Multiple sequence alignment - TraesCS1D01G241200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G241200 chr1D 100.000 3624 0 0 1 3624 331915013 331918636 0.000000e+00 6693.0
1 TraesCS1D01G241200 chr1D 100.000 3429 0 0 3876 7304 331918888 331922316 0.000000e+00 6333.0
2 TraesCS1D01G241200 chr1D 93.333 105 6 1 1858 1961 445194842 445194946 3.530000e-33 154.0
3 TraesCS1D01G241200 chr1D 80.214 187 32 1 315 501 127213561 127213380 1.280000e-27 135.0
4 TraesCS1D01G241200 chr1D 82.540 126 22 0 313 438 88222594 88222469 2.150000e-20 111.0
5 TraesCS1D01G241200 chr1B 96.768 3094 72 14 556 3624 446027132 446030222 0.000000e+00 5134.0
6 TraesCS1D01G241200 chr1B 95.615 3170 107 18 3876 7030 446030800 446033952 0.000000e+00 5055.0
7 TraesCS1D01G241200 chr1B 91.837 245 13 4 7062 7302 498381732 498381491 1.170000e-87 335.0
8 TraesCS1D01G241200 chr1B 88.797 241 20 5 55 288 446026858 446027098 9.270000e-74 289.0
9 TraesCS1D01G241200 chr1B 98.148 162 2 1 4173 4333 446030610 446030771 1.550000e-71 281.0
10 TraesCS1D01G241200 chr1B 83.594 128 20 1 311 438 374925619 374925493 1.290000e-22 119.0
11 TraesCS1D01G241200 chr1B 85.714 84 11 1 2613 2696 22876641 22876723 3.630000e-13 87.9
12 TraesCS1D01G241200 chr1A 96.355 1701 45 11 3876 5570 428976589 428978278 0.000000e+00 2782.0
13 TraesCS1D01G241200 chr1A 95.942 1577 30 5 2059 3624 428974506 428976059 0.000000e+00 2527.0
14 TraesCS1D01G241200 chr1A 95.410 1525 45 14 5520 7029 428978267 428979781 0.000000e+00 2405.0
15 TraesCS1D01G241200 chr1A 96.055 1318 39 6 556 1860 428972889 428974206 0.000000e+00 2134.0
16 TraesCS1D01G241200 chr1A 100.000 106 0 0 1961 2066 428974206 428974311 5.780000e-46 196.0
17 TraesCS1D01G241200 chr2B 95.436 241 10 1 7062 7302 776820641 776820402 4.130000e-102 383.0
18 TraesCS1D01G241200 chr2B 80.909 110 14 6 435 537 45530297 45530406 6.070000e-11 80.5
19 TraesCS1D01G241200 chr2B 85.507 69 10 0 433 501 212184575 212184507 1.020000e-08 73.1
20 TraesCS1D01G241200 chr6B 94.737 190 8 1 7062 7249 260775113 260775302 1.990000e-75 294.0
21 TraesCS1D01G241200 chr6B 85.827 254 24 4 7062 7303 115052399 115052652 7.270000e-65 259.0
22 TraesCS1D01G241200 chr6B 86.842 76 8 1 2616 2691 545202807 545202880 4.700000e-12 84.2
23 TraesCS1D01G241200 chr3D 87.747 253 19 4 7062 7304 397972402 397972652 1.200000e-72 285.0
24 TraesCS1D01G241200 chr3D 82.927 123 21 0 315 437 527520542 527520420 2.150000e-20 111.0
25 TraesCS1D01G241200 chr3B 92.958 142 8 1 7063 7202 785655603 785655744 9.610000e-49 206.0
26 TraesCS1D01G241200 chr2D 93.458 107 6 1 1859 1964 335687112 335687006 2.730000e-34 158.0
27 TraesCS1D01G241200 chr2D 87.302 126 13 3 1850 1972 628843051 628842926 2.750000e-29 141.0
28 TraesCS1D01G241200 chr2D 90.541 74 4 1 2616 2689 145889969 145889899 2.170000e-15 95.3
29 TraesCS1D01G241200 chr4D 92.727 110 4 4 1857 1964 83148206 83148099 9.810000e-34 156.0
30 TraesCS1D01G241200 chr3A 89.062 128 11 3 1839 1964 697447651 697447777 9.810000e-34 156.0
31 TraesCS1D01G241200 chr3A 91.071 112 8 2 1858 1967 53215403 53215292 4.560000e-32 150.0
32 TraesCS1D01G241200 chr2A 92.523 107 7 1 1859 1964 446069393 446069287 1.270000e-32 152.0
33 TraesCS1D01G241200 chr2A 82.677 127 22 0 315 441 620676121 620675995 5.990000e-21 113.0
34 TraesCS1D01G241200 chr2A 90.541 74 4 1 2616 2689 156370798 156370868 2.170000e-15 95.3
35 TraesCS1D01G241200 chr2A 84.524 84 9 2 2605 2688 156370877 156370798 6.070000e-11 80.5
36 TraesCS1D01G241200 chr6D 91.589 107 9 0 1859 1965 41405582 41405476 1.640000e-31 148.0
37 TraesCS1D01G241200 chr4B 84.800 125 17 2 315 438 181683260 181683137 2.770000e-24 124.0
38 TraesCS1D01G241200 chr7D 84.127 126 20 0 313 438 585604261 585604386 9.950000e-24 122.0
39 TraesCS1D01G241200 chr7D 84.426 122 19 0 317 438 467986567 467986446 3.580000e-23 121.0
40 TraesCS1D01G241200 chr5D 83.594 128 20 1 311 438 531255096 531254970 1.290000e-22 119.0
41 TraesCS1D01G241200 chr5D 95.000 60 3 0 2627 2686 351795691 351795632 2.170000e-15 95.3
42 TraesCS1D01G241200 chr5A 95.082 61 3 0 2627 2687 452113493 452113433 6.030000e-16 97.1
43 TraesCS1D01G241200 chr4A 95.556 45 2 0 7177 7221 513346101 513346057 1.020000e-08 73.1
44 TraesCS1D01G241200 chr4A 76.515 132 19 10 7177 7304 744271080 744270957 2.200000e-05 62.1
45 TraesCS1D01G241200 chr6A 95.349 43 2 0 7174 7216 453948175 453948217 1.310000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G241200 chr1D 331915013 331922316 7303 False 6513.00 6693 100.0000 1 7304 2 chr1D.!!$F2 7303
1 TraesCS1D01G241200 chr1B 446026858 446033952 7094 False 2689.75 5134 94.8320 55 7030 4 chr1B.!!$F2 6975
2 TraesCS1D01G241200 chr1A 428972889 428979781 6892 False 2008.80 2782 96.7524 556 7029 5 chr1A.!!$F1 6473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 353 0.242825 AGTACAGACGCAAGCGCTTA 59.757 50.000 24.55 0.72 44.19 3.09 F
521 529 0.243636 GCACGGGGACTTGAAAATGG 59.756 55.000 0.00 0.00 0.00 3.16 F
1092 1115 0.524862 TCGCGACCTACAACTTCCTC 59.475 55.000 3.71 0.00 0.00 3.71 F
1332 1355 1.519455 CACGCGGATCCTTCACTCC 60.519 63.158 12.47 0.00 0.00 3.85 F
1687 1714 2.232208 GCCTTTGCCAAACTTAGCTCAT 59.768 45.455 0.00 0.00 0.00 2.90 F
1932 1959 2.498167 ACAGTTCAATGTCAGCTGTCC 58.502 47.619 14.67 6.40 35.78 4.02 F
3458 3702 2.759795 GTGGCAAGCTCCTCCCTT 59.240 61.111 0.00 0.00 0.00 3.95 F
4576 5147 0.449388 CGTCTGAGGTACCCGTGTAC 59.551 60.000 8.74 0.00 45.46 2.90 F
4585 5156 0.686224 TACCCGTGTACAAGGTTGGG 59.314 55.000 23.77 18.32 42.50 4.12 F
5091 5668 2.035449 TCTGTACACAAGTTCCTGGTCG 59.965 50.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 1528 1.727062 ACCATTGGACAAATGCCCAA 58.273 45.000 10.37 3.59 43.80 4.12 R
2418 2649 1.001815 CTGCCACAAACAAACTACGGG 60.002 52.381 0.00 0.00 0.00 5.28 R
2912 3143 3.670203 GAAATGGCATTTCGTCGTACTG 58.330 45.455 30.66 0.00 39.23 2.74 R
3225 3465 1.812922 GCCTCGCCATGACTCACTG 60.813 63.158 0.00 0.00 0.00 3.66 R
3458 3702 3.490439 TGCCATCTTTCTCACAGAACA 57.510 42.857 0.00 0.00 33.26 3.18 R
3491 3735 4.040339 AGGGGCTCTTGGTTGTTTAATTTG 59.960 41.667 0.00 0.00 0.00 2.32 R
5164 5741 0.034089 ATAGACCTGGCTGGGTTTGC 60.034 55.000 15.36 0.00 40.06 3.68 R
5424 6001 1.196104 AGGTGCTAGTGCCCCGTTAA 61.196 55.000 0.00 0.00 41.75 2.01 R
5736 6352 2.159517 GGAAACTTGCATAAGGACGCTG 60.160 50.000 0.00 0.00 38.26 5.18 R
7084 7718 0.036858 GCCACTTCTCCTGGACACTC 60.037 60.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.580815 CACGCCTCTGCTCATCCA 59.419 61.111 0.00 0.00 34.43 3.41
18 19 1.812922 CACGCCTCTGCTCATCCAC 60.813 63.158 0.00 0.00 34.43 4.02
19 20 2.202987 CGCCTCTGCTCATCCACC 60.203 66.667 0.00 0.00 34.43 4.61
20 21 2.729479 CGCCTCTGCTCATCCACCT 61.729 63.158 0.00 0.00 34.43 4.00
21 22 1.145819 GCCTCTGCTCATCCACCTC 59.854 63.158 0.00 0.00 33.53 3.85
22 23 1.440893 CCTCTGCTCATCCACCTCG 59.559 63.158 0.00 0.00 0.00 4.63
23 24 1.440893 CTCTGCTCATCCACCTCGG 59.559 63.158 0.00 0.00 0.00 4.63
24 25 1.305297 TCTGCTCATCCACCTCGGT 60.305 57.895 0.00 0.00 35.57 4.69
25 26 1.153489 CTGCTCATCCACCTCGGTG 60.153 63.158 9.13 9.13 45.02 4.94
34 35 2.997897 ACCTCGGTGAGCCTCCAC 60.998 66.667 0.00 0.00 36.37 4.02
40 41 4.767255 GTGAGCCTCCACCAGCGG 62.767 72.222 0.00 0.00 0.00 5.52
71 72 1.815003 CGCCCTTGACGATGATGCA 60.815 57.895 0.00 0.00 0.00 3.96
73 74 0.745845 GCCCTTGACGATGATGCAGT 60.746 55.000 0.00 0.00 0.00 4.40
82 83 4.455190 TGACGATGATGCAGTCAAATTTGA 59.545 37.500 16.91 16.91 41.30 2.69
110 111 5.178096 ACCATCATTACAAGTCCACATGA 57.822 39.130 0.00 0.00 0.00 3.07
140 141 2.239400 TGAAGCGAAGAGGAGAAGTGA 58.761 47.619 0.00 0.00 0.00 3.41
146 147 3.860536 GCGAAGAGGAGAAGTGACAATAC 59.139 47.826 0.00 0.00 0.00 1.89
150 151 4.087182 AGAGGAGAAGTGACAATACGGAA 58.913 43.478 0.00 0.00 0.00 4.30
180 181 1.962306 GGCGTGCGAGGGTTTGTTA 60.962 57.895 0.00 0.00 0.00 2.41
216 220 9.530129 CAACACACGAACTTTTTCTAGATTATC 57.470 33.333 0.00 0.00 0.00 1.75
218 222 8.709646 ACACACGAACTTTTTCTAGATTATCAC 58.290 33.333 0.00 0.00 0.00 3.06
