0.473755 TGTGTGTCTGCAGGTTGGAT 59.526 50.000 15.13 0.00 0.00 3.41
3498 3694 1.160137 GTGTGTCTGCAGGTTGGATC 58.840 55.000 15.13 0.00 0.00 3.36
3499 3695 0.036732 TGTGTCTGCAGGTTGGATCC 59.963 55.000 15.13 4.20 0.00 3.36
3500 3696 0.326264 GTGTCTGCAGGTTGGATCCT 59.674 55.000 15.13 0.00 38.51 3.24
3501 3697 1.067295 TGTCTGCAGGTTGGATCCTT 58.933 50.000 15.13 0.00 35.37 3.36
3502 3698 1.003580 TGTCTGCAGGTTGGATCCTTC 59.996 52.381 15.13 5.77 35.37 3.46
3503 3699 0.620556 TCTGCAGGTTGGATCCTTCC 59.379 55.000 15.13 14.69 42.94 3.46
3504 3700 0.745845 CTGCAGGTTGGATCCTTCCG 60.746 60.000 14.23 11.79 45.89 4.30
3505 3701 1.452108 GCAGGTTGGATCCTTCCGG 60.452 63.158 14.23 15.74 45.89 5.14
3506 3702 1.991230 CAGGTTGGATCCTTCCGGT 59.009 57.895 14.23 0.00 45.89 5.28
3507 3703 0.107654 CAGGTTGGATCCTTCCGGTC 60.108 60.000 14.23 0.00 45.89 4.79
3508 3704 0.252742 AGGTTGGATCCTTCCGGTCT 60.253 55.000 14.23 0.00 45.89 3.85
3509 3705 1.007963 AGGTTGGATCCTTCCGGTCTA 59.992 52.381 14.23 0.00 45.89 2.59
3510 3706 2.047830 GGTTGGATCCTTCCGGTCTAT 58.952 52.381 14.23 0.00 45.89 1.98
3511 3707 2.224305 GGTTGGATCCTTCCGGTCTATG 60.224 54.545 14.23 0.00 45.89 2.23
3512 3708 2.434702 GTTGGATCCTTCCGGTCTATGT 59.565 50.000 14.23 0.00 45.89 2.29
3513 3709 2.759355 TGGATCCTTCCGGTCTATGTT 58.241 47.619 14.23 0.00 45.89 2.71
3514 3710 3.112263 TGGATCCTTCCGGTCTATGTTT 58.888 45.455 14.23 0.00 45.89 2.83
3515 3711 3.134081 TGGATCCTTCCGGTCTATGTTTC 59.866 47.826 14.23 0.00 45.89 2.78
3516 3712 3.388350 GGATCCTTCCGGTCTATGTTTCT 59.612 47.826 3.84 0.00 30.72 2.52
3517 3713 4.501743 GGATCCTTCCGGTCTATGTTTCTC 60.502 50.000 3.84 0.00 30.72 2.87
3518 3714 3.709587 TCCTTCCGGTCTATGTTTCTCT 58.290 45.455 0.00 0.00 0.00 3.10
3519 3715 4.094476 TCCTTCCGGTCTATGTTTCTCTT 58.906 43.478 0.00 0.00 0.00 2.85
3520 3716 4.159879 TCCTTCCGGTCTATGTTTCTCTTC 59.840 45.833 0.00 0.00 0.00 2.87
3521 3717 4.081642 CCTTCCGGTCTATGTTTCTCTTCA 60.082 45.833 0.00 0.00 0.00 3.02
3522 3718 5.395768 CCTTCCGGTCTATGTTTCTCTTCAT 60.396 44.000 0.00 0.00 0.00 2.57
3523 3719 5.263968 TCCGGTCTATGTTTCTCTTCATC 57.736 43.478 0.00 0.00 0.00 2.92
3524 3720 4.709886 TCCGGTCTATGTTTCTCTTCATCA 59.290 41.667 0.00 0.00 0.00 3.07
3525 3721 5.046529 CCGGTCTATGTTTCTCTTCATCAG 58.953 45.833 0.00 0.00 0.00 2.90
3526 3722 4.505922 CGGTCTATGTTTCTCTTCATCAGC 59.494 45.833 0.00 0.00 0.00 4.26
3527 3723 4.505922 GGTCTATGTTTCTCTTCATCAGCG 59.494 45.833 0.00 0.00 0.00 5.18
3528 3724 4.505922 GTCTATGTTTCTCTTCATCAGCGG 59.494 45.833 0.00 0.00 0.00 5.52
3529 3725 1.442769 TGTTTCTCTTCATCAGCGGC 58.557 50.000 0.00 0.00 0.00 6.53
3530 3726 0.371645 GTTTCTCTTCATCAGCGGCG 59.628 55.000 0.51 0.51 0.00 6.46
3531 3727 0.740868 TTTCTCTTCATCAGCGGCGG 60.741 55.000 9.78 0.00 0.00 6.13
3532 3728 1.888436 TTCTCTTCATCAGCGGCGGT 61.888 55.000 5.44 5.44 0.00 5.68
3533 3729 1.448540 CTCTTCATCAGCGGCGGTT 60.449 57.895 9.73 0.00 0.00 4.44
3534 3730 1.699656 CTCTTCATCAGCGGCGGTTG 61.700 60.000 9.73 6.66 0.00 3.77
3535 3731 3.386867 CTTCATCAGCGGCGGTTGC 62.387 63.158 9.73 0.00 41.71 4.17
3536 3732 3.899981 TTCATCAGCGGCGGTTGCT 62.900 57.895 9.73 0.00 45.31 3.91
3543 3739 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
3544 3740 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
3545 3741 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
3546 3742 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
3547 3743 2.186160 CGGTTGCTGTTCTGGTGCA 61.186 57.895 0.00 0.00 34.69 4.57
3548 3744 1.360192 GGTTGCTGTTCTGGTGCAC 59.640 57.895 8.80 8.80 36.37 4.57
3549 3745 1.103398 GGTTGCTGTTCTGGTGCACT 61.103 55.000 17.98 0.00 36.37 4.40
3550 3746 0.029834 GTTGCTGTTCTGGTGCACTG 59.970 55.000 17.98 10.30 36.37 3.66
3551 3747 1.102809 TTGCTGTTCTGGTGCACTGG 61.103 55.000 17.98 9.89 36.37 4.00
3552 3748 1.526917 GCTGTTCTGGTGCACTGGT 60.527 57.895 17.98 0.00 0.00 4.00
3553 3749 1.510480 GCTGTTCTGGTGCACTGGTC 61.510 60.000 17.98 0.00 0.00 4.02
3554 3750 0.886490 CTGTTCTGGTGCACTGGTCC 60.886 60.000 17.98 0.00 0.00 4.46
3555 3751 1.344953 TGTTCTGGTGCACTGGTCCT 61.345 55.000 17.98 0.00 0.00 3.85
3556 3752 0.685097 GTTCTGGTGCACTGGTCCTA 59.315 55.000 17.98 0.00 0.00 2.94
3557 3753 1.279271 GTTCTGGTGCACTGGTCCTAT 59.721 52.381 17.98 0.00 0.00 2.57
3558 3754 0.904649 TCTGGTGCACTGGTCCTATG 59.095 55.000 17.98 0.00 0.00 2.23
3559 3755 0.107508 CTGGTGCACTGGTCCTATGG 60.108 60.000 17.98 0.00 0.00 2.74
3560 3756 1.224592 GGTGCACTGGTCCTATGGG 59.775 63.158 17.98 0.00 0.00 4.00
3561 3757 1.224592 GTGCACTGGTCCTATGGGG 59.775 63.158 10.32 0.00 0.00 4.96
3562 3758 2.193248 GCACTGGTCCTATGGGGC 59.807 66.667 0.00 0.00 36.26 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 0.467844 ACACATCCACCTGCAAGCAA 60.468 50.000 0.00 0.00 0.00 3.91
