Multiple sequence alignment - TraesCS1D01G241400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G241400 chr1D 100.000 3293 0 0 1 3293 332208380 332211672 0.000000e+00 6082
1 TraesCS1D01G241400 chr1D 83.596 317 40 8 2979 3290 490474914 490475223 1.500000e-73 287
2 TraesCS1D01G241400 chr1A 93.777 2105 69 27 903 2957 429483032 429485124 0.000000e+00 3105
3 TraesCS1D01G241400 chr1B 91.091 2054 110 32 943 2957 446627435 446629454 0.000000e+00 2712
4 TraesCS1D01G241400 chr2D 93.538 913 56 3 1 910 552575260 552574348 0.000000e+00 1356
5 TraesCS1D01G241400 chr2D 92.778 900 60 5 1 896 28420033 28419135 0.000000e+00 1297
6 TraesCS1D01G241400 chr2D 90.854 328 17 5 2979 3293 33298659 33298986 8.440000e-116 427
7 TraesCS1D01G241400 chr3D 91.965 921 63 10 1 915 159430242 159431157 0.000000e+00 1280
8 TraesCS1D01G241400 chr4B 91.099 910 71 9 1 906 41847599 41848502 0.000000e+00 1223
9 TraesCS1D01G241400 chr6D 90.949 906 64 15 1 899 377175812 377176706 0.000000e+00 1203
10 TraesCS1D01G241400 chr6D 82.903 310 42 7 2981 3290 472955891 472955593 5.420000e-68 268
11 TraesCS1D01G241400 chr6D 81.931 321 46 11 2980 3290 472275561 472275879 9.060000e-66 261
12 TraesCS1D01G241400 chr7D 89.912 912 75 16 1 906 164538533 164537633 0.000000e+00 1158
13 TraesCS1D01G241400 chr7D 98.413 315 4 1 2979 3293 423334688 423335001 1.340000e-153 553
14 TraesCS1D01G241400 chr7D 84.076 314 43 6 2979 3290 594147248 594147556 2.480000e-76 296
15 TraesCS1D01G241400 chr7D 82.390 318 47 6 2979 3290 38660210 38659896 5.420000e-68 268
16 TraesCS1D01G241400 chr6A 89.485 913 88 6 3 912 573405206 573404299 0.000000e+00 1147
17 TraesCS1D01G241400 chr6A 88.669 909 93 9 1 906 437633303 437634204 0.000000e+00 1099
18 TraesCS1D01G241400 chr5B 89.133 911 87 12 1 905 458689072 458688168 0.000000e+00 1123
19 TraesCS1D01G241400 chr5B 93.671 316 17 2 2979 3293 550523691 550523378 1.380000e-128 470
20 TraesCS1D01G241400 chr5B 83.758 314 45 3 2979 3292 567792310 567792617 3.210000e-75 292
21 TraesCS1D01G241400 chr7B 95.253 316 14 1 2979 3293 749561355 749561040 1.760000e-137 499
22 TraesCS1D01G241400 chr5A 94.904 314 16 0 2979 3292 625734726 625734413 2.950000e-135 492
23 TraesCS1D01G241400 chr7A 93.651 315 18 2 2979 3293 727279364 727279676 1.380000e-128 470
24 TraesCS1D01G241400 chr7A 93.651 315 19 1 2979 3293 727305282 727305595 1.380000e-128 470
25 TraesCS1D01G241400 chr7A 92.017 238 12 3 3062 3293 100620883 100620647 8.810000e-86 327
26 TraesCS1D01G241400 chr2A 92.476 319 20 2 2979 3293 27321649 27321331 1.390000e-123 453
27 TraesCS1D01G241400 chr6B 83.544 316 41 9 2981 3291 598447298 598446989 5.380000e-73 285
28 TraesCS1D01G241400 chrUn 82.965 317 44 8 2980 3291 26570317 26570628 9.000000e-71 278
29 TraesCS1D01G241400 chrUn 82.428 313 48 4 2981 3290 76583492 76583800 1.950000e-67 267
30 TraesCS1D01G241400 chrUn 82.524 309 47 4 2980 3288 226038173 226037872 7.010000e-67 265
31 TraesCS1D01G241400 chrUn 82.524 309 47 4 2980 3288 250213483 250213182 7.010000e-67 265
32 TraesCS1D01G241400 chrUn 82.390 318 43 9 2979 3290 305830986 305830676 7.010000e-67 265
33 TraesCS1D01G241400 chrUn 82.390 318 43 9 2979 3290 327651953 327651643 7.010000e-67 265
34 TraesCS1D01G241400 chrUn 81.013 316 52 7 2979 3290 88991710 88991399 9.130000e-61 244
35 TraesCS1D01G241400 chrUn 80.938 320 47 8 2979 3290 155017359 155017046 1.180000e-59 241
36 TraesCS1D01G241400 chrUn 80.312 320 49 8 2979 3290 155099473 155099160 2.560000e-56 230
37 TraesCS1D01G241400 chr4A 82.803 314 51 3 2979 3290 722271543 722271231 9.000000e-71 278
38 TraesCS1D01G241400 chr4D 82.609 322 47 7 2979 3292 15535565 15535245 3.240000e-70 276
39 TraesCS1D01G241400 chr5D 82.166 314 50 5 2979 3292 565699579 565699272 7.010000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G241400 chr1D 332208380 332211672 3292 False 6082 6082 100.000 1 3293 1 chr1D.!!$F1 3292
1 TraesCS1D01G241400 chr1A 429483032 429485124 2092 False 3105 3105 93.777 903 2957 1 chr1A.!!$F1 2054
2 TraesCS1D01G241400 chr1B 446627435 446629454 2019 False 2712 2712 91.091 943 2957 1 chr1B.!!$F1 2014
3 TraesCS1D01G241400 chr2D 552574348 552575260 912 True 1356 1356 93.538 1 910 1 chr2D.!!$R2 909
4 TraesCS1D01G241400 chr2D 28419135 28420033 898 True 1297 1297 92.778 1 896 1 chr2D.!!$R1 895
5 TraesCS1D01G241400 chr3D 159430242 159431157 915 False 1280 1280 91.965 1 915 1 chr3D.!!$F1 914
6 TraesCS1D01G241400 chr4B 41847599 41848502 903 False 1223 1223 91.099 1 906 1 chr4B.!!$F1 905
7 TraesCS1D01G241400 chr6D 377175812 377176706 894 False 1203 1203 90.949 1 899 1 chr6D.!!$F1 898
8 TraesCS1D01G241400 chr7D 164537633 164538533 900 True 1158 1158 89.912 1 906 1 chr7D.!!$R2 905
9 TraesCS1D01G241400 chr6A 573404299 573405206 907 True 1147 1147 89.485 3 912 1 chr6A.!!$R1 909
10 TraesCS1D01G241400 chr6A 437633303 437634204 901 False 1099 1099 88.669 1 906 1 chr6A.!!$F1 905
11 TraesCS1D01G241400 chr5B 458688168 458689072 904 True 1123 1123 89.133 1 905 1 chr5B.!!$R1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 271 0.038892 CAGTTGCCATGGTTGCTCAC 60.039 55.0 14.67 1.56 0.00 3.51 F
940 981 0.325390 CCTTAGGAACGGAGGGAGGT 60.325 60.0 0.00 0.00 32.88 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1474 0.106149 GGGCGTACGGAATCAAGGAT 59.894 55.0 18.39 0.0 0.00 3.24 R
2605 2709 0.608130 CCGTGGATGTTCACCTCTCA 59.392 55.0 0.00 0.0 34.36 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.398692 TGCCCACACACCTCTTTTTC 58.601 50.000 0.00 0.00 0.00 2.29
78 80 1.898190 TTCCCCTCCCGATCCCTCTT 61.898 60.000 0.00 0.00 0.00 2.85
88 90 0.172803 GATCCCTCTTACACGCGTGT 59.827 55.000 42.29 42.29 46.87 4.49
172 175 4.760047 GCCCCGCGTCACAGTCAT 62.760 66.667 4.92 0.00 0.00 3.06
267 271 0.038892 CAGTTGCCATGGTTGCTCAC 60.039 55.000 14.67 1.56 0.00 3.51
314 341 2.736144 ACTGCAGTTGCCATGATTTG 57.264 45.000 15.25 0.00 41.18 2.32
335 362 6.478512 TTGAAAATTTTAGGAGTTGCCACT 57.521 33.333 2.75 0.00 40.02 4.00
368 396 2.083774 GCAGTTGCCATGTAGCACTAA 58.916 47.619 0.00 0.00 43.97 2.24
544 577 2.317040 ACTCGGGTGAAAGAGAGTTGA 58.683 47.619 0.00 0.00 40.64 3.18
628 662 2.113139 CTTTGGGTGTGGGCGAGT 59.887 61.111 0.00 0.00 0.00 4.18