288 296 8.827832 TGGAACATTCTATCCATCTGATTTTT 57.172 30.769 0.00 0.00 40.74 1.94
293 301 9.872684 ACATTCTATCCATCTGATTTTTATGGT 57.127 29.630 0.00 0.00 40.88 3.55
305 313 9.407380 TCTGATTTTTATGGTTATACATGTGCT 57.593 29.630 9.11 0.00 32.39 4.40
306 314 9.669353 CTGATTTTTATGGTTATACATGTGCTC 57.331 33.333 9.11 0.00 32.39 4.26
307 315 9.407380 TGATTTTTATGGTTATACATGTGCTCT 57.593 29.630 9.11 0.00 32.39 4.09
311 319 8.671384 TTTATGGTTATACATGTGCTCTTACC 57.329 34.615 9.11 7.85 32.39 2.85
312 320 5.950544 TGGTTATACATGTGCTCTTACCT 57.049 39.130 9.11 0.00 0.00 3.08
316 324 6.598064 GGTTATACATGTGCTCTTACCTGTTT 59.402 38.462 9.11 0.00 32.77 2.83
317 325 7.120726 GGTTATACATGTGCTCTTACCTGTTTT 59.879 37.037 9.11 0.00 32.77 2.43
318 326 8.512138 GTTATACATGTGCTCTTACCTGTTTTT 58.488 33.333 9.11 0.00 32.77 1.94
337 345 5.798015 TTTTTAAACACAGTACAGACGCA 57.202 34.783 0.00 0.00 0.00 5.24
338 346 5.798015 TTTTAAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
340 348 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
341 349 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
342 350 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
343 351 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
344 352 1.006102 AGTACAGACGCAAGCGCTT 60.006 52.632 18.98 18.98 44.19 4.68
345 353 0.242825 AGTACAGACGCAAGCGCTTA 59.757 50.000 24.55 0.72 44.19 3.09
346 354 1.135083 AGTACAGACGCAAGCGCTTAT 60.135 47.619 24.55 11.59 44.19 1.73
347 355 2.098607 AGTACAGACGCAAGCGCTTATA 59.901 45.455 24.55 4.12 44.19 0.98
348 356 1.278238 ACAGACGCAAGCGCTTATAC 58.722 50.000 24.55 14.27 44.19 1.47
349 357 1.277326 CAGACGCAAGCGCTTATACA 58.723 50.000 24.55 0.00 44.19 2.29
350 358 1.860950 CAGACGCAAGCGCTTATACAT 59.139 47.619 24.55 3.49 44.19 2.29
351 359 3.049912 CAGACGCAAGCGCTTATACATA 58.950 45.455 24.55 0.00 44.19 2.29
352 360 3.675225 CAGACGCAAGCGCTTATACATAT 59.325 43.478 24.55 4.09 44.19 1.78
353 361 3.675225 AGACGCAAGCGCTTATACATATG 59.325 43.478 24.55 9.91 44.19 1.78
354 362 3.390135 ACGCAAGCGCTTATACATATGT 58.610 40.909 24.55 13.93 44.19 2.29
355 363 3.184379 ACGCAAGCGCTTATACATATGTG 59.816 43.478 24.55 17.29 44.19 3.21
356 364 3.184379 CGCAAGCGCTTATACATATGTGT 59.816 43.478 24.55 14.37 37.99 3.72
357 365 4.384547 CGCAAGCGCTTATACATATGTGTA 59.615 41.667 24.55 13.27 39.56 2.90
358 366 5.062183 CGCAAGCGCTTATACATATGTGTAT 59.938 40.000 24.55 17.81 43.74 2.29
359 367 6.252655 CGCAAGCGCTTATACATATGTGTATA 59.747 38.462 24.55 15.96 46.74 1.47
383 391 7.568199 ACACTTATCCTTATAAATGCACACC 57.432 36.000 0.00 0.00 29.76 4.16
384 392 6.546034 ACACTTATCCTTATAAATGCACACCC 59.454 38.462 0.00 0.00 29.76 4.61
385 393 5.763204 ACTTATCCTTATAAATGCACACCCG 59.237 40.000 0.00 0.00 0.00 5.28
386 394 2.294074 TCCTTATAAATGCACACCCGC 58.706 47.619 0.00 0.00 0.00 6.13
387 395 2.092646 TCCTTATAAATGCACACCCGCT 60.093 45.455 0.00 0.00 0.00 5.52
388 396 2.290641 CCTTATAAATGCACACCCGCTC 59.709 50.000 0.00 0.00 0.00 5.03
389 397 2.700722 TATAAATGCACACCCGCTCA 57.299 45.000 0.00 0.00 0.00 4.26
390 398 1.094785 ATAAATGCACACCCGCTCAC 58.905 50.000 0.00 0.00 0.00 3.51
391 399 0.250510 TAAATGCACACCCGCTCACA 60.251 50.000 0.00 0.00 0.00 3.58
392 400 1.795170 AAATGCACACCCGCTCACAC 61.795 55.000 0.00 0.00 0.00 3.82
393 401 2.680974 AATGCACACCCGCTCACACT 62.681 55.000 0.00 0.00 0.00 3.55
394 402 1.826340 ATGCACACCCGCTCACACTA 61.826 55.000 0.00 0.00 0.00 2.74
395 403 1.079127 GCACACCCGCTCACACTAT 60.079 57.895 0.00 0.00 0.00 2.12
396 404 1.084370 GCACACCCGCTCACACTATC 61.084 60.000 0.00 0.00 0.00 2.08
397 405 0.802222 CACACCCGCTCACACTATCG 60.802 60.000 0.00 0.00 0.00 2.92
398 406 1.878522 CACCCGCTCACACTATCGC 60.879 63.158 0.00 0.00 0.00 4.58
399 407 2.052690 ACCCGCTCACACTATCGCT 61.053 57.895 0.00 0.00 0.00 4.93
400 408 0.750546 ACCCGCTCACACTATCGCTA 60.751 55.000 0.00 0.00 0.00 4.26
401 409 0.598562 CCCGCTCACACTATCGCTAT 59.401 55.000 0.00 0.00 0.00 2.97
402 410 1.667177 CCCGCTCACACTATCGCTATG 60.667 57.143 0.00 0.00 0.00 2.23
403 411 1.266989 CCGCTCACACTATCGCTATGA 59.733 52.381 0.00 0.00 0.00 2.15
404 412 2.579541 CGCTCACACTATCGCTATGAG 58.420 52.381 0.00 0.00 39.84 2.90
406 414 3.632855 CTCACACTATCGCTATGAGCA 57.367 47.619 0.00 0.00 42.58 4.26
407 415 4.171663 CTCACACTATCGCTATGAGCAT 57.828 45.455 0.00 0.00 42.58 3.79
408 416 4.165036 CTCACACTATCGCTATGAGCATC 58.835 47.826 0.00 0.00 42.58 3.91
409 417 3.823304 TCACACTATCGCTATGAGCATCT 59.177 43.478 0.00 0.00 42.58 2.90
410 418 4.279420 TCACACTATCGCTATGAGCATCTT 59.721 41.667 0.00 0.00 42.58 2.40
411 419 4.620609 CACACTATCGCTATGAGCATCTTC 59.379 45.833 0.00 0.00 42.58 2.87
412 420 3.850837 CACTATCGCTATGAGCATCTTCG 59.149 47.826 0.00 0.00 42.58 3.79
413 421 3.753797 ACTATCGCTATGAGCATCTTCGA 59.246 43.478 0.00 0.00 42.58 3.71
414 422 3.650070 ATCGCTATGAGCATCTTCGAA 57.350 42.857 0.00 0.00 42.58 3.71
415 423 3.436700 TCGCTATGAGCATCTTCGAAA 57.563 42.857 0.00 0.00 42.58 3.46
416 424 3.375642 TCGCTATGAGCATCTTCGAAAG 58.624 45.455 0.00 0.00 42.58 2.62
417 425 3.066760 TCGCTATGAGCATCTTCGAAAGA 59.933 43.478 0.00 0.00 42.58 2.52
418 426 3.181377 CGCTATGAGCATCTTCGAAAGAC 59.819 47.826 0.00 0.00 42.58 3.01
419 427 4.367450 GCTATGAGCATCTTCGAAAGACT 58.633 43.478 0.00 0.00 41.89 3.24
420 428 4.208873 GCTATGAGCATCTTCGAAAGACTG 59.791 45.833 0.00 0.00 41.89 3.51
421 429 3.942130 TGAGCATCTTCGAAAGACTGA 57.058 42.857 0.00 0.00 41.01 3.41
422 430 3.842820 TGAGCATCTTCGAAAGACTGAG 58.157 45.455 0.00 0.00 41.01 3.35
423 431 3.256879 TGAGCATCTTCGAAAGACTGAGT 59.743 43.478 0.00 0.00 41.01 3.41
424 432 3.843999 AGCATCTTCGAAAGACTGAGTC 58.156 45.455 3.98 3.98 41.01 3.36
425 433 2.596419 GCATCTTCGAAAGACTGAGTCG 59.404 50.000 6.99 0.00 41.01 4.18
426 434 2.991434 TCTTCGAAAGACTGAGTCGG 57.009 50.000 6.99 0.00 41.84 4.79
427 435 1.068472 TCTTCGAAAGACTGAGTCGGC 60.068 52.381 6.99 0.00 41.84 5.54
428 436 0.671796 TTCGAAAGACTGAGTCGGCA 59.328 50.000 6.99 0.00 41.84 5.69
429 437 0.888619 TCGAAAGACTGAGTCGGCAT 59.111 50.000 6.99 0.00 37.67 4.40
430 438 2.089201 TCGAAAGACTGAGTCGGCATA 58.911 47.619 6.99 0.00 37.67 3.14
431 439 2.097629 TCGAAAGACTGAGTCGGCATAG 59.902 50.000 6.99 0.00 37.67 2.23
432 440 2.197577 GAAAGACTGAGTCGGCATAGC 58.802 52.381 6.99 0.00 37.67 2.97
433 441 1.186200 AAGACTGAGTCGGCATAGCA 58.814 50.000 6.99 0.00 37.67 3.49
434 442 1.407936 AGACTGAGTCGGCATAGCAT 58.592 50.000 6.99 0.00 37.67 3.79
435 443 1.339610 AGACTGAGTCGGCATAGCATC 59.660 52.381 6.99 0.00 37.67 3.91
436 444 1.339610 GACTGAGTCGGCATAGCATCT 59.660 52.381 0.00 0.00 0.00 2.90
437 445 1.759445 ACTGAGTCGGCATAGCATCTT 59.241 47.619 0.00 0.00 0.00 2.40
438 446 2.223923 ACTGAGTCGGCATAGCATCTTC 60.224 50.000 0.00 0.00 0.00 2.87
439 447 1.269257 TGAGTCGGCATAGCATCTTCG 60.269 52.381 0.00 0.00 0.00 3.79
440 448 1.001268 GAGTCGGCATAGCATCTTCGA 60.001 52.381 0.00 0.00 0.00 3.71
441 449 1.615883 AGTCGGCATAGCATCTTCGAT 59.384 47.619 0.00 0.00 0.00 3.59
442 450 1.723542 GTCGGCATAGCATCTTCGATG 59.276 52.381 0.00 0.00 0.00 3.84
443 451 1.073964 CGGCATAGCATCTTCGATGG 58.926 55.000 6.04 0.00 0.00 3.51
444 452 1.337167 CGGCATAGCATCTTCGATGGA 60.337 52.381 6.04 0.00 0.00 3.41
445 453 2.771089 GGCATAGCATCTTCGATGGAA 58.229 47.619 6.04 0.00 0.00 3.53
446 454 3.141398 GGCATAGCATCTTCGATGGAAA 58.859 45.455 6.04 0.00 0.00 3.13
447 455 3.058639 GGCATAGCATCTTCGATGGAAAC 60.059 47.826 6.04 0.00 0.00 2.78
461 469 3.423539 TGGAAACATCTCCTTCCACTG 57.576 47.619 0.00 0.00 44.87 3.66
462 470 2.978978 TGGAAACATCTCCTTCCACTGA 59.021 45.455 0.00 0.00 44.87 3.41
463 471 3.394274 TGGAAACATCTCCTTCCACTGAA 59.606 43.478 0.00 0.00 44.87 3.02
464 472 4.141274 TGGAAACATCTCCTTCCACTGAAA 60.141 41.667 0.00 0.00 44.87 2.69
465 473 4.827284 GGAAACATCTCCTTCCACTGAAAA 59.173 41.667 0.00 0.00 40.79 2.29
466 474 5.478332 GGAAACATCTCCTTCCACTGAAAAT 59.522 40.000 0.00 0.00 40.79 1.82
467 475 5.972107 AACATCTCCTTCCACTGAAAATG 57.028 39.130 0.00 0.00 0.00 2.32
468 476 3.760684 ACATCTCCTTCCACTGAAAATGC 59.239 43.478 0.00 0.00 0.00 3.56