112 113 4.120589 GGAAAAGCGGACTGAGGTAATAG 58.879 47.826 0.00 0.00 0.00 1.73
115 116 1.695242 TGGAAAAGCGGACTGAGGTAA 59.305 47.619 0.00 0.00 0.00 2.85
126 127 0.875059 GACCTCCAGTTGGAAAAGCG 59.125 55.000 1.99 0.00 44.91 4.68
159 160 4.715534 TGTCTCCTTGACCCATGTTTTA 57.284 40.909 0.00 0.00 44.75 1.52
228 229 4.387862 TCACGGAAGCGTTTTATCTTCTTC 59.612 41.667 0.00 0.00 38.86 2.87
439 453 0.620556 TGGAAATGGAGTCCTCTGCC 59.379 55.000 11.33 5.94 36.03 4.85
445 459 5.652014 TGATGTACAAATGGAAATGGAGTCC 59.348 40.000 0.73 0.73 35.55 3.85
449 463 5.105392 GCCTTGATGTACAAATGGAAATGGA 60.105 40.000 14.55 0.00 38.08 3.41
450 464 5.111293 GCCTTGATGTACAAATGGAAATGG 58.889 41.667 14.55 4.22 38.08 3.16
451 465 5.111293 GGCCTTGATGTACAAATGGAAATG 58.889 41.667 14.55 0.00 38.08 2.32
452 466 4.162131 GGGCCTTGATGTACAAATGGAAAT 59.838 41.667 0.84 0.00 38.08 2.17
453 467 3.513515 GGGCCTTGATGTACAAATGGAAA 59.486 43.478 0.84 0.00 38.08 3.13
454 468 3.096092 GGGCCTTGATGTACAAATGGAA 58.904 45.455 0.84 0.00 38.08 3.53
550 659 5.957771 TCATGCCTAAGATCTTACTGGTT 57.042 39.130 17.63 7.28 0.00 3.67
590 700 8.306313 TCAATGGACTTACACTATACTCATGT 57.694 34.615 0.00 0.00 0.00 3.21
732 847 9.987272 AAATCAATATGCCCTTTATAAAGAAGC 57.013 29.630 23.95 23.42 38.28 3.86
1063 1191 3.949754 TGACCCATTGATCTGATCTTTGC 59.050 43.478 17.82 4.97 0.00 3.68
1101 1229 3.804325 CGTCGATGATCATACCTTGCTTT 59.196 43.478 8.54 0.00 0.00 3.51
1131 1259 2.827190 ATCGCGCGACTGGGTAGA 60.827 61.111 37.37 10.06 0.00 2.59
1228 1360 1.080093 CTTGTCGGCCTTCTGCGTA 60.080 57.895 0.00 0.00 42.61 4.42
1315 1447 4.707030 TTTCGTAGGCTCGACTTTATCA 57.293 40.909 8.25 0.00 39.58 2.15
1491 1629 6.938596 TGAGAATTCCTGCATGTATCCAATAG 59.061 38.462 0.65 0.00 0.00 1.73
1516 1654 3.875134 CCGTAAAGGCGTAGGAATCAAAT 59.125 43.478 0.00 0.00 0.00 2.32
1528 1666 5.084055 GTGAACTTTTAATCCGTAAAGGCG 58.916 41.667 0.00 0.00 40.77 5.52
1551 1689 3.120792 AGTACCTGTTTATACGCATGCG 58.879 45.455 36.79 36.79 46.03 4.73
1606 1744 7.079182 TGTTTGACTTGAGATAACGTTGTTT 57.921 32.000 11.99 0.00 0.00 2.83
1607 1745 6.671614 TGTTTGACTTGAGATAACGTTGTT 57.328 33.333 11.99 0.00 0.00 2.83
1610 1748 5.277154 CCGTTGTTTGACTTGAGATAACGTT 60.277 40.000 5.88 5.88 38.26 3.99
1611 1749 4.210537 CCGTTGTTTGACTTGAGATAACGT 59.789 41.667 0.00 0.00 38.26 3.99
1612 1750 4.446385 TCCGTTGTTTGACTTGAGATAACG 59.554 41.667 0.00 0.00 39.26 3.18
1613 1751 5.917541 TCCGTTGTTTGACTTGAGATAAC 57.082 39.130 0.00 0.00 0.00 1.89
1620 1763 5.157781 TCAAAGTTTCCGTTGTTTGACTTG 58.842 37.500 0.00 0.00 34.72 3.16
1631 1774 7.042119 CCAAGCAAAATATTTCAAAGTTTCCGT 60.042 33.333 0.10 0.00 0.00 4.69
1632 1775 7.290118 CCAAGCAAAATATTTCAAAGTTTCCG 58.710 34.615 0.10 0.00 0.00 4.30
1744 1909 5.766222 ACTTCGACGATTAGTTTGTACTGT 58.234 37.500 0.00 0.00 35.78 3.55
1784 1951 4.750098 CACTAGACGTTTTGGACATTGACT 59.250 41.667 0.00 0.00 0.00 3.41
1843 2016 5.124297 GGCTATTAGTACTTTCCCGCAAAAA 59.876 40.000 0.00 0.00 0.00 1.94
1844 2017 4.637091 GGCTATTAGTACTTTCCCGCAAAA 59.363 41.667 0.00 0.00 0.00 2.44
1845 2018 4.080751 AGGCTATTAGTACTTTCCCGCAAA 60.081 41.667 0.00 0.00 0.00 3.68
1846 2019 3.453353 AGGCTATTAGTACTTTCCCGCAA 59.547 43.478 0.00 0.00 0.00 4.85
1847 2020 3.036091 AGGCTATTAGTACTTTCCCGCA 58.964 45.455 0.00 0.00 0.00 5.69
1848 2021 3.747854 AGGCTATTAGTACTTTCCCGC 57.252 47.619 0.00 0.00 0.00 6.13
1849 2022 4.814771 CCAAAGGCTATTAGTACTTTCCCG 59.185 45.833 0.00 0.00 31.31 5.14
1850 2023 5.752650 ACCAAAGGCTATTAGTACTTTCCC 58.247 41.667 0.00 0.00 31.31 3.97
1851 2024 6.412214 TGACCAAAGGCTATTAGTACTTTCC 58.588 40.000 0.00 0.00 31.31 3.13
1852 2025 7.328737 TCTGACCAAAGGCTATTAGTACTTTC 58.671 38.462 0.00 4.32 31.31 2.62
1853 2026 7.253905 TCTGACCAAAGGCTATTAGTACTTT 57.746 36.000 0.00 8.68 33.76 2.66
1854 2027 6.869206 TCTGACCAAAGGCTATTAGTACTT 57.131 37.500 0.00 0.00 0.00 2.24
1855 2028 7.125811 TGAATCTGACCAAAGGCTATTAGTACT 59.874 37.037 0.00 0.00 0.00 2.73
1856 2029 7.272978 TGAATCTGACCAAAGGCTATTAGTAC 58.727 38.462 0.00 0.00 0.00 2.73
1857 2030 7.432148 TGAATCTGACCAAAGGCTATTAGTA 57.568 36.000 0.00 0.00 0.00 1.82
1858 2031 6.313519 TGAATCTGACCAAAGGCTATTAGT 57.686 37.500 0.00 0.00 0.00 2.24
1859 2032 7.118971 GCTATGAATCTGACCAAAGGCTATTAG 59.881 40.741 0.00 0.00 0.00 1.73
1881 2054 1.509644 CGGCATTGACGGCATGCTAT 61.510 55.000 18.92 5.72 40.82 2.97
2174 2359 9.677567 CGAAAGATTTGAAACCAAAGAAAGATA 57.322 29.630 0.00 0.00 37.01 1.98
2224 2409 7.956420 TTAGTATAAAGTTATGATGGCACCG 57.044 36.000 0.00 0.00 0.00 4.94
2251 2436 7.148188 CCCTCCGATCCATATTAATTGACATTG 60.148 40.741 0.00 0.00 0.00 2.82
2254 2439 5.546110 TCCCTCCGATCCATATTAATTGACA 59.454 40.000 0.00 0.00 0.00 3.58
2255 2440 6.049955 TCCCTCCGATCCATATTAATTGAC 57.950 41.667 0.00 0.00 0.00 3.18
2256 2441 5.785423 ACTCCCTCCGATCCATATTAATTGA 59.215 40.000 0.00 0.00 0.00 2.57