644 678 3.688159 GTAGACGGGCGTGTGGGT 61.688 66.667 0.00 0.00 0.00 4.51
669 703 3.153919 GTGATAAACACCCACACACCAT 58.846 45.455 0.00 0.00 43.05 3.55
730 764 2.332312 TAAACGCCCACACACCAGCT 62.332 55.000 0.00 0.00 0.00 4.24
733 767 4.269523 GCCCACACACCAGCTCCA 62.270 66.667 0.00 0.00 0.00 3.86
749 788 3.074538 AGCTCCAGTGTGGTAAAAAGGAT 59.925 43.478 0.00 0.00 39.03 3.24
775 815 2.525248 CGACCGGATGAATGCCACG 61.525 63.158 9.46 0.00 0.00 4.94
781 821 1.386525 GGATGAATGCCACGCACCAT 61.387 55.000 3.82 3.82 43.04 3.55
817 857 6.095580 TGTGGCACATAAAAACTGTTAGAACA 59.904 34.615 17.96 0.00 44.52 3.18
818 858 7.145323 GTGGCACATAAAAACTGTTAGAACAT 58.855 34.615 13.86 0.00 44.52 2.71
847 888 5.824624 AGATTCGTGCATAATTGATTGGACT 59.175 36.000 0.00 0.00 32.64 3.85
906 947 1.064357 CGTGTGGGCGTTAGTGTTTTT 59.936 47.619 0.00 0.00 0.00 1.94
940 981 0.325390 CCTTAGGAACGGAGGGAGGT 60.325 60.000 0.00 0.00 32.88 3.85
941 982 0.824759 CTTAGGAACGGAGGGAGGTG 59.175 60.000 0.00 0.00 0.00 4.00
944 985 2.747686 GAACGGAGGGAGGTGCAA 59.252 61.111 0.00 0.00 0.00 4.08
956 1001 3.055094 GGGAGGTGCAAGAGTATGAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
959 1004 3.054802 AGGTGCAAGAGTATGAGAAAGGG 60.055 47.826 0.00 0.00 0.00 3.95
1029 1087 3.322466 CCTCCCCGTGCTCCAACT 61.322 66.667 0.00 0.00 0.00 3.16
1248 1312 1.525077 GAGTGGCACGACCCAAACA 60.525 57.895 12.71 0.00 36.46 2.83
1410 1474 1.154169 CGCAAGTACTACGACGCCA 60.154 57.895 11.70 0.00 0.00 5.69
1415 1479 1.760192 AGTACTACGACGCCATCCTT 58.240 50.000 0.00 0.00 0.00 3.36
1458 1522 1.079057 GCCGTCCTCACTTCCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
1459 1523 1.827399 GCCGTCCTCACTTCCTTCCA 61.827 60.000 0.00 0.00 0.00 3.53
1706 1774 2.874780 CGAGGTCGTTCGGCTTCG 60.875 66.667 15.50 15.50 36.95 3.79
1756 1824 3.827898 GACTCGCCGGTCCAGGAG 61.828 72.222 1.90 5.24 0.00 3.69
2043 2121 2.864343 CGACGATTGGTGAGGGTATTTC 59.136 50.000 0.00 0.00 0.00 2.17
2051 2129 2.007608 GTGAGGGTATTTCGTGCCTTC 58.992 52.381 0.00 0.00 38.85 3.46
2058 2136 1.503818 ATTTCGTGCCTTCGCGTTGT 61.504 50.000 5.77 0.00 45.60 3.32
2086 2165 5.871396 TCAGTTACTGTCTTTGTCTTCCT 57.129 39.130 12.41 0.00 32.61 3.36
2100 2180 5.209818 TGTCTTCCTTGTTTCGTGTCTAT 57.790 39.130 0.00 0.00 0.00 1.98
2162 2244 4.333926 GGTAGTAGTACTTGGTAGTCGGTG 59.666 50.000 8.40 0.00 35.78 4.94
2221 2303 5.242393 CCTGGAACCTGAAAGCCATATTATG 59.758 44.000 0.00 0.00 0.00 1.90
2222 2304 4.584325 TGGAACCTGAAAGCCATATTATGC 59.416 41.667 0.00 0.00 0.00 3.14
2223 2305 4.584325 GGAACCTGAAAGCCATATTATGCA 59.416 41.667 0.00 0.00 0.00 3.96
2224 2306 5.244626 GGAACCTGAAAGCCATATTATGCAT 59.755 40.000 3.79 3.79 0.00 3.96
2235 2317 6.548622 AGCCATATTATGCATTGAACTGAACT 59.451 34.615 3.54 0.00 0.00 3.01
2236 2318 6.639686 GCCATATTATGCATTGAACTGAACTG 59.360 38.462 3.54 0.00 0.00 3.16
2490 2575 2.357075 CAGACAGTACGAGCCTGTAGA 58.643 52.381 6.41 0.00 43.00 2.59
2605 2709 2.034124 GCAACCTGGGATGCATAACAT 58.966 47.619 18.32 0.00 42.36 2.71
2804 2918 2.190981 GCCGTCGACGTTGAGATTAAT 58.809 47.619 33.49 0.00 37.74 1.40
2823 2937 2.109126 GTGATCTTCTGGCGGTGGC 61.109 63.158 0.00 0.00 38.90 5.01
2824 2938 2.268920 GATCTTCTGGCGGTGGCA 59.731 61.111 0.00 0.00 42.47 4.92
2908 3027 5.178797 TGTATCAGCTTAGCACCTTCTTTC 58.821 41.667 7.07 0.00 0.00 2.62
2909 3028 3.059352 TCAGCTTAGCACCTTCTTTCC 57.941 47.619 7.07 0.00 0.00 3.13
2957 3081 5.102953 TCAGTAGCAAATCCACATAGCTT 57.897 39.130 0.00 0.00 36.80 3.74
2958 3082 5.500234 TCAGTAGCAAATCCACATAGCTTT 58.500 37.500 0.00 0.00 36.80 3.51
2959 3083 5.945784 TCAGTAGCAAATCCACATAGCTTTT 59.054 36.000 0.00 0.00 36.80 2.27
2960 3084 6.094048 TCAGTAGCAAATCCACATAGCTTTTC 59.906 38.462 0.00 0.00 36.80 2.29
2961 3085 4.361451 AGCAAATCCACATAGCTTTTCG 57.639 40.909 0.00 0.00 29.98 3.46
2962 3086 4.009675 AGCAAATCCACATAGCTTTTCGA 58.990 39.130 0.00 0.00 29.98 3.71
2963 3087 4.641989 AGCAAATCCACATAGCTTTTCGAT 59.358 37.500 0.00 0.00 29.98 3.59
2964 3088 5.822519 AGCAAATCCACATAGCTTTTCGATA 59.177 36.000 0.00 0.00 29.98 2.92
2965 3089 6.318648 AGCAAATCCACATAGCTTTTCGATAA 59.681 34.615 0.00 0.00 29.98 1.75
2966 3090 6.972328 GCAAATCCACATAGCTTTTCGATAAA 59.028 34.615 0.00 0.00 0.00 1.40
2967 3091 7.166473 GCAAATCCACATAGCTTTTCGATAAAG 59.834 37.037 12.76 12.76 0.00 1.85
2968 3092 6.867662 ATCCACATAGCTTTTCGATAAAGG 57.132 37.500 16.51 0.00 0.00 3.11
2969 3093 5.123227 TCCACATAGCTTTTCGATAAAGGG 58.877 41.667 16.51 10.68 0.00 3.95
2970 3094 4.261197 CCACATAGCTTTTCGATAAAGGGC 60.261 45.833 16.51 6.32 0.00 5.19
2971 3095 3.560068 ACATAGCTTTTCGATAAAGGGCG 59.440 43.478 16.51 0.00 33.37 6.13
2972 3096 1.379527 AGCTTTTCGATAAAGGGCGG 58.620 50.000 16.51 0.00 33.37 6.13
2973 3097 1.065709 AGCTTTTCGATAAAGGGCGGA 60.066 47.619 16.51 0.00 33.37 5.54
2974 3098 1.947456 GCTTTTCGATAAAGGGCGGAT 59.053 47.619 16.51 0.00 0.00 4.18
2975 3099 2.357952 GCTTTTCGATAAAGGGCGGATT 59.642 45.455 16.51 0.00 0.00 3.01
2976 3100 3.181490 GCTTTTCGATAAAGGGCGGATTT 60.181 43.478 16.51 0.00 0.00 2.17
2977 3101 4.676986 GCTTTTCGATAAAGGGCGGATTTT 60.677 41.667 16.51 0.00 0.00 1.82
2978 3102 4.625972 TTTCGATAAAGGGCGGATTTTC 57.374 40.909 0.00 0.00 0.00 2.29
2979 3103 3.269538 TCGATAAAGGGCGGATTTTCA 57.730 42.857 0.00 0.00 0.00 2.69
2980 3104 2.940410 TCGATAAAGGGCGGATTTTCAC 59.060 45.455 0.00 0.00 0.00 3.18
2981 3105 2.680841 CGATAAAGGGCGGATTTTCACA 59.319 45.455 0.00 0.00 0.00 3.58
2982 3106 3.486875 CGATAAAGGGCGGATTTTCACAC 60.487 47.826 0.00 0.00 0.00 3.82
2983 3107 1.698506 AAAGGGCGGATTTTCACACA 58.301 45.000 0.00 0.00 0.00 3.72
2984 3108 0.958822 AAGGGCGGATTTTCACACAC 59.041 50.000 0.00 0.00 0.00 3.82
2985 3109 0.893727 AGGGCGGATTTTCACACACC 60.894 55.000 0.00 0.00 0.00 4.16
2986 3110 1.584495 GGCGGATTTTCACACACCC 59.416 57.895 0.00 0.00 0.00 4.61
2987 3111 1.209127 GCGGATTTTCACACACCCG 59.791 57.895 0.00 0.00 39.88 5.28
2988 3112 1.873165 CGGATTTTCACACACCCGG 59.127 57.895 0.00 0.00 33.94 5.73
2989 3113 1.584495 GGATTTTCACACACCCGGC 59.416 57.895 0.00 0.00 0.00 6.13
2990 3114 1.584495 GATTTTCACACACCCGGCC 59.416 57.895 0.00 0.00 0.00 6.13
2991 3115 0.893727 GATTTTCACACACCCGGCCT 60.894 55.000 0.00 0.00 0.00 5.19
2992 3116 0.893727 ATTTTCACACACCCGGCCTC 60.894 55.000 0.00 0.00 0.00 4.70