469 477 3.507162 TCTCCTTCCACTGAAAATGCA 57.493 42.857 0.00 0.00 0.00 3.96
470 478 4.038271 TCTCCTTCCACTGAAAATGCAT 57.962 40.909 0.00 0.00 0.00 3.96
471 479 4.012374 TCTCCTTCCACTGAAAATGCATC 58.988 43.478 0.00 0.00 0.00 3.91
472 480 2.749076 TCCTTCCACTGAAAATGCATCG 59.251 45.455 0.00 0.00 0.00 3.84
473 481 2.523015 CTTCCACTGAAAATGCATCGC 58.477 47.619 0.00 0.00 0.00 4.58
474 482 0.810648 TCCACTGAAAATGCATCGCC 59.189 50.000 0.00 0.00 0.00 5.54
475 483 0.523968 CCACTGAAAATGCATCGCCG 60.524 55.000 0.00 0.00 0.00 6.46
476 484 0.523968 CACTGAAAATGCATCGCCGG 60.524 55.000 0.00 0.00 0.00 6.13
477 485 0.676466 ACTGAAAATGCATCGCCGGA 60.676 50.000 5.05 0.00 0.00 5.14
478 486 0.451383 CTGAAAATGCATCGCCGGAA 59.549 50.000 5.05 0.00 0.00 4.30
479 487 0.884514 TGAAAATGCATCGCCGGAAA 59.115 45.000 5.05 0.00 0.00 3.13
480 488 1.476085 TGAAAATGCATCGCCGGAAAT 59.524 42.857 5.05 0.00 0.00 2.17
481 489 2.094286 TGAAAATGCATCGCCGGAAATT 60.094 40.909 5.05 0.00 0.00 1.82
482 490 3.129462 TGAAAATGCATCGCCGGAAATTA 59.871 39.130 5.05 0.00 0.00 1.40
483 491 4.202101 TGAAAATGCATCGCCGGAAATTAT 60.202 37.500 5.05 0.00 0.00 1.28
484 492 5.009110 TGAAAATGCATCGCCGGAAATTATA 59.991 36.000 5.05 0.00 0.00 0.98
485 493 5.446143 AAATGCATCGCCGGAAATTATAA 57.554 34.783 5.05 0.00 0.00 0.98
486 494 5.446143 AATGCATCGCCGGAAATTATAAA 57.554 34.783 5.05 0.00 0.00 1.40
487 495 4.902443 TGCATCGCCGGAAATTATAAAA 57.098 36.364 5.05 0.00 0.00 1.52
488 496 5.446143 TGCATCGCCGGAAATTATAAAAT 57.554 34.783 5.05 0.00 0.00 1.82
489 497 6.561737 TGCATCGCCGGAAATTATAAAATA 57.438 33.333 5.05 0.00 0.00 1.40
490 498 6.971602 TGCATCGCCGGAAATTATAAAATAA 58.028 32.000 5.05 0.00 0.00 1.40
491 499 7.426410 TGCATCGCCGGAAATTATAAAATAAA 58.574 30.769 5.05 0.00 0.00 1.40
492 500 8.085296 TGCATCGCCGGAAATTATAAAATAAAT 58.915 29.630 5.05 0.00 0.00 1.40
493 501 8.921670 GCATCGCCGGAAATTATAAAATAAATT 58.078 29.630 5.05 0.00 0.00 1.82
496 504 9.672086 TCGCCGGAAATTATAAAATAAATTCAG 57.328 29.630 5.05 5.65 0.00 3.02
497 505 9.672086 CGCCGGAAATTATAAAATAAATTCAGA 57.328 29.630 5.05 0.00 0.00 3.27
508 516 6.966435 AAATAAATTCAGAAATTGCACGGG 57.034 33.333 0.00 0.00 35.27 5.28
509 517 3.317603 AAATTCAGAAATTGCACGGGG 57.682 42.857 0.00 0.00 35.27 5.73
510 518 2.214376 ATTCAGAAATTGCACGGGGA 57.786 45.000 0.00 0.00 0.00 4.81
511 519 1.243902 TTCAGAAATTGCACGGGGAC 58.756 50.000 0.00 0.00 0.00 4.46
512 520 0.400213 TCAGAAATTGCACGGGGACT 59.600 50.000 0.00 0.00 0.00 3.85
513 521 1.202879 TCAGAAATTGCACGGGGACTT 60.203 47.619 0.00 0.00 0.00 3.01
514 522 1.068333 CAGAAATTGCACGGGGACTTG 60.068 52.381 0.00 0.00 0.00 3.16
515 523 1.202879 AGAAATTGCACGGGGACTTGA 60.203 47.619 0.00 0.00 0.00 3.02
516 524 1.611491 GAAATTGCACGGGGACTTGAA 59.389 47.619 0.00 0.00 0.00 2.69
517 525 1.698506 AATTGCACGGGGACTTGAAA 58.301 45.000 0.00 0.00 30.68 2.69
518 526 1.698506 ATTGCACGGGGACTTGAAAA 58.301 45.000 0.00 0.00 29.78 2.29
519 527 1.698506 TTGCACGGGGACTTGAAAAT 58.301 45.000 0.00 0.00 0.00 1.82
520 528 0.958091 TGCACGGGGACTTGAAAATG 59.042 50.000 0.00 0.00 0.00 2.32
521 529 0.243636 GCACGGGGACTTGAAAATGG 59.756 55.000 0.00 0.00 0.00 3.16
522 530 1.616159 CACGGGGACTTGAAAATGGT 58.384 50.000 0.00 0.00 0.00 3.55
523 531 1.269448 CACGGGGACTTGAAAATGGTG 59.731 52.381 0.00 0.00 0.00 4.17
524 532 0.887933 CGGGGACTTGAAAATGGTGG 59.112 55.000 0.00 0.00 0.00 4.61
525 533 1.266178 GGGGACTTGAAAATGGTGGG 58.734 55.000 0.00 0.00 0.00 4.61
526 534 0.608130 GGGACTTGAAAATGGTGGGC 59.392 55.000 0.00 0.00 0.00 5.36
527 535 1.337118 GGACTTGAAAATGGTGGGCA 58.663 50.000 0.00 0.00 0.00 5.36
528 536 1.273327 GGACTTGAAAATGGTGGGCAG 59.727 52.381 0.00 0.00 0.00 4.85
529 537 2.238521 GACTTGAAAATGGTGGGCAGA 58.761 47.619 0.00 0.00 0.00 4.26
530 538 2.229784 GACTTGAAAATGGTGGGCAGAG 59.770 50.000 0.00 0.00 0.00 3.35
531 539 2.158475 ACTTGAAAATGGTGGGCAGAGA 60.158 45.455 0.00 0.00 0.00 3.10
532 540 2.905415 TGAAAATGGTGGGCAGAGAT 57.095 45.000 0.00 0.00 0.00 2.75
533 541 4.263905 ACTTGAAAATGGTGGGCAGAGATA 60.264 41.667 0.00 0.00 0.00 1.98
534 542 3.620488 TGAAAATGGTGGGCAGAGATAC 58.380 45.455 0.00 0.00 0.00 2.24
535 543 2.736670 AAATGGTGGGCAGAGATACC 57.263 50.000 0.00 0.00 0.00 2.73
536 544 1.595311 AATGGTGGGCAGAGATACCA 58.405 50.000 0.00 0.00 46.25 3.25
540 548 3.399234 TGGGCAGAGATACCACTGT 57.601 52.632 0.00 0.00 36.62 3.55
541 549 0.904649 TGGGCAGAGATACCACTGTG 59.095 55.000 0.00 0.00 36.62 3.66
542 550 0.905357 GGGCAGAGATACCACTGTGT 59.095 55.000 7.08 0.00 36.62 3.72
543 551 2.108168 GGGCAGAGATACCACTGTGTA 58.892 52.381 7.08 0.22 36.62 2.90
544 552 2.101582 GGGCAGAGATACCACTGTGTAG 59.898 54.545 7.08 0.00 36.62 2.74
545 553 2.101582 GGCAGAGATACCACTGTGTAGG 59.898 54.545 7.08 0.00 36.62 3.18
546 554 2.761208 GCAGAGATACCACTGTGTAGGT 59.239 50.000 7.08 0.12 41.89 3.08
547 555 3.181485 GCAGAGATACCACTGTGTAGGTC 60.181 52.174 7.08 0.00 39.31 3.85
548 556 3.065510 CAGAGATACCACTGTGTAGGTCG 59.934 52.174 7.08 0.00 39.31 4.79
549 557 3.054582 AGAGATACCACTGTGTAGGTCGA 60.055 47.826 7.08 0.00 39.31 4.20
550 558 3.884091 GAGATACCACTGTGTAGGTCGAT 59.116 47.826 7.08 0.00 39.31 3.59
551 559 4.279145 AGATACCACTGTGTAGGTCGATT 58.721 43.478 7.08 0.00 39.31 3.34
552 560 4.338682 AGATACCACTGTGTAGGTCGATTC 59.661 45.833 7.08 0.00 39.31 2.52
553 561 1.201647 ACCACTGTGTAGGTCGATTCG 59.798 52.381 7.08 0.00 30.79 3.34
554 562 1.269166 CACTGTGTAGGTCGATTCGC 58.731 55.000 0.00 0.00 0.00 4.70
570 578 1.805945 CGCTGTGCTCTTACCCGTC 60.806 63.158 0.00 0.00 0.00 4.79
701 712 4.796495 GCCGCCGAAACCATCCCT 62.796 66.667 0.00 0.00 0.00 4.20
907 921 2.359967 GCCGAACCACCTAGCCTCT 61.360 63.158 0.00 0.00 0.00 3.69
1092 1115 0.524862 TCGCGACCTACAACTTCCTC 59.475 55.000 3.71 0.00 0.00 3.71
1144 1167 2.254951 CACGCAAATTGCTCGGCA 59.745 55.556 16.42 0.00 42.25 5.69
1284 1307 3.449018 ACTACTGGTACAAGCAGATGAGG 59.551 47.826 12.68 1.61 45.98 3.86
1332 1355 1.519455 CACGCGGATCCTTCACTCC 60.519 63.158 12.47 0.00 0.00 3.85
1501 1528 5.104485 GGGTTACATTGTCCTCAATAGACCT 60.104 44.000 0.00 0.00 41.66 3.85
1525 1552 2.492012 GCATTTGTCCAATGGTTGCAA 58.508 42.857 0.00 0.00 42.51 4.08
1562 1589 6.181206 AGGAGGAGTAAGCATATTTCCTTC 57.819 41.667 6.48 5.07 38.35 3.46
1580 1607 6.436843 TCCTTCTGTTCTTTGTTTGTCTTC 57.563 37.500 0.00 0.00 0.00 2.87
1587 1614 5.475220 TGTTCTTTGTTTGTCTTCACTGGAA 59.525 36.000 0.00 0.00 0.00 3.53
1687 1714 2.232208 GCCTTTGCCAAACTTAGCTCAT 59.768 45.455 0.00 0.00 0.00 2.90
1881 1908 8.431910 AGTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
1904 1931 4.686554 AGACGTTTAGACAATTCAGACAGC 59.313 41.667 0.00 0.00 0.00 4.40
1905 1932 4.377021 ACGTTTAGACAATTCAGACAGCA 58.623 39.130 0.00 0.00 0.00 4.41
1932 1959 2.498167 ACAGTTCAATGTCAGCTGTCC 58.502 47.619 14.67 6.40 35.78 4.02
1947 1975 5.637810 TCAGCTGTCCAAACGTCTTATAAAG 59.362 40.000 14.67 0.00 0.00 1.85
1954 1982 7.095940 TGTCCAAACGTCTTATAAAGAAGAACG 60.096 37.037 9.14 3.95 39.01 3.95
1955 1983 7.115378 GTCCAAACGTCTTATAAAGAAGAACGA 59.885 37.037 9.14 0.00 39.01 3.85
2241 2471 2.862541 TGGGTCTTGGAAATGTCAGTG 58.137 47.619 0.00 0.00 0.00 3.66
2418 2649 8.845413 AGAATTCTGCCACTTGATAGATTATC 57.155 34.615 7.30 0.00 35.74 1.75
2490 2721 4.100084 CAGCCTCCATGGGACGCA 62.100 66.667 13.02 0.00 36.46 5.24
3225 3465 4.660938 GGGTGTGGGGCTGGTGAC 62.661 72.222 0.00 0.00 0.00 3.67
3458 3702 2.759795 GTGGCAAGCTCCTCCCTT 59.240 61.111 0.00 0.00 0.00 3.95
3491 3735 3.574354 AGATGGCAAAGATCCCTCTTC 57.426 47.619 0.00 0.00 40.93 2.87
3592 3836 1.143305 CGCAACTGTCAGGACTTCAG 58.857 55.000 4.53 0.00 35.60 3.02
4003 4573 2.429610 GCAACATCAGGGAAAGATGCAT 59.570 45.455 0.00 0.00 45.19 3.96
4077 4647 7.040201 TGGACAGAGGAAAATGAAAAAGATCTG 60.040 37.037 0.00 0.00 38.06 2.90
4097 4667 3.153919 TGAAAGGGTATTGGACAGCAAC 58.846 45.455 0.00 0.00 0.00 4.17
4437 5008 5.362430 TGATAATACCAAGAAACCCATTGCC 59.638 40.000 0.00 0.00 0.00 4.52
4551 5122 5.850557 TCAACAATGTCTTTGACACCATT 57.149 34.783 2.31 0.00 45.65 3.16
4576 5147 0.449388 CGTCTGAGGTACCCGTGTAC 59.551 60.000 8.74 0.00 45.46 2.90