2257 2442 6.054860 ACTCCCTCCGATCCATATTAATTG 57.945 41.667 0.00 0.00 0.00 2.32
2259 2444 7.996758 AATACTCCCTCCGATCCATATTAAT 57.003 36.000 0.00 0.00 0.00 1.40
2260 2445 8.904648 TTAATACTCCCTCCGATCCATATTAA 57.095 34.615 0.00 0.00 0.00 1.40
2261 2446 7.563924 CCTTAATACTCCCTCCGATCCATATTA 59.436 40.741 0.00 0.00 0.00 0.98
2262 2447 6.384305 CCTTAATACTCCCTCCGATCCATATT 59.616 42.308 0.00 0.00 0.00 1.28
2263 2448 5.900123 CCTTAATACTCCCTCCGATCCATAT 59.100 44.000 0.00 0.00 0.00 1.78
2266 2451 3.141460 TCCTTAATACTCCCTCCGATCCA 59.859 47.826 0.00 0.00 0.00 3.41
2269 2454 6.101296 ACAAAATCCTTAATACTCCCTCCGAT 59.899 38.462 0.00 0.00 0.00 4.18
2271 2456 5.681639 ACAAAATCCTTAATACTCCCTCCG 58.318 41.667 0.00 0.00 0.00 4.63
2272 2457 7.068348 GGAAACAAAATCCTTAATACTCCCTCC 59.932 40.741 0.00 0.00 33.98 4.30
2273 2458 7.068348 GGGAAACAAAATCCTTAATACTCCCTC 59.932 40.741 0.00 0.00 37.14 4.30
2275 2460 6.895756 AGGGAAACAAAATCCTTAATACTCCC 59.104 38.462 0.00 0.00 38.32 4.30
2276 2461 7.834681 AGAGGGAAACAAAATCCTTAATACTCC 59.165 37.037 0.00 0.00 37.14 3.85
2279 2464 7.336176 ACGAGAGGGAAACAAAATCCTTAATAC 59.664 37.037 0.00 0.00 37.14 1.89
2280 2465 7.335924 CACGAGAGGGAAACAAAATCCTTAATA 59.664 37.037 0.00 0.00 35.60 0.98
2281 2466 6.151144 CACGAGAGGGAAACAAAATCCTTAAT 59.849 38.462 0.00 0.00 35.60 1.40
2286 2471 2.095212 GCACGAGAGGGAAACAAAATCC 60.095 50.000 0.00 0.00 35.60 3.01
2321 2509 1.553704 GTGAGGTTTACTCCATCCGGT 59.446 52.381 0.00 0.00 46.01 5.28
2366 2554 1.658114 CACCGTGACGAGGTTCTCA 59.342 57.895 6.54 0.00 40.59 3.27
2480 2668 1.166129 CGTCGGAGAAGGACTTGAGA 58.834 55.000 0.00 0.00 39.69 3.27
2588 2776 8.543774 TGTGGTAAGCTAGTAGTAGTAGTAGTT 58.456 37.037 17.20 10.88 35.37 2.24
2589 2777 8.083828 TGTGGTAAGCTAGTAGTAGTAGTAGT 57.916 38.462 17.20 5.08 35.37 2.73
2590 2778 8.954950 TTGTGGTAAGCTAGTAGTAGTAGTAG 57.045 38.462 13.24 13.24 35.84 2.57
2591 2779 8.762645 TCTTGTGGTAAGCTAGTAGTAGTAGTA 58.237 37.037 12.61 0.00 0.00 1.82
2793 2982 3.380320 ACCGTTTTCTGGTTTGAAGGAAG 59.620 43.478 0.00 0.00 35.82 3.46
2795 2986 3.007473 ACCGTTTTCTGGTTTGAAGGA 57.993 42.857 0.00 0.00 35.82 3.36
2842 3033 8.347004 TCAGATTATCTTTAATTGTGTGCCAA 57.653 30.769 0.00 0.00 37.49 4.52
2844 3035 9.638239 TTTTCAGATTATCTTTAATTGTGTGCC 57.362 29.630 0.00 0.00 0.00 5.01
2853 3044 7.065803 CCTCCGCAGTTTTCAGATTATCTTTAA 59.934 37.037 0.00 0.00 0.00 1.52
2857 3048 4.162320 TCCTCCGCAGTTTTCAGATTATCT 59.838 41.667 0.00 0.00 0.00 1.98
2859 3050 4.487714 TCCTCCGCAGTTTTCAGATTAT 57.512 40.909 0.00 0.00 0.00 1.28
2860 3051 3.973206 TCCTCCGCAGTTTTCAGATTA 57.027 42.857 0.00 0.00 0.00 1.75
2861 3052 2.814336 GTTCCTCCGCAGTTTTCAGATT 59.186 45.455 0.00 0.00 0.00 2.40
2882 3073 5.137403 CGAGAAATGTTCAGGTTACGTTTG 58.863 41.667 0.00 0.00 35.47 2.93
2883 3074 4.212636 CCGAGAAATGTTCAGGTTACGTTT 59.787 41.667 0.00 0.00 37.41 3.60
2886 3077 3.323243 ACCGAGAAATGTTCAGGTTACG 58.677 45.455 3.32 0.00 39.01 3.18
2895 3086 4.651778 TCCTTTCATGACCGAGAAATGTT 58.348 39.130 0.00 0.00 33.69 2.71
2942 3133 7.929785 TCCTAACTTTCGACTAATCAAACTTGT 59.070 33.333 0.00 0.00 0.00 3.16
2943 3134 8.221766 GTCCTAACTTTCGACTAATCAAACTTG 58.778 37.037 0.00 0.00 0.00 3.16
2980 3171 4.035017 CGTCACGCTGAACAAAGAAAAAT 58.965 39.130 0.00 0.00 0.00 1.82
2981 3172 3.421741 CGTCACGCTGAACAAAGAAAAA 58.578 40.909 0.00 0.00 0.00 1.94
3005 3201 7.445096 ACATATGAGTTGTGTTGTTTGAGATGA 59.555 33.333 10.38 0.00 0.00 2.92
3034 3230 2.741228 GCCTCTATGCACTTGACCTCAG 60.741 54.545 0.00 0.00 0.00 3.35
3042 3238 3.611766 ACGTTTAGCCTCTATGCACTT 57.388 42.857 0.00 0.00 0.00 3.16
3043 3239 3.952323 TCTACGTTTAGCCTCTATGCACT 59.048 43.478 0.00 0.00 0.00 4.40
3044 3240 4.043073 GTCTACGTTTAGCCTCTATGCAC 58.957 47.826 0.00 0.00 0.00 4.57
3045 3241 3.067742 GGTCTACGTTTAGCCTCTATGCA 59.932 47.826 0.00 0.00 0.00 3.96
3046 3242 3.640592 GGTCTACGTTTAGCCTCTATGC 58.359 50.000 0.00 0.00 0.00 3.14
3047 3243 3.562973 TCGGTCTACGTTTAGCCTCTATG 59.437 47.826 0.00 0.00 44.69 2.23
3048 3244 3.813443 TCGGTCTACGTTTAGCCTCTAT 58.187 45.455 0.00 0.00 44.69 1.98
3049 3245 3.266510 TCGGTCTACGTTTAGCCTCTA 57.733 47.619 0.00 0.00 44.69 2.43
3050 3246 2.119801 TCGGTCTACGTTTAGCCTCT 57.880 50.000 0.00 0.00 44.69 3.69
3051 3247 2.927553 TTCGGTCTACGTTTAGCCTC 57.072 50.000 0.00 0.00 44.69 4.70
3052 3248 2.560105 ACTTTCGGTCTACGTTTAGCCT 59.440 45.455 0.00 0.00 44.69 4.58
3053 3249 2.951726 ACTTTCGGTCTACGTTTAGCC 58.048 47.619 0.00 0.00 44.69 3.93
3054 3250 4.101235 CCTACTTTCGGTCTACGTTTAGC 58.899 47.826 0.00 0.00 44.69 3.09
3055 3251 4.101235 GCCTACTTTCGGTCTACGTTTAG 58.899 47.826 0.00 0.00 44.69 1.85
3056 3252 3.758554 AGCCTACTTTCGGTCTACGTTTA 59.241 43.478 0.00 0.00 44.69 2.01
3057 3253 2.560105 AGCCTACTTTCGGTCTACGTTT 59.440 45.455 0.00 0.00 44.69 3.60
