Multiple sequence alignment - TraesCS1D01G240500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G240500 chr1D 100.000 9194 0 0 1 9194 330541962 330532769 0.000000e+00 16979.0
1 TraesCS1D01G240500 chr1D 84.480 1817 191 49 3471 5235 330537474 330535697 0.000000e+00 1709.0
2 TraesCS1D01G240500 chr1D 84.480 1817 191 51 4489 6266 330538492 330536728 0.000000e+00 1709.0
3 TraesCS1D01G240500 chr1D 80.304 1051 161 32 2440 3474 330537542 330536522 0.000000e+00 752.0
4 TraesCS1D01G240500 chr1D 80.977 983 145 25 2520 3474 330538487 330537519 0.000000e+00 741.0
5 TraesCS1D01G240500 chr1D 80.977 983 145 25 3476 4444 330539443 330538489 0.000000e+00 741.0
6 TraesCS1D01G240500 chr1D 80.385 882 101 37 2440 3278 330536544 330535692 1.020000e-168 604.0
7 TraesCS1D01G240500 chr1D 80.385 882 101 36 5419 6271 330539523 330538685 1.020000e-168 604.0
8 TraesCS1D01G240500 chr1D 79.900 801 108 24 3471 4236 330536479 330535697 1.050000e-148 538.0
9 TraesCS1D01G240500 chr1D 79.900 801 108 24 5484 6266 330538492 330537727 1.050000e-148 538.0
10 TraesCS1D01G240500 chr1D 96.471 170 6 0 6828 6997 178466474 178466305 1.950000e-71 281.0
11 TraesCS1D01G240500 chr1D 100.000 42 0 0 7302 7343 463867599 463867558 2.750000e-10 78.7
12 TraesCS1D01G240500 chr1D 100.000 41 0 0 7302 7342 179631884 179631844 9.900000e-10 76.8
13 TraesCS1D01G240500 chr1D 94.000 50 2 1 7290 7339 40904611 40904563 3.560000e-09 75.0
14 TraesCS1D01G240500 chr1D 93.878 49 3 0 7293 7341 122836839 122836887 3.560000e-09 75.0
15 TraesCS1D01G240500 chr1A 96.699 5484 101 25 846 6276 427527932 427522476 0.000000e+00 9051.0
16 TraesCS1D01G240500 chr1A 95.860 1570 35 10 6995 8557 427522128 427520582 0.000000e+00 2512.0
17 TraesCS1D01G240500 chr1A 84.457 1840 197 51 3471 5255 427524267 427522462 0.000000e+00 1731.0
18 TraesCS1D01G240500 chr1A 83.875 1817 196 52 4489 6266 427525285 427523527 0.000000e+00 1642.0
19 TraesCS1D01G240500 chr1A 89.239 762 53 15 18 759 427810927 427810175 0.000000e+00 926.0
20 TraesCS1D01G240500 chr1A 81.180 983 143 26 3476 4444 427526236 427525282 0.000000e+00 752.0
21 TraesCS1D01G240500 chr1A 80.570 983 149 26 2520 3474 427525280 427524312 0.000000e+00 719.0
22 TraesCS1D01G240500 chr1A 79.734 1051 162 33 2440 3474 427524335 427523320 0.000000e+00 713.0
23 TraesCS1D01G240500 chr1A 97.481 397 10 0 5792 6188 292909500 292909896 0.000000e+00 678.0
24 TraesCS1D01G240500 chr1A 91.463 492 28 7 422 906 427528408 427527924 0.000000e+00 664.0
25 TraesCS1D01G240500 chr1A 81.021 901 106 36 2440 3294 427523342 427522461 0.000000e+00 656.0
26 TraesCS1D01G240500 chr1A 79.854 958 115 40 5346 6271 427526389 427525478 6.060000e-176 628.0
27 TraesCS1D01G240500 chr1A 93.532 402 25 1 8560 8960 427520495 427520094 1.710000e-166 597.0
28 TraesCS1D01G240500 chr1A 80.649 801 112 20 3471 4236 427523277 427522485 1.720000e-161 580.0
29 TraesCS1D01G240500 chr1A 80.050 802 105 27 5484 6266 427525285 427524520 2.260000e-150 544.0
30 TraesCS1D01G240500 chr1A 96.393 305 11 0 6529 6833 427522431 427522127 3.830000e-138 503.0
31 TraesCS1D01G240500 chr1A 92.971 313 18 2 824 1132 427702919 427702607 3.910000e-123 453.0
32 TraesCS1D01G240500 chr1A 82.793 401 54 10 2803 3194 292909500 292909894 2.460000e-90 344.0
33 TraesCS1D01G240500 chr1A 82.134 403 62 8 3761 4159 292909500 292909896 4.110000e-88 337.0
34 TraesCS1D01G240500 chr1A 89.404 151 13 2 9004 9153 427520085 427519937 4.380000e-43 187.0
35 TraesCS1D01G240500 chr1A 89.362 141 15 0 4363 4503 509060178 509060318 2.640000e-40 178.0
36 TraesCS1D01G240500 chr1A 98.837 86 1 0 6460 6545 427522475 427522390 4.450000e-33 154.0
37 TraesCS1D01G240500 chr1A 89.831 59 4 2 7283 7340 508630941 508630998 3.560000e-09 75.0
38 TraesCS1D01G240500 chr1A 97.619 42 1 0 7302 7343 122498316 122498275 1.280000e-08 73.1
39 TraesCS1D01G240500 chr1B 96.359 3049 64 13 573 3601 445200925 445197904 0.000000e+00 4972.0
40 TraesCS1D01G240500 chr1B 98.253 2747 39 7 3726 6466 445197566 445194823 0.000000e+00 4798.0
41 TraesCS1D01G240500 chr1B 95.818 1602 39 9 6976 8557 445194393 445192800 0.000000e+00 2562.0
42 TraesCS1D01G240500 chr1B 84.231 1820 194 48 3471 5235 445196803 445195022 0.000000e+00 1685.0
43 TraesCS1D01G240500 chr1B 83.675 1562 166 48 4743 6266 445197566 445196056 0.000000e+00 1389.0
44 TraesCS1D01G240500 chr1B 80.400 1051 161 31 2440 3474 445196871 445195850 0.000000e+00 758.0
45 TraesCS1D01G240500 chr1B 90.973 565 30 10 13 560 445426476 445425916 0.000000e+00 741.0
46 TraesCS1D01G240500 chr1B 97.326 374 10 0 6460 6833 445194771 445194398 3.620000e-178 636.0
47 TraesCS1D01G240500 chr1B 80.023 881 106 35 5419 6271 445199066 445198228 1.030000e-163 588.0
48 TraesCS1D01G240500 chr1B 79.726 804 107 23 3471 4236 445195807 445195022 1.760000e-146 531.0
49 TraesCS1D01G240500 chr1B 83.026 542 70 13 2755 3280 445195550 445195015 1.080000e-128 472.0
50 TraesCS1D01G240500 chr1B 83.301 515 75 8 5758 6266 445197565 445197056 1.810000e-126 464.0
51 TraesCS1D01G240500 chr1B 93.750 288 15 1 8865 9152 445184735 445184451 6.600000e-116 429.0
52 TraesCS1D01G240500 chr1B 94.388 196 9 2 8559 8752 445192715 445192520 5.400000e-77 300.0
53 TraesCS1D01G240500 chr1B 91.912 136 4 4 8739 8867 445184998 445184863 5.670000e-42 183.0
54 TraesCS1D01G240500 chr1B 86.047 129 17 1 17 144 471768460 471768588 4.480000e-28 137.0
55 TraesCS1D01G240500 chr1B 81.955 133 23 1 16 147 527844445 527844313 2.710000e-20 111.0