4585 5156 0.686224 TACCCGTGTACAAGGTTGGG 59.314 55.000 23.77 18.32 42.50 4.12
4724 5295 2.541466 CAAGAGGGAGTCCAAGGTAGT 58.459 52.381 12.30 0.00 34.83 2.73
4936 5511 3.776340 TCGTCAGCGTATTGAGCAATTA 58.224 40.909 0.52 0.00 39.49 1.40
5091 5668 2.035449 TCTGTACACAAGTTCCTGGTCG 59.965 50.000 0.00 0.00 0.00 4.79
5164 5741 2.092211 GCGACTGTCCTACATTTTGACG 59.908 50.000 1.55 0.00 0.00 4.35
5264 5841 2.093288 GCTGGACACATCATCTTCTCCA 60.093 50.000 0.00 0.00 0.00 3.86
5265 5842 3.620719 GCTGGACACATCATCTTCTCCAA 60.621 47.826 0.00 0.00 0.00 3.53
5337 5914 4.640771 AAGTTTTACTCCATGAGGCAGA 57.359 40.909 0.00 0.00 33.35 4.26
5447 6024 2.750350 GGGCACTAGCACCTGTGT 59.250 61.111 0.00 0.00 44.61 3.72
5503 6080 2.472695 TATTCAAGCACAGAAGCCGT 57.527 45.000 0.00 0.00 34.23 5.68
5587 6200 7.955918 AGTTTCTTCCAATGAAGCATAAGTTT 58.044 30.769 0.00 0.00 46.28 2.66
5635 6248 5.104610 AGCTTTGTGGATATCAGTCTCATGT 60.105 40.000 4.83 0.00 0.00 3.21
5650 6263 7.446319 TCAGTCTCATGTCATTGTTTTCAAGAT 59.554 33.333 0.00 0.00 43.41 2.40
5709 6322 2.559668 ACTTCAACATGAACCTGGCATG 59.440 45.455 11.36 11.36 46.49 4.06
5758 6374 1.810151 GCGTCCTTATGCAAGTTTCCA 59.190 47.619 0.00 0.00 37.58 3.53
5873 6491 3.766591 TGGCCGTGTCAATGGATTATTTT 59.233 39.130 0.00 0.00 33.87 1.82
5966 6588 0.244450 TCCAACTAGGGTGTTACGCG 59.756 55.000 3.53 3.53 38.24 6.01
6015 6637 6.208204 GGATCTGCTGCTATTGTTAATGGAAT 59.792 38.462 0.00 0.00 0.00 3.01
6016 6638 7.255730 GGATCTGCTGCTATTGTTAATGGAATT 60.256 37.037 0.00 0.00 41.28 2.17
6017 6639 7.031226 TCTGCTGCTATTGTTAATGGAATTC 57.969 36.000 0.00 0.00 37.87 2.17
6018 6640 5.820131 TGCTGCTATTGTTAATGGAATTCG 58.180 37.500 0.00 0.00 37.87 3.34
6130 6754 5.589855 TCTTCTTCTTTCAGTTTGACATGCA 59.410 36.000 0.00 0.00 0.00 3.96
6178 6802 8.288208 TCCGTTACAATTTAAATTAGCGTTTCA 58.712 29.630 12.98 0.00 0.00 2.69
6526 7153 5.643777 TGTAAAGCAGAAACATAAGCTCTCC 59.356 40.000 0.00 0.00 36.07 3.71
6558 7185 2.976185 TCCTGGTCCATTCAGTTGTACA 59.024 45.455 0.00 0.00 0.00 2.90
6566 7193 3.974401 CCATTCAGTTGTACAACAAAGCG 59.026 43.478 33.93 21.98 40.15 4.68
6642 7275 4.469657 ACAGCCTGGAACAAATTCTTGTA 58.530 39.130 0.00 0.00 45.25 2.41
6723 7356 2.076863 CCCACGTCATGTTCTCCTTTC 58.923 52.381 0.00 0.00 0.00 2.62
6812 7446 1.520787 CACCGGGCCACTCGTAATC 60.521 63.158 6.32 0.00 0.00 1.75
6947 7581 7.215789 TGCAGTAATTTGATTTGTTGGATTGT 58.784 30.769 0.00 0.00 0.00 2.71
6948 7582 8.363390 TGCAGTAATTTGATTTGTTGGATTGTA 58.637 29.630 0.00 0.00 0.00 2.41
6949 7583 8.647226 GCAGTAATTTGATTTGTTGGATTGTAC 58.353 33.333 0.00 0.00 0.00 2.90
6962 7596 8.862325 TGTTGGATTGTACTATCACAGAAAAT 57.138 30.769 17.26 0.00 0.00 1.82
7030 7664 2.222027 AGTGCAGTGTAAAGGAGTTGC 58.778 47.619 0.00 0.00 0.00 4.17
7031 7665 1.946768 GTGCAGTGTAAAGGAGTTGCA 59.053 47.619 0.00 0.00 39.03 4.08
7032 7666 2.357637 GTGCAGTGTAAAGGAGTTGCAA 59.642 45.455 0.00 0.00 42.41 4.08
7033 7667 3.020274 TGCAGTGTAAAGGAGTTGCAAA 58.980 40.909 0.00 0.00 38.47 3.68
7034 7668 3.066621 TGCAGTGTAAAGGAGTTGCAAAG 59.933 43.478 0.00 0.00 38.47 2.77
7035 7669 3.550842 GCAGTGTAAAGGAGTTGCAAAGG 60.551 47.826 0.00 0.00 33.24 3.11
7036 7670 3.882888 CAGTGTAAAGGAGTTGCAAAGGA 59.117 43.478 0.00 0.00 33.24 3.36
7037 7671 3.883489 AGTGTAAAGGAGTTGCAAAGGAC 59.117 43.478 0.00 0.00 33.24 3.85
7038 7672 3.630312 GTGTAAAGGAGTTGCAAAGGACA 59.370 43.478 0.00 0.00 33.24 4.02
7039 7673 3.630312 TGTAAAGGAGTTGCAAAGGACAC 59.370 43.478 0.00 0.00 0.00 3.67
7040 7674 2.435372 AAGGAGTTGCAAAGGACACA 57.565 45.000 0.00 0.00 0.00 3.72
7041 7675 2.664402 AGGAGTTGCAAAGGACACAT 57.336 45.000 0.00 0.00 0.00 3.21
7042 7676 2.233271 AGGAGTTGCAAAGGACACATG 58.767 47.619 0.00 0.00 0.00 3.21
7043 7677 1.336240 GGAGTTGCAAAGGACACATGC 60.336 52.381 0.00 0.00 40.45 4.06
7057 7691 2.100846 CATGCAATGGTGGGACTCG 58.899 57.895 0.00 0.00 41.79 4.18
7058 7692 1.077501 ATGCAATGGTGGGACTCGG 60.078 57.895 0.00 0.00 0.00 4.63
7059 7693 3.134127 GCAATGGTGGGACTCGGC 61.134 66.667 0.00 0.00 0.00 5.54
7060 7694 2.350895 CAATGGTGGGACTCGGCA 59.649 61.111 0.00 0.00 0.00 5.69
7061 7695 1.746615 CAATGGTGGGACTCGGCAG 60.747 63.158 0.00 0.00 0.00 4.85
7062 7696 2.971598 AATGGTGGGACTCGGCAGG 61.972 63.158 0.00 0.00 0.00 4.85
7063 7697 4.954118 TGGTGGGACTCGGCAGGT 62.954 66.667 0.00 0.00 0.00 4.00
7064 7698 4.394712 GGTGGGACTCGGCAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
7065 7699 4.394712 GTGGGACTCGGCAGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
7066 7700 4.631740 TGGGACTCGGCAGGTGGA 62.632 66.667 0.00 0.00 0.00 4.02
7067 7701 3.083997 GGGACTCGGCAGGTGGAT 61.084 66.667 0.00 0.00 0.00 3.41
7068 7702 2.501610 GGACTCGGCAGGTGGATC 59.498 66.667 0.00 0.00 0.00 3.36
7069 7703 2.501610 GACTCGGCAGGTGGATCC 59.498 66.667 4.20 4.20 0.00 3.36
7071 7705 0.755698 GACTCGGCAGGTGGATCCTA 60.756 60.000 14.23 0.00 46.24 2.94
7072 7706 0.105453 ACTCGGCAGGTGGATCCTAT 60.105 55.000 14.23 0.00 46.24 2.57
7073 7707 1.051812 CTCGGCAGGTGGATCCTATT 58.948 55.000 14.23 0.00 46.24 1.73
7074 7708 1.417890 CTCGGCAGGTGGATCCTATTT 59.582 52.381 14.23 0.00 46.24 1.40
7075 7709 1.140852 TCGGCAGGTGGATCCTATTTG 59.859 52.381 14.23 7.45 46.24 2.32
7076 7710 1.140852 CGGCAGGTGGATCCTATTTGA 59.859 52.381 14.23 0.00 46.24 2.69
7077 7711 2.576615 GGCAGGTGGATCCTATTTGAC 58.423 52.381 14.23 4.81 46.24 3.18
7078 7712 2.213499 GCAGGTGGATCCTATTTGACG 58.787 52.381 14.23 0.00 46.24 4.35
7079 7713 2.213499 CAGGTGGATCCTATTTGACGC 58.787 52.381 14.23 0.00 46.24 5.19
7080 7714 1.141053 AGGTGGATCCTATTTGACGCC 59.859 52.381 14.23 0.00 46.10 5.68
7081 7715 1.594331 GTGGATCCTATTTGACGCCC 58.406 55.000 14.23 0.00 0.00 6.13
7082 7716 0.105964 TGGATCCTATTTGACGCCCG 59.894 55.000 14.23 0.00 0.00 6.13
7083 7717 1.228657 GGATCCTATTTGACGCCCGC 61.229 60.000 3.84 0.00 0.00 6.13
7084 7718 1.557443 GATCCTATTTGACGCCCGCG 61.557 60.000 7.69 7.69 46.03 6.46
7085 7719 2.023414 ATCCTATTTGACGCCCGCGA 62.023 55.000 17.16 0.00 42.83 5.87
7086 7720 2.237751 CCTATTTGACGCCCGCGAG 61.238 63.158 17.16 0.00 42.83 5.03
7087 7721 1.518572 CTATTTGACGCCCGCGAGT 60.519 57.895 17.16 4.26 42.83 4.18
7088 7722 1.752501 CTATTTGACGCCCGCGAGTG 61.753 60.000 17.16 2.46 42.83 3.51
7089 7723 2.495366 TATTTGACGCCCGCGAGTGT 62.495 55.000 17.16 6.50 42.83 3.55
7096 7730 4.135153 CCCGCGAGTGTCCAGGAG 62.135 72.222 8.23 0.00 0.00 3.69
7097 7731 3.062466 CCGCGAGTGTCCAGGAGA 61.062 66.667 8.23 0.00 0.00 3.71
7098 7732 2.636412 CCGCGAGTGTCCAGGAGAA 61.636 63.158 8.23 0.00 0.00 2.87
7099 7733 1.153939 CGCGAGTGTCCAGGAGAAG 60.154 63.158 0.00 0.00 0.00 2.85
7100 7734 1.867919 CGCGAGTGTCCAGGAGAAGT 61.868 60.000 0.00 0.00 0.00 3.01
7101 7735 0.389166 GCGAGTGTCCAGGAGAAGTG 60.389 60.000 0.00 0.00 0.00 3.16
7102 7736 0.244994 CGAGTGTCCAGGAGAAGTGG 59.755 60.000 0.00 0.00 36.28 4.00
7103 7737 0.036858 GAGTGTCCAGGAGAAGTGGC 60.037 60.000 0.00 0.00 34.77 5.01
7104 7738 0.472734 AGTGTCCAGGAGAAGTGGCT 60.473 55.000 0.00 0.00 34.77 4.75
7105 7739 0.398318 GTGTCCAGGAGAAGTGGCTT 59.602 55.000 0.00 0.00 34.77 4.35
7106 7740 0.687354 TGTCCAGGAGAAGTGGCTTC 59.313 55.000 0.00 0.96 40.45 3.86
7107 7741 0.390472 GTCCAGGAGAAGTGGCTTCG 60.390 60.000 0.00 0.00 44.34 3.79
7108 7742 1.743252 CCAGGAGAAGTGGCTTCGC 60.743 63.158 4.43 4.43 44.34 4.70
7109 7743 1.294780 CAGGAGAAGTGGCTTCGCT 59.705 57.895 11.22 0.00 44.34 4.93
7110 7744 1.018226 CAGGAGAAGTGGCTTCGCTG 61.018 60.000 11.22 5.57 44.34 5.18
7111 7745 1.188219 AGGAGAAGTGGCTTCGCTGA 61.188 55.000 11.22 0.00 44.34 4.26
7112 7746 0.320771 GGAGAAGTGGCTTCGCTGAA 60.321 55.000 11.22 0.00 44.34 3.02
7113 7747 1.074752 GAGAAGTGGCTTCGCTGAAG 58.925 55.000 12.17 12.17 44.34 3.02
7158 7792 2.188469 GGCCCACCTCGCGAATTA 59.812 61.111 11.33 0.00 0.00 1.40
7159 7793 1.450669 GGCCCACCTCGCGAATTAA 60.451 57.895 11.33 0.00 0.00 1.40
7160 7794 1.027792 GGCCCACCTCGCGAATTAAA 61.028 55.000 11.33 0.00 0.00 1.52
7161 7795 0.377203 GCCCACCTCGCGAATTAAAG 59.623 55.000 11.33 0.00 0.00 1.85
7162 7796 0.377203 CCCACCTCGCGAATTAAAGC 59.623 55.000 11.33 0.00 0.00 3.51