2993 3117 1.990160 TTTTCACACACCCGGCCTCT 61.990 55.000 0.00 0.00 0.00 3.69
2994 3118 2.674563 TTTCACACACCCGGCCTCTG 62.675 60.000 0.00 0.00 0.00 3.35
2997 3121 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
2998 3122 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
2999 3123 2.297895 ACACCCGGCCTCTGCATAA 61.298 57.895 0.00 0.00 40.13 1.90
3000 3124 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
3001 3125 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
3002 3126 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
3003 3127 0.034059 CCCGGCCTCTGCATAACTAG 59.966 60.000 0.00 0.00 40.13 2.57
3004 3128 0.034059 CCGGCCTCTGCATAACTAGG 59.966 60.000 0.00 0.00 40.13 3.02
3005 3129 1.040646 CGGCCTCTGCATAACTAGGA 58.959 55.000 0.00 0.00 40.13 2.94
3006 3130 1.620819 CGGCCTCTGCATAACTAGGAT 59.379 52.381 0.00 0.00 40.13 3.24
3007 3131 2.611473 CGGCCTCTGCATAACTAGGATG 60.611 54.545 0.00 0.00 40.13 3.51
3016 3140 4.882671 CATAACTAGGATGCACACAACC 57.117 45.455 0.00 0.00 39.00 3.77
3017 3141 2.949177 AACTAGGATGCACACAACCA 57.051 45.000 0.00 0.00 41.12 3.67
3018 3142 2.949177 ACTAGGATGCACACAACCAA 57.051 45.000 0.00 0.00 41.12 3.67
3019 3143 3.439857 ACTAGGATGCACACAACCAAT 57.560 42.857 0.00 0.00 41.12 3.16
3020 3144 4.568072 ACTAGGATGCACACAACCAATA 57.432 40.909 0.00 0.00 41.12 1.90
3021 3145 4.261801 ACTAGGATGCACACAACCAATAC 58.738 43.478 0.00 0.00 41.12 1.89
3022 3146 3.439857 AGGATGCACACAACCAATACT 57.560 42.857 0.00 0.00 41.12 2.12
3023 3147 4.568072 AGGATGCACACAACCAATACTA 57.432 40.909 0.00 0.00 41.12 1.82
3024 3148 4.917385 AGGATGCACACAACCAATACTAA 58.083 39.130 0.00 0.00 41.12 2.24
3025 3149 4.700213 AGGATGCACACAACCAATACTAAC 59.300 41.667 0.00 0.00 41.12 2.34
3026 3150 4.457603 GGATGCACACAACCAATACTAACA 59.542 41.667 0.00 0.00 38.58 2.41
3027 3151 4.822036 TGCACACAACCAATACTAACAC 57.178 40.909 0.00 0.00 0.00 3.32
3028 3152 4.200092 TGCACACAACCAATACTAACACA 58.800 39.130 0.00 0.00 0.00 3.72
3029 3153 4.035792 TGCACACAACCAATACTAACACAC 59.964 41.667 0.00 0.00 0.00 3.82
3030 3154 4.035792 GCACACAACCAATACTAACACACA 59.964 41.667 0.00 0.00 0.00 3.72
3031 3155 5.507077 CACACAACCAATACTAACACACAC 58.493 41.667 0.00 0.00 0.00 3.82
3032 3156 5.065346 CACACAACCAATACTAACACACACA 59.935 40.000 0.00 0.00 0.00 3.72
3033 3157 5.648526 ACACAACCAATACTAACACACACAA 59.351 36.000 0.00 0.00 0.00 3.33
3034 3158 6.151312 ACACAACCAATACTAACACACACAAA 59.849 34.615 0.00 0.00 0.00 2.83
3035 3159 7.030165 CACAACCAATACTAACACACACAAAA 58.970 34.615 0.00 0.00 0.00 2.44
3036 3160 7.219917 CACAACCAATACTAACACACACAAAAG 59.780 37.037 0.00 0.00 0.00 2.27
3037 3161 5.827666 ACCAATACTAACACACACAAAAGC 58.172 37.500 0.00 0.00 0.00 3.51
3038 3162 5.358442 ACCAATACTAACACACACAAAAGCA 59.642 36.000 0.00 0.00 0.00 3.91
3039 3163 5.685511 CCAATACTAACACACACAAAAGCAC 59.314 40.000 0.00 0.00 0.00 4.40
3040 3164 6.261859 CAATACTAACACACACAAAAGCACA 58.738 36.000 0.00 0.00 0.00 4.57
3041 3165 4.091453 ACTAACACACACAAAAGCACAC 57.909 40.909 0.00 0.00 0.00 3.82
3042 3166 1.975837 AACACACACAAAAGCACACG 58.024 45.000 0.00 0.00 0.00 4.49
3043 3167 0.455972 ACACACACAAAAGCACACGC 60.456 50.000 0.00 0.00 38.99 5.34
3044 3168 1.226267 ACACACAAAAGCACACGCG 60.226 52.632 3.53 3.53 45.49 6.01
3045 3169 1.938814 CACACAAAAGCACACGCGG 60.939 57.895 12.47 1.27 45.49 6.46
3046 3170 2.353376 CACAAAAGCACACGCGGG 60.353 61.111 6.92 6.92 45.49 6.13
3047 3171 4.264638 ACAAAAGCACACGCGGGC 62.265 61.111 9.12 10.33 45.49 6.13
3048 3172 4.263209 CAAAAGCACACGCGGGCA 62.263 61.111 9.12 0.00 45.49 5.36
3049 3173 3.522731 AAAAGCACACGCGGGCAA 61.523 55.556 9.12 0.00 45.49 4.52
3050 3174 3.069980 AAAAGCACACGCGGGCAAA 62.070 52.632 9.12 0.00 45.49 3.68
3051 3175 2.362329 AAAAGCACACGCGGGCAAAT 62.362 50.000 9.12 0.00 45.49 2.32
3052 3176 1.519751 AAAGCACACGCGGGCAAATA 61.520 50.000 9.12 0.00 45.49 1.40
3053 3177 1.922135 AAGCACACGCGGGCAAATAG 61.922 55.000 9.12 0.00 45.49 1.73
3054 3178 2.100216 CACACGCGGGCAAATAGC 59.900 61.111 9.12 0.00 44.65 2.97
3071 3195 8.159344 GCAAATAGCAAAGTCATATAAGACCT 57.841 34.615 4.52 0.00 44.79 3.85
3072 3196 9.273016 GCAAATAGCAAAGTCATATAAGACCTA 57.727 33.333 4.52 0.47 44.79 3.08
3075 3199 9.495572 AATAGCAAAGTCATATAAGACCTAAGC 57.504 33.333 4.52 4.82 39.34 3.09
3076 3200 7.130681 AGCAAAGTCATATAAGACCTAAGCT 57.869 36.000 4.52 6.76 39.34 3.74
3077 3201 8.251383 AGCAAAGTCATATAAGACCTAAGCTA 57.749 34.615 4.52 0.00 39.34 3.32
3078 3202 8.875168 AGCAAAGTCATATAAGACCTAAGCTAT 58.125 33.333 4.52 0.00 39.34 2.97
3079 3203 8.930760 GCAAAGTCATATAAGACCTAAGCTATG 58.069 37.037 4.52 0.00 39.34 2.23
3080 3204 8.930760 CAAAGTCATATAAGACCTAAGCTATGC 58.069 37.037 4.52 0.00 39.34 3.14
3081 3205 7.782897 AGTCATATAAGACCTAAGCTATGCA 57.217 36.000 4.52 0.00 39.34 3.96
3082 3206 8.372877 AGTCATATAAGACCTAAGCTATGCAT 57.627 34.615 3.79 3.79 39.34 3.96
3083 3207 9.480861 AGTCATATAAGACCTAAGCTATGCATA 57.519 33.333 6.20 6.20 39.34 3.14
3086 3210 8.986847 CATATAAGACCTAAGCTATGCATATGC 58.013 37.037 21.09 21.09 42.50 3.14
3087 3211 3.854666 AGACCTAAGCTATGCATATGCG 58.145 45.455 22.21 9.75 45.83 4.73
3088 3212 3.511540 AGACCTAAGCTATGCATATGCGA 59.488 43.478 22.21 12.05 45.83 5.10
3089 3213 3.854666 ACCTAAGCTATGCATATGCGAG 58.145 45.455 22.21 20.96 45.83 5.03
3090 3214 3.193263 CCTAAGCTATGCATATGCGAGG 58.807 50.000 22.21 22.33 45.83 4.63
3091 3215 1.446907 AAGCTATGCATATGCGAGGC 58.553 50.000 22.21 22.29 45.83 4.70
3129 3253 2.827800 GATCAGATCCTTGATCGGCA 57.172 50.000 8.68 0.00 42.73 5.69
3130 3254 3.117491 GATCAGATCCTTGATCGGCAA 57.883 47.619 8.68 0.00 42.73 4.52
3131 3255 3.470709 GATCAGATCCTTGATCGGCAAA 58.529 45.455 8.68 0.00 42.73 3.68
3132 3256 2.632377 TCAGATCCTTGATCGGCAAAC 58.368 47.619 0.00 0.00 43.17 2.93
3133 3257 2.237143 TCAGATCCTTGATCGGCAAACT 59.763 45.455 0.00 0.00 43.17 2.66
3134 3258 3.450817 TCAGATCCTTGATCGGCAAACTA 59.549 43.478 0.00 0.00 43.17 2.24
3135 3259 4.101585 TCAGATCCTTGATCGGCAAACTAT 59.898 41.667 0.00 0.00 43.17 2.12
3136 3260 5.304357 TCAGATCCTTGATCGGCAAACTATA 59.696 40.000 0.00 0.00 43.17 1.31
3137 3261 5.636965 CAGATCCTTGATCGGCAAACTATAG 59.363 44.000 0.00 0.00 43.17 1.31
3138 3262 4.336889 TCCTTGATCGGCAAACTATAGG 57.663 45.455 4.43 0.00 35.74 2.57