3058 3254 2.094854 CAGCCTACTTTCGGTCTACGTT 60.095 50.000 0.00 0.00 44.69 3.99
3059 3255 1.471684 CAGCCTACTTTCGGTCTACGT 59.528 52.381 0.00 0.00 44.69 3.57
3060 3256 1.471684 ACAGCCTACTTTCGGTCTACG 59.528 52.381 0.00 0.00 46.11 3.51
3061 3257 2.490903 TCACAGCCTACTTTCGGTCTAC 59.509 50.000 0.00 0.00 0.00 2.59
3062 3258 2.799017 TCACAGCCTACTTTCGGTCTA 58.201 47.619 0.00 0.00 0.00 2.59
3063 3259 1.629043 TCACAGCCTACTTTCGGTCT 58.371 50.000 0.00 0.00 0.00 3.85
3064 3260 2.674796 ATCACAGCCTACTTTCGGTC 57.325 50.000 0.00 0.00 0.00 4.79
3065 3261 3.418684 AAATCACAGCCTACTTTCGGT 57.581 42.857 0.00 0.00 0.00 4.69
3066 3262 6.436843 AATTAAATCACAGCCTACTTTCGG 57.563 37.500 0.00 0.00 0.00 4.30
3067 3263 7.903431 GTGTAATTAAATCACAGCCTACTTTCG 59.097 37.037 1.01 0.00 33.04 3.46
3068 3264 7.903431 CGTGTAATTAAATCACAGCCTACTTTC 59.097 37.037 5.77 0.00 33.04 2.62
3069 3265 7.604927 TCGTGTAATTAAATCACAGCCTACTTT 59.395 33.333 5.77 0.00 33.04 2.66
3070 3266 7.101054 TCGTGTAATTAAATCACAGCCTACTT 58.899 34.615 5.77 0.00 33.04 2.24
3071 3267 6.636705 TCGTGTAATTAAATCACAGCCTACT 58.363 36.000 5.77 0.00 33.04 2.57
3072 3268 6.534079 ACTCGTGTAATTAAATCACAGCCTAC 59.466 38.462 5.77 0.00 33.04 3.18
3073 3269 6.636705 ACTCGTGTAATTAAATCACAGCCTA 58.363 36.000 5.77 0.00 33.04 3.93
3074 3270 5.488341 ACTCGTGTAATTAAATCACAGCCT 58.512 37.500 5.77 0.00 33.04 4.58
3075 3271 5.500290 CGACTCGTGTAATTAAATCACAGCC 60.500 44.000 5.77 0.00 33.04 4.85
3076 3272 5.481472 CGACTCGTGTAATTAAATCACAGC 58.519 41.667 5.77 0.00 33.04 4.40
3077 3273 5.005394 CCCGACTCGTGTAATTAAATCACAG 59.995 44.000 0.00 4.92 33.04 3.66
3078 3274 4.865925 CCCGACTCGTGTAATTAAATCACA 59.134 41.667 0.00 0.00 33.04 3.58
3079 3275 4.866486 ACCCGACTCGTGTAATTAAATCAC 59.134 41.667 0.00 0.00 0.00 3.06
3080 3276 5.075858 ACCCGACTCGTGTAATTAAATCA 57.924 39.130 0.00 0.00 0.00 2.57
3081 3277 5.346522 AGACCCGACTCGTGTAATTAAATC 58.653 41.667 0.00 0.00 0.00 2.17
3082 3278 5.334724 AGACCCGACTCGTGTAATTAAAT 57.665 39.130 0.00 0.00 0.00 1.40
3083 3279 4.789012 AGACCCGACTCGTGTAATTAAA 57.211 40.909 0.00 0.00 0.00 1.52
3084 3280 4.218200 TCAAGACCCGACTCGTGTAATTAA 59.782 41.667 0.00 0.00 0.00 1.40
3085 3281 3.758023 TCAAGACCCGACTCGTGTAATTA 59.242 43.478 0.00 0.00 0.00 1.40
3086 3282 2.559668 TCAAGACCCGACTCGTGTAATT 59.440 45.455 0.00 0.00 0.00 1.40
3087 3283 2.165167 TCAAGACCCGACTCGTGTAAT 58.835 47.619 0.00 0.00 0.00 1.89
3088 3284 1.608055 TCAAGACCCGACTCGTGTAA 58.392 50.000 0.00 0.00 0.00 2.41
3089 3285 1.267806 GTTCAAGACCCGACTCGTGTA 59.732 52.381 0.00 0.00 0.00 2.90
3090 3286 0.031721 GTTCAAGACCCGACTCGTGT 59.968 55.000 0.00 0.00 0.00 4.49
3091 3287 0.314302 AGTTCAAGACCCGACTCGTG 59.686 55.000 0.00 0.00 0.00 4.35
3092 3288 0.597072 GAGTTCAAGACCCGACTCGT 59.403 55.000 0.00 0.00 30.45 4.18
3093 3289 0.596577 TGAGTTCAAGACCCGACTCG 59.403 55.000 0.00 0.00 41.00 4.18
3094 3290 2.814280 TTGAGTTCAAGACCCGACTC 57.186 50.000 0.00 0.00 39.11 3.36
3104 3300 6.732896 AGAGTTAAGAGGTCTTGAGTTCAA 57.267 37.500 2.32 0.00 37.40 2.69
3105 3301 7.834881 TTAGAGTTAAGAGGTCTTGAGTTCA 57.165 36.000 2.32 0.00 37.40 3.18
3106 3302 9.791820 GTATTAGAGTTAAGAGGTCTTGAGTTC 57.208 37.037 2.32 0.00 37.40 3.01
3107 3303 8.751242 GGTATTAGAGTTAAGAGGTCTTGAGTT 58.249 37.037 2.32 0.00 37.40 3.01
3108 3304 7.894364 TGGTATTAGAGTTAAGAGGTCTTGAGT 59.106 37.037 2.32 0.00 37.40 3.41
3109 3305 8.294954 TGGTATTAGAGTTAAGAGGTCTTGAG 57.705 38.462 2.32 0.00 37.40 3.02
3110 3306 8.696374 CATGGTATTAGAGTTAAGAGGTCTTGA 58.304 37.037 2.32 0.00 37.40 3.02
3111 3307 8.478877 ACATGGTATTAGAGTTAAGAGGTCTTG 58.521 37.037 2.32 0.00 37.40 3.02
3112 3308 8.611051 ACATGGTATTAGAGTTAAGAGGTCTT 57.389 34.615 0.00 0.00 39.85 3.01
3113 3309 9.357161 CTACATGGTATTAGAGTTAAGAGGTCT 57.643 37.037 0.00 0.00 0.00 3.85
3114 3310 9.352191 TCTACATGGTATTAGAGTTAAGAGGTC 57.648 37.037 0.00 0.00 0.00 3.85
3115 3311 9.710818 TTCTACATGGTATTAGAGTTAAGAGGT 57.289 33.333 0.00 0.00 0.00 3.85
3119 3315 9.250624 GCACTTCTACATGGTATTAGAGTTAAG 57.749 37.037 0.00 0.00 0.00 1.85
3120 3316 8.755028 TGCACTTCTACATGGTATTAGAGTTAA 58.245 33.333 0.00 0.00 0.00 2.01
3121 3317 8.301252 TGCACTTCTACATGGTATTAGAGTTA 57.699 34.615 0.00 0.00 0.00 2.24
3122 3318 7.182817 TGCACTTCTACATGGTATTAGAGTT 57.817 36.000 0.00 0.00 0.00 3.01
3123 3319 6.791867 TGCACTTCTACATGGTATTAGAGT 57.208 37.500 0.00 0.00 0.00 3.24
3124 3320 6.146837 GCATGCACTTCTACATGGTATTAGAG 59.853 42.308 14.21 0.00 43.13 2.43
3125 3321 5.991606 GCATGCACTTCTACATGGTATTAGA 59.008 40.000 14.21 0.00 43.13 2.10
3126 3322 6.233430 GCATGCACTTCTACATGGTATTAG 57.767 41.667 14.21 0.00 43.13 1.73
3131 3327 2.795231 AGCATGCACTTCTACATGGT 57.205 45.000 21.98 2.10 46.94 3.55
3132 3328 2.915349 AGAGCATGCACTTCTACATGG 58.085 47.619 21.98 0.00 43.13 3.66