7169 7803 3.393112 GCGAATTAAAGCGTTGCCA 57.607 47.368 0.00 0.00 0.00 4.92
7170 7804 1.259316 GCGAATTAAAGCGTTGCCAG 58.741 50.000 0.00 0.00 0.00 4.85
7171 7805 1.895051 CGAATTAAAGCGTTGCCAGG 58.105 50.000 0.00 0.00 0.00 4.45
7172 7806 1.629013 GAATTAAAGCGTTGCCAGGC 58.371 50.000 3.66 3.66 0.00 4.85
7173 7807 0.965439 AATTAAAGCGTTGCCAGGCA 59.035 45.000 11.22 11.22 36.16 4.75
7174 7808 0.965439 ATTAAAGCGTTGCCAGGCAA 59.035 45.000 23.88 23.88 46.80 4.52
7181 7815 2.443016 TTGCCAGGCAAACCGGTT 60.443 55.556 25.43 15.86 45.96 4.44
7182 7816 2.494530 TTGCCAGGCAAACCGGTTC 61.495 57.895 25.43 9.09 45.96 3.62
7183 7817 2.597510 GCCAGGCAAACCGGTTCT 60.598 61.111 22.53 11.02 42.76 3.01
7184 7818 2.919494 GCCAGGCAAACCGGTTCTG 61.919 63.158 22.53 22.07 42.76 3.02
7185 7819 2.268076 CCAGGCAAACCGGTTCTGG 61.268 63.158 29.11 29.11 42.76 3.86
7186 7820 2.115266 AGGCAAACCGGTTCTGGG 59.885 61.111 22.53 11.79 42.76 4.45
7187 7821 2.114411 GGCAAACCGGTTCTGGGA 59.886 61.111 22.53 0.00 0.00 4.37
7188 7822 1.529713 GGCAAACCGGTTCTGGGAA 60.530 57.895 22.53 0.00 0.00 3.97
7189 7823 1.658114 GCAAACCGGTTCTGGGAAC 59.342 57.895 22.53 4.95 0.00 3.62
7240 7874 6.887626 TTTTATACTCTTTGCCGGTTTTCT 57.112 33.333 1.90 0.00 0.00 2.52
7241 7875 5.873179 TTATACTCTTTGCCGGTTTTCTG 57.127 39.130 1.90 0.00 0.00 3.02
7242 7876 2.341846 ACTCTTTGCCGGTTTTCTGA 57.658 45.000 1.90 0.00 0.00 3.27
7243 7877 2.863809 ACTCTTTGCCGGTTTTCTGAT 58.136 42.857 1.90 0.00 0.00 2.90
7244 7878 3.222603 ACTCTTTGCCGGTTTTCTGATT 58.777 40.909 1.90 0.00 0.00 2.57
7245 7879 3.636764 ACTCTTTGCCGGTTTTCTGATTT 59.363 39.130 1.90 0.00 0.00 2.17
7246 7880 4.099419 ACTCTTTGCCGGTTTTCTGATTTT 59.901 37.500 1.90 0.00 0.00 1.82
7247 7881 5.017294 TCTTTGCCGGTTTTCTGATTTTT 57.983 34.783 1.90 0.00 0.00 1.94
7248 7882 5.047188 TCTTTGCCGGTTTTCTGATTTTTC 58.953 37.500 1.90 0.00 0.00 2.29
7249 7883 4.392921 TTGCCGGTTTTCTGATTTTTCA 57.607 36.364 1.90 0.00 0.00 2.69
7250 7884 4.599047 TGCCGGTTTTCTGATTTTTCAT 57.401 36.364 1.90 0.00 0.00 2.57
7251 7885 4.305769 TGCCGGTTTTCTGATTTTTCATG 58.694 39.130 1.90 0.00 0.00 3.07
7252 7886 4.202202 TGCCGGTTTTCTGATTTTTCATGT 60.202 37.500 1.90 0.00 0.00 3.21
7253 7887 5.010112 TGCCGGTTTTCTGATTTTTCATGTA 59.990 36.000 1.90 0.00 0.00 2.29
7254 7888 6.099341 GCCGGTTTTCTGATTTTTCATGTAT 58.901 36.000 1.90 0.00 0.00 2.29
7255 7889 6.253512 GCCGGTTTTCTGATTTTTCATGTATC 59.746 38.462 1.90 0.00 0.00 2.24
7256 7890 7.538575 CCGGTTTTCTGATTTTTCATGTATCT 58.461 34.615 0.00 0.00 0.00 1.98
7257 7891 8.028938 CCGGTTTTCTGATTTTTCATGTATCTT 58.971 33.333 0.00 0.00 0.00 2.40
7258 7892 9.410556 CGGTTTTCTGATTTTTCATGTATCTTT 57.589 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.145819 GAGGTGGATGAGCAGAGGC 59.854 63.158 0.00 0.00 41.61 4.70
4 5 1.440893 CGAGGTGGATGAGCAGAGG 59.559 63.158 0.00 0.00 0.00 3.69
5 6 1.326213 ACCGAGGTGGATGAGCAGAG 61.326 60.000 0.00 0.00 42.00 3.35
6 7 1.305297 ACCGAGGTGGATGAGCAGA 60.305 57.895 0.00 0.00 42.00 4.26
7 8 1.153489 CACCGAGGTGGATGAGCAG 60.153 63.158 14.19 0.00 42.00 4.24
8 9 1.607801 CTCACCGAGGTGGATGAGCA 61.608 60.000 20.79 0.36 45.43 4.26
9 10 1.142748 CTCACCGAGGTGGATGAGC 59.857 63.158 20.79 0.00 45.43 4.26
10 11 1.142748 GCTCACCGAGGTGGATGAG 59.857 63.158 20.79 12.30 45.43 2.90
11 12 2.359169 GGCTCACCGAGGTGGATGA 61.359 63.158 20.79 2.11 45.43 2.92
12 13 2.187946 GGCTCACCGAGGTGGATG 59.812 66.667 20.79 12.73 45.43 3.51
13 14 2.039624 AGGCTCACCGAGGTGGAT 59.960 61.111 20.79 3.51 45.43 3.41
14 15 2.680352 GAGGCTCACCGAGGTGGA 60.680 66.667 20.79 8.05 45.43 4.02
15 16 3.775654 GGAGGCTCACCGAGGTGG 61.776 72.222 20.79 12.98 45.43 4.61
16 17 2.997315 TGGAGGCTCACCGAGGTG 60.997 66.667 17.69 15.74 46.64 4.00
17 18 2.997897 GTGGAGGCTCACCGAGGT 60.998 66.667 17.69 0.00 42.76 3.85
18 19 3.775654 GGTGGAGGCTCACCGAGG 61.776 72.222 17.69 0.00 46.31 4.63
23 24 4.767255 CCGCTGGTGGAGGCTCAC 62.767 72.222 17.69 12.11 36.95 3.51
50 51 4.812476 TCATCGTCAAGGGCGCGG 62.812 66.667 8.83 0.00 0.00 6.46
51 52 2.586079 ATCATCGTCAAGGGCGCG 60.586 61.111 0.00 0.00 0.00 6.86
52 53 3.017323 CATCATCGTCAAGGGCGC 58.983 61.111 0.00 0.00 0.00 6.53
53 54 1.769098 CTGCATCATCGTCAAGGGCG 61.769 60.000 0.00 0.00 0.00 6.13
58 59 5.048852 TCAAATTTGACTGCATCATCGTCAA 60.049 36.000 16.91 12.86 43.56 3.18
65 66 5.921976 GTCAACATCAAATTTGACTGCATCA 59.078 36.000 22.71 0.00 45.45 3.07
82 83 5.415701 GTGGACTTGTAATGATGGTCAACAT 59.584 40.000 0.00 0.00 44.18 2.71
121 122 2.029828 TGTCACTTCTCCTCTTCGCTTC 60.030 50.000 0.00 0.00 0.00 3.86
140 141 3.091545 TCTAACGACCCTTCCGTATTGT 58.908 45.455 0.00 0.00 39.57 2.71
146 147 1.141234 GCCTCTAACGACCCTTCCG 59.859 63.158 0.00 0.00 0.00 4.30
150 151 3.003113 GCACGCCTCTAACGACCCT 62.003 63.158 0.00 0.00 0.00 4.34
180 181 2.826738 GTGTGTTGCACCGGGTGT 60.827 61.111 26.86 0.00 42.10 4.16
187 188 3.498082 AGAAAAAGTTCGTGTGTTGCAC 58.502 40.909 0.00 0.00 44.36 4.57
247 251 8.090214 AGAATGTTCCATGGTATTGAAAAGTTG 58.910 33.333 12.58 0.00 0.00 3.16
249 253 7.781324 AGAATGTTCCATGGTATTGAAAAGT 57.219 32.000 12.58 0.00 0.00 2.66
251 255 8.912988 GGATAGAATGTTCCATGGTATTGAAAA 58.087 33.333 12.58 0.00 31.99 2.29
252 256 8.058235 TGGATAGAATGTTCCATGGTATTGAAA 58.942 33.333 12.58 0.00 37.10 2.69
253 257 7.581814 TGGATAGAATGTTCCATGGTATTGAA 58.418 34.615 12.58 0.00 37.10 2.69
279 287 9.407380 AGCACATGTATAACCATAAAAATCAGA 57.593 29.630 0.00 0.00 0.00 3.27
288 296 7.070696 ACAGGTAAGAGCACATGTATAACCATA 59.929 37.037 0.00 0.00 41.31 2.74
290 298 5.188948 ACAGGTAAGAGCACATGTATAACCA 59.811 40.000 0.00 0.00 41.31 3.67
293 301 8.630054 AAAAACAGGTAAGAGCACATGTATAA 57.370 30.769 0.00 0.00 42.19 0.98
316 324 5.728344 GCTTGCGTCTGTACTGTGTTTAAAA 60.728 40.000 0.00 0.00 0.00 1.52
317 325 4.260456 GCTTGCGTCTGTACTGTGTTTAAA 60.260 41.667 0.00 0.00 0.00 1.52
318 326 3.246699 GCTTGCGTCTGTACTGTGTTTAA 59.753 43.478 0.00 0.00 0.00 1.52
319 327 2.798283 GCTTGCGTCTGTACTGTGTTTA 59.202 45.455 0.00 0.00 0.00 2.01
321 329 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
322 330 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
323 331 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
324 332 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
325 333 1.284982 AAGCGCTTGCGTCTGTACTG 61.285 55.000 24.40 0.00 45.69 2.74
326 334 0.242825 TAAGCGCTTGCGTCTGTACT 59.757 50.000 32.23 3.76 45.69 2.73
327 335 1.278238 ATAAGCGCTTGCGTCTGTAC 58.722 50.000 32.23 0.00 45.69 2.90
328 336 2.159352 TGTATAAGCGCTTGCGTCTGTA 60.159 45.455 32.23 10.34 45.69 2.74
329 337 1.278238 GTATAAGCGCTTGCGTCTGT 58.722 50.000 32.23 6.01 45.69 3.41
330 338 1.277326 TGTATAAGCGCTTGCGTCTG 58.723 50.000 32.23 0.00 45.69 3.51
331 339 2.225068 ATGTATAAGCGCTTGCGTCT 57.775 45.000 32.23 11.40 45.69 4.18
332 340 3.428870 ACATATGTATAAGCGCTTGCGTC 59.571 43.478 32.23 18.59 45.69 5.19
333 341 3.184379 CACATATGTATAAGCGCTTGCGT 59.816 43.478 32.23 22.67 45.69 5.24
334 342 3.184379 ACACATATGTATAAGCGCTTGCG 59.816 43.478 32.23 10.31 39.88 4.85
335 343 4.732285 ACACATATGTATAAGCGCTTGC 57.268 40.909 32.23 20.90 37.26 4.01
357 365 9.284968 GGTGTGCATTTATAAGGATAAGTGTAT 57.715 33.333 0.00 0.00 37.49 2.29
358 366 7.717875 GGGTGTGCATTTATAAGGATAAGTGTA 59.282 37.037 0.00 0.00 37.49 2.90
359 367 6.546034 GGGTGTGCATTTATAAGGATAAGTGT 59.454 38.462 0.00 0.00 37.49 3.55
360 368 6.293407 CGGGTGTGCATTTATAAGGATAAGTG 60.293 42.308 0.00 0.00 37.96 3.16
361 369 5.763204 CGGGTGTGCATTTATAAGGATAAGT 59.237 40.000 0.00 0.00 0.00 2.24
362 370 5.334879 GCGGGTGTGCATTTATAAGGATAAG 60.335 44.000 0.00 0.00 34.15 1.73
363 371 4.517453 GCGGGTGTGCATTTATAAGGATAA 59.483 41.667 0.00 0.00 34.15 1.75
364 372 4.069304 GCGGGTGTGCATTTATAAGGATA 58.931 43.478 0.00 0.00 34.15 2.59
365 373 2.884639 GCGGGTGTGCATTTATAAGGAT 59.115 45.455 0.00 0.00 34.15 3.24
366 374 2.092646 AGCGGGTGTGCATTTATAAGGA 60.093 45.455 0.00 0.00 37.31 3.36
367 375 2.290641 GAGCGGGTGTGCATTTATAAGG 59.709 50.000 0.00 0.00 37.31 2.69
368 376 2.942376 TGAGCGGGTGTGCATTTATAAG 59.058 45.455 0.00 0.00 37.31 1.73