56 TraesCS1D01G240500 chr1B 100.000 42 0 0 6504 6545 445194702 445194661 2.750000e-10 78.7
57 TraesCS1D01G240500 chr1B 100.000 42 0 0 6529 6570 445194727 445194686 2.750000e-10 78.7
58 TraesCS1D01G240500 chr6D 95.183 1204 33 8 4999 6188 220271013 220272205 0.000000e+00 1879.0
59 TraesCS1D01G240500 chr6D 79.529 1231 153 50 3983 5156 220271013 220272201 0.000000e+00 785.0
60 TraesCS1D01G240500 chr6D 76.657 724 108 25 3471 4159 220271508 220272205 2.460000e-90 344.0
61 TraesCS1D01G240500 chr6D 77.106 463 65 21 2440 2891 225593748 225593316 7.180000e-56 230.0
62 TraesCS1D01G240500 chr6D 82.328 232 34 6 3471 3697 225593677 225593448 2.620000e-45 195.0
63 TraesCS1D01G240500 chr6D 84.817 191 25 3 6276 6466 67072078 67072264 1.220000e-43 189.0
64 TraesCS1D01G240500 chr6D 79.000 300 38 9 2447 2744 220271450 220271726 2.040000e-41 182.0
65 TraesCS1D01G240500 chr6D 82.734 139 23 1 13 151 403034882 403035019 1.250000e-23 122.0
66 TraesCS1D01G240500 chr6D 81.081 111 12 6 3045 3146 225593319 225593209 7.650000e-11 80.5
67 TraesCS1D01G240500 chr6D 97.674 43 1 0 7299 7341 8551058 8551100 3.560000e-09 75.0
68 TraesCS1D01G240500 chr6D 100.000 40 0 0 7302 7341 268067151 268067112 3.560000e-09 75.0
69 TraesCS1D01G240500 chr6D 100.000 40 0 0 7302 7341 361523819 361523780 3.560000e-09 75.0
70 TraesCS1D01G240500 chr6D 100.000 40 0 0 7302 7341 449284108 449284147 3.560000e-09 75.0
71 TraesCS1D01G240500 chr6D 93.750 48 3 0 7293 7340 3274388 3274435 1.280000e-08 73.1
72 TraesCS1D01G240500 chr7D 97.325 972 24 2 5060 6030 205656585 205657555 0.000000e+00 1650.0
73 TraesCS1D01G240500 chr7D 81.762 965 124 23 4069 5000 205656596 205657541 0.000000e+00 760.0
74 TraesCS1D01G240500 chr7D 96.474 397 14 0 5792 6188 287709604 287710000 0.000000e+00 656.0
75 TraesCS1D01G240500 chr7D 78.425 635 78 28 2440 3042 205656945 205657552 8.780000e-95 359.0
76 TraesCS1D01G240500 chr7D 82.878 403 59 7 3761 4159 287709604 287710000 4.080000e-93 353.0
77 TraesCS1D01G240500 chr7D 81.796 401 58 10 2803 3194 287709604 287709998 1.150000e-83 322.0
78 TraesCS1D01G240500 chr7D 95.732 164 7 0 6025 6188 205667894 205668057 1.970000e-66 265.0
79 TraesCS1D01G240500 chr7D 77.754 463 62 21 2440 2891 351625586 351625154 7.130000e-61 246.0
80 TraesCS1D01G240500 chr7D 84.466 206 29 3 3471 3674 351625515 351625311 5.630000e-47 200.0
81 TraesCS1D01G240500 chr7D 86.243 189 17 6 6274 6462 512434438 512434259 7.280000e-46 196.0
82 TraesCS1D01G240500 chr7D 88.732 71 5 1 433 503 467922593 467922526 5.920000e-12 84.2
83 TraesCS1D01G240500 chr7D 81.081 111 12 6 3045 3146 351625157 351625047 7.650000e-11 80.5
84 TraesCS1D01G240500 chr7D 88.235 68 3 5 7302 7367 568622311 568622375 9.900000e-10 76.8
85 TraesCS1D01G240500 chr3B 84.436 771 102 12 3691 4448 418646953 418647718 0.000000e+00 743.0
86 TraesCS1D01G240500 chr3B 83.742 775 88 24 4708 5449 418646953 418647722 0.000000e+00 699.0
87 TraesCS1D01G240500 chr3B 82.836 134 22 1 16 148 588154413 588154280 1.620000e-22 119.0
88 TraesCS1D01G240500 chr3B 96.000 50 1 1 7301 7349 754719625 754719674 7.650000e-11 80.5
89 TraesCS1D01G240500 chr3A 84.383 762 91 17 4708 5445 432016291 432017048 0.000000e+00 723.0
90 TraesCS1D01G240500 chr3A 84.088 773 93 20 3691 4448 432016291 432017048 0.000000e+00 719.0
91 TraesCS1D01G240500 chr3A 76.993 765 130 30 2738 3474 432016298 432017044 6.690000e-106 396.0
92 TraesCS1D01G240500 chr3A 96.491 171 6 0 6826 6996 671642737 671642907 5.430000e-72 283.0
93 TraesCS1D01G240500 chr3D 82.637 622 73 18 4859 5448 302872746 302872128 1.370000e-142 518.0
94 TraesCS1D01G240500 chr3D 97.059 170 5 0 6827 6996 4171112 4171281 4.200000e-73 287.0
95 TraesCS1D01G240500 chr3D 76.033 605 97 28 2887 3456 302872743 302872152 4.230000e-68 270.0
96 TraesCS1D01G240500 chr3D 77.106 463 65 22 2440 2891 480833306 480833738 7.180000e-56 230.0
97 TraesCS1D01G240500 chr3D 76.890 463 66 21 2440 2891 5420884 5420452 3.340000e-54 224.0
98 TraesCS1D01G240500 chr3D 84.500 200 28 3 3471 3668 480833377 480833575 2.620000e-45 195.0
99 TraesCS1D01G240500 chr3D 76.966 178 25 11 4340 4503 124567926 124567751 4.570000e-13 87.9
100 TraesCS1D01G240500 chr3D 81.081 111 12 6 3045 3146 5420455 5420345 7.650000e-11 80.5
101 TraesCS1D01G240500 chr3D 81.081 111 12 6 3045 3146 480833735 480833845 7.650000e-11 80.5
102 TraesCS1D01G240500 chr3D 94.340 53 2 1 7301 7352 566132385 566132333 7.650000e-11 80.5
103 TraesCS1D01G240500 chr6A 88.433 268 26 4 4812 5075 65558312 65558046 1.490000e-82 318.0
104 TraesCS1D01G240500 chr6A 77.042 453 63 22 2440 2881 576904061 576904483 1.200000e-53 222.0
105 TraesCS1D01G240500 chr6A 84.000 200 29 3 3471 3668 576904132 576904330 1.220000e-43 189.0
106 TraesCS1D01G240500 chr6A 100.000 43 0 0 7302 7344 101438316 101438274 7.650000e-11 80.5
107 TraesCS1D01G240500 chrUn 87.833 263 27 4 4812 5070 39183583 39183844 4.170000e-78 303.0
108 TraesCS1D01G240500 chrUn 92.982 57 1 3 7289 7343 119047575 119047630 7.650000e-11 80.5
109 TraesCS1D01G240500 chrUn 100.000 39 0 0 7302 7340 17148645 17148683 1.280000e-08 73.1
110 TraesCS1D01G240500 chrUn 100.000 39 0 0 7302 7340 19741233 19741195 1.280000e-08 73.1
111 TraesCS1D01G240500 chrUn 100.000 39 0 0 7302 7340 19782925 19782887 1.280000e-08 73.1
112 TraesCS1D01G240500 chrUn 100.000 39 0 0 7302 7340 23900891 23900853 1.280000e-08 73.1
113 TraesCS1D01G240500 chrUn 93.750 48 3 0 7293 7340 23900890 23900937 1.280000e-08 73.1