3139 3263 3.964688 TCCTTGATCGGCAAACTATAGGA 59.035 43.478 4.43 0.00 35.74 2.94
3140 3264 4.407621 TCCTTGATCGGCAAACTATAGGAA 59.592 41.667 4.43 0.00 35.74 3.36
3141 3265 5.104693 TCCTTGATCGGCAAACTATAGGAAA 60.105 40.000 4.43 0.00 35.74 3.13
3142 3266 5.237344 CCTTGATCGGCAAACTATAGGAAAG 59.763 44.000 4.43 0.00 35.74 2.62
3143 3267 5.607939 TGATCGGCAAACTATAGGAAAGA 57.392 39.130 4.43 0.00 0.00 2.52
3144 3268 5.357257 TGATCGGCAAACTATAGGAAAGAC 58.643 41.667 4.43 0.00 0.00 3.01
3145 3269 4.133013 TCGGCAAACTATAGGAAAGACC 57.867 45.455 4.43 0.00 39.35 3.85
3146 3270 3.516300 TCGGCAAACTATAGGAAAGACCA 59.484 43.478 4.43 0.00 42.04 4.02
3147 3271 4.163458 TCGGCAAACTATAGGAAAGACCAT 59.837 41.667 4.43 0.00 42.04 3.55
3148 3272 5.364446 TCGGCAAACTATAGGAAAGACCATA 59.636 40.000 4.43 0.00 42.04 2.74
3149 3273 6.042781 TCGGCAAACTATAGGAAAGACCATAT 59.957 38.462 4.43 0.00 42.04 1.78
3150 3274 6.369065 CGGCAAACTATAGGAAAGACCATATC 59.631 42.308 4.43 0.00 42.04 1.63
3151 3275 6.655425 GGCAAACTATAGGAAAGACCATATCC 59.345 42.308 4.43 0.00 42.04 2.59
3152 3276 6.369065 GCAAACTATAGGAAAGACCATATCCG 59.631 42.308 4.43 0.00 42.04 4.18
3153 3277 5.662674 ACTATAGGAAAGACCATATCCGC 57.337 43.478 4.43 0.00 42.04 5.54
3154 3278 5.084519 ACTATAGGAAAGACCATATCCGCA 58.915 41.667 4.43 0.00 42.04 5.69
3155 3279 2.622064 AGGAAAGACCATATCCGCAC 57.378 50.000 0.00 0.00 42.04 5.34
3156 3280 1.141053 AGGAAAGACCATATCCGCACC 59.859 52.381 0.00 0.00 42.04 5.01
3157 3281 1.134220 GGAAAGACCATATCCGCACCA 60.134 52.381 0.00 0.00 38.79 4.17
3158 3282 2.639065 GAAAGACCATATCCGCACCAA 58.361 47.619 0.00 0.00 0.00 3.67
3159 3283 2.038387 AAGACCATATCCGCACCAAC 57.962 50.000 0.00 0.00 0.00 3.77
3160 3284 0.180406 AGACCATATCCGCACCAACC 59.820 55.000 0.00 0.00 0.00 3.77
3161 3285 0.107410 GACCATATCCGCACCAACCA 60.107 55.000 0.00 0.00 0.00 3.67
3162 3286 0.550914 ACCATATCCGCACCAACCAT 59.449 50.000 0.00 0.00 0.00 3.55
3163 3287 1.238439 CCATATCCGCACCAACCATC 58.762 55.000 0.00 0.00 0.00 3.51
3164 3288 1.202806 CCATATCCGCACCAACCATCT 60.203 52.381 0.00 0.00 0.00 2.90
3165 3289 2.146342 CATATCCGCACCAACCATCTC 58.854 52.381 0.00 0.00 0.00 2.75
3166 3290 1.199615 TATCCGCACCAACCATCTCA 58.800 50.000 0.00 0.00 0.00 3.27
3167 3291 0.548031 ATCCGCACCAACCATCTCAT 59.452 50.000 0.00 0.00 0.00 2.90
3168 3292 0.392863 TCCGCACCAACCATCTCATG 60.393 55.000 0.00 0.00 0.00 3.07
3169 3293 0.392863 CCGCACCAACCATCTCATGA 60.393 55.000 0.00 0.00 0.00 3.07
3170 3294 0.729116 CGCACCAACCATCTCATGAC 59.271 55.000 0.00 0.00 0.00 3.06
3171 3295 1.825090 GCACCAACCATCTCATGACA 58.175 50.000 0.00 0.00 0.00 3.58
3172 3296 2.161855 GCACCAACCATCTCATGACAA 58.838 47.619 0.00 0.00 0.00 3.18
3173 3297 2.095059 GCACCAACCATCTCATGACAAC 60.095 50.000 0.00 0.00 0.00 3.32
3174 3298 3.148412 CACCAACCATCTCATGACAACA 58.852 45.455 0.00 0.00 0.00 3.33
3175 3299 3.058016 CACCAACCATCTCATGACAACAC 60.058 47.826 0.00 0.00 0.00 3.32
3176 3300 2.160219 CCAACCATCTCATGACAACACG 59.840 50.000 0.00 0.00 0.00 4.49
3177 3301 2.807967 CAACCATCTCATGACAACACGT 59.192 45.455 0.00 0.00 0.00 4.49
3178 3302 2.416747 ACCATCTCATGACAACACGTG 58.583 47.619 15.48 15.48 0.00 4.49
3179 3303 2.037121 ACCATCTCATGACAACACGTGA 59.963 45.455 25.01 0.00 35.05 4.35
3180 3304 3.066380 CCATCTCATGACAACACGTGAA 58.934 45.455 25.01 2.24 35.74 3.18
3181 3305 3.120546 CCATCTCATGACAACACGTGAAC 60.121 47.826 25.01 10.45 35.74 3.18
3182 3306 2.124122 TCTCATGACAACACGTGAACG 58.876 47.619 25.01 12.14 46.33 3.95
3183 3307 2.124122 CTCATGACAACACGTGAACGA 58.876 47.619 25.01 7.39 43.02 3.85
3184 3308 1.855978 TCATGACAACACGTGAACGAC 59.144 47.619 25.01 10.45 43.02 4.34
3197 3321 4.295133 GTGAACGACGAGATTCTTCAAC 57.705 45.455 0.00 0.00 0.00 3.18
3198 3322 3.734231 GTGAACGACGAGATTCTTCAACA 59.266 43.478 0.00 0.00 0.00 3.33
3199 3323 3.981416 TGAACGACGAGATTCTTCAACAG 59.019 43.478 0.00 0.00 0.00 3.16
3200 3324 2.329379 ACGACGAGATTCTTCAACAGC 58.671 47.619 0.00 0.00 0.00 4.40
3201 3325 2.288213 ACGACGAGATTCTTCAACAGCA 60.288 45.455 0.00 0.00 0.00 4.41
3202 3326 2.731451 CGACGAGATTCTTCAACAGCAA 59.269 45.455 0.00 0.00 0.00 3.91
3203 3327 3.422343 CGACGAGATTCTTCAACAGCAAC 60.422 47.826 0.00 0.00 0.00 4.17
3204 3328 2.476619 ACGAGATTCTTCAACAGCAACG 59.523 45.455 0.00 0.00 0.00 4.10
3205 3329 2.723010 CGAGATTCTTCAACAGCAACGC 60.723 50.000 0.00 0.00 0.00 4.84
3206 3330 1.537202 AGATTCTTCAACAGCAACGCC 59.463 47.619 0.00 0.00 0.00 5.68
3207 3331 1.537202 GATTCTTCAACAGCAACGCCT 59.463 47.619 0.00 0.00 0.00 5.52
3208 3332 1.388547 TTCTTCAACAGCAACGCCTT 58.611 45.000 0.00 0.00 0.00 4.35
3209 3333 0.944386 TCTTCAACAGCAACGCCTTC 59.056 50.000 0.00 0.00 0.00 3.46
3210 3334 0.662619 CTTCAACAGCAACGCCTTCA 59.337 50.000 0.00 0.00 0.00 3.02
3211 3335 0.380378 TTCAACAGCAACGCCTTCAC 59.620 50.000 0.00 0.00 0.00 3.18
3212 3336 0.746204 TCAACAGCAACGCCTTCACA 60.746 50.000 0.00 0.00 0.00 3.58
3213 3337 0.100325 CAACAGCAACGCCTTCACAA 59.900 50.000 0.00 0.00 0.00 3.33
3214 3338 0.814457 AACAGCAACGCCTTCACAAA 59.186 45.000 0.00 0.00 0.00 2.83
3215 3339 0.814457 ACAGCAACGCCTTCACAAAA 59.186 45.000 0.00 0.00 0.00 2.44
3216 3340 1.202290 ACAGCAACGCCTTCACAAAAG 60.202 47.619 0.00 0.00 0.00 2.27
3217 3341 0.385390 AGCAACGCCTTCACAAAAGG 59.615 50.000 0.00 0.00 40.39 3.11
3218 3342 0.383949 GCAACGCCTTCACAAAAGGA 59.616 50.000 7.99 0.00 39.81 3.36
3219 3343 1.600413 GCAACGCCTTCACAAAAGGAG 60.600 52.381 7.99 6.99 42.05 3.69
3220 3344 0.668535 AACGCCTTCACAAAAGGAGC 59.331 50.000 7.99 0.00 40.32 4.70
3221 3345 0.465460 ACGCCTTCACAAAAGGAGCA 60.465 50.000 7.99 0.00 40.32 4.26
3222 3346 0.667993 CGCCTTCACAAAAGGAGCAA 59.332 50.000 7.99 0.00 39.81 3.91
3223 3347 1.600413 CGCCTTCACAAAAGGAGCAAC 60.600 52.381 7.99 0.00 39.81 4.17
3224 3348 1.600413 GCCTTCACAAAAGGAGCAACG 60.600 52.381 7.99 0.00 39.81 4.10
3225 3349 1.600413 CCTTCACAAAAGGAGCAACGC 60.600 52.381 0.00 0.00 39.81 4.84
3226 3350 1.334869 CTTCACAAAAGGAGCAACGCT 59.665 47.619 0.00 0.00 43.88 5.07
3227 3351 1.388547 TCACAAAAGGAGCAACGCTT 58.611 45.000 0.00 0.00 39.88 4.68
3228 3352 2.566913 TCACAAAAGGAGCAACGCTTA 58.433 42.857 0.00 0.00 39.88 3.09
3229 3353 2.548057 TCACAAAAGGAGCAACGCTTAG 59.452 45.455 0.00 0.00 39.88 2.18
3230 3354 1.880027 ACAAAAGGAGCAACGCTTAGG 59.120 47.619 0.00 0.00 39.88 2.69