369 377 2.680841 GTGAGCGGGTGTGCATTTATAA 59.319 45.455 0.00 0.00 37.31 0.98
370 378 2.285083 GTGAGCGGGTGTGCATTTATA 58.715 47.619 0.00 0.00 37.31 0.98
371 379 1.094785 GTGAGCGGGTGTGCATTTAT 58.905 50.000 0.00 0.00 37.31 1.40
372 380 0.250510 TGTGAGCGGGTGTGCATTTA 60.251 50.000 0.00 0.00 37.31 1.40
373 381 1.528076 TGTGAGCGGGTGTGCATTT 60.528 52.632 0.00 0.00 37.31 2.32
374 382 2.112928 TGTGAGCGGGTGTGCATT 59.887 55.556 0.00 0.00 37.31 3.56
375 383 1.826340 TAGTGTGAGCGGGTGTGCAT 61.826 55.000 0.00 0.00 37.31 3.96
376 384 1.826340 ATAGTGTGAGCGGGTGTGCA 61.826 55.000 0.00 0.00 37.31 4.57
377 385 1.079127 ATAGTGTGAGCGGGTGTGC 60.079 57.895 0.00 0.00 0.00 4.57
378 386 0.802222 CGATAGTGTGAGCGGGTGTG 60.802 60.000 0.00 0.00 0.00 3.82
379 387 1.511305 CGATAGTGTGAGCGGGTGT 59.489 57.895 0.00 0.00 0.00 4.16
380 388 1.878522 GCGATAGTGTGAGCGGGTG 60.879 63.158 0.00 0.00 39.35 4.61
381 389 0.750546 TAGCGATAGTGTGAGCGGGT 60.751 55.000 0.00 0.00 39.35 5.28
382 390 0.598562 ATAGCGATAGTGTGAGCGGG 59.401 55.000 0.00 0.00 39.35 6.13
383 391 1.266989 TCATAGCGATAGTGTGAGCGG 59.733 52.381 0.00 0.00 39.35 5.52
384 392 2.579541 CTCATAGCGATAGTGTGAGCG 58.420 52.381 0.00 0.00 32.37 5.03
385 393 2.323959 GCTCATAGCGATAGTGTGAGC 58.676 52.381 16.33 16.33 45.50 4.26
386 394 3.632855 TGCTCATAGCGATAGTGTGAG 57.367 47.619 5.61 5.61 46.26 3.51
387 395 3.823304 AGATGCTCATAGCGATAGTGTGA 59.177 43.478 0.00 0.00 46.26 3.58
388 396 4.171663 AGATGCTCATAGCGATAGTGTG 57.828 45.455 0.00 0.00 46.26 3.82
389 397 4.614764 CGAAGATGCTCATAGCGATAGTGT 60.615 45.833 0.00 0.00 46.26 3.55
390 398 3.850837 CGAAGATGCTCATAGCGATAGTG 59.149 47.826 0.00 0.00 46.26 2.74
391 399 3.753797 TCGAAGATGCTCATAGCGATAGT 59.246 43.478 0.00 0.00 46.26 2.12
392 400 4.348198 TCGAAGATGCTCATAGCGATAG 57.652 45.455 0.00 0.00 46.26 2.08
393 401 4.766404 TTCGAAGATGCTCATAGCGATA 57.234 40.909 0.00 0.00 46.26 2.92
394 402 3.650070 TTCGAAGATGCTCATAGCGAT 57.350 42.857 0.00 0.00 46.26 4.58
395 403 3.066760 TCTTTCGAAGATGCTCATAGCGA 59.933 43.478 0.00 0.00 36.93 4.93
396 404 3.181377 GTCTTTCGAAGATGCTCATAGCG 59.819 47.826 0.00 0.00 40.18 4.26
397 405 4.208873 CAGTCTTTCGAAGATGCTCATAGC 59.791 45.833 0.00 0.00 40.18 2.97
398 406 5.586339 TCAGTCTTTCGAAGATGCTCATAG 58.414 41.667 0.00 0.00 40.18 2.23
399 407 5.126222 ACTCAGTCTTTCGAAGATGCTCATA 59.874 40.000 0.00 0.00 40.18 2.15
400 408 4.081752 ACTCAGTCTTTCGAAGATGCTCAT 60.082 41.667 0.00 0.00 40.18 2.90
401 409 3.256879 ACTCAGTCTTTCGAAGATGCTCA 59.743 43.478 0.00 0.00 40.18 4.26
402 410 3.843999 ACTCAGTCTTTCGAAGATGCTC 58.156 45.455 0.00 0.00 40.18 4.26
403 411 3.671971 CGACTCAGTCTTTCGAAGATGCT 60.672 47.826 2.61 0.00 40.18 3.79
404 412 2.596419 CGACTCAGTCTTTCGAAGATGC 59.404 50.000 2.61 0.00 40.18 3.91
405 413 3.175152 CCGACTCAGTCTTTCGAAGATG 58.825 50.000 2.61 0.00 40.18 2.90
406 414 2.416162 GCCGACTCAGTCTTTCGAAGAT 60.416 50.000 2.61 0.00 40.18 2.40
407 415 1.068472 GCCGACTCAGTCTTTCGAAGA 60.068 52.381 2.61 0.00 34.62 2.87
408 416 1.335964 TGCCGACTCAGTCTTTCGAAG 60.336 52.381 2.61 0.00 34.62 3.79
409 417 0.671796 TGCCGACTCAGTCTTTCGAA 59.328 50.000 2.61 0.00 34.62 3.71
410 418 0.888619 ATGCCGACTCAGTCTTTCGA 59.111 50.000 2.61 0.00 34.62 3.71
411 419 2.455032 CTATGCCGACTCAGTCTTTCG 58.545 52.381 2.61 0.00 0.00 3.46
412 420 2.197577 GCTATGCCGACTCAGTCTTTC 58.802 52.381 2.61 0.00 0.00 2.62
413 421 1.550524 TGCTATGCCGACTCAGTCTTT 59.449 47.619 2.61 0.00 0.00 2.52
414 422 1.186200 TGCTATGCCGACTCAGTCTT 58.814 50.000 2.61 0.00 0.00 3.01
415 423 1.339610 GATGCTATGCCGACTCAGTCT 59.660 52.381 2.61 0.00 0.00 3.24
416 424 1.339610 AGATGCTATGCCGACTCAGTC 59.660 52.381 0.00 0.00 0.00 3.51
417 425 1.407936 AGATGCTATGCCGACTCAGT 58.592 50.000 0.00 0.00 0.00 3.41
418 426 2.402305 GAAGATGCTATGCCGACTCAG 58.598 52.381 0.00 0.00 0.00 3.35
419 427 1.269257 CGAAGATGCTATGCCGACTCA 60.269 52.381 0.00 0.00 0.00 3.41
420 428 1.001268 TCGAAGATGCTATGCCGACTC 60.001 52.381 0.00 0.00 0.00 3.36
421 429 1.032794 TCGAAGATGCTATGCCGACT 58.967 50.000 0.00 0.00 0.00 4.18
422 430 1.723542 CATCGAAGATGCTATGCCGAC 59.276 52.381 0.00 0.00 45.12 4.79
423 431 1.337167 CCATCGAAGATGCTATGCCGA 60.337 52.381 4.60 0.00 45.12 5.54
424 432 1.073964 CCATCGAAGATGCTATGCCG 58.926 55.000 4.60 0.00 45.12 5.69
425 433 2.462456 TCCATCGAAGATGCTATGCC 57.538 50.000 4.60 0.00 45.12 4.40
426 434 3.561310 TGTTTCCATCGAAGATGCTATGC 59.439 43.478 4.60 0.00 45.12 3.14
427 435 5.924786 GATGTTTCCATCGAAGATGCTATG 58.075 41.667 4.60 0.00 45.12 2.23
442 450 3.703001 TCAGTGGAAGGAGATGTTTCC 57.297 47.619 0.00 0.00 42.56 3.13
443 451 6.385033 CATTTTCAGTGGAAGGAGATGTTTC 58.615 40.000 0.00 0.00 33.82 2.78
444 452 5.279156 GCATTTTCAGTGGAAGGAGATGTTT 60.279 40.000 0.00 0.00 33.82 2.83
445 453 4.219288 GCATTTTCAGTGGAAGGAGATGTT 59.781 41.667 0.00 0.00 33.82 2.71
446 454 3.760684 GCATTTTCAGTGGAAGGAGATGT 59.239 43.478 0.00 0.00 33.82 3.06
447 455 3.760151 TGCATTTTCAGTGGAAGGAGATG 59.240 43.478 0.00 0.00 33.82 2.90
448 456 4.038271 TGCATTTTCAGTGGAAGGAGAT 57.962 40.909 0.00 0.00 33.82 2.75
449 457 3.507162 TGCATTTTCAGTGGAAGGAGA 57.493 42.857 0.00 0.00 33.82 3.71
450 458 3.181503 CGATGCATTTTCAGTGGAAGGAG 60.182 47.826 0.00 0.00 33.82 3.69
451 459 2.749076 CGATGCATTTTCAGTGGAAGGA 59.251 45.455 0.00 0.00 33.82 3.36
452 460 2.733227 GCGATGCATTTTCAGTGGAAGG 60.733 50.000 0.00 0.00 33.82 3.46
453 461 2.523015 GCGATGCATTTTCAGTGGAAG 58.477 47.619 0.00 0.00 33.82 3.46
454 462 1.202114 GGCGATGCATTTTCAGTGGAA 59.798 47.619 0.00 0.00 0.00 3.53
455 463 0.810648 GGCGATGCATTTTCAGTGGA 59.189 50.000 0.00 0.00 0.00 4.02
456 464 0.523968 CGGCGATGCATTTTCAGTGG 60.524 55.000 0.00 0.00 0.00 4.00
457 465 0.523968 CCGGCGATGCATTTTCAGTG 60.524 55.000 9.30 0.00 0.00 3.66
458 466 0.676466 TCCGGCGATGCATTTTCAGT 60.676 50.000 9.30 0.00 0.00 3.41
459 467 0.451383 TTCCGGCGATGCATTTTCAG 59.549 50.000 9.30 0.00 0.00 3.02
460 468 0.884514 TTTCCGGCGATGCATTTTCA 59.115 45.000 9.30 0.00 0.00 2.69
461 469 2.208326 ATTTCCGGCGATGCATTTTC 57.792 45.000 9.30 0.00 0.00 2.29
462 470 2.671130 AATTTCCGGCGATGCATTTT 57.329 40.000 9.30 0.00 0.00 1.82
463 471 5.446143 TTATAATTTCCGGCGATGCATTT 57.554 34.783 9.30 0.00 0.00 2.32
464 472 5.446143 TTTATAATTTCCGGCGATGCATT 57.554 34.783 9.30 3.62 0.00 3.56
465 473 5.446143 TTTTATAATTTCCGGCGATGCAT 57.554 34.783 9.30 0.00 0.00 3.96
466 474 4.902443 TTTTATAATTTCCGGCGATGCA 57.098 36.364 9.30 0.00 0.00 3.96
467 475 7.861176 TTTATTTTATAATTTCCGGCGATGC 57.139 32.000 9.30 0.00 0.00 3.91
470 478 9.672086 CTGAATTTATTTTATAATTTCCGGCGA 57.328 29.630 9.30 0.00 0.00 5.54
471 479 9.672086 TCTGAATTTATTTTATAATTTCCGGCG 57.328 29.630 0.00 0.00 0.00 6.46
482 490 9.097257 CCCGTGCAATTTCTGAATTTATTTTAT 57.903 29.630 0.00 0.00 33.25 1.40
483 491 7.547370 CCCCGTGCAATTTCTGAATTTATTTTA 59.453 33.333 0.00 0.00 33.25 1.52
484 492 6.371271 CCCCGTGCAATTTCTGAATTTATTTT 59.629 34.615 0.00 0.00 33.25 1.82
485 493 5.874261 CCCCGTGCAATTTCTGAATTTATTT 59.126 36.000 0.00 0.00 33.25 1.40
486 494 5.186797 TCCCCGTGCAATTTCTGAATTTATT 59.813 36.000 0.00 0.00 33.25 1.40
487 495 4.709397 TCCCCGTGCAATTTCTGAATTTAT 59.291 37.500 0.00 0.00 33.25 1.40
488 496 4.082463 GTCCCCGTGCAATTTCTGAATTTA 60.082 41.667 0.00 0.00 33.25 1.40
489 497 2.896685 TCCCCGTGCAATTTCTGAATTT 59.103 40.909 0.00 0.00 33.25 1.82
490 498 2.231235 GTCCCCGTGCAATTTCTGAATT 59.769 45.455 0.00 0.00 35.90 2.17
491 499 1.818674 GTCCCCGTGCAATTTCTGAAT 59.181 47.619 0.00 0.00 0.00 2.57
492 500 1.202879 AGTCCCCGTGCAATTTCTGAA 60.203 47.619 0.00 0.00 0.00 3.02
493 501 0.400213 AGTCCCCGTGCAATTTCTGA 59.600 50.000 0.00 0.00 0.00 3.27
494 502 1.068333 CAAGTCCCCGTGCAATTTCTG 60.068 52.381 0.00 0.00 0.00 3.02
495 503 1.202879 TCAAGTCCCCGTGCAATTTCT 60.203 47.619 0.00 0.00 0.00 2.52
496 504 1.243902 TCAAGTCCCCGTGCAATTTC 58.756 50.000 0.00 0.00 0.00 2.17
497 505 1.698506 TTCAAGTCCCCGTGCAATTT 58.301 45.000 0.00 0.00 0.00 1.82
498 506 1.698506 TTTCAAGTCCCCGTGCAATT 58.301 45.000 0.00 0.00 0.00 2.32
499 507 1.698506 TTTTCAAGTCCCCGTGCAAT 58.301 45.000 0.00 0.00 0.00 3.56