114 TraesCS1D01G240500 chrUn 97.619 42 1 0 7299 7340 62344969 62345010 1.280000e-08 73.1
115 TraesCS1D01G240500 chrUn 97.619 42 1 0 7299 7340 62462010 62462051 1.280000e-08 73.1
116 TraesCS1D01G240500 chrUn 97.619 42 1 0 7299 7340 62534022 62534063 1.280000e-08 73.1
117 TraesCS1D01G240500 chrUn 97.619 42 1 0 7299 7340 62590434 62590475 1.280000e-08 73.1
118 TraesCS1D01G240500 chrUn 100.000 39 0 0 7302 7340 94847010 94846972 1.280000e-08 73.1
119 TraesCS1D01G240500 chrUn 95.652 46 1 1 7299 7343 135090761 135090806 1.280000e-08 73.1
120 TraesCS1D01G240500 chrUn 95.652 46 1 1 7299 7343 152687617 152687662 1.280000e-08 73.1
121 TraesCS1D01G240500 chrUn 97.619 42 1 0 7299 7340 224653352 224653393 1.280000e-08 73.1
122 TraesCS1D01G240500 chr5D 97.605 167 4 0 6831 6997 321902079 321901913 4.200000e-73 287.0
123 TraesCS1D01G240500 chr5D 85.437 103 13 1 42 144 563352206 563352106 1.260000e-18 106.0
124 TraesCS1D01G240500 chr5D 84.466 103 16 0 42 144 345085239 345085137 1.630000e-17 102.0
125 TraesCS1D01G240500 chr5D 91.667 60 3 2 7281 7340 555922787 555922844 2.130000e-11 82.4
126 TraesCS1D01G240500 chr5D 100.000 28 0 0 428 455 432187370 432187343 1.700000e-02 52.8
127 TraesCS1D01G240500 chr5A 97.605 167 4 0 6830 6996 651496988 651496822 4.200000e-73 287.0
128 TraesCS1D01G240500 chr5A 85.333 75 8 1 430 504 662944793 662944722 3.560000e-09 75.0
129 TraesCS1D01G240500 chr4A 97.059 170 5 0 6828 6997 362067907 362068076 4.200000e-73 287.0
130 TraesCS1D01G240500 chr4A 92.453 53 3 1 7302 7353 697899873 697899821 3.560000e-09 75.0
131 TraesCS1D01G240500 chr2D 97.605 167 4 0 6830 6996 516708310 516708476 4.200000e-73 287.0
132 TraesCS1D01G240500 chr2D 77.322 463 64 21 2440 2891 75410430 75409998 1.540000e-57 235.0
133 TraesCS1D01G240500 chr2D 82.328 232 34 6 3471 3697 75410359 75410130 2.620000e-45 195.0
134 TraesCS1D01G240500 chr2D 81.081 111 12 6 3045 3146 75410001 75409891 7.650000e-11 80.5
135 TraesCS1D01G240500 chr2D 100.000 29 0 0 429 457 598951227 598951255 5.000000e-03 54.7
136 TraesCS1D01G240500 chr4D 96.023 176 6 1 6821 6996 75782227 75782053 1.510000e-72 285.0
137 TraesCS1D01G240500 chr4D 94.475 181 10 0 6823 7003 93338033 93338213 7.030000e-71 279.0
138 TraesCS1D01G240500 chr4D 100.000 42 0 0 7302 7343 100358700 100358659 2.750000e-10 78.7
139 TraesCS1D01G240500 chr5B 87.619 210 21 4 6274 6483 556292536 556292740 1.190000e-58 239.0
140 TraesCS1D01G240500 chr5B 86.316 190 21 5 6280 6466 633675024 633674837 1.570000e-47 202.0
141 TraesCS1D01G240500 chr5B 82.353 136 23 1 16 150 671746260 671746395 5.830000e-22 117.0
142 TraesCS1D01G240500 chr5B 95.918 49 1 1 7292 7340 270865604 270865557 2.750000e-10 78.7
143 TraesCS1D01G240500 chr5B 100.000 30 0 0 428 457 523236954 523236983 1.000000e-03 56.5
144 TraesCS1D01G240500 chr4B 88.601 193 14 4 6274 6466 612362203 612362019 2.580000e-55 228.0
145 TraesCS1D01G240500 chr4B 86.082 194 17 6 6274 6466 256471685 256471501 5.630000e-47 200.0
146 TraesCS1D01G240500 chr4B 96.667 120 3 1 6069 6188 211590503 211590621 2.020000e-46 198.0
147 TraesCS1D01G240500 chr4B 83.077 195 30 3 3799 3991 211590306 211590499 3.410000e-39 174.0
148 TraesCS1D01G240500 chr4B 82.266 203 31 4 2841 3042 211590306 211590504 4.410000e-38 171.0
149 TraesCS1D01G240500 chr4B 85.385 130 14 3 16 144 54322299 54322424 7.490000e-26 130.0
150 TraesCS1D01G240500 chr4B 95.745 47 1 1 7303 7348 63755934 63755888 3.560000e-09 75.0
151 TraesCS1D01G240500 chr4B 84.000 75 12 0 13 87 54308835 54308909 1.280000e-08 73.1
152 TraesCS1D01G240500 chr4B 88.333 60 2 4 7283 7341 647623187 647623132 5.960000e-07 67.6
153 TraesCS1D01G240500 chr4B 90.909 44 3 1 430 473 340863322 340863280 3.590000e-04 58.4
154 TraesCS1D01G240500 chr7B 87.629 194 14 5 6274 6466 516266980 516266796 5.590000e-52 217.0
155 TraesCS1D01G240500 chr7B 74.468 329 69 10 7668 7990 88576197 88575878 2.690000e-25 128.0
156 TraesCS1D01G240500 chr7B 87.013 77 8 2 13 87 7567028 7567104 1.640000e-12 86.1
157 TraesCS1D01G240500 chr7B 95.918 49 1 1 7302 7349 654925807 654925759 2.750000e-10 78.7
158 TraesCS1D01G240500 chr2B 86.559 186 22 3 6281 6466 11344158 11343976 1.570000e-47 202.0
159 TraesCS1D01G240500 chr6B 84.409 186 19 6 4708 4891 51986873 51987050 3.410000e-39 174.0
160 TraesCS1D01G240500 chr6B 84.358 179 18 6 4708 4884 51963729 51963899 5.710000e-37 167.0
161 TraesCS1D01G240500 chr6B 81.651 109 19 1 40 148 694428602 694428495 1.270000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G240500 chr1D 330532769 330541962 9193 True 16979.000000 16979 100.000000 1 9194 1 chr1D.!!$R4 9193
1 TraesCS1D01G240500 chr1D 330535692 330539523 3831 True 881.777778 1709 81.309778 2440 6271 9 chr1D.!!$R6 3831
2 TraesCS1D01G240500 chr1A 427519937 427527932 7995 True 1923.875000 9051 92.025375 846 9153 8 chr1A.!!$R4 8307
3 TraesCS1D01G240500 chr1A 427810175 427810927 752 True 926.000000 926 89.239000 18 759 1 chr1A.!!$R3 741
4 TraesCS1D01G240500 chr1A 427522485 427528408 5923 True 780.250000 1642 82.171875 422 6271 8 chr1A.!!$R5 5849
5 TraesCS1D01G240500 chr1B 445192520 445200925 8405 True 1379.457143 4972 89.751857 573 8752 14 chr1B.!!$R4 8179
6 TraesCS1D01G240500 chr1B 445425916 445426476 560 True 741.000000 741 90.973000 13 560 1 chr1B.!!$R1 547
7 TraesCS1D01G240500 chr1B 445184451 445184998 547 True 306.000000 429 92.831000 8739 9152 2 chr1B.!!$R3 413