3231 3355 0.881796 AAAAGGAGCAACGCTTAGGC 59.118 50.000 0.00 0.00 39.88 3.93
3250 3374 3.770040 CCTGCGTCACCGGATCCA 61.770 66.667 9.46 0.00 32.53 3.41
3251 3375 2.264480 CTGCGTCACCGGATCCAA 59.736 61.111 9.46 0.00 32.53 3.53
3252 3376 2.047655 TGCGTCACCGGATCCAAC 60.048 61.111 9.46 3.12 33.68 3.77
3253 3377 2.818274 GCGTCACCGGATCCAACC 60.818 66.667 9.46 0.00 33.68 3.77
3254 3378 2.660206 CGTCACCGGATCCAACCA 59.340 61.111 9.46 0.00 0.00 3.67
3255 3379 1.740296 CGTCACCGGATCCAACCAC 60.740 63.158 9.46 1.70 0.00 4.16
3256 3380 1.376812 GTCACCGGATCCAACCACC 60.377 63.158 9.46 0.00 0.00 4.61
3257 3381 2.435938 CACCGGATCCAACCACCG 60.436 66.667 9.46 0.00 45.24 4.94
3280 3404 7.701809 CGAAGGATAGAATCTAGGTTTTCAC 57.298 40.000 0.00 0.00 0.00 3.18
3281 3405 6.702282 CGAAGGATAGAATCTAGGTTTTCACC 59.298 42.308 0.00 0.00 44.67 4.02
3282 3406 6.502074 AGGATAGAATCTAGGTTTTCACCC 57.498 41.667 0.00 0.00 45.63 4.61
3283 3407 6.213525 AGGATAGAATCTAGGTTTTCACCCT 58.786 40.000 0.00 0.00 45.63 4.34
3284 3408 6.100424 AGGATAGAATCTAGGTTTTCACCCTG 59.900 42.308 0.00 0.00 45.63 4.45
3285 3409 6.099845 GGATAGAATCTAGGTTTTCACCCTGA 59.900 42.308 0.00 0.00 45.63 3.86
3286 3410 5.843019 AGAATCTAGGTTTTCACCCTGAA 57.157 39.130 0.00 0.00 45.63 3.02
3287 3411 5.810095 AGAATCTAGGTTTTCACCCTGAAG 58.190 41.667 0.00 0.00 45.63 3.02
3288 3412 5.548056 AGAATCTAGGTTTTCACCCTGAAGA 59.452 40.000 0.00 0.00 45.63 2.87
3289 3413 5.843019 ATCTAGGTTTTCACCCTGAAGAA 57.157 39.130 0.00 0.00 45.63 2.52
3290 3414 5.640158 TCTAGGTTTTCACCCTGAAGAAA 57.360 39.130 0.00 0.00 45.63 2.52
3291 3415 5.374071 TCTAGGTTTTCACCCTGAAGAAAC 58.626 41.667 0.00 0.00 45.63 2.78
3292 3416 2.949644 AGGTTTTCACCCTGAAGAAACG 59.050 45.455 0.00 0.00 45.63 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.832559 GTAAGAGGGATCGGGAGGGG 60.833 65.000 0.00 0.00 0.00 4.79
88 90 3.191669 CGTTATCTATTTCGCCCACACA 58.808 45.455 0.00 0.00 0.00 3.72
164 167 3.545481 GGACGCGCGATGACTGTG 61.545 66.667 39.36 3.76 0.00 3.66
267 271 0.742505 CCATACATGGCAACTGCAGG 59.257 55.000 19.93 1.57 41.75 4.85
293 320 4.018490 TCAAATCATGGCAACTGCAGTAT 58.982 39.130 22.01 6.94 44.36 2.12
335 362 3.040147 GCAACTGCCTAGTGTTAGTGA 57.960 47.619 0.00 0.00 37.19 3.41
456 489 5.050091 CACGTAAGCAGATGACAACTCTTTT 60.050 40.000 0.00 0.00 45.62 2.27
628 662 3.687102 CACCCACACGCCCGTCTA 61.687 66.667 0.00 0.00 0.00 2.59
644 678 3.880490 GTGTGTGGGTGTTTATCACTTCA 59.120 43.478 0.00 0.00 45.50 3.02
730 764 4.141287 CACATCCTTTTTACCACACTGGA 58.859 43.478 0.00 0.00 40.96 3.86
733 767 3.888930 CCACACATCCTTTTTACCACACT 59.111 43.478 0.00 0.00 0.00 3.55
749 788 4.386951 CATCCGGTCGCCCACACA 62.387 66.667 0.00 0.00 0.00 3.72
775 815 3.733337 CCACATAGGACTAAGATGGTGC 58.267 50.000 0.00 0.00 41.22 5.01
781 821 6.553953 TTTATGTGCCACATAGGACTAAGA 57.446 37.500 16.48 0.00 41.56 2.10
818 858 3.693578 TCAATTATGCACGAATCTTGGCA 59.306 39.130 0.00 0.00 41.00 4.92
926 967 2.804828 CTTGCACCTCCCTCCGTTCC 62.805 65.000 0.00 0.00 0.00 3.62
927 968 1.376037 CTTGCACCTCCCTCCGTTC 60.376 63.158 0.00 0.00 0.00 3.95
930 971 0.970937 TACTCTTGCACCTCCCTCCG 60.971 60.000 0.00 0.00 0.00 4.63
932 973 2.102252 CTCATACTCTTGCACCTCCCTC 59.898 54.545 0.00 0.00 0.00 4.30
934 975 2.111384 TCTCATACTCTTGCACCTCCC 58.889 52.381 0.00 0.00 0.00 4.30
940 981 2.239654 CCCCCTTTCTCATACTCTTGCA 59.760 50.000 0.00 0.00 0.00 4.08
941 982 2.924421 CCCCCTTTCTCATACTCTTGC 58.076 52.381 0.00 0.00 0.00 4.01
959 1004 5.221130 CGTCTCGATCTTTTATTACTCCCC 58.779 45.833 0.00 0.00 0.00 4.81
1076 1134 1.840198 AGGGACCTTCCGGTTTCGT 60.840 57.895 0.00 0.00 45.73 3.85
1383 1447 2.203972 TAGTACTTGCGCTCGCCGTT 62.204 55.000 9.73 0.00 41.09 4.44
1410 1474 0.106149 GGGCGTACGGAATCAAGGAT 59.894 55.000 18.39 0.00 0.00 3.24
1415 1479 1.140161 CGAAGGGCGTACGGAATCA 59.860 57.895 18.39 0.00 34.64 2.57
1756 1824 3.079941 GAACTCGTTTAGCCGCGGC 62.080 63.158 42.34 42.34 42.33 6.53
1765 1833 1.301479 GCGGTCCAGGAACTCGTTT 60.301 57.895 2.07 0.00 34.60 3.60
1792 1860 1.076533 CGTTGCAGTAGCCGAACGAT 61.077 55.000 7.11 0.00 46.74 3.73
1803 1871 2.377628 TTTCTCCTCGCCGTTGCAGT 62.378 55.000 0.00 0.00 37.32 4.40
2043 2121 1.721133 GAAACAACGCGAAGGCACG 60.721 57.895 15.93 0.08 39.92 5.34
2051 2129 3.900116 CAGTAACTGAATGAAACAACGCG 59.100 43.478 3.53 3.53 32.44 6.01
2058 2136 8.506168 AAGACAAAGACAGTAACTGAATGAAA 57.494 30.769 0.00 0.00 35.18 2.69
2086 2165 7.870954 ACAAGATTAGACATAGACACGAAACAA 59.129 33.333 0.00 0.00 0.00 2.83
2100 2180 1.065709 GGGGCCGAACAAGATTAGACA 60.066 52.381 0.00 0.00 0.00 3.41
2162 2244 5.533482 ACAGGAACAGAGATACATAATCGC 58.467 41.667 0.00 0.00 39.79 4.58
2221 2303 7.597743 AGAATCAAATTCAGTTCAGTTCAATGC 59.402 33.333 2.79 0.00 41.71 3.56
2222 2304 8.912658 CAGAATCAAATTCAGTTCAGTTCAATG 58.087 33.333 2.79 0.00 41.71 2.82
2223 2305 8.636213 ACAGAATCAAATTCAGTTCAGTTCAAT 58.364 29.630 2.79 0.00 41.71 2.57
2224 2306 7.999679 ACAGAATCAAATTCAGTTCAGTTCAA 58.000 30.769 2.79 0.00 41.71 2.69
2236 2318 9.788960 GGTTTTCAGGTATACAGAATCAAATTC 57.211 33.333 5.01 0.00 39.56 2.17
2490 2575 4.382362 GGGTTATTGCTACTGTTCGTAGGT 60.382 45.833 0.00 0.00 44.69 3.08
2605 2709 0.608130 CCGTGGATGTTCACCTCTCA 59.392 55.000 0.00 0.00 34.36 3.27
2804 2918 1.296392 CCACCGCCAGAAGATCACA 59.704 57.895 0.00 0.00 0.00 3.58
2823 2937 4.758251 TCGATGCGGGTGCCACTG 62.758 66.667 0.00 0.00 41.78 3.66
2824 2938 4.760047 GTCGATGCGGGTGCCACT 62.760 66.667 0.00 0.00 41.78 4.00
2825 2939 4.760047 AGTCGATGCGGGTGCCAC 62.760 66.667 0.00 0.00 41.78 5.01
2826 2940 3.950794 GAAGTCGATGCGGGTGCCA 62.951 63.158 0.00 0.00 41.78 4.92
2827 2941 3.195698 GAAGTCGATGCGGGTGCC 61.196 66.667 0.00 0.00 41.78 5.01
2828 2942 3.195698 GGAAGTCGATGCGGGTGC 61.196 66.667 0.00 0.00 43.20 5.01
2908 3027 3.943381 TGAGCAATTTCTACATGCAGAGG 59.057 43.478 0.00 0.00 42.45 3.69
2909 3028 5.556355 TTGAGCAATTTCTACATGCAGAG 57.444 39.130 0.00 0.00 42.45 3.35
2957 3081 4.011023 TGAAAATCCGCCCTTTATCGAAA 58.989 39.130 0.00 0.00 0.00 3.46
2958 3082 3.375922 GTGAAAATCCGCCCTTTATCGAA 59.624 43.478 0.00 0.00 0.00 3.71
2959 3083 2.940410 GTGAAAATCCGCCCTTTATCGA 59.060 45.455 0.00 0.00 0.00 3.59
2960 3084 2.680841 TGTGAAAATCCGCCCTTTATCG 59.319 45.455 0.00 0.00 0.00 2.92