500 508 1.339610 CATTTTCAAGTCCCCGTGCAA 59.660 47.619 0.00 0.00 0.00 4.08
501 509 0.958091 CATTTTCAAGTCCCCGTGCA 59.042 50.000 0.00 0.00 0.00 4.57
502 510 0.243636 CCATTTTCAAGTCCCCGTGC 59.756 55.000 0.00 0.00 0.00 5.34
503 511 1.269448 CACCATTTTCAAGTCCCCGTG 59.731 52.381 0.00 0.00 0.00 4.94
504 512 1.616159 CACCATTTTCAAGTCCCCGT 58.384 50.000 0.00 0.00 0.00 5.28
505 513 0.887933 CCACCATTTTCAAGTCCCCG 59.112 55.000 0.00 0.00 0.00 5.73
506 514 1.266178 CCCACCATTTTCAAGTCCCC 58.734 55.000 0.00 0.00 0.00 4.81
507 515 0.608130 GCCCACCATTTTCAAGTCCC 59.392 55.000 0.00 0.00 0.00 4.46
508 516 1.273327 CTGCCCACCATTTTCAAGTCC 59.727 52.381 0.00 0.00 0.00 3.85
509 517 2.229784 CTCTGCCCACCATTTTCAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
510 518 2.158475 TCTCTGCCCACCATTTTCAAGT 60.158 45.455 0.00 0.00 0.00 3.16
511 519 2.517959 TCTCTGCCCACCATTTTCAAG 58.482 47.619 0.00 0.00 0.00 3.02
512 520 2.673775 TCTCTGCCCACCATTTTCAA 57.326 45.000 0.00 0.00 0.00 2.69
513 521 2.905415 ATCTCTGCCCACCATTTTCA 57.095 45.000 0.00 0.00 0.00 2.69
514 522 2.952310 GGTATCTCTGCCCACCATTTTC 59.048 50.000 0.00 0.00 0.00 2.29
515 523 2.311542 TGGTATCTCTGCCCACCATTTT 59.688 45.455 0.00 0.00 36.15 1.82
516 524 1.922447 TGGTATCTCTGCCCACCATTT 59.078 47.619 0.00 0.00 36.15 2.32
517 525 1.212935 GTGGTATCTCTGCCCACCATT 59.787 52.381 0.00 0.00 42.72 3.16
518 526 0.839946 GTGGTATCTCTGCCCACCAT 59.160 55.000 0.00 0.00 42.72 3.55
519 527 2.296920 GTGGTATCTCTGCCCACCA 58.703 57.895 0.00 0.00 42.27 4.17
522 530 0.904649 CACAGTGGTATCTCTGCCCA 59.095 55.000 4.97 0.00 37.86 5.36
523 531 0.905357 ACACAGTGGTATCTCTGCCC 59.095 55.000 5.31 0.00 37.86 5.36
524 532 2.101582 CCTACACAGTGGTATCTCTGCC 59.898 54.545 5.31 0.00 37.86 4.85
525 533 2.761208 ACCTACACAGTGGTATCTCTGC 59.239 50.000 5.31 0.00 37.86 4.26
526 534 3.065510 CGACCTACACAGTGGTATCTCTG 59.934 52.174 5.31 3.50 39.59 3.35
527 535 3.054582 TCGACCTACACAGTGGTATCTCT 60.055 47.826 5.31 0.00 36.59 3.10
528 536 3.276857 TCGACCTACACAGTGGTATCTC 58.723 50.000 5.31 0.00 36.59 2.75
529 537 3.361281 TCGACCTACACAGTGGTATCT 57.639 47.619 5.31 0.00 36.59 1.98
530 538 4.608951 GAATCGACCTACACAGTGGTATC 58.391 47.826 5.31 0.00 36.59 2.24
531 539 3.066342 CGAATCGACCTACACAGTGGTAT 59.934 47.826 5.31 0.00 36.59 2.73
532 540 2.421073 CGAATCGACCTACACAGTGGTA 59.579 50.000 5.31 0.00 36.59 3.25
533 541 1.201647 CGAATCGACCTACACAGTGGT 59.798 52.381 5.31 0.00 39.60 4.16
534 542 1.909376 CGAATCGACCTACACAGTGG 58.091 55.000 5.31 0.00 0.00 4.00
535 543 1.135373 AGCGAATCGACCTACACAGTG 60.135 52.381 6.91 0.00 0.00 3.66
536 544 1.135373 CAGCGAATCGACCTACACAGT 60.135 52.381 6.91 0.00 0.00 3.55
537 545 1.135373 ACAGCGAATCGACCTACACAG 60.135 52.381 6.91 0.00 0.00 3.66
538 546 0.885879 ACAGCGAATCGACCTACACA 59.114 50.000 6.91 0.00 0.00 3.72
539 547 1.269166 CACAGCGAATCGACCTACAC 58.731 55.000 6.91 0.00 0.00 2.90
540 548 0.457853 GCACAGCGAATCGACCTACA 60.458 55.000 6.91 0.00 0.00 2.74
541 549 0.179134 AGCACAGCGAATCGACCTAC 60.179 55.000 6.91 0.00 0.00 3.18
542 550 0.100682 GAGCACAGCGAATCGACCTA 59.899 55.000 6.91 0.00 0.00 3.08
543 551 1.153745 GAGCACAGCGAATCGACCT 60.154 57.895 6.91 0.00 0.00 3.85
544 552 0.737715 AAGAGCACAGCGAATCGACC 60.738 55.000 6.91 0.00 0.00 4.79
545 553 1.584308 GTAAGAGCACAGCGAATCGAC 59.416 52.381 6.91 0.00 0.00 4.20
546 554 1.469251 GGTAAGAGCACAGCGAATCGA 60.469 52.381 6.91 0.00 0.00 3.59
547 555 0.924090 GGTAAGAGCACAGCGAATCG 59.076 55.000 0.00 0.00 0.00 3.34
548 556 1.291132 GGGTAAGAGCACAGCGAATC 58.709 55.000 0.00 0.00 0.00 2.52
549 557 0.460284 CGGGTAAGAGCACAGCGAAT 60.460 55.000 0.00 0.00 0.00 3.34
550 558 1.080093 CGGGTAAGAGCACAGCGAA 60.080 57.895 0.00 0.00 0.00 4.70
551 559 2.209064 GACGGGTAAGAGCACAGCGA 62.209 60.000 0.00 0.00 0.00 4.93
552 560 1.805945 GACGGGTAAGAGCACAGCG 60.806 63.158 0.00 0.00 0.00 5.18
553 561 1.014564 GTGACGGGTAAGAGCACAGC 61.015 60.000 0.00 0.00 0.00 4.40
554 562 0.317160 TGTGACGGGTAAGAGCACAG 59.683 55.000 0.00 0.00 34.85 3.66
570 578 2.344441 CGATGTGGTAGTAAACGCTGTG 59.656 50.000 0.00 0.00 0.00 3.66
1501 1528 1.727062 ACCATTGGACAAATGCCCAA 58.273 45.000 10.37 3.59 43.80 4.12
1525 1552 3.160269 CTCCTCCTTGATGTTTGCCTTT 58.840 45.455 0.00 0.00 0.00 3.11
1531 1558 4.640771 TGCTTACTCCTCCTTGATGTTT 57.359 40.909 0.00 0.00 0.00 2.83
1562 1589 5.123820 TCCAGTGAAGACAAACAAAGAACAG 59.876 40.000 0.00 0.00 0.00 3.16
1598 1625 8.931775 GCAAATCGTTTTATTAGGAAACCAATT 58.068 29.630 0.00 0.00 34.35 2.32
1702 1729 5.697473 TGATGTAGAAAAACGGAAATGCA 57.303 34.783 0.00 0.00 0.00 3.96
1881 1908 4.686554 GCTGTCTGAATTGTCTAAACGTCT 59.313 41.667 0.00 0.00 0.00 4.18
1901 1928 4.624015 ACATTGAACTGTTTTGGATGCTG 58.376 39.130 0.00 0.00 0.00 4.41
1904 1931 4.682860 GCTGACATTGAACTGTTTTGGATG 59.317 41.667 0.00 0.46 0.00 3.51
1905 1932 4.586001 AGCTGACATTGAACTGTTTTGGAT 59.414 37.500 0.00 0.00 0.00 3.41
1932 1959 7.950496 CCTTCGTTCTTCTTTATAAGACGTTTG 59.050 37.037 0.00 0.00 37.23 2.93
1947 1975 6.453926 AGTATTCTACTCCCTTCGTTCTTC 57.546 41.667 0.00 0.00 32.47 2.87
1954 1982 6.508777 CACAGCTAAGTATTCTACTCCCTTC 58.491 44.000 0.00 0.00 38.26 3.46
1955 1983 5.163395 GCACAGCTAAGTATTCTACTCCCTT 60.163 44.000 0.00 0.00 38.26 3.95
2078 2308 5.993748 TTGTCATGACAGGTGAGTATACA 57.006 39.130 26.48 6.50 42.94 2.29
2082 2312 7.552687 GGATAAAATTGTCATGACAGGTGAGTA 59.447 37.037 26.48 12.18 42.94 2.59
2418 2649 1.001815 CTGCCACAAACAAACTACGGG 60.002 52.381 0.00 0.00 0.00 5.28
2490 2721 7.039574 TGGATGATGAATGTGTTGTCTGATTTT 60.040 33.333 0.00 0.00 0.00 1.82
2625 2856 8.898983 TGCAAAAACGCCTTATATTTAGTTAC 57.101 30.769 0.00 0.00 0.00 2.50
2912 3143 3.670203 GAAATGGCATTTCGTCGTACTG 58.330 45.455 30.66 0.00 39.23 2.74
3225 3465 1.812922 GCCTCGCCATGACTCACTG 60.813 63.158 0.00 0.00 0.00 3.66
3458 3702 3.490439 TGCCATCTTTCTCACAGAACA 57.510 42.857 0.00 0.00 33.26 3.18
3491 3735 4.040339 AGGGGCTCTTGGTTGTTTAATTTG 59.960 41.667 0.00 0.00 0.00 2.32
3592 3836 5.240403 ACAAGATCAACAAGCCTTTCTTCTC 59.760 40.000 0.00 0.00 31.27 2.87
3948 4518 6.437477 GGTCCTTCTCACTGGGATTAAAATTT 59.563 38.462 0.00 0.00 0.00 1.82
3955 4525 2.044793 TGGTCCTTCTCACTGGGATT 57.955 50.000 0.00 0.00 0.00 3.01
3957 4527 1.132849 TCTTGGTCCTTCTCACTGGGA 60.133 52.381 0.00 0.00 0.00 4.37
4003 4573 1.839354 TCAGGCAATATCTGTCCAGCA 59.161 47.619 0.00 0.00 34.15 4.41
4077 4647 2.492088 GGTTGCTGTCCAATACCCTTTC 59.508 50.000 0.00 0.00 35.55 2.62
4437 5008 1.127951 CTAGTGTTTACCGCCGCAAAG 59.872 52.381 0.00 0.00 0.00 2.77
4480 5051 6.483640 GCGGTAAATCTGAATTCTCCAATAGT 59.516 38.462 7.05 0.00 0.00 2.12
4551 5122 3.890527 GGTACCTCAGACGTCCCTA 57.109 57.895 13.01 0.00 0.00 3.53
4576 5147 2.132089 TAACCGCTCCCCCAACCTTG 62.132 60.000 0.00 0.00 0.00 3.61
4585 5156 0.107654 AAGCTGTGATAACCGCTCCC 60.108 55.000 0.00 0.00 31.30 4.30
4724 5295 8.412608 TGCAAAATTGAGTCAATTCGTTTTAA 57.587 26.923 27.07 10.67 42.32 1.52
4936 5511 1.987807 CTGCCGGTGATGATTCCCCT 61.988 60.000 1.90 0.00 0.00 4.79
5164 5741 0.034089 ATAGACCTGGCTGGGTTTGC 60.034 55.000 15.36 0.00 40.06 3.68
5337 5914 3.581024 CAAGTTGGCTACATGCATGTT 57.419 42.857 35.45 19.99 45.15 2.71
5416 5993 4.034858 GCTAGTGCCCCGTTAATAAAGTTC 59.965 45.833 0.00 0.00 0.00 3.01
5424 6001 1.196104 AGGTGCTAGTGCCCCGTTAA 61.196 55.000 0.00 0.00 41.75 2.01
5447 6024 2.617788 CCCACCTGGATTCGAAACATGA 60.618 50.000 0.00 0.00 37.39 3.07
5503 6080 4.284123 CGCAGCTCAGTTGGCTAA 57.716 55.556 0.00 0.00 38.03 3.09
5620 6233 8.886719 TGAAAACAATGACATGAGACTGATATC 58.113 33.333 0.00 0.00 0.00 1.63
5635 6248 6.479660 GGCAAAACTCATCTTGAAAACAATGA 59.520 34.615 0.00 0.00 0.00 2.57
5650 6263 4.385825 CCAGTAGTAAGTGGCAAAACTCA 58.614 43.478 0.00 0.00 39.36 3.41
5736 6352 2.159517 GGAAACTTGCATAAGGACGCTG 60.160 50.000 0.00 0.00 38.26 5.18
5901 6523 5.247862 AGTTTTATGACCGACCCGTAATTT 58.752 37.500 0.00 0.00 0.00 1.82
5966 6588 8.517878 TCCAGAAGAATTGTGAGAATTTCAATC 58.482 33.333 0.00 0.00 42.84 2.67
6015 6637 4.815040 TTTTTGTCTATTGCCGAACGAA 57.185 36.364 0.00 0.00 0.00 3.85