8 TraesCS1D01G240500 chr6D 220271013 220272205 1192 False 797.500000 1879 82.592250 2447 6188 4 chr6D.!!$F6 3741
9 TraesCS1D01G240500 chr7D 205656585 205657555 970 False 923.000000 1650 85.837333 2440 6030 3 chr7D.!!$F3 3590
10 TraesCS1D01G240500 chr3B 418646953 418647722 769 False 721.000000 743 84.089000 3691 5449 2 chr3B.!!$F2 1758
11 TraesCS1D01G240500 chr3A 432016291 432017048 757 False 612.666667 723 81.821333 2738 5445 3 chr3A.!!$F2 2707
12 TraesCS1D01G240500 chr3D 302872128 302872746 618 True 394.000000 518 79.335000 2887 5448 2 chr3D.!!$R4 2561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 218 0.034896 TTGGACGGCTCAGAAGGAAC 59.965 55.000 0.00 0.0 0.00 3.62 F
218 220 0.034896 GGACGGCTCAGAAGGAACAA 59.965 55.000 0.00 0.0 0.00 2.83 F
369 371 0.036671 CCGGAACCACCAGACCTTAC 60.037 60.000 0.00 0.0 38.90 2.34 F
679 685 0.110104 ATGCTCCTTCATAGCCCAGC 59.890 55.000 0.00 0.0 39.30 4.85 F
1499 1577 0.530288 GAGGCTCGTGCTCTTCTTCT 59.470 55.000 9.61 0.0 39.59 2.85 F
1853 1931 1.732259 CGAATCCTTTCCGTGGAAGTG 59.268 52.381 1.01 0.0 37.13 3.16 F
1869 1947 5.048083 GTGGAAGTGATTTATGTTGGCAAGA 60.048 40.000 0.00 0.0 0.00 3.02 F
2430 2534 5.817816 CAGGAGGAACGTAATTTCTAGCAAT 59.182 40.000 0.00 0.0 0.00 3.56 F
6845 7325 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1559 0.972883 AAGAAGAAGAGCACGAGCCT 59.027 50.000 0.00 0.0 43.56 4.58 R
1869 1947 3.541242 TTTTCCCCAATGAGATGGTGT 57.459 42.857 0.00 0.0 38.91 4.16 R
2266 2357 3.697542 CCTTGTGGCAATCATCTTGATCA 59.302 43.478 0.00 0.0 35.76 2.92 R
2437 2541 8.778358 GCAACTTGATAAACTAAGCAGCTATAT 58.222 33.333 0.00 0.0 0.00 0.86 R
6278 6700 1.003928 GGGACCAATAAACCAGGACGT 59.996 52.381 0.00 0.0 0.00 4.34 R
6617 7097 2.267426 TCACGAATACACTGGCAATCG 58.733 47.619 0.00 0.0 36.45 3.34 R
6833 7313 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.0 0.00 4.30 R
6930 7410 2.384828 AGACTGCCACATACGGATGTA 58.615 47.619 14.23 0.0 44.82 2.29 R
8792 9382 0.248621 GCCCTATGTTTGCGATGCAC 60.249 55.000 0.00 0.0 38.71 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 6.460781 GGTATTTAACTTTCCCAAACCCTTG 58.539 40.000 0.00 0.00 0.00 3.61
152 154 1.306148 CATTGCCATGTCGAGCTGAT 58.694 50.000 0.00 0.00 0.00 2.90
168 170 3.933031 GCTGATATTTCTGCTTGTGTCG 58.067 45.455 7.60 0.00 41.96 4.35
169 171 3.786818 GCTGATATTTCTGCTTGTGTCGC 60.787 47.826 7.60 0.00 41.96 5.19
170 172 2.677836 TGATATTTCTGCTTGTGTCGCC 59.322 45.455 0.00 0.00 0.00 5.54
171 173 2.472695 TATTTCTGCTTGTGTCGCCT 57.527 45.000 0.00 0.00 0.00 5.52
172 174 1.160137 ATTTCTGCTTGTGTCGCCTC 58.840 50.000 0.00 0.00 0.00 4.70
173 175 0.106708 TTTCTGCTTGTGTCGCCTCT 59.893 50.000 0.00 0.00 0.00 3.69
174 176 0.601046 TTCTGCTTGTGTCGCCTCTG 60.601 55.000 0.00 0.00 0.00 3.35
175 177 1.301244 CTGCTTGTGTCGCCTCTGT 60.301 57.895 0.00 0.00 0.00 3.41
176 178 1.563435 CTGCTTGTGTCGCCTCTGTG 61.563 60.000 0.00 0.00 0.00 3.66
177 179 1.300931 GCTTGTGTCGCCTCTGTGA 60.301 57.895 0.00 0.00 0.00 3.58
182 184 4.504132 GTCGCCTCTGTGACCATC 57.496 61.111 0.00 0.00 44.50 3.51
183 185 1.591703 GTCGCCTCTGTGACCATCA 59.408 57.895 0.00 0.00 44.50 3.07
184 186 0.459237 GTCGCCTCTGTGACCATCAG 60.459 60.000 0.00 0.00 44.50 2.90
185 187 0.611896 TCGCCTCTGTGACCATCAGA 60.612 55.000 0.00 0.00 39.25 3.27
186 188 0.459237 CGCCTCTGTGACCATCAGAC 60.459 60.000 0.00 0.00 37.07 3.51
187 189 0.107945 GCCTCTGTGACCATCAGACC 60.108 60.000 0.00 0.00 37.07 3.85
188 190 1.566211 CCTCTGTGACCATCAGACCT 58.434 55.000 0.00 0.00 37.07 3.85
189 191 1.206610 CCTCTGTGACCATCAGACCTG 59.793 57.143 0.00 0.00 37.07 4.00
190 192 0.610174 TCTGTGACCATCAGACCTGC 59.390 55.000 0.00 0.00 37.07 4.85
191 193 0.612229 CTGTGACCATCAGACCTGCT 59.388 55.000 0.00 0.00 35.20 4.24
192 194 1.002888 CTGTGACCATCAGACCTGCTT 59.997 52.381 0.00 0.00 35.20 3.91
193 195 1.421268 TGTGACCATCAGACCTGCTTT 59.579 47.619 0.00 0.00 0.00 3.51
194 196 2.158623 TGTGACCATCAGACCTGCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
195 197 2.227388 GTGACCATCAGACCTGCTTTTG 59.773 50.000 0.00 0.00 0.00 2.44
196 198 2.106338 TGACCATCAGACCTGCTTTTGA 59.894 45.455 0.00 0.00 0.00 2.69
197 199 3.245016 TGACCATCAGACCTGCTTTTGAT 60.245 43.478 0.00 0.00 0.00 2.57
198 200 3.760684 GACCATCAGACCTGCTTTTGATT 59.239 43.478 0.00 0.00 0.00 2.57
199 201 3.508793 ACCATCAGACCTGCTTTTGATTG 59.491 43.478 0.00 0.00 0.00 2.67
200 202 3.119245 CCATCAGACCTGCTTTTGATTGG 60.119 47.826 0.00 0.00 0.00 3.16
201 203 3.507162 TCAGACCTGCTTTTGATTGGA 57.493 42.857 0.00 0.00 0.00 3.53
202 204 3.149196 TCAGACCTGCTTTTGATTGGAC 58.851 45.455 0.00 0.00 0.00 4.02
203 205 2.095567 CAGACCTGCTTTTGATTGGACG 60.096 50.000 0.00 0.00 0.00 4.79
204 206 1.200020 GACCTGCTTTTGATTGGACGG 59.800 52.381 0.00 0.00 0.00 4.79
205 207 0.109132 CCTGCTTTTGATTGGACGGC 60.109 55.000 0.00 0.00 0.00 5.68
206 208 0.883833 CTGCTTTTGATTGGACGGCT 59.116 50.000 0.00 0.00 0.00 5.52
207 209 0.881118 TGCTTTTGATTGGACGGCTC 59.119 50.000 0.00 0.00 0.00 4.70
208 210 0.881118 GCTTTTGATTGGACGGCTCA 59.119 50.000 0.00 0.00 0.00 4.26
209 211 1.135575 GCTTTTGATTGGACGGCTCAG 60.136 52.381 0.00 0.00 0.00 3.35
210 212 2.426522 CTTTTGATTGGACGGCTCAGA 58.573 47.619 0.00 0.00 0.00 3.27
211 213 2.559698 TTTGATTGGACGGCTCAGAA 57.440 45.000 0.00 0.00 0.00 3.02
212 214 2.099141 TTGATTGGACGGCTCAGAAG 57.901 50.000 0.00 0.00 0.00 2.85
213 215 0.250234 TGATTGGACGGCTCAGAAGG 59.750 55.000 0.00 0.00 0.00 3.46
214 216 0.537188 GATTGGACGGCTCAGAAGGA 59.463 55.000 0.00 0.00 0.00 3.36
215 217 0.984230 ATTGGACGGCTCAGAAGGAA 59.016 50.000 0.00 0.00 0.00 3.36