3133 3329 4.056740 CCTAGAGCATGCACTTCTACATG 58.943 47.826 22.83 7.83 45.19 3.21
3134 3330 3.494048 GCCTAGAGCATGCACTTCTACAT 60.494 47.826 22.83 0.00 42.97 2.29
3135 3331 2.159043 GCCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 42.97 2.74
3136 3332 2.478831 GCCTAGAGCATGCACTTCTAC 58.521 52.381 22.83 7.10 42.97 2.59
3137 3333 2.898729 GCCTAGAGCATGCACTTCTA 57.101 50.000 22.83 17.21 42.97 2.10
3138 3334 3.776616 GCCTAGAGCATGCACTTCT 57.223 52.632 22.83 17.00 42.97 2.85
3148 3344 4.700213 TCTTTTGGTTGTATTGCCTAGAGC 59.300 41.667 0.00 0.00 44.14 4.09
3149 3345 5.123979 GGTCTTTTGGTTGTATTGCCTAGAG 59.876 44.000 0.00 0.00 0.00 2.43
3150 3346 5.007682 GGTCTTTTGGTTGTATTGCCTAGA 58.992 41.667 0.00 0.00 0.00 2.43
3151 3347 4.764823 TGGTCTTTTGGTTGTATTGCCTAG 59.235 41.667 0.00 0.00 0.00 3.02
3152 3348 4.730966 TGGTCTTTTGGTTGTATTGCCTA 58.269 39.130 0.00 0.00 0.00 3.93
3153 3349 3.571590 TGGTCTTTTGGTTGTATTGCCT 58.428 40.909 0.00 0.00 0.00 4.75
3154 3350 4.329462 TTGGTCTTTTGGTTGTATTGCC 57.671 40.909 0.00 0.00 0.00 4.52
3155 3351 5.634859 CAGATTGGTCTTTTGGTTGTATTGC 59.365 40.000 0.00 0.00 30.42 3.56
3156 3352 6.980593 TCAGATTGGTCTTTTGGTTGTATTG 58.019 36.000 0.00 0.00 30.42 1.90
3157 3353 7.451255 TCATCAGATTGGTCTTTTGGTTGTATT 59.549 33.333 0.00 0.00 30.42 1.89
3158 3354 6.947733 TCATCAGATTGGTCTTTTGGTTGTAT 59.052 34.615 0.00 0.00 30.42 2.29
3159 3355 6.303054 TCATCAGATTGGTCTTTTGGTTGTA 58.697 36.000 0.00 0.00 30.42 2.41
3160 3356 5.139727 TCATCAGATTGGTCTTTTGGTTGT 58.860 37.500 0.00 0.00 30.42 3.32
3161 3357 5.710513 TCATCAGATTGGTCTTTTGGTTG 57.289 39.130 0.00 0.00 30.42 3.77
3162 3358 6.550854 TCTTTCATCAGATTGGTCTTTTGGTT 59.449 34.615 0.00 0.00 30.42 3.67
3163 3359 6.070656 TCTTTCATCAGATTGGTCTTTTGGT 58.929 36.000 0.00 0.00 30.42 3.67
3164 3360 6.432162 TCTCTTTCATCAGATTGGTCTTTTGG 59.568 38.462 0.00 0.00 30.42 3.28
3165 3361 7.174599 AGTCTCTTTCATCAGATTGGTCTTTTG 59.825 37.037 0.00 0.00 30.42 2.44
3166 3362 7.230027 AGTCTCTTTCATCAGATTGGTCTTTT 58.770 34.615 0.00 0.00 30.42 2.27
3167 3363 6.777782 AGTCTCTTTCATCAGATTGGTCTTT 58.222 36.000 0.00 0.00 30.42 2.52
3168 3364 6.371595 AGTCTCTTTCATCAGATTGGTCTT 57.628 37.500 0.00 0.00 30.42 3.01
3169 3365 6.894654 TCTAGTCTCTTTCATCAGATTGGTCT 59.105 38.462 0.00 0.00 34.14 3.85
3170 3366 6.978080 GTCTAGTCTCTTTCATCAGATTGGTC 59.022 42.308 0.00 0.00 0.00 4.02
3171 3367 6.438741 TGTCTAGTCTCTTTCATCAGATTGGT 59.561 38.462 0.00 0.00 0.00 3.67
3172 3368 6.871844 TGTCTAGTCTCTTTCATCAGATTGG 58.128 40.000 0.00 0.00 0.00 3.16
3173 3369 8.945481 ATTGTCTAGTCTCTTTCATCAGATTG 57.055 34.615 0.00 0.00 0.00 2.67
3200 3396 9.691362 GTGGTTCACTTTGTTGACATATAAATT 57.309 29.630 0.00 0.00 0.00 1.82
3201 3397 9.077885 AGTGGTTCACTTTGTTGACATATAAAT 57.922 29.630 0.00 0.00 42.59 1.40
3202 3398 8.458573 AGTGGTTCACTTTGTTGACATATAAA 57.541 30.769 0.00 0.00 42.59 1.40
3203 3399 7.717436 TGAGTGGTTCACTTTGTTGACATATAA 59.283 33.333 1.90 0.00 45.44 0.98
3204 3400 7.220740 TGAGTGGTTCACTTTGTTGACATATA 58.779 34.615 1.90 0.00 45.44 0.86
3205 3401 6.061441 TGAGTGGTTCACTTTGTTGACATAT 58.939 36.000 1.90 0.00 45.44 1.78
3206 3402 5.432645 TGAGTGGTTCACTTTGTTGACATA 58.567 37.500 1.90 0.00 45.44 2.29
3207 3403 4.269183 TGAGTGGTTCACTTTGTTGACAT 58.731 39.130 1.90 0.00 45.44 3.06
3208 3404 3.680490 TGAGTGGTTCACTTTGTTGACA 58.320 40.909 1.90 0.00 45.44 3.58
3209 3405 4.695217 TTGAGTGGTTCACTTTGTTGAC 57.305 40.909 1.90 0.00 45.44 3.18
3210 3406 5.010112 TGTTTTGAGTGGTTCACTTTGTTGA 59.990 36.000 1.90 0.00 45.44 3.18
3211 3407 5.226396 TGTTTTGAGTGGTTCACTTTGTTG 58.774 37.500 1.90 0.00 45.44 3.33
3212 3408 5.461032 TGTTTTGAGTGGTTCACTTTGTT 57.539 34.783 1.90 0.00 45.44 2.83
3213 3409 5.184864 TGATGTTTTGAGTGGTTCACTTTGT 59.815 36.000 1.90 0.00 45.44 2.83
3214 3410 5.649557 TGATGTTTTGAGTGGTTCACTTTG 58.350 37.500 1.90 0.00 45.44 2.77
3215 3411 5.679638 GCTGATGTTTTGAGTGGTTCACTTT 60.680 40.000 1.90 0.00 45.44 2.66
3253 3449 6.489022 CCACATGATAATCCTGATGTTCATGT 59.511 38.462 21.07 21.07 45.26 3.21
3278 3474 3.498397 TCGTCTTCTTGAAAATGGCACTC 59.502 43.478 0.00 0.00 0.00 3.51
3279 3475 3.476552 TCGTCTTCTTGAAAATGGCACT 58.523 40.909 0.00 0.00 0.00 4.40
3280 3476 3.365364 CCTCGTCTTCTTGAAAATGGCAC 60.365 47.826 0.00 0.00 0.00 5.01
3281 3477 2.813754 CCTCGTCTTCTTGAAAATGGCA 59.186 45.455 0.00 0.00 0.00 4.92
3282 3478 2.414691 GCCTCGTCTTCTTGAAAATGGC 60.415 50.000 0.00 0.00 0.00 4.40
3283 3479 2.159653 CGCCTCGTCTTCTTGAAAATGG 60.160 50.000 0.00 0.00 0.00 3.16
3284 3480 2.159653 CCGCCTCGTCTTCTTGAAAATG 60.160 50.000 0.00 0.00 0.00 2.32
3285 3481 2.076863 CCGCCTCGTCTTCTTGAAAAT 58.923 47.619 0.00 0.00 0.00 1.82
3286 3482 1.508632 CCGCCTCGTCTTCTTGAAAA 58.491 50.000 0.00 0.00 0.00 2.29