2961 3085 3.442273 TGTGTGAAAATCCGCCCTTTATC 59.558 43.478 0.00 0.00 0.00 1.75
2962 3086 3.192633 GTGTGTGAAAATCCGCCCTTTAT 59.807 43.478 0.00 0.00 0.00 1.40
2963 3087 2.554893 GTGTGTGAAAATCCGCCCTTTA 59.445 45.455 0.00 0.00 0.00 1.85
2964 3088 1.339929 GTGTGTGAAAATCCGCCCTTT 59.660 47.619 0.00 0.00 0.00 3.11
2965 3089 0.958822 GTGTGTGAAAATCCGCCCTT 59.041 50.000 0.00 0.00 0.00 3.95
2966 3090 0.893727 GGTGTGTGAAAATCCGCCCT 60.894 55.000 0.00 0.00 0.00 5.19
2967 3091 1.584495 GGTGTGTGAAAATCCGCCC 59.416 57.895 0.00 0.00 0.00 6.13
2968 3092 1.584495 GGGTGTGTGAAAATCCGCC 59.416 57.895 0.00 0.00 0.00 6.13
2969 3093 1.209127 CGGGTGTGTGAAAATCCGC 59.791 57.895 0.00 0.00 0.00 5.54
2970 3094 1.873165 CCGGGTGTGTGAAAATCCG 59.127 57.895 0.00 0.00 37.50 4.18
2971 3095 1.584495 GCCGGGTGTGTGAAAATCC 59.416 57.895 2.18 0.00 0.00 3.01
2972 3096 0.893727 AGGCCGGGTGTGTGAAAATC 60.894 55.000 2.18 0.00 0.00 2.17
2973 3097 0.893727 GAGGCCGGGTGTGTGAAAAT 60.894 55.000 2.18 0.00 0.00 1.82
2974 3098 1.527380 GAGGCCGGGTGTGTGAAAA 60.527 57.895 2.18 0.00 0.00 2.29
2975 3099 2.112297 GAGGCCGGGTGTGTGAAA 59.888 61.111 2.18 0.00 0.00 2.69
2976 3100 2.847234 AGAGGCCGGGTGTGTGAA 60.847 61.111 2.18 0.00 0.00 3.18
2977 3101 3.625897 CAGAGGCCGGGTGTGTGA 61.626 66.667 2.18 0.00 0.00 3.58
2980 3104 2.535485 TTATGCAGAGGCCGGGTGTG 62.535 60.000 2.18 0.00 40.13 3.82
2981 3105 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
2982 3106 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
2983 3107 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
2984 3108 0.034059 CTAGTTATGCAGAGGCCGGG 59.966 60.000 2.18 0.00 40.13 5.73
2985 3109 0.034059 CCTAGTTATGCAGAGGCCGG 59.966 60.000 0.00 0.00 40.13 6.13
2986 3110 1.040646 TCCTAGTTATGCAGAGGCCG 58.959 55.000 0.00 0.00 40.13 6.13
2987 3111 3.051081 CATCCTAGTTATGCAGAGGCC 57.949 52.381 0.00 0.00 40.13 5.19
2995 3119 4.260985 TGGTTGTGTGCATCCTAGTTATG 58.739 43.478 0.00 0.00 35.89 1.90
2996 3120 4.568072 TGGTTGTGTGCATCCTAGTTAT 57.432 40.909 0.00 0.00 35.89 1.89
2997 3121 4.359434 TTGGTTGTGTGCATCCTAGTTA 57.641 40.909 0.00 0.00 35.89 2.24
2998 3122 2.949177 TGGTTGTGTGCATCCTAGTT 57.051 45.000 0.00 0.00 35.89 2.24
2999 3123 2.949177 TTGGTTGTGTGCATCCTAGT 57.051 45.000 0.00 0.00 35.89 2.57
3000 3124 4.517285 AGTATTGGTTGTGTGCATCCTAG 58.483 43.478 0.00 0.00 35.89 3.02
3001 3125 4.568072 AGTATTGGTTGTGTGCATCCTA 57.432 40.909 0.00 0.00 35.89 2.94
3002 3126 3.439857 AGTATTGGTTGTGTGCATCCT 57.560 42.857 0.00 0.00 35.89 3.24
3003 3127 4.457603 TGTTAGTATTGGTTGTGTGCATCC 59.542 41.667 0.00 0.00 35.54 3.51
3004 3128 5.049060 TGTGTTAGTATTGGTTGTGTGCATC 60.049 40.000 0.00 0.00 0.00 3.91
3005 3129 4.824537 TGTGTTAGTATTGGTTGTGTGCAT 59.175 37.500 0.00 0.00 0.00 3.96
3006 3130 4.035792 GTGTGTTAGTATTGGTTGTGTGCA 59.964 41.667 0.00 0.00 0.00 4.57
3007 3131 4.035792 TGTGTGTTAGTATTGGTTGTGTGC 59.964 41.667 0.00 0.00 0.00 4.57
3008 3132 5.065346 TGTGTGTGTTAGTATTGGTTGTGTG 59.935 40.000 0.00 0.00 0.00 3.82
3009 3133 5.186942 TGTGTGTGTTAGTATTGGTTGTGT 58.813 37.500 0.00 0.00 0.00 3.72
3010 3134 5.743026 TGTGTGTGTTAGTATTGGTTGTG 57.257 39.130 0.00 0.00 0.00 3.33
3011 3135 6.761099 TTTGTGTGTGTTAGTATTGGTTGT 57.239 33.333 0.00 0.00 0.00 3.32
3012 3136 6.198216 GCTTTTGTGTGTGTTAGTATTGGTTG 59.802 38.462 0.00 0.00 0.00 3.77
3013 3137 6.127591 TGCTTTTGTGTGTGTTAGTATTGGTT 60.128 34.615 0.00 0.00 0.00 3.67
3014 3138 5.358442 TGCTTTTGTGTGTGTTAGTATTGGT 59.642 36.000 0.00 0.00 0.00 3.67
3015 3139 5.685511 GTGCTTTTGTGTGTGTTAGTATTGG 59.314 40.000 0.00 0.00 0.00 3.16
3016 3140 6.196353 GTGTGCTTTTGTGTGTGTTAGTATTG 59.804 38.462 0.00 0.00 0.00 1.90
3017 3141 6.262601 GTGTGCTTTTGTGTGTGTTAGTATT 58.737 36.000 0.00 0.00 0.00 1.89
3018 3142 5.503357 CGTGTGCTTTTGTGTGTGTTAGTAT 60.503 40.000 0.00 0.00 0.00 2.12
3019 3143 4.201734 CGTGTGCTTTTGTGTGTGTTAGTA 60.202 41.667 0.00 0.00 0.00 1.82
3020 3144 3.425625 CGTGTGCTTTTGTGTGTGTTAGT 60.426 43.478 0.00 0.00 0.00 2.24
3021 3145 3.097910 CGTGTGCTTTTGTGTGTGTTAG 58.902 45.455 0.00 0.00 0.00 2.34
3022 3146 2.729467 GCGTGTGCTTTTGTGTGTGTTA 60.729 45.455 0.00 0.00 38.39 2.41
3023 3147 1.975837 CGTGTGCTTTTGTGTGTGTT 58.024 45.000 0.00 0.00 0.00 3.32
3024 3148 0.455972 GCGTGTGCTTTTGTGTGTGT 60.456 50.000 0.00 0.00 38.39 3.72
3025 3149 1.462871 CGCGTGTGCTTTTGTGTGTG 61.463 55.000 0.00 0.00 39.65 3.82
3026 3150 1.226267 CGCGTGTGCTTTTGTGTGT 60.226 52.632 0.00 0.00 39.65 3.72
3027 3151 1.938814 CCGCGTGTGCTTTTGTGTG 60.939 57.895 4.92 0.00 39.65 3.82
3028 3152 2.407210 CCGCGTGTGCTTTTGTGT 59.593 55.556 4.92 0.00 39.65 3.72
3029 3153 2.353376 CCCGCGTGTGCTTTTGTG 60.353 61.111 4.92 0.00 39.65 3.33
3030 3154 4.264638 GCCCGCGTGTGCTTTTGT 62.265 61.111 4.92 0.00 39.65 2.83
3031 3155 3.764810 TTGCCCGCGTGTGCTTTTG 62.765 57.895 4.92 0.00 39.65 2.44
3032 3156 2.362329 ATTTGCCCGCGTGTGCTTTT 62.362 50.000 4.92 0.00 39.65 2.27
3033 3157 1.519751 TATTTGCCCGCGTGTGCTTT 61.520 50.000 4.92 0.00 39.65 3.51
3034 3158 1.922135 CTATTTGCCCGCGTGTGCTT 61.922 55.000 4.92 0.00 39.65 3.91
3035 3159 2.359354 TATTTGCCCGCGTGTGCT 60.359 55.556 4.92 0.00 39.65 4.40
3036 3160 2.100216 CTATTTGCCCGCGTGTGC 59.900 61.111 4.92 5.36 37.91 4.57
3037 3161 2.100216 GCTATTTGCCCGCGTGTG 59.900 61.111 4.92 0.00 35.15 3.82
3038 3162 1.519751 TTTGCTATTTGCCCGCGTGT 61.520 50.000 4.92 0.00 42.00 4.49
3039 3163 0.798009 CTTTGCTATTTGCCCGCGTG 60.798 55.000 4.92 0.00 42.00 5.34
3040 3164 1.241315 ACTTTGCTATTTGCCCGCGT 61.241 50.000 4.92 0.00 42.00 6.01
3041 3165 0.523335 GACTTTGCTATTTGCCCGCG 60.523 55.000 0.00 0.00 42.00 6.46
3042 3166 0.525761 TGACTTTGCTATTTGCCCGC 59.474 50.000 0.00 0.00 42.00 6.13
3043 3167 4.836125 ATATGACTTTGCTATTTGCCCG 57.164 40.909 0.00 0.00 42.00 6.13
3044 3168 7.363431 GTCTTATATGACTTTGCTATTTGCCC 58.637 38.462 10.70 0.00 36.08 5.36
3045 3169 7.229506 AGGTCTTATATGACTTTGCTATTTGCC 59.770 37.037 15.98 0.00 37.72 4.52
3046 3170 8.159344 AGGTCTTATATGACTTTGCTATTTGC 57.841 34.615 15.98 0.00 38.36 3.68
3049 3173 9.495572 GCTTAGGTCTTATATGACTTTGCTATT 57.504 33.333 15.98 0.00 37.16 1.73
3050 3174 8.875168 AGCTTAGGTCTTATATGACTTTGCTAT 58.125 33.333 19.19 6.77 35.14 2.97
3051 3175 8.251383 AGCTTAGGTCTTATATGACTTTGCTA 57.749 34.615 19.19 11.01 35.14 3.49