216 218 0.034896 TTGGACGGCTCAGAAGGAAC 59.965 55.000 0.00 0.00 0.00 3.62
217 219 1.118965 TGGACGGCTCAGAAGGAACA 61.119 55.000 0.00 0.00 0.00 3.18
218 220 0.034896 GGACGGCTCAGAAGGAACAA 59.965 55.000 0.00 0.00 0.00 2.83
219 221 1.149148 GACGGCTCAGAAGGAACAAC 58.851 55.000 0.00 0.00 0.00 3.32
220 222 0.759346 ACGGCTCAGAAGGAACAACT 59.241 50.000 0.00 0.00 0.00 3.16
221 223 1.141053 ACGGCTCAGAAGGAACAACTT 59.859 47.619 0.00 0.00 0.00 2.66
222 224 2.222027 CGGCTCAGAAGGAACAACTTT 58.778 47.619 0.00 0.00 0.00 2.66
223 225 2.618709 CGGCTCAGAAGGAACAACTTTT 59.381 45.455 0.00 0.00 0.00 2.27
224 226 3.066760 CGGCTCAGAAGGAACAACTTTTT 59.933 43.478 0.00 0.00 0.00 1.94
243 245 5.964887 TTTTTCCTCTTTTTGCATTGACG 57.035 34.783 0.00 0.00 0.00 4.35
244 246 4.647424 TTTCCTCTTTTTGCATTGACGT 57.353 36.364 0.00 0.00 0.00 4.34
245 247 3.624326 TCCTCTTTTTGCATTGACGTG 57.376 42.857 0.00 0.00 0.00 4.49
246 248 2.293122 TCCTCTTTTTGCATTGACGTGG 59.707 45.455 0.00 0.00 0.00 4.94
247 249 2.293122 CCTCTTTTTGCATTGACGTGGA 59.707 45.455 0.00 0.00 0.00 4.02
248 250 3.300009 CTCTTTTTGCATTGACGTGGAC 58.700 45.455 0.00 0.00 0.00 4.02
249 251 2.034053 TCTTTTTGCATTGACGTGGACC 59.966 45.455 0.00 0.00 0.00 4.46
250 252 1.393603 TTTTGCATTGACGTGGACCA 58.606 45.000 0.00 0.00 0.00 4.02
251 253 0.950836 TTTGCATTGACGTGGACCAG 59.049 50.000 0.00 0.00 0.00 4.00
252 254 0.179032 TTGCATTGACGTGGACCAGT 60.179 50.000 0.00 0.00 0.00 4.00
253 255 0.179032 TGCATTGACGTGGACCAGTT 60.179 50.000 0.00 0.00 0.00 3.16
254 256 0.951558 GCATTGACGTGGACCAGTTT 59.048 50.000 0.00 0.00 0.00 2.66
255 257 1.334960 GCATTGACGTGGACCAGTTTG 60.335 52.381 0.00 0.00 0.00 2.93
256 258 2.217750 CATTGACGTGGACCAGTTTGA 58.782 47.619 0.00 0.00 0.00 2.69
257 259 2.631160 TTGACGTGGACCAGTTTGAT 57.369 45.000 0.00 0.00 0.00 2.57
258 260 2.631160 TGACGTGGACCAGTTTGATT 57.369 45.000 0.00 0.00 0.00 2.57
259 261 2.925724 TGACGTGGACCAGTTTGATTT 58.074 42.857 0.00 0.00 0.00 2.17
260 262 4.074627 TGACGTGGACCAGTTTGATTTA 57.925 40.909 0.00 0.00 0.00 1.40
261 263 4.452825 TGACGTGGACCAGTTTGATTTAA 58.547 39.130 0.00 0.00 0.00 1.52
262 264 4.513692 TGACGTGGACCAGTTTGATTTAAG 59.486 41.667 0.00 0.00 0.00 1.85
263 265 4.710324 ACGTGGACCAGTTTGATTTAAGA 58.290 39.130 0.00 0.00 0.00 2.10
264 266 5.127491 ACGTGGACCAGTTTGATTTAAGAA 58.873 37.500 0.00 0.00 0.00 2.52
265 267 5.591067 ACGTGGACCAGTTTGATTTAAGAAA 59.409 36.000 0.00 0.00 0.00 2.52
266 268 6.095720 ACGTGGACCAGTTTGATTTAAGAAAA 59.904 34.615 0.00 0.00 0.00 2.29
267 269 6.975772 CGTGGACCAGTTTGATTTAAGAAAAA 59.024 34.615 0.00 0.00 0.00 1.94
289 291 5.669164 AAAACACCCTAAAAGAAACTGCA 57.331 34.783 0.00 0.00 0.00 4.41
290 292 5.669164 AAACACCCTAAAAGAAACTGCAA 57.331 34.783 0.00 0.00 0.00 4.08
291 293 5.669164 AACACCCTAAAAGAAACTGCAAA 57.331 34.783 0.00 0.00 0.00 3.68
292 294 5.669164 ACACCCTAAAAGAAACTGCAAAA 57.331 34.783 0.00 0.00 0.00 2.44
293 295 5.416083 ACACCCTAAAAGAAACTGCAAAAC 58.584 37.500 0.00 0.00 0.00 2.43
294 296 4.808895 CACCCTAAAAGAAACTGCAAAACC 59.191 41.667 0.00 0.00 0.00 3.27
295 297 4.048504 CCCTAAAAGAAACTGCAAAACCG 58.951 43.478 0.00 0.00 0.00 4.44
296 298 4.202070 CCCTAAAAGAAACTGCAAAACCGA 60.202 41.667 0.00 0.00 0.00 4.69
297 299 5.344884 CCTAAAAGAAACTGCAAAACCGAA 58.655 37.500 0.00 0.00 0.00 4.30
298 300 5.231357 CCTAAAAGAAACTGCAAAACCGAAC 59.769 40.000 0.00 0.00 0.00 3.95
299 301 3.859411 AAGAAACTGCAAAACCGAACA 57.141 38.095 0.00 0.00 0.00 3.18
300 302 3.859411 AGAAACTGCAAAACCGAACAA 57.141 38.095 0.00 0.00 0.00 2.83
301 303 4.385358 AGAAACTGCAAAACCGAACAAT 57.615 36.364 0.00 0.00 0.00 2.71
302 304 5.508200 AGAAACTGCAAAACCGAACAATA 57.492 34.783 0.00 0.00 0.00 1.90
303 305 6.084326 AGAAACTGCAAAACCGAACAATAT 57.916 33.333 0.00 0.00 0.00 1.28
304 306 7.209471 AGAAACTGCAAAACCGAACAATATA 57.791 32.000 0.00 0.00 0.00 0.86
305 307 7.653647 AGAAACTGCAAAACCGAACAATATAA 58.346 30.769 0.00 0.00 0.00 0.98
306 308 7.593644 AGAAACTGCAAAACCGAACAATATAAC 59.406 33.333 0.00 0.00 0.00 1.89
307 309 6.320494 ACTGCAAAACCGAACAATATAACA 57.680 33.333 0.00 0.00 0.00 2.41
308 310 6.919721 ACTGCAAAACCGAACAATATAACAT 58.080 32.000 0.00 0.00 0.00 2.71
309 311 7.375053 ACTGCAAAACCGAACAATATAACATT 58.625 30.769 0.00 0.00 0.00 2.71
310 312 7.870445 ACTGCAAAACCGAACAATATAACATTT 59.130 29.630 0.00 0.00 0.00 2.32
311 313 8.012151 TGCAAAACCGAACAATATAACATTTG 57.988 30.769 0.00 0.00 0.00 2.32
312 314 6.953189 GCAAAACCGAACAATATAACATTTGC 59.047 34.615 0.00 0.00 41.10 3.68
313 315 7.359598 GCAAAACCGAACAATATAACATTTGCA 60.360 33.333 0.00 0.00 44.83 4.08
314 316 7.810766 AAACCGAACAATATAACATTTGCAG 57.189 32.000 0.00 0.00 0.00 4.41
315 317 6.509418 ACCGAACAATATAACATTTGCAGT 57.491 33.333 0.00 0.00 0.00 4.40
316 318 6.919721 ACCGAACAATATAACATTTGCAGTT 58.080 32.000 0.00 0.00 0.00 3.16
317 319 6.806249 ACCGAACAATATAACATTTGCAGTTG 59.194 34.615 0.35 0.00 0.00 3.16
318 320 6.237542 CCGAACAATATAACATTTGCAGTTGC 60.238 38.462 0.00 0.00 42.50 4.17
351 353 9.914131 ATAACTTTACATTTTCTTTTCAGCTCC 57.086 29.630 0.00 0.00 0.00 4.70
352 354 6.438763 ACTTTACATTTTCTTTTCAGCTCCG 58.561 36.000 0.00 0.00 0.00 4.63
353 355 3.923017 ACATTTTCTTTTCAGCTCCGG 57.077 42.857 0.00 0.00 0.00 5.14
354 356 3.486383 ACATTTTCTTTTCAGCTCCGGA 58.514 40.909 2.93 2.93 0.00 5.14
355 357 3.888930 ACATTTTCTTTTCAGCTCCGGAA 59.111 39.130 5.23 0.00 0.00 4.30
356 358 3.982576 TTTTCTTTTCAGCTCCGGAAC 57.017 42.857 5.23 0.00 0.00 3.62
357 359 1.892209 TTCTTTTCAGCTCCGGAACC 58.108 50.000 5.23 0.00 0.00 3.62