3287 3483 0.949105 GCCGCCTCGTCTTCTTGAAA 60.949 55.000 0.00 0.00 0.00 2.69
3288 3484 1.374252 GCCGCCTCGTCTTCTTGAA 60.374 57.895 0.00 0.00 0.00 2.69
3289 3485 1.888436 ATGCCGCCTCGTCTTCTTGA 61.888 55.000 0.00 0.00 0.00 3.02
3290 3486 1.424493 GATGCCGCCTCGTCTTCTTG 61.424 60.000 0.00 0.00 0.00 3.02
3291 3487 1.153549 GATGCCGCCTCGTCTTCTT 60.154 57.895 0.00 0.00 0.00 2.52
3292 3488 2.496817 GATGCCGCCTCGTCTTCT 59.503 61.111 0.00 0.00 0.00 2.85
3293 3489 2.956964 CGATGCCGCCTCGTCTTC 60.957 66.667 9.62 0.00 0.00 2.87
3294 3490 4.514577 CCGATGCCGCCTCGTCTT 62.515 66.667 15.54 0.00 34.36 3.01
3299 3495 4.537433 AGAAGCCGATGCCGCCTC 62.537 66.667 0.00 0.00 38.69 4.70
3300 3496 4.101448 AAGAAGCCGATGCCGCCT 62.101 61.111 0.00 0.00 38.69 5.52
3301 3497 3.880846 CAAGAAGCCGATGCCGCC 61.881 66.667 0.00 0.00 38.69 6.13
3302 3498 2.315038 CTTCAAGAAGCCGATGCCGC 62.315 60.000 0.00 0.00 38.69 6.53
3303 3499 0.740868 TCTTCAAGAAGCCGATGCCG 60.741 55.000 4.95 0.00 38.28 5.69
3304 3500 1.673168 ATCTTCAAGAAGCCGATGCC 58.327 50.000 4.95 0.00 38.28 4.40
3305 3501 3.722147 TCTATCTTCAAGAAGCCGATGC 58.278 45.455 4.95 0.00 38.28 3.91
3306 3502 7.117523 CCTTATTCTATCTTCAAGAAGCCGATG 59.882 40.741 4.95 0.00 36.46 3.84
3307 3503 7.158021 CCTTATTCTATCTTCAAGAAGCCGAT 58.842 38.462 4.95 0.00 36.46 4.18
3308 3504 6.098409 ACCTTATTCTATCTTCAAGAAGCCGA 59.902 38.462 4.95 0.00 36.46 5.54
3309 3505 6.284459 ACCTTATTCTATCTTCAAGAAGCCG 58.716 40.000 4.95 0.00 36.46 5.52
3310 3506 6.708502 GGACCTTATTCTATCTTCAAGAAGCC 59.291 42.308 4.95 0.00 36.46 4.35
3311 3507 7.505258 AGGACCTTATTCTATCTTCAAGAAGC 58.495 38.462 4.95 0.00 36.46 3.86
3312 3508 8.147704 GGAGGACCTTATTCTATCTTCAAGAAG 58.852 40.741 0.00 3.43 36.46 2.85
3313 3509 7.071321 GGGAGGACCTTATTCTATCTTCAAGAA 59.929 40.741 0.00 0.00 35.35 2.52
3314 3510 6.555360 GGGAGGACCTTATTCTATCTTCAAGA 59.445 42.308 0.00 0.00 35.85 3.02
3315 3511 6.239743 GGGGAGGACCTTATTCTATCTTCAAG 60.240 46.154 0.00 0.00 40.03 3.02
3316 3512 5.607171 GGGGAGGACCTTATTCTATCTTCAA 59.393 44.000 0.00 0.00 40.03 2.69
3317 3513 5.155905 GGGGAGGACCTTATTCTATCTTCA 58.844 45.833 0.00 0.00 40.03 3.02
3318 3514 4.221041 CGGGGAGGACCTTATTCTATCTTC 59.779 50.000 0.00 0.00 40.03 2.87
3319 3515 4.161102 CGGGGAGGACCTTATTCTATCTT 58.839 47.826 0.00 0.00 40.03 2.40
3320 3516 3.780626 CGGGGAGGACCTTATTCTATCT 58.219 50.000 0.00 0.00 40.03 1.98
3321 3517 2.234168 GCGGGGAGGACCTTATTCTATC 59.766 54.545 0.00 0.00 40.03 2.08
3322 3518 2.258109 GCGGGGAGGACCTTATTCTAT 58.742 52.381 0.00 0.00 40.03 1.98
3323 3519 1.713297 GCGGGGAGGACCTTATTCTA 58.287 55.000 0.00 0.00 40.03 2.10
3324 3520 1.054978 GGCGGGGAGGACCTTATTCT 61.055 60.000 0.00 0.00 40.03 2.40
3325 3521 1.054978 AGGCGGGGAGGACCTTATTC 61.055 60.000 0.00 0.00 40.03 1.75
3326 3522 0.266753 TAGGCGGGGAGGACCTTATT 59.733 55.000 0.00 0.00 40.03 1.40
3327 3523 0.178929 CTAGGCGGGGAGGACCTTAT 60.179 60.000 0.00 0.00 40.03 1.73
3328 3524 1.232216 CTAGGCGGGGAGGACCTTA 59.768 63.158 0.00 0.00 40.03 2.69
3329 3525 2.041819 CTAGGCGGGGAGGACCTT 60.042 66.667 0.00 0.00 40.03 3.50
3330 3526 4.862823 GCTAGGCGGGGAGGACCT 62.863 72.222 0.00 0.00 40.03 3.85
3352 3548 2.156098 TGCTTGAAACATTACCGGGAC 58.844 47.619 6.32 0.00 0.00 4.46
3353 3549 2.570415 TGCTTGAAACATTACCGGGA 57.430 45.000 6.32 0.00 0.00 5.14
3354 3550 2.223249 CGATGCTTGAAACATTACCGGG 60.223 50.000 6.32 0.00 0.00 5.73
3355 3551 2.418628 ACGATGCTTGAAACATTACCGG 59.581 45.455 0.00 0.00 0.00 5.28
3356 3552 3.670203 GACGATGCTTGAAACATTACCG 58.330 45.455 0.00 0.00 0.00 4.02
3357 3553 3.485216 CCGACGATGCTTGAAACATTACC 60.485 47.826 0.00 0.00 0.00 2.85
3358 3554 3.369756 TCCGACGATGCTTGAAACATTAC 59.630 43.478 0.00 0.00 0.00 1.89
3359 3555 3.591023 TCCGACGATGCTTGAAACATTA 58.409 40.909 0.00 0.00 0.00 1.90
3360 3556 2.422597 TCCGACGATGCTTGAAACATT 58.577 42.857 0.00 0.00 0.00 2.71
3361 3557 2.093306 TCCGACGATGCTTGAAACAT 57.907 45.000 0.00 0.00 0.00 2.71
3362 3558 1.798223 CTTCCGACGATGCTTGAAACA 59.202 47.619 0.00 0.00 0.00 2.83
3363 3559 1.128692 CCTTCCGACGATGCTTGAAAC 59.871 52.381 0.00 0.00 0.00 2.78
3364 3560 1.270625 ACCTTCCGACGATGCTTGAAA 60.271 47.619 0.00 0.00 0.00 2.69
3365 3561 0.320374 ACCTTCCGACGATGCTTGAA 59.680 50.000 0.00 0.00 0.00 2.69
3366 3562 0.389817 CACCTTCCGACGATGCTTGA 60.390 55.000 0.00 0.00 0.00 3.02
3367 3563 0.670546 ACACCTTCCGACGATGCTTG 60.671 55.000 0.00 0.00 0.00 4.01
3368 3564 0.670546 CACACCTTCCGACGATGCTT 60.671 55.000 0.00 0.00 0.00 3.91
3369 3565 1.079819 CACACCTTCCGACGATGCT 60.080 57.895 0.00 0.00 0.00 3.79
3370 3566 1.374252 ACACACCTTCCGACGATGC 60.374 57.895 0.00 0.00 0.00 3.91
3371 3567 1.014044 CCACACACCTTCCGACGATG 61.014 60.000 0.00 0.00 0.00 3.84
3372 3568 1.183030 TCCACACACCTTCCGACGAT 61.183 55.000 0.00 0.00 0.00 3.73