3052 3176 7.130681 AGCTTAGGTCTTATATGACTTTGCT 57.869 36.000 15.98 16.57 37.16 3.91
3053 3177 8.930760 CATAGCTTAGGTCTTATATGACTTTGC 58.069 37.037 15.98 15.12 37.16 3.68
3054 3178 8.930760 GCATAGCTTAGGTCTTATATGACTTTG 58.069 37.037 15.98 6.29 37.16 2.77
3055 3179 8.651389 TGCATAGCTTAGGTCTTATATGACTTT 58.349 33.333 15.98 9.12 37.16 2.66
3056 3180 8.195165 TGCATAGCTTAGGTCTTATATGACTT 57.805 34.615 15.98 12.17 37.16 3.01
3057 3181 7.782897 TGCATAGCTTAGGTCTTATATGACT 57.217 36.000 15.98 7.14 37.16 3.41
3060 3184 8.986847 GCATATGCATAGCTTAGGTCTTATATG 58.013 37.037 22.84 1.89 41.59 1.78
3061 3185 7.869937 CGCATATGCATAGCTTAGGTCTTATAT 59.130 37.037 26.52 0.00 42.21 0.86
3062 3186 7.068226 TCGCATATGCATAGCTTAGGTCTTATA 59.932 37.037 26.52 0.00 42.21 0.98
3063 3187 6.045318 CGCATATGCATAGCTTAGGTCTTAT 58.955 40.000 26.52 0.00 42.21 1.73
3064 3188 5.185056 TCGCATATGCATAGCTTAGGTCTTA 59.815 40.000 26.52 0.00 42.21 2.10
3065 3189 4.021104 TCGCATATGCATAGCTTAGGTCTT 60.021 41.667 26.52 0.00 42.21 3.01
3066 3190 3.511540 TCGCATATGCATAGCTTAGGTCT 59.488 43.478 26.52 0.00 42.21 3.85
3067 3191 3.849911 TCGCATATGCATAGCTTAGGTC 58.150 45.455 26.52 0.00 42.21 3.85
3068 3192 3.368843 CCTCGCATATGCATAGCTTAGGT 60.369 47.826 26.52 0.00 42.21 3.08
3069 3193 3.193263 CCTCGCATATGCATAGCTTAGG 58.807 50.000 26.52 17.36 42.21 2.69
3070 3194 2.606725 GCCTCGCATATGCATAGCTTAG 59.393 50.000 26.52 13.54 42.21 2.18
3071 3195 2.028203 TGCCTCGCATATGCATAGCTTA 60.028 45.455 26.52 8.32 42.21 3.09
3072 3196 1.271001 TGCCTCGCATATGCATAGCTT 60.271 47.619 26.52 0.00 42.21 3.74
3073 3197 0.322648 TGCCTCGCATATGCATAGCT 59.677 50.000 26.52 0.00 42.21 3.32
3074 3198 1.159285 TTGCCTCGCATATGCATAGC 58.841 50.000 26.52 22.98 38.76 2.97
3075 3199 3.902261 TTTTGCCTCGCATATGCATAG 57.098 42.857 26.52 21.02 38.76 2.23
3110 3234 2.827800 TGCCGATCAAGGATCTGATC 57.172 50.000 9.18 9.18 45.57 2.92
3111 3235 3.118112 AGTTTGCCGATCAAGGATCTGAT 60.118 43.478 4.86 0.00 38.79 2.90
3112 3236 2.237143 AGTTTGCCGATCAAGGATCTGA 59.763 45.455 4.86 0.00 36.96 3.27
3113 3237 2.636830 AGTTTGCCGATCAAGGATCTG 58.363 47.619 4.86 0.00 36.96 2.90
3114 3238 4.696479 ATAGTTTGCCGATCAAGGATCT 57.304 40.909 4.86 0.00 36.96 2.75
3115 3239 4.932200 CCTATAGTTTGCCGATCAAGGATC 59.068 45.833 0.00 0.00 35.84 3.36
3116 3240 4.593206 TCCTATAGTTTGCCGATCAAGGAT 59.407 41.667 0.00 0.00 35.84 3.24
3117 3241 3.964688 TCCTATAGTTTGCCGATCAAGGA 59.035 43.478 0.00 0.00 35.84 3.36
3118 3242 4.336889 TCCTATAGTTTGCCGATCAAGG 57.663 45.455 0.00 0.00 35.84 3.61
3119 3243 6.018669 GTCTTTCCTATAGTTTGCCGATCAAG 60.019 42.308 0.00 0.00 35.84 3.02
3120 3244 5.815740 GTCTTTCCTATAGTTTGCCGATCAA 59.184 40.000 0.00 0.00 0.00 2.57
3121 3245 5.357257 GTCTTTCCTATAGTTTGCCGATCA 58.643 41.667 0.00 0.00 0.00 2.92
3122 3246 4.750598 GGTCTTTCCTATAGTTTGCCGATC 59.249 45.833 0.00 0.00 0.00 3.69
3123 3247 4.163458 TGGTCTTTCCTATAGTTTGCCGAT 59.837 41.667 0.00 0.00 37.07 4.18
3124 3248 3.516300 TGGTCTTTCCTATAGTTTGCCGA 59.484 43.478 0.00 0.00 37.07 5.54
3125 3249 3.869065 TGGTCTTTCCTATAGTTTGCCG 58.131 45.455 0.00 0.00 37.07 5.69
3126 3250 6.655425 GGATATGGTCTTTCCTATAGTTTGCC 59.345 42.308 0.00 0.00 37.07 4.52
3127 3251 6.369065 CGGATATGGTCTTTCCTATAGTTTGC 59.631 42.308 0.00 0.00 37.07 3.68
3128 3252 6.369065 GCGGATATGGTCTTTCCTATAGTTTG 59.631 42.308 0.00 0.00 37.07 2.93
3129 3253 6.042781 TGCGGATATGGTCTTTCCTATAGTTT 59.957 38.462 0.00 0.00 37.07 2.66
3130 3254 5.542635 TGCGGATATGGTCTTTCCTATAGTT 59.457 40.000 0.00 0.00 37.07 2.24
3131 3255 5.047235 GTGCGGATATGGTCTTTCCTATAGT 60.047 44.000 0.00 0.00 37.07 2.12
3132 3256 5.411781 GTGCGGATATGGTCTTTCCTATAG 58.588 45.833 0.00 0.00 37.07 1.31
3133 3257 4.222145 GGTGCGGATATGGTCTTTCCTATA 59.778 45.833 0.00 0.00 37.07 1.31
3134 3258 3.008049 GGTGCGGATATGGTCTTTCCTAT 59.992 47.826 0.00 0.00 37.07 2.57
3135 3259 2.367567 GGTGCGGATATGGTCTTTCCTA 59.632 50.000 0.00 0.00 37.07 2.94
3136 3260 1.141053 GGTGCGGATATGGTCTTTCCT 59.859 52.381 0.00 0.00 37.07 3.36
3137 3261 1.134220 TGGTGCGGATATGGTCTTTCC 60.134 52.381 0.00 0.00 0.00 3.13
3138 3262 2.325583 TGGTGCGGATATGGTCTTTC 57.674 50.000 0.00 0.00 0.00 2.62
3139 3263 2.365582 GTTGGTGCGGATATGGTCTTT 58.634 47.619 0.00 0.00 0.00 2.52
3140 3264 1.408266 GGTTGGTGCGGATATGGTCTT 60.408 52.381 0.00 0.00 0.00 3.01
3141 3265 0.180406 GGTTGGTGCGGATATGGTCT 59.820 55.000 0.00 0.00 0.00 3.85
3142 3266 0.107410 TGGTTGGTGCGGATATGGTC 60.107 55.000 0.00 0.00 0.00 4.02
3143 3267 0.550914 ATGGTTGGTGCGGATATGGT 59.449 50.000 0.00 0.00 0.00 3.55
3144 3268 1.202806 AGATGGTTGGTGCGGATATGG 60.203 52.381 0.00 0.00 0.00 2.74
3145 3269 2.146342 GAGATGGTTGGTGCGGATATG 58.854 52.381 0.00 0.00 0.00 1.78
3146 3270 1.768275 TGAGATGGTTGGTGCGGATAT 59.232 47.619 0.00 0.00 0.00 1.63
3147 3271 1.199615 TGAGATGGTTGGTGCGGATA 58.800 50.000 0.00 0.00 0.00 2.59
3148 3272 0.548031 ATGAGATGGTTGGTGCGGAT 59.452 50.000 0.00 0.00 0.00 4.18
3149 3273 0.392863 CATGAGATGGTTGGTGCGGA 60.393 55.000 0.00 0.00 0.00 5.54
3150 3274 0.392863 TCATGAGATGGTTGGTGCGG 60.393 55.000 0.00 0.00 0.00 5.69
3151 3275 0.729116 GTCATGAGATGGTTGGTGCG 59.271 55.000 0.00 0.00 0.00 5.34
3152 3276 1.825090 TGTCATGAGATGGTTGGTGC 58.175 50.000 0.00 0.00 0.00 5.01
3153 3277 3.058016 GTGTTGTCATGAGATGGTTGGTG 60.058 47.826 0.00 0.00 0.00 4.17
3154 3278 3.149196 GTGTTGTCATGAGATGGTTGGT 58.851 45.455 0.00 0.00 0.00 3.67
3155 3279 2.160219 CGTGTTGTCATGAGATGGTTGG 59.840 50.000 0.00 0.00 32.78 3.77
3156 3280 2.807967 ACGTGTTGTCATGAGATGGTTG 59.192 45.455 0.00 0.00 34.90 3.77
3157 3281 2.807967 CACGTGTTGTCATGAGATGGTT 59.192 45.455 7.58 0.00 34.90 3.67
3158 3282 2.037121 TCACGTGTTGTCATGAGATGGT 59.963 45.455 16.51 0.00 34.90 3.55
3159 3283 2.687370 TCACGTGTTGTCATGAGATGG 58.313 47.619 16.51 0.00 34.90 3.51
3160 3284 3.422214 CGTTCACGTGTTGTCATGAGATG 60.422 47.826 16.51 0.00 32.19 2.90
3161 3285 2.731451 CGTTCACGTGTTGTCATGAGAT 59.269 45.455 16.51 0.00 32.19 2.75
3162 3286 2.124122 CGTTCACGTGTTGTCATGAGA 58.876 47.619 16.51 0.00 34.90 3.27
3163 3287 2.097396 GTCGTTCACGTGTTGTCATGAG 60.097 50.000 16.51 0.00 40.80 2.90
3164 3288 1.855978 GTCGTTCACGTGTTGTCATGA 59.144 47.619 16.51 0.00 40.80 3.07