358 360 0.762418 TCTTTTCAGCTCCGGAACCA 59.238 50.000 5.23 0.00 0.00 3.67
359 361 0.875059 CTTTTCAGCTCCGGAACCAC 59.125 55.000 5.23 0.00 0.00 4.16
360 362 0.536460 TTTTCAGCTCCGGAACCACC 60.536 55.000 5.23 0.00 0.00 4.61
361 363 1.701031 TTTCAGCTCCGGAACCACCA 61.701 55.000 5.23 0.00 38.90 4.17
362 364 2.046892 CAGCTCCGGAACCACCAG 60.047 66.667 5.23 0.00 38.90 4.00
363 365 2.203788 AGCTCCGGAACCACCAGA 60.204 61.111 5.23 0.00 38.90 3.86
364 366 2.047179 GCTCCGGAACCACCAGAC 60.047 66.667 5.23 0.00 38.90 3.51
365 367 2.663196 CTCCGGAACCACCAGACC 59.337 66.667 5.23 0.00 38.90 3.85
366 368 1.913762 CTCCGGAACCACCAGACCT 60.914 63.158 5.23 0.00 38.90 3.85
367 369 1.460689 TCCGGAACCACCAGACCTT 60.461 57.895 0.00 0.00 38.90 3.50
368 370 0.178926 TCCGGAACCACCAGACCTTA 60.179 55.000 0.00 0.00 38.90 2.69
369 371 0.036671 CCGGAACCACCAGACCTTAC 60.037 60.000 0.00 0.00 38.90 2.34
370 372 0.974383 CGGAACCACCAGACCTTACT 59.026 55.000 0.00 0.00 38.90 2.24
371 373 1.346722 CGGAACCACCAGACCTTACTT 59.653 52.381 0.00 0.00 38.90 2.24
372 374 2.224450 CGGAACCACCAGACCTTACTTT 60.224 50.000 0.00 0.00 38.90 2.66
373 375 3.409570 GGAACCACCAGACCTTACTTTC 58.590 50.000 0.00 0.00 38.79 2.62
374 376 3.409570 GAACCACCAGACCTTACTTTCC 58.590 50.000 0.00 0.00 0.00 3.13
375 377 1.346722 ACCACCAGACCTTACTTTCCG 59.653 52.381 0.00 0.00 0.00 4.30
376 378 1.338769 CCACCAGACCTTACTTTCCGG 60.339 57.143 0.00 0.00 0.00 5.14
377 379 1.621814 CACCAGACCTTACTTTCCGGA 59.378 52.381 0.00 0.00 0.00 5.14
378 380 2.038033 CACCAGACCTTACTTTCCGGAA 59.962 50.000 14.35 14.35 0.00 4.30
379 381 2.707257 ACCAGACCTTACTTTCCGGAAA 59.293 45.455 27.33 27.33 0.00 3.13
380 382 3.136992 ACCAGACCTTACTTTCCGGAAAA 59.863 43.478 28.62 13.89 0.00 2.29
381 383 4.139038 CCAGACCTTACTTTCCGGAAAAA 58.861 43.478 28.62 19.97 0.00 1.94
382 384 4.023450 CCAGACCTTACTTTCCGGAAAAAC 60.023 45.833 28.62 14.67 0.00 2.43
383 385 4.820173 CAGACCTTACTTTCCGGAAAAACT 59.180 41.667 28.62 16.69 0.00 2.66
384 386 5.298527 CAGACCTTACTTTCCGGAAAAACTT 59.701 40.000 28.62 16.00 0.00 2.66
385 387 5.889853 AGACCTTACTTTCCGGAAAAACTTT 59.110 36.000 28.62 12.73 0.00 2.66
386 388 5.898174 ACCTTACTTTCCGGAAAAACTTTG 58.102 37.500 28.62 18.49 0.00 2.77
387 389 5.163488 ACCTTACTTTCCGGAAAAACTTTGG 60.163 40.000 28.62 24.25 0.00 3.28
388 390 5.068067 CCTTACTTTCCGGAAAAACTTTGGA 59.932 40.000 28.62 11.46 0.00 3.53
389 391 6.406065 CCTTACTTTCCGGAAAAACTTTGGAA 60.406 38.462 28.62 17.73 36.95 3.53
390 392 5.006153 ACTTTCCGGAAAAACTTTGGAAG 57.994 39.130 28.62 15.95 39.66 3.46
391 393 3.446310 TTCCGGAAAAACTTTGGAAGC 57.554 42.857 16.28 0.00 33.95 3.86
392 394 2.379972 TCCGGAAAAACTTTGGAAGCA 58.620 42.857 0.00 0.00 0.00 3.91
393 395 2.761208 TCCGGAAAAACTTTGGAAGCAA 59.239 40.909 0.00 0.00 0.00 3.91
394 396 3.195825 TCCGGAAAAACTTTGGAAGCAAA 59.804 39.130 0.00 0.00 0.00 3.68
395 397 3.935828 CCGGAAAAACTTTGGAAGCAAAA 59.064 39.130 0.00 0.00 0.00 2.44
396 398 4.201773 CCGGAAAAACTTTGGAAGCAAAAC 60.202 41.667 0.00 0.00 0.00 2.43
397 399 4.201773 CGGAAAAACTTTGGAAGCAAAACC 60.202 41.667 0.00 0.00 0.00 3.27
398 400 4.941263 GGAAAAACTTTGGAAGCAAAACCT 59.059 37.500 0.00 0.00 0.00 3.50
399 401 6.110033 GGAAAAACTTTGGAAGCAAAACCTA 58.890 36.000 0.00 0.00 0.00 3.08
400 402 6.765989 GGAAAAACTTTGGAAGCAAAACCTAT 59.234 34.615 0.00 0.00 0.00 2.57
401 403 7.929245 GGAAAAACTTTGGAAGCAAAACCTATA 59.071 33.333 0.00 0.00 0.00 1.31
402 404 9.489084 GAAAAACTTTGGAAGCAAAACCTATAT 57.511 29.630 0.00 0.00 0.00 0.86
403 405 8.831715 AAAACTTTGGAAGCAAAACCTATATG 57.168 30.769 0.00 0.00 0.00 1.78
404 406 7.775053 AACTTTGGAAGCAAAACCTATATGA 57.225 32.000 0.00 0.00 0.00 2.15
405 407 7.775053 ACTTTGGAAGCAAAACCTATATGAA 57.225 32.000 0.00 0.00 0.00 2.57
406 408 7.830739 ACTTTGGAAGCAAAACCTATATGAAG 58.169 34.615 0.00 0.00 0.00 3.02
407 409 7.451566 ACTTTGGAAGCAAAACCTATATGAAGT 59.548 33.333 0.00 0.00 0.00 3.01
408 410 7.775053 TTGGAAGCAAAACCTATATGAAGTT 57.225 32.000 0.00 0.00 0.00 2.66
409 411 7.391148 TGGAAGCAAAACCTATATGAAGTTC 57.609 36.000 0.00 0.00 0.00 3.01
410 412 7.175104 TGGAAGCAAAACCTATATGAAGTTCT 58.825 34.615 4.17 0.00 0.00 3.01
411 413 8.325787 TGGAAGCAAAACCTATATGAAGTTCTA 58.674 33.333 4.17 0.00 0.00 2.10
412 414 9.343539 GGAAGCAAAACCTATATGAAGTTCTAT 57.656 33.333 4.17 2.84 0.00 1.98
415 417 8.624776 AGCAAAACCTATATGAAGTTCTATTGC 58.375 33.333 4.17 0.00 36.05 3.56
416 418 8.624776 GCAAAACCTATATGAAGTTCTATTGCT 58.375 33.333 4.17 0.00 34.37 3.91
436 438 4.574828 TGCTTTTGAGCTCGAAAACTACTT 59.425 37.500 25.65 0.00 35.49 2.24
437 439 5.140872 GCTTTTGAGCTCGAAAACTACTTC 58.859 41.667 25.65 8.86 0.00 3.01
440 442 4.175787 TGAGCTCGAAAACTACTTCCTC 57.824 45.455 9.64 0.00 0.00 3.71
441 443 3.056749 TGAGCTCGAAAACTACTTCCTCC 60.057 47.826 9.64 0.00 0.00 4.30
442 444 2.897969 AGCTCGAAAACTACTTCCTCCA 59.102 45.455 0.00 0.00 0.00 3.86
462 464 3.309682 CCATCCCATAATATAAGCGCGTG 59.690 47.826 8.43 0.00 0.00 5.34
518 520 8.643324 GCTCTTATATTAGGAATATCGGGTCAT 58.357 37.037 0.00 0.00 35.72 3.06
521 523 9.973450 CTTATATTAGGAATATCGGGTCATGAG 57.027 37.037 0.00 0.00 35.72 2.90
651 657 2.040278 AGTCCAGCAAAAGCACATAGGA 59.960 45.455 0.00 0.00 0.00 2.94
671 677 1.561542 ACCCTTTCGATGCTCCTTCAT 59.438 47.619 0.00 0.00 0.00 2.57
673 679 3.181461 ACCCTTTCGATGCTCCTTCATAG 60.181 47.826 0.00 0.00 0.00 2.23
679 685 0.110104 ATGCTCCTTCATAGCCCAGC 59.890 55.000 0.00 0.00 39.30 4.85
1077 1155 4.854784 GAGCTCGTCATGCGCCGA 62.855 66.667 4.18 5.50 41.07 5.54