6532 7159 3.474798 ACTGAATGGACCAGGAGACTA 57.525 47.619 0.00 0.00 40.21 2.59
6558 7185 3.193479 GGATCCTTCATTTCCGCTTTGTT 59.807 43.478 3.84 0.00 0.00 2.83
6566 7193 5.995446 AGTACTCAAGGATCCTTCATTTCC 58.005 41.667 24.67 10.67 33.42 3.13
6596 7223 9.664777 TGTAATATACTTCCCATGGTAAGTACT 57.335 33.333 26.87 18.95 40.10 2.73
6597 7224 9.924650 CTGTAATATACTTCCCATGGTAAGTAC 57.075 37.037 26.87 18.69 40.10 2.73
6598 7225 8.591072 GCTGTAATATACTTCCCATGGTAAGTA 58.409 37.037 26.61 26.61 41.18 2.24
6599 7226 7.450903 GCTGTAATATACTTCCCATGGTAAGT 58.549 38.462 24.27 24.27 39.25 2.24
6642 7275 2.026449 AGCAGGATGTTCTTAAGCAGCT 60.026 45.455 0.00 0.00 39.31 4.24
6723 7356 2.300437 AGTCTGAAGTCCCTCGAAAAGG 59.700 50.000 0.00 0.00 45.77 3.11
6812 7446 3.249320 AGCACAGCTATACATGCAAATCG 59.751 43.478 0.00 0.00 40.63 3.34
6962 7596 7.765695 ACTTTTTGCAGAGAATCATAAGGAA 57.234 32.000 1.44 0.00 37.82 3.36
6976 7610 6.586868 TTTTGCATTCACTACTTTTTGCAG 57.413 33.333 0.00 0.00 40.72 4.41
7030 7664 2.610976 CCACCATTGCATGTGTCCTTTG 60.611 50.000 9.74 0.00 0.00 2.77
7031 7665 1.619827 CCACCATTGCATGTGTCCTTT 59.380 47.619 9.74 0.00 0.00 3.11
7032 7666 1.259609 CCACCATTGCATGTGTCCTT 58.740 50.000 9.74 0.00 0.00 3.36
7033 7667 0.612732 CCCACCATTGCATGTGTCCT 60.613 55.000 9.74 0.00 0.00 3.85
7034 7668 0.611618 TCCCACCATTGCATGTGTCC 60.612 55.000 9.74 0.00 0.00 4.02
7035 7669 0.527565 GTCCCACCATTGCATGTGTC 59.472 55.000 9.74 0.00 0.00 3.67
7036 7670 0.112995 AGTCCCACCATTGCATGTGT 59.887 50.000 9.74 0.00 0.00 3.72
7037 7671 0.813184 GAGTCCCACCATTGCATGTG 59.187 55.000 0.00 0.00 0.00 3.21
7038 7672 0.677731 CGAGTCCCACCATTGCATGT 60.678 55.000 0.00 0.00 0.00 3.21
7039 7673 1.378882 CCGAGTCCCACCATTGCATG 61.379 60.000 0.00 0.00 0.00 4.06
7040 7674 1.077501 CCGAGTCCCACCATTGCAT 60.078 57.895 0.00 0.00 0.00 3.96
7041 7675 2.350895 CCGAGTCCCACCATTGCA 59.649 61.111 0.00 0.00 0.00 4.08
7042 7676 3.134127 GCCGAGTCCCACCATTGC 61.134 66.667 0.00 0.00 0.00 3.56
7043 7677 1.746615 CTGCCGAGTCCCACCATTG 60.747 63.158 0.00 0.00 0.00 2.82
7044 7678 2.671070 CTGCCGAGTCCCACCATT 59.329 61.111 0.00 0.00 0.00 3.16
7045 7679 3.402681 CCTGCCGAGTCCCACCAT 61.403 66.667 0.00 0.00 0.00 3.55
7046 7680 4.954118 ACCTGCCGAGTCCCACCA 62.954 66.667 0.00 0.00 0.00 4.17
7047 7681 4.394712 CACCTGCCGAGTCCCACC 62.395 72.222 0.00 0.00 0.00 4.61
7048 7682 4.394712 CCACCTGCCGAGTCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
7049 7683 3.924013 ATCCACCTGCCGAGTCCCA 62.924 63.158 0.00 0.00 0.00 4.37
7050 7684 3.083997 ATCCACCTGCCGAGTCCC 61.084 66.667 0.00 0.00 0.00 4.46
7051 7685 2.501610 GATCCACCTGCCGAGTCC 59.498 66.667 0.00 0.00 0.00 3.85
7052 7686 2.501610 GGATCCACCTGCCGAGTC 59.498 66.667 6.95 0.00 35.41 3.36
7061 7695 1.594331 GGCGTCAAATAGGATCCACC 58.406 55.000 15.82 0.00 39.35 4.61
7062 7696 1.594331 GGGCGTCAAATAGGATCCAC 58.406 55.000 15.82 0.54 0.00 4.02
7063 7697 0.105964 CGGGCGTCAAATAGGATCCA 59.894 55.000 15.82 0.00 0.00 3.41
7064 7698 1.228657 GCGGGCGTCAAATAGGATCC 61.229 60.000 2.48 2.48 0.00 3.36
7065 7699 1.557443 CGCGGGCGTCAAATAGGATC 61.557 60.000 4.64 0.00 34.35 3.36
7066 7700 1.594293 CGCGGGCGTCAAATAGGAT 60.594 57.895 4.64 0.00 34.35 3.24
7067 7701 2.202824 CGCGGGCGTCAAATAGGA 60.203 61.111 4.64 0.00 34.35 2.94
7068 7702 2.202824 TCGCGGGCGTCAAATAGG 60.203 61.111 13.21 0.00 40.74 2.57
7069 7703 1.518572 ACTCGCGGGCGTCAAATAG 60.519 57.895 5.51 4.40 40.74 1.73
7070 7704 1.807981 CACTCGCGGGCGTCAAATA 60.808 57.895 5.51 0.00 40.74 1.40
7071 7705 3.118454 CACTCGCGGGCGTCAAAT 61.118 61.111 5.51 0.00 40.74 2.32
7072 7706 4.595538 ACACTCGCGGGCGTCAAA 62.596 61.111 5.51 0.00 40.74 2.69
7079 7713 4.135153 CTCCTGGACACTCGCGGG 62.135 72.222 3.27 3.27 0.00 6.13
7080 7714 2.549611 CTTCTCCTGGACACTCGCGG 62.550 65.000 6.13 0.00 0.00 6.46
7081 7715 1.153939 CTTCTCCTGGACACTCGCG 60.154 63.158 0.00 0.00 0.00 5.87
7082 7716 0.389166 CACTTCTCCTGGACACTCGC 60.389 60.000 0.00 0.00 0.00 5.03
7083 7717 0.244994 CCACTTCTCCTGGACACTCG 59.755 60.000 0.00 0.00 0.00 4.18
7084 7718 0.036858 GCCACTTCTCCTGGACACTC 60.037 60.000 0.00 0.00 0.00 3.51
7085 7719 0.472734 AGCCACTTCTCCTGGACACT 60.473 55.000 0.00 0.00 0.00 3.55
7086 7720 0.398318 AAGCCACTTCTCCTGGACAC 59.602 55.000 0.00 0.00 0.00 3.67
7087 7721 0.687354 GAAGCCACTTCTCCTGGACA 59.313 55.000 0.00 0.00 37.49 4.02
7088 7722 0.390472 CGAAGCCACTTCTCCTGGAC 60.390 60.000 5.85 0.00 38.24 4.02
7089 7723 1.975327 CGAAGCCACTTCTCCTGGA 59.025 57.895 5.85 0.00 38.24 3.86
7090 7724 4.606071 CGAAGCCACTTCTCCTGG 57.394 61.111 5.85 0.00 38.24 4.45
7140 7774 3.726595 TAATTCGCGAGGTGGGCCG 62.727 63.158 9.59 0.00 40.50 6.13
7141 7775 1.027792 TTTAATTCGCGAGGTGGGCC 61.028 55.000 9.59 0.00 0.00 5.80
7142 7776 0.377203 CTTTAATTCGCGAGGTGGGC 59.623 55.000 9.59 0.00 0.00 5.36
7143 7777 0.377203 GCTTTAATTCGCGAGGTGGG 59.623 55.000 9.59 0.76 0.00 4.61
7144 7778 3.897819 GCTTTAATTCGCGAGGTGG 57.102 52.632 9.59 0.18 0.00 4.61
7151 7785 1.259316 CTGGCAACGCTTTAATTCGC 58.741 50.000 0.00 0.00 42.51 4.70
7152 7786 1.895051 CCTGGCAACGCTTTAATTCG 58.105 50.000 0.00 0.00 42.51 3.34
7153 7787 1.067915 TGCCTGGCAACGCTTTAATTC 60.068 47.619 21.08 0.00 34.76 2.17
7154 7788 0.965439 TGCCTGGCAACGCTTTAATT 59.035 45.000 21.08 0.00 34.76 1.40
7155 7789 0.965439 TTGCCTGGCAACGCTTTAAT 59.035 45.000 29.24 0.00 43.99 1.40
7156 7790 2.420138 TTGCCTGGCAACGCTTTAA 58.580 47.368 29.24 5.61 43.99 1.52
7157 7791 4.165926 TTGCCTGGCAACGCTTTA 57.834 50.000 29.24 6.43 43.99 1.85
7165 7799 2.909965 GAACCGGTTTGCCTGGCA 60.910 61.111 23.22 19.30 36.47 4.92
7166 7800 2.597510 AGAACCGGTTTGCCTGGC 60.598 61.111 23.22 12.87 33.64 4.85
7167 7801 2.268076 CCAGAACCGGTTTGCCTGG 61.268 63.158 29.11 29.11 38.48 4.45
7168 7802 2.268076 CCCAGAACCGGTTTGCCTG 61.268 63.158 23.22 22.35 0.00 4.85
7169 7803 2.002018 TTCCCAGAACCGGTTTGCCT 62.002 55.000 23.22 11.49 0.00 4.75
7170 7804 1.529713 TTCCCAGAACCGGTTTGCC 60.530 57.895 23.22 9.01 0.00 4.52
7171 7805 1.658114 GTTCCCAGAACCGGTTTGC 59.342 57.895 23.22 9.84 0.00 3.68
7172 7806 0.179001 AGGTTCCCAGAACCGGTTTG 60.179 55.000 23.22 19.63 44.82 2.93
7173 7807 0.554305 AAGGTTCCCAGAACCGGTTT 59.446 50.000 23.22 8.75 44.82 3.27
7174 7808 0.109913 GAAGGTTCCCAGAACCGGTT 59.890 55.000 22.50 22.50 44.82 4.44
7175 7809 0.767060 AGAAGGTTCCCAGAACCGGT 60.767 55.000 18.28 0.00 44.82 5.28
7176 7810 1.207329 CTAGAAGGTTCCCAGAACCGG 59.793 57.143 18.28 0.00 44.82 5.28
7177 7811 2.176889 TCTAGAAGGTTCCCAGAACCG 58.823 52.381 18.28 6.47 44.82 4.44
7178 7812 4.209307 CTTCTAGAAGGTTCCCAGAACC 57.791 50.000 22.67 17.02 40.58 3.62
7216 7850 7.013464 TCAGAAAACCGGCAAAGAGTATAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
7217 7851 6.487331 TCAGAAAACCGGCAAAGAGTATAAAA 59.513 34.615 0.00 0.00 0.00 1.52
7218 7852 5.998981 TCAGAAAACCGGCAAAGAGTATAAA 59.001 36.000 0.00 0.00 0.00 1.40
7219 7853 5.553123 TCAGAAAACCGGCAAAGAGTATAA 58.447 37.500 0.00 0.00 0.00 0.98
7220 7854 5.155278 TCAGAAAACCGGCAAAGAGTATA 57.845 39.130 0.00 0.00 0.00 1.47
7221 7855 4.015872 TCAGAAAACCGGCAAAGAGTAT 57.984 40.909 0.00 0.00 0.00 2.12
7222 7856 3.478857 TCAGAAAACCGGCAAAGAGTA 57.521 42.857 0.00 0.00 0.00 2.59
7223 7857 2.341846 TCAGAAAACCGGCAAAGAGT 57.658 45.000 0.00 0.00 0.00 3.24
7224 7858 3.923017 AATCAGAAAACCGGCAAAGAG 57.077 42.857 0.00 0.00 0.00 2.85
7225 7859 4.664150 AAAATCAGAAAACCGGCAAAGA 57.336 36.364 0.00 0.00 0.00 2.52
7226 7860 4.808364 TGAAAAATCAGAAAACCGGCAAAG 59.192 37.500 0.00 0.00 0.00 2.77
7227 7861 4.759782 TGAAAAATCAGAAAACCGGCAAA 58.240 34.783 0.00 0.00 0.00 3.68
7228 7862 4.392921 TGAAAAATCAGAAAACCGGCAA 57.607 36.364 0.00 0.00 0.00 4.52
7229 7863 4.202202 ACATGAAAAATCAGAAAACCGGCA 60.202 37.500 0.00 0.00 0.00 5.69
7230 7864 4.306600 ACATGAAAAATCAGAAAACCGGC 58.693 39.130 0.00 0.00 0.00 6.13
7231 7865 7.538575 AGATACATGAAAAATCAGAAAACCGG 58.461 34.615 0.00 0.00 0.00 5.28
7232 7866 8.970691 AAGATACATGAAAAATCAGAAAACCG 57.029 30.769 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.