3165 3289 1.395449 CGTCGTTCACGTGTTGTCATG 60.395 52.381 16.51 1.85 44.07 3.07
3166 3290 0.850217 CGTCGTTCACGTGTTGTCAT 59.150 50.000 16.51 0.00 44.07 3.06
3167 3291 2.280413 CGTCGTTCACGTGTTGTCA 58.720 52.632 16.51 0.00 44.07 3.58
3176 3300 3.734231 TGTTGAAGAATCTCGTCGTTCAC 59.266 43.478 0.00 0.00 0.00 3.18
3177 3301 3.972403 TGTTGAAGAATCTCGTCGTTCA 58.028 40.909 0.00 0.00 0.00 3.18
3178 3302 3.181539 GCTGTTGAAGAATCTCGTCGTTC 60.182 47.826 0.00 0.00 0.00 3.95
3179 3303 2.731976 GCTGTTGAAGAATCTCGTCGTT 59.268 45.455 0.00 0.00 0.00 3.85
3180 3304 2.288213 TGCTGTTGAAGAATCTCGTCGT 60.288 45.455 0.00 0.00 0.00 4.34
3181 3305 2.328473 TGCTGTTGAAGAATCTCGTCG 58.672 47.619 0.00 0.00 0.00 5.12
3182 3306 3.422343 CGTTGCTGTTGAAGAATCTCGTC 60.422 47.826 0.00 0.00 0.00 4.20
3183 3307 2.476619 CGTTGCTGTTGAAGAATCTCGT 59.523 45.455 0.00 0.00 0.00 4.18
3184 3308 2.723010 GCGTTGCTGTTGAAGAATCTCG 60.723 50.000 0.00 0.00 0.00 4.04
3185 3309 2.413371 GGCGTTGCTGTTGAAGAATCTC 60.413 50.000 0.00 0.00 0.00 2.75
3186 3310 1.537202 GGCGTTGCTGTTGAAGAATCT 59.463 47.619 0.00 0.00 0.00 2.40
3187 3311 1.537202 AGGCGTTGCTGTTGAAGAATC 59.463 47.619 0.00 0.00 0.00 2.52
3188 3312 1.609208 AGGCGTTGCTGTTGAAGAAT 58.391 45.000 0.00 0.00 0.00 2.40
3189 3313 1.333619 GAAGGCGTTGCTGTTGAAGAA 59.666 47.619 0.00 0.00 0.00 2.52
3190 3314 0.944386 GAAGGCGTTGCTGTTGAAGA 59.056 50.000 0.00 0.00 0.00 2.87
3191 3315 0.662619 TGAAGGCGTTGCTGTTGAAG 59.337 50.000 0.00 0.00 0.00 3.02
3192 3316 0.380378 GTGAAGGCGTTGCTGTTGAA 59.620 50.000 0.00 0.00 0.00 2.69
3193 3317 0.746204 TGTGAAGGCGTTGCTGTTGA 60.746 50.000 0.00 0.00 0.00 3.18
3194 3318 0.100325 TTGTGAAGGCGTTGCTGTTG 59.900 50.000 0.00 0.00 0.00 3.33
3195 3319 0.814457 TTTGTGAAGGCGTTGCTGTT 59.186 45.000 0.00 0.00 0.00 3.16
3196 3320 0.814457 TTTTGTGAAGGCGTTGCTGT 59.186 45.000 0.00 0.00 0.00 4.40
3197 3321 1.480205 CTTTTGTGAAGGCGTTGCTG 58.520 50.000 0.00 0.00 0.00 4.41
3198 3322 0.385390 CCTTTTGTGAAGGCGTTGCT 59.615 50.000 0.00 0.00 0.00 3.91
3199 3323 0.383949 TCCTTTTGTGAAGGCGTTGC 59.616 50.000 0.00 0.00 37.34 4.17
3200 3324 1.600413 GCTCCTTTTGTGAAGGCGTTG 60.600 52.381 0.00 0.00 37.34 4.10
3201 3325 0.668535 GCTCCTTTTGTGAAGGCGTT 59.331 50.000 0.00 0.00 37.34 4.84
3202 3326 0.465460 TGCTCCTTTTGTGAAGGCGT 60.465 50.000 0.00 0.00 37.34 5.68
3203 3327 0.667993 TTGCTCCTTTTGTGAAGGCG 59.332 50.000 0.00 0.00 37.34 5.52
3204 3328 1.600413 CGTTGCTCCTTTTGTGAAGGC 60.600 52.381 0.00 0.00 37.34 4.35
3205 3329 1.600413 GCGTTGCTCCTTTTGTGAAGG 60.600 52.381 0.00 0.00 38.78 3.46
3206 3330 1.334869 AGCGTTGCTCCTTTTGTGAAG 59.665 47.619 0.00 0.00 30.62 3.02
3207 3331 1.388547 AGCGTTGCTCCTTTTGTGAA 58.611 45.000 0.00 0.00 30.62 3.18
3208 3332 1.388547 AAGCGTTGCTCCTTTTGTGA 58.611 45.000 0.00 0.00 38.25 3.58
3209 3333 2.350772 CCTAAGCGTTGCTCCTTTTGTG 60.351 50.000 0.00 0.00 38.25 3.33
3210 3334 1.880027 CCTAAGCGTTGCTCCTTTTGT 59.120 47.619 0.00 0.00 38.25 2.83
3211 3335 1.401539 GCCTAAGCGTTGCTCCTTTTG 60.402 52.381 0.00 0.00 38.25 2.44
3212 3336 0.881796 GCCTAAGCGTTGCTCCTTTT 59.118 50.000 0.00 0.00 38.25 2.27
3213 3337 2.556286 GCCTAAGCGTTGCTCCTTT 58.444 52.632 0.00 0.00 38.25 3.11
3214 3338 4.303257 GCCTAAGCGTTGCTCCTT 57.697 55.556 0.00 0.00 38.25 3.36
3225 3349 3.188786 GTGACGCAGGCGCCTAAG 61.189 66.667 32.30 27.14 44.19 2.18
3226 3350 4.752879 GGTGACGCAGGCGCCTAA 62.753 66.667 32.30 9.87 44.19 2.69
3238 3362 1.376812 GGTGGTTGGATCCGGTGAC 60.377 63.158 7.39 3.15 0.00 3.67
3239 3363 2.949909 CGGTGGTTGGATCCGGTGA 61.950 63.158 7.39 0.00 40.49 4.02
3240 3364 2.435938 CGGTGGTTGGATCCGGTG 60.436 66.667 7.39 0.00 40.49 4.94
3241 3365 2.180159 CTTCGGTGGTTGGATCCGGT 62.180 60.000 7.39 0.00 43.75 5.28
3242 3366 1.449601 CTTCGGTGGTTGGATCCGG 60.450 63.158 7.39 0.00 43.75 5.14
3243 3367 1.449601 CCTTCGGTGGTTGGATCCG 60.450 63.158 7.39 0.00 44.76 4.18
3244 3368 0.546598 ATCCTTCGGTGGTTGGATCC 59.453 55.000 4.20 4.20 34.53 3.36
3245 3369 2.698797 TCTATCCTTCGGTGGTTGGATC 59.301 50.000 0.00 0.00 39.67 3.36
3246 3370 2.759355 TCTATCCTTCGGTGGTTGGAT 58.241 47.619 0.00 0.00 41.59 3.41
3247 3371 2.241281 TCTATCCTTCGGTGGTTGGA 57.759 50.000 0.00 0.00 0.00 3.53
3248 3372 3.134804 AGATTCTATCCTTCGGTGGTTGG 59.865 47.826 0.00 0.00 0.00 3.77
3249 3373 4.408182 AGATTCTATCCTTCGGTGGTTG 57.592 45.455 0.00 0.00 0.00 3.77
3250 3374 4.589374 CCTAGATTCTATCCTTCGGTGGTT 59.411 45.833 0.00 0.00 0.00 3.67
3251 3375 4.153411 CCTAGATTCTATCCTTCGGTGGT 58.847 47.826 0.00 0.00 0.00 4.16
3252 3376 4.153411 ACCTAGATTCTATCCTTCGGTGG 58.847 47.826 0.00 0.00 0.00 4.61
3253 3377 5.793030 AACCTAGATTCTATCCTTCGGTG 57.207 43.478 0.00 0.00 0.00 4.94
3254 3378 6.383147 TGAAAACCTAGATTCTATCCTTCGGT 59.617 38.462 0.00 0.00 0.00 4.69
3255 3379 6.702282 GTGAAAACCTAGATTCTATCCTTCGG 59.298 42.308 0.00 0.00 0.00 4.30
3256 3380 6.702282 GGTGAAAACCTAGATTCTATCCTTCG 59.298 42.308 0.00 0.00 0.00 3.79
3257 3381 6.993308 GGGTGAAAACCTAGATTCTATCCTTC 59.007 42.308 0.00 0.00 0.00 3.46
3258 3382 6.678857 AGGGTGAAAACCTAGATTCTATCCTT 59.321 38.462 0.00 0.00 36.32 3.36
3259 3383 6.100424 CAGGGTGAAAACCTAGATTCTATCCT 59.900 42.308 0.00 0.26 36.32 3.24
3260 3384 6.099845 TCAGGGTGAAAACCTAGATTCTATCC 59.900 42.308 0.00 0.00 36.32 2.59
3261 3385 7.125792 TCAGGGTGAAAACCTAGATTCTATC 57.874 40.000 0.00 0.00 36.32 2.08
3262 3386 7.403231 TCTTCAGGGTGAAAACCTAGATTCTAT 59.597 37.037 0.00 0.00 35.73 1.98
3263 3387 6.729100 TCTTCAGGGTGAAAACCTAGATTCTA 59.271 38.462 0.00 0.00 35.73 2.10
3264 3388 5.548056 TCTTCAGGGTGAAAACCTAGATTCT 59.452 40.000 0.00 0.00 35.73 2.40
3265 3389 5.805728 TCTTCAGGGTGAAAACCTAGATTC 58.194 41.667 0.00 0.00 35.73 2.52
3266 3390 5.843019 TCTTCAGGGTGAAAACCTAGATT 57.157 39.130 0.00 0.00 35.73 2.40
3267 3391 5.843019 TTCTTCAGGGTGAAAACCTAGAT 57.157 39.130 0.00 0.00 35.73 1.98
3268 3392 5.374071 GTTTCTTCAGGGTGAAAACCTAGA 58.626 41.667 0.00 0.00 35.73 2.43
3269 3393 4.213482 CGTTTCTTCAGGGTGAAAACCTAG 59.787 45.833 0.00 0.00 35.73 3.02
3270 3394 4.131596 CGTTTCTTCAGGGTGAAAACCTA 58.868 43.478 0.00 0.00 35.73 3.08
3271 3395 2.949644 CGTTTCTTCAGGGTGAAAACCT 59.050 45.455 0.00 0.00 35.73 3.50
3272 3396 3.349488 CGTTTCTTCAGGGTGAAAACC 57.651 47.619 0.00 0.00 35.73 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.