1113 1191 2.418746 CCTCCACTACCTGAATTCCGTG 60.419 54.545 2.27 3.02 0.00 4.94
1263 1341 2.185350 CATGCGACGCTCCTTCCT 59.815 61.111 22.08 0.00 0.00 3.36
1481 1559 3.953712 TGGTACTTGAAATCTCGCAGA 57.046 42.857 0.00 0.00 0.00 4.26
1499 1577 0.530288 GAGGCTCGTGCTCTTCTTCT 59.470 55.000 9.61 0.00 39.59 2.85
1507 1585 1.742268 GTGCTCTTCTTCTTCATGCCC 59.258 52.381 0.00 0.00 0.00 5.36
1652 1730 3.945921 TGAGCGCTTCAGTGTAGTATAGT 59.054 43.478 13.26 0.00 0.00 2.12
1853 1931 1.732259 CGAATCCTTTCCGTGGAAGTG 59.268 52.381 1.01 0.00 37.13 3.16
1869 1947 5.048083 GTGGAAGTGATTTATGTTGGCAAGA 60.048 40.000 0.00 0.00 0.00 3.02
2078 2169 6.899393 ATTTTACTTCAGATGCAGGTTCAA 57.101 33.333 0.00 0.00 0.00 2.69
2266 2357 9.459640 GTTGTGAACGTATGACTGTACATATAT 57.540 33.333 0.00 0.00 35.61 0.86
2430 2534 5.817816 CAGGAGGAACGTAATTTCTAGCAAT 59.182 40.000 0.00 0.00 0.00 3.56
2437 2541 8.662141 GGAACGTAATTTCTAGCAATTTAGTGA 58.338 33.333 5.66 0.00 0.00 3.41
6835 7315 7.948034 ATAGATGCCTAGTTACCATCTACTC 57.052 40.000 15.74 0.00 45.82 2.59
6836 7316 5.081032 AGATGCCTAGTTACCATCTACTCC 58.919 45.833 9.40 0.00 42.70 3.85
6837 7317 3.573695 TGCCTAGTTACCATCTACTCCC 58.426 50.000 0.00 0.00 0.00 4.30
6838 7318 3.206866 TGCCTAGTTACCATCTACTCCCT 59.793 47.826 0.00 0.00 0.00 4.20
6839 7319 3.827876 GCCTAGTTACCATCTACTCCCTC 59.172 52.174 0.00 0.00 0.00 4.30
6840 7320 4.409187 CCTAGTTACCATCTACTCCCTCC 58.591 52.174 0.00 0.00 0.00 4.30
6841 7321 2.946785 AGTTACCATCTACTCCCTCCG 58.053 52.381 0.00 0.00 0.00 4.63
6842 7322 2.244252 AGTTACCATCTACTCCCTCCGT 59.756 50.000 0.00 0.00 0.00 4.69
6843 7323 3.029570 GTTACCATCTACTCCCTCCGTT 58.970 50.000 0.00 0.00 0.00 4.44
6844 7324 1.777941 ACCATCTACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
6845 7325 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
6846 7326 1.411787 CCATCTACTCCCTCCGTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
6847 7327 2.158505 CCATCTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
6848 7328 3.563223 CATCTACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
6849 7329 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
6850 7330 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
6851 7331 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
6852 7332 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
6853 7333 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
6854 7334 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6855 7335 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6856 7336 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6857 7337 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6858 7338 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6859 7339 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6860 7340 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6861 7341 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6862 7342 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6863 7343 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6864 7344 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6865 7345 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6879 7359 9.787532 TTGTCTTTCTAGAAATTTCAACAAGTG 57.212 29.630 18.02 2.79 30.65 3.16
6880 7360 9.173021 TGTCTTTCTAGAAATTTCAACAAGTGA 57.827 29.630 18.02 5.04 30.65 3.41
6881 7361 9.439537 GTCTTTCTAGAAATTTCAACAAGTGAC 57.560 33.333 18.02 12.64 31.18 3.67
6882 7362 9.396022 TCTTTCTAGAAATTTCAACAAGTGACT 57.604 29.630 18.02 0.00 35.39 3.41
6898 7378 6.017109 ACAAGTGACTACATTCGAAGCAAAAT 60.017 34.615 3.35 0.00 0.00 1.82
6899 7379 5.931532 AGTGACTACATTCGAAGCAAAATG 58.068 37.500 3.35 0.00 38.54 2.32
6900 7380 5.700832 AGTGACTACATTCGAAGCAAAATGA 59.299 36.000 3.35 0.00 36.57 2.57
6901 7381 6.017933 GTGACTACATTCGAAGCAAAATGAG 58.982 40.000 3.35 0.00 36.57 2.90
6903 7383 5.931532 ACTACATTCGAAGCAAAATGAGTG 58.068 37.500 3.35 0.00 36.57 3.51
6904 7384 5.700832 ACTACATTCGAAGCAAAATGAGTGA 59.299 36.000 3.35 0.00 36.57 3.41
6905 7385 5.437289 ACATTCGAAGCAAAATGAGTGAA 57.563 34.783 3.35 0.00 36.57 3.18
6906 7386 6.017400 ACATTCGAAGCAAAATGAGTGAAT 57.983 33.333 3.35 0.00 36.57 2.57
6907 7387 6.088824 ACATTCGAAGCAAAATGAGTGAATC 58.911 36.000 3.35 0.00 36.57 2.52
6908 7388 5.947228 TTCGAAGCAAAATGAGTGAATCT 57.053 34.783 0.00 0.00 0.00 2.40
6909 7389 7.119699 ACATTCGAAGCAAAATGAGTGAATCTA 59.880 33.333 3.35 0.00 36.57 1.98
6910 7390 6.408858 TCGAAGCAAAATGAGTGAATCTAC 57.591 37.500 0.00 0.00 0.00 2.59
6911 7391 5.931724 TCGAAGCAAAATGAGTGAATCTACA 59.068 36.000 0.00 0.00 0.00 2.74
6912 7392 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
6945 7425 6.203808 TGTCTATATACATCCGTATGTGGC 57.796 41.667 3.56 0.00 45.99 5.01
6946 7426 5.712917 TGTCTATATACATCCGTATGTGGCA 59.287 40.000 3.56 0.00 45.99 4.92
6947 7427 6.127730 TGTCTATATACATCCGTATGTGGCAG 60.128 42.308 3.56 0.00 45.99 4.85
6948 7428 5.949952 TCTATATACATCCGTATGTGGCAGT 59.050 40.000 3.56 0.00 45.99 4.40
6949 7429 2.882927 TACATCCGTATGTGGCAGTC 57.117 50.000 3.56 0.00 45.99 3.51
6950 7430 1.195115 ACATCCGTATGTGGCAGTCT 58.805 50.000 0.00 0.00 44.79 3.24
6951 7431 2.384828 ACATCCGTATGTGGCAGTCTA 58.615 47.619 0.00 0.00 44.79 2.59
6952 7432 2.965831 ACATCCGTATGTGGCAGTCTAT 59.034 45.455 0.00 0.00 44.79 1.98
6953 7433 3.388024 ACATCCGTATGTGGCAGTCTATT 59.612 43.478 0.00 0.00 44.79 1.73
6954 7434 4.141711 ACATCCGTATGTGGCAGTCTATTT 60.142 41.667 0.00 0.00 44.79 1.40
6955 7435 3.792401 TCCGTATGTGGCAGTCTATTTG 58.208 45.455 0.00 0.00 0.00 2.32