3373 3569 1.802337 CTCCACACACCTTCCGACGA 61.802 60.000 0.00 0.00 0.00 4.20
3374 3570 1.372997 CTCCACACACCTTCCGACG 60.373 63.158 0.00 0.00 0.00 5.12
3375 3571 1.004918 CCTCCACACACCTTCCGAC 60.005 63.158 0.00 0.00 0.00 4.79
3376 3572 1.052124 AACCTCCACACACCTTCCGA 61.052 55.000 0.00 0.00 0.00 4.55
3377 3573 0.179029 AAACCTCCACACACCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
3378 3574 1.318576 CAAACCTCCACACACCTTCC 58.681 55.000 0.00 0.00 0.00 3.46
3379 3575 1.947456 GACAAACCTCCACACACCTTC 59.053 52.381 0.00 0.00 0.00 3.46
3380 3576 1.564348 AGACAAACCTCCACACACCTT 59.436 47.619 0.00 0.00 0.00 3.50
3381 3577 1.141053 GAGACAAACCTCCACACACCT 59.859 52.381 0.00 0.00 0.00 4.00
3382 3578 1.594331 GAGACAAACCTCCACACACC 58.406 55.000 0.00 0.00 0.00 4.16
3390 3586 2.432510 AGATCCATCGGAGACAAACCTC 59.567 50.000 0.00 0.00 42.51 3.85
3391 3587 2.432510 GAGATCCATCGGAGACAAACCT 59.567 50.000 0.00 0.00 42.51 3.50
3392 3588 2.799917 CGAGATCCATCGGAGACAAACC 60.800 54.545 0.00 0.00 42.51 3.27
3393 3589 2.159226 ACGAGATCCATCGGAGACAAAC 60.159 50.000 8.95 0.00 46.91 2.93
3394 3590 2.100197 ACGAGATCCATCGGAGACAAA 58.900 47.619 8.95 0.00 46.91 2.83
3395 3591 1.405463 CACGAGATCCATCGGAGACAA 59.595 52.381 8.95 0.00 46.91 3.18
3396 3592 1.025041 CACGAGATCCATCGGAGACA 58.975 55.000 8.95 0.00 46.91 3.41
3397 3593 0.312416 CCACGAGATCCATCGGAGAC 59.688 60.000 8.95 0.00 46.91 3.36
3398 3594 0.823769 CCCACGAGATCCATCGGAGA 60.824 60.000 8.95 0.00 46.91 3.71
3399 3595 0.823769 TCCCACGAGATCCATCGGAG 60.824 60.000 8.95 1.83 46.91 4.63
3400 3596 0.178961 ATCCCACGAGATCCATCGGA 60.179 55.000 8.95 0.00 46.91 4.55
3401 3597 0.244994 GATCCCACGAGATCCATCGG 59.755 60.000 8.95 0.00 46.91 4.18
3407 3603 1.660917 GACCGGATCCCACGAGATC 59.339 63.158 9.46 0.00 41.69 2.75
3408 3604 2.194212 CGACCGGATCCCACGAGAT 61.194 63.158 9.46 0.00 0.00 2.75
3409 3605 2.827190 CGACCGGATCCCACGAGA 60.827 66.667 9.46 0.00 0.00 4.04
3410 3606 3.900892 CCGACCGGATCCCACGAG 61.901 72.222 9.46 7.37 37.50 4.18
3415 3611 2.373434 ATAAACGCCGACCGGATCCC 62.373 60.000 9.46 0.00 42.52 3.85
3416 3612 0.942884 GATAAACGCCGACCGGATCC 60.943 60.000 9.46 0.00 42.52 3.36
3417 3613 0.031721 AGATAAACGCCGACCGGATC 59.968 55.000 9.46 5.86 42.52 3.36
3418 3614 0.462789 AAGATAAACGCCGACCGGAT 59.537 50.000 9.46 0.00 42.52 4.18
3419 3615 0.179129 GAAGATAAACGCCGACCGGA 60.179 55.000 9.46 0.00 42.52 5.14
3420 3616 1.477030 CGAAGATAAACGCCGACCGG 61.477 60.000 0.00 0.00 42.52 5.28
3421 3617 1.477030 CCGAAGATAAACGCCGACCG 61.477 60.000 0.00 0.00 44.21 4.79
3422 3618 0.459063 ACCGAAGATAAACGCCGACC 60.459 55.000 0.00 0.00 0.00 4.79
3423 3619 0.643820 CACCGAAGATAAACGCCGAC 59.356 55.000 0.00 0.00 0.00 4.79
3424 3620 0.458889 CCACCGAAGATAAACGCCGA 60.459 55.000 0.00 0.00 0.00 5.54
3425 3621 0.458889 TCCACCGAAGATAAACGCCG 60.459 55.000 0.00 0.00 0.00 6.46
3426 3622 1.865340 GATCCACCGAAGATAAACGCC 59.135 52.381 0.00 0.00 0.00 5.68
3427 3623 1.865340 GGATCCACCGAAGATAAACGC 59.135 52.381 6.95 0.00 0.00 4.84
3447 3643 1.064296 CGAAGACCGGATCCAGTCG 59.936 63.158 20.09 12.40 38.08 4.18
3448 3644 0.531200 AACGAAGACCGGATCCAGTC 59.469 55.000 18.92 18.92 43.93 3.51
3449 3645 0.531200 GAACGAAGACCGGATCCAGT 59.469 55.000 9.46 6.41 43.93 4.00
3450 3646 0.525668 CGAACGAAGACCGGATCCAG 60.526 60.000 9.46 2.18 43.93 3.86
3451 3647 1.246056 ACGAACGAAGACCGGATCCA 61.246 55.000 9.46 0.00 43.93 3.41
3452 3648 0.525029 GACGAACGAAGACCGGATCC 60.525 60.000 9.46 0.00 43.93 3.36
3453 3649 0.450983 AGACGAACGAAGACCGGATC 59.549 55.000 9.46 1.42 43.93 3.36
3454 3650 1.399791 GTAGACGAACGAAGACCGGAT 59.600 52.381 9.46 0.00 43.93 4.18
3455 3651 0.798776 GTAGACGAACGAAGACCGGA 59.201 55.000 9.46 0.00 43.93 5.14
3456 3652 0.519999 CGTAGACGAACGAAGACCGG 60.520 60.000 0.00 0.00 45.68 5.28
3457 3653 0.164647 ACGTAGACGAACGAAGACCG 59.835 55.000 9.41 0.00 45.68 4.79
3458 3654 1.462670 AGACGTAGACGAACGAAGACC 59.537 52.381 9.41 1.87 45.68 3.85
3459 3655 2.096516 ACAGACGTAGACGAACGAAGAC 60.097 50.000 9.41 5.38 45.68 3.01
3460 3656 2.096565 CACAGACGTAGACGAACGAAGA 60.097 50.000 9.41 0.00 45.68 2.87
3461 3657 2.231693 CACAGACGTAGACGAACGAAG 58.768 52.381 9.41 7.56 45.68 3.79
3462 3658 1.599071 ACACAGACGTAGACGAACGAA 59.401 47.619 9.41 0.00 45.68 3.85
3463 3659 1.070376 CACACAGACGTAGACGAACGA 60.070 52.381 9.41 0.00 45.68 3.85
3465 3661 2.032204 AGACACACAGACGTAGACGAAC 60.032 50.000 9.41 2.77 43.02 3.95
3466 3662 2.032290 CAGACACACAGACGTAGACGAA 60.032 50.000 9.41 0.00 43.02 3.85
3467 3663 1.529865 CAGACACACAGACGTAGACGA 59.470 52.381 9.41 0.00 43.02 4.20
3468 3664 1.951792 CAGACACACAGACGTAGACG 58.048 55.000 0.00 0.00 46.33 4.18
3469 3665 1.001706 TGCAGACACACAGACGTAGAC 60.002 52.381 0.00 0.00 0.00 2.59
3470 3666 1.266989 CTGCAGACACACAGACGTAGA 59.733 52.381 8.42 0.00 35.90 2.59
3471 3667 1.667177 CCTGCAGACACACAGACGTAG 60.667 57.143 17.39 0.00 35.90 3.51
3472 3668 0.313987 CCTGCAGACACACAGACGTA 59.686 55.000 17.39 0.00 35.90 3.57
3473 3669 1.068083 CCTGCAGACACACAGACGT 59.932 57.895 17.39 0.00 35.90 4.34
3474 3670 0.530650 AACCTGCAGACACACAGACG 60.531 55.000 17.39 0.00 35.90 4.18
3475 3671 0.940126 CAACCTGCAGACACACAGAC 59.060 55.000 17.39 0.00 35.90 3.51
3476 3672 0.179048 CCAACCTGCAGACACACAGA 60.179 55.000 17.39 0.00 35.90 3.41
3477 3673 0.179048 TCCAACCTGCAGACACACAG 60.179 55.000 17.39 0.00 0.00 3.66
3478 3674 0.473755 ATCCAACCTGCAGACACACA 59.526 50.000 17.39 0.00 0.00 3.72
3479 3675 1.160137 GATCCAACCTGCAGACACAC 58.840 55.000 17.39 0.00 0.00 3.82
3480 3676 0.036732 GGATCCAACCTGCAGACACA 59.963 55.000 17.39 0.00 0.00 3.72
3481 3677 0.326264 AGGATCCAACCTGCAGACAC 59.674 55.000 17.39 0.00 39.01 3.67
3482 3678 1.003580 GAAGGATCCAACCTGCAGACA 59.996 52.381 17.39 0.00 40.49 3.41
3483 3679 1.680249 GGAAGGATCCAACCTGCAGAC 60.680 57.143 17.39 0.00 45.79 3.51
3484 3680 0.620556 GGAAGGATCCAACCTGCAGA 59.379 55.000 17.39 0.00 45.79 4.26
3485 3681 0.745845 CGGAAGGATCCAACCTGCAG 60.746 60.000 15.82 6.78 46.97 4.41
3486 3682 1.299648 CGGAAGGATCCAACCTGCA 59.700 57.895 15.82 0.00 46.97 4.41
3487 3683 4.225497 CGGAAGGATCCAACCTGC 57.775 61.111 15.82 0.00 46.97 4.85
3499 3695 5.073311 TGAAGAGAAACATAGACCGGAAG 57.927 43.478 9.46 0.00 0.00 3.46
3500 3696 5.186992 TGATGAAGAGAAACATAGACCGGAA 59.813 40.000 9.46 0.00 0.00 4.30
3501 3697 4.709886 TGATGAAGAGAAACATAGACCGGA 59.290 41.667 9.46 0.00 0.00 5.14
3502 3698 5.011090 TGATGAAGAGAAACATAGACCGG 57.989 43.478 0.00 0.00 0.00 5.28
3503 3699 4.505922 GCTGATGAAGAGAAACATAGACCG 59.494 45.833 0.00 0.00 0.00 4.79
3504 3700 4.505922 CGCTGATGAAGAGAAACATAGACC 59.494 45.833 0.00 0.00 0.00 3.85
3505 3701 4.505922 CCGCTGATGAAGAGAAACATAGAC 59.494 45.833 0.00 0.00 0.00 2.59
3506 3702 4.686972 CCGCTGATGAAGAGAAACATAGA 58.313 43.478 0.00 0.00 0.00 1.98
3507 3703 3.247173 GCCGCTGATGAAGAGAAACATAG 59.753 47.826 0.00 0.00 0.00 2.23
3508 3704 3.198068 GCCGCTGATGAAGAGAAACATA 58.802 45.455 0.00 0.00 0.00 2.29
3509 3705 2.012673 GCCGCTGATGAAGAGAAACAT 58.987 47.619 0.00 0.00 0.00 2.71
3510 3706 1.442769 GCCGCTGATGAAGAGAAACA 58.557 50.000 0.00 0.00 0.00 2.83
3511 3707 0.371645 CGCCGCTGATGAAGAGAAAC 59.628 55.000 0.00 0.00 0.00 2.78
3512 3708 0.740868 CCGCCGCTGATGAAGAGAAA 60.741 55.000 0.00 0.00 0.00 2.52
3513 3709 1.153568 CCGCCGCTGATGAAGAGAA 60.154 57.895 0.00 0.00 0.00 2.87
3514 3710 1.888436 AACCGCCGCTGATGAAGAGA 61.888 55.000 0.00 0.00 0.00 3.10
3515 3711 1.448540 AACCGCCGCTGATGAAGAG 60.449 57.895 0.00 0.00 0.00 2.85
3516 3712 1.741401 CAACCGCCGCTGATGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
3517 3713 2.787249 CAACCGCCGCTGATGAAG 59.213 61.111 0.00 0.00 0.00 3.02
3518 3714 3.430862 GCAACCGCCGCTGATGAA 61.431 61.111 0.00 0.00 0.00 2.57
3519 3715 4.393155 AGCAACCGCCGCTGATGA 62.393 61.111 0.00 0.00 38.60 2.92
3524 3720 4.626081 AGAACAGCAACCGCCGCT 62.626 61.111 0.00 0.00 41.47 5.52
3525 3721 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
3526 3722 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
3527 3723 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
3528 3724 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
3529 3725 2.186160 TGCACCAGAACAGCAACCG 61.186 57.895 0.00 0.00 34.97 4.44
3530 3726 1.103398 AGTGCACCAGAACAGCAACC 61.103 55.000 14.63 0.00 40.35 3.77
3531 3727 0.029834 CAGTGCACCAGAACAGCAAC 59.970 55.000 14.63 0.00 40.35 4.17
3532 3728 1.102809 CCAGTGCACCAGAACAGCAA 61.103 55.000 14.63 0.00 40.35 3.91
3533 3729 1.526686 CCAGTGCACCAGAACAGCA 60.527 57.895 14.63 0.00 35.63 4.41
3534 3730 1.510480 GACCAGTGCACCAGAACAGC 61.510 60.000 14.63 0.00 0.00 4.40
3535 3731 0.886490 GGACCAGTGCACCAGAACAG 60.886 60.000 14.63 0.00 0.00 3.16
3536 3732 1.148273 GGACCAGTGCACCAGAACA 59.852 57.895 14.63 0.00 0.00 3.18
3537 3733 0.685097 TAGGACCAGTGCACCAGAAC 59.315 55.000 14.63 1.45 0.00 3.01
3538 3734 1.278985 CATAGGACCAGTGCACCAGAA 59.721 52.381 14.63 0.00 0.00 3.02
3539 3735 0.904649 CATAGGACCAGTGCACCAGA 59.095 55.000 14.63 0.00 0.00 3.86
3540 3736 0.107508 CCATAGGACCAGTGCACCAG 60.108 60.000 14.63 7.78 0.00 4.00
3541 3737 1.561769 CCCATAGGACCAGTGCACCA 61.562 60.000 14.63 0.00 33.47 4.17
3542 3738 1.224592 CCCATAGGACCAGTGCACC 59.775 63.158 14.63 0.00 33.47 5.01
3543 3739 1.224592 CCCCATAGGACCAGTGCAC 59.775 63.158 9.40 9.40 38.24 4.57
3544 3740 2.679342 GCCCCATAGGACCAGTGCA 61.679 63.158 0.00 0.00 38.24 4.57
3545 3741 2.193248 GCCCCATAGGACCAGTGC 59.807 66.667 0.00 0.00 38.24 4.40
3546 3742 2.919043 GGCCCCATAGGACCAGTG 59.081 66.667 0.00 0.00 37.96 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.