6956 7436 3.449377 TCCGTATGTGGCAGTCTATTTGA 59.551 43.478 0.00 0.00 0.00 2.69
6957 7437 4.081365 TCCGTATGTGGCAGTCTATTTGAA 60.081 41.667 0.00 0.00 0.00 2.69
6958 7438 4.634004 CCGTATGTGGCAGTCTATTTGAAA 59.366 41.667 0.00 0.00 0.00 2.69
6959 7439 5.296780 CCGTATGTGGCAGTCTATTTGAAAT 59.703 40.000 0.00 0.00 0.00 2.17
6960 7440 6.422223 CGTATGTGGCAGTCTATTTGAAATC 58.578 40.000 0.00 0.00 0.00 2.17
6961 7441 6.258727 CGTATGTGGCAGTCTATTTGAAATCT 59.741 38.462 0.00 0.00 0.00 2.40
6962 7442 6.690194 ATGTGGCAGTCTATTTGAAATCTC 57.310 37.500 0.00 0.00 0.00 2.75
6963 7443 5.809001 TGTGGCAGTCTATTTGAAATCTCT 58.191 37.500 0.00 0.00 0.00 3.10
6964 7444 6.946340 TGTGGCAGTCTATTTGAAATCTCTA 58.054 36.000 0.00 0.00 0.00 2.43
6965 7445 7.394016 TGTGGCAGTCTATTTGAAATCTCTAA 58.606 34.615 0.00 0.00 0.00 2.10
6966 7446 7.882791 TGTGGCAGTCTATTTGAAATCTCTAAA 59.117 33.333 0.00 0.00 0.00 1.85
6967 7447 8.730680 GTGGCAGTCTATTTGAAATCTCTAAAA 58.269 33.333 0.00 0.00 0.00 1.52
6968 7448 9.295825 TGGCAGTCTATTTGAAATCTCTAAAAA 57.704 29.630 0.00 0.00 0.00 1.94
6969 7449 9.780413 GGCAGTCTATTTGAAATCTCTAAAAAG 57.220 33.333 0.00 0.00 0.00 2.27
7069 7549 9.356433 TCAGACATGTTTATTTTGCACATATTG 57.644 29.630 0.00 0.00 29.78 1.90
7155 7635 0.902531 ACACTGGAATACGGGTCCTG 59.097 55.000 0.00 0.00 39.37 3.86
7296 7776 2.688446 TGCCACCTCTATCTTGTACTCG 59.312 50.000 0.00 0.00 0.00 4.18
7299 7779 2.952978 CACCTCTATCTTGTACTCGCCT 59.047 50.000 0.00 0.00 0.00 5.52
7466 7965 6.728200 TGCAGCAATGTTTAGTAATATGCTC 58.272 36.000 0.00 6.09 0.00 4.26
7685 8184 0.383002 GTGCATCAACGTGTGTGTCG 60.383 55.000 0.00 0.00 0.00 4.35
7840 8339 2.644418 GCAGCACGGCACAATTCA 59.356 55.556 0.00 0.00 0.00 2.57
7843 8342 0.522626 CAGCACGGCACAATTCATCA 59.477 50.000 0.00 0.00 0.00 3.07
7854 8353 4.993905 CACAATTCATCAGTGCATCATGT 58.006 39.130 0.00 0.00 0.00 3.21
7875 8374 4.395854 TGTTTTAGTCCGATACTACGCAGA 59.604 41.667 0.00 0.00 40.48 4.26
8206 8705 9.196139 ACTTAGATCAGTGAGCTTAAATACTCT 57.804 33.333 17.38 3.57 33.92 3.24
8242 8741 3.451178 ACAATTCACCGGCTACTCAGTAT 59.549 43.478 0.00 0.00 0.00 2.12
8243 8742 4.647853 ACAATTCACCGGCTACTCAGTATA 59.352 41.667 0.00 0.00 0.00 1.47
8365 8864 4.150627 CGACGTTCTTTCAACATCTCACAT 59.849 41.667 0.00 0.00 0.00 3.21
8366 8865 5.344933 CGACGTTCTTTCAACATCTCACATA 59.655 40.000 0.00 0.00 0.00 2.29
8367 8866 6.467723 ACGTTCTTTCAACATCTCACATAC 57.532 37.500 0.00 0.00 0.00 2.39
8368 8867 5.989168 ACGTTCTTTCAACATCTCACATACA 59.011 36.000 0.00 0.00 0.00 2.29
8369 8868 6.650807 ACGTTCTTTCAACATCTCACATACAT 59.349 34.615 0.00 0.00 0.00 2.29
8374 8873 9.101655 TCTTTCAACATCTCACATACATACATG 57.898 33.333 0.00 0.00 0.00 3.21
8405 8904 5.184096 TGGATAGTGTCTTGTCTGTCTTCTC 59.816 44.000 0.00 0.00 0.00 2.87
8416 8915 1.989165 CTGTCTTCTCGCTGTACTTGC 59.011 52.381 0.00 0.00 0.00 4.01
8424 8924 1.292223 GCTGTACTTGCGACCCAGA 59.708 57.895 0.00 0.00 0.00 3.86
8433 8934 0.752658 TGCGACCCAGATGTGATAGG 59.247 55.000 0.00 0.00 0.00 2.57
8509 9010 4.097741 TGATCTTTGGTGGTTGTTCACTTG 59.902 41.667 0.00 0.00 37.75 3.16
8520 9021 5.105513 TGGTTGTTCACTTGCTCTATCGATA 60.106 40.000 4.78 4.78 0.00 2.92
8557 9058 7.630242 TTCCTACAACATCTTTCATGATTCC 57.370 36.000 0.00 0.00 0.00 3.01
8792 9382 8.674263 AATAGTTGAATCTAGCTTCCTGAATG 57.326 34.615 3.95 0.00 0.00 2.67
8795 9385 4.194640 TGAATCTAGCTTCCTGAATGTGC 58.805 43.478 3.95 0.00 0.00 4.57
8835 9425 5.665916 ATTGTTTTGGATTGCTCCTTAGG 57.334 39.130 0.00 0.00 42.59 2.69
8854 9451 8.265055 TCCTTAGGGTTGTGAGATTAAACTATG 58.735 37.037 0.00 0.00 0.00 2.23
8933 9660 1.000506 GCAAACGTGAGGGTGAGTCTA 59.999 52.381 0.00 0.00 0.00 2.59
8955 9682 4.704833 GGCGCACAAGGAGAGCCA 62.705 66.667 10.83 0.00 46.48 4.75
8959 9686 1.072159 GCACAAGGAGAGCCAGTGT 59.928 57.895 0.00 0.00 41.65 3.55
8960 9687 0.536006 GCACAAGGAGAGCCAGTGTT 60.536 55.000 0.00 0.00 41.65 3.32
8961 9688 1.517242 CACAAGGAGAGCCAGTGTTC 58.483 55.000 0.00 0.00 37.56 3.18
8962 9689 0.034059 ACAAGGAGAGCCAGTGTTCG 59.966 55.000 0.00 0.00 32.54 3.95
8963 9690 0.671781 CAAGGAGAGCCAGTGTTCGG 60.672 60.000 0.00 0.00 36.29 4.30
8964 9691 1.831652 AAGGAGAGCCAGTGTTCGGG 61.832 60.000 0.00 0.00 36.29 5.14
8965 9692 2.266055 GAGAGCCAGTGTTCGGGG 59.734 66.667 0.00 0.00 0.00 5.73
8970 9697 4.722700 CCAGTGTTCGGGGCCAGG 62.723 72.222 4.39 0.00 0.00 4.45
8971 9698 3.636231 CAGTGTTCGGGGCCAGGA 61.636 66.667 4.39 0.00 0.00 3.86
8972 9699 3.637273 AGTGTTCGGGGCCAGGAC 61.637 66.667 8.32 8.32 0.00 3.85
8975 9702 4.754667 GTTCGGGGCCAGGACGAC 62.755 72.222 4.39 0.73 36.24 4.34
8987 9714 2.751166 AGGACGACTGAATTGGTGAG 57.249 50.000 0.00 0.00 0.00 3.51
8988 9715 2.248248 AGGACGACTGAATTGGTGAGA 58.752 47.619 0.00 0.00 0.00 3.27
8989 9716 2.834549 AGGACGACTGAATTGGTGAGAT 59.165 45.455 0.00 0.00 0.00 2.75
8990 9717 2.932614 GGACGACTGAATTGGTGAGATG 59.067 50.000 0.00 0.00 0.00 2.90
8991 9718 2.932614 GACGACTGAATTGGTGAGATGG 59.067 50.000 0.00 0.00 0.00 3.51
8992 9719 2.567169 ACGACTGAATTGGTGAGATGGA 59.433 45.455 0.00 0.00 0.00 3.41
8993 9720 3.198635 ACGACTGAATTGGTGAGATGGAT 59.801 43.478 0.00 0.00 0.00 3.41
8998 9760 4.529897 TGAATTGGTGAGATGGATTCCAG 58.470 43.478 11.78 0.00 36.75 3.86
9034 9837 3.238597 GAGCATCTCTAGTTCATCCCCT 58.761 50.000 0.00 0.00 0.00 4.79
9046 9850 9.496710 TCTAGTTCATCCCCTGTAACTTAATTA 57.503 33.333 0.00 0.00 34.23 1.40
9094 9898 5.621197 TGTGTGGAATTAAACCTTCATCG 57.379 39.130 4.19 0.00 0.00 3.84
9099 9903 7.118680 GTGTGGAATTAAACCTTCATCGTCTAA 59.881 37.037 4.19 0.00 0.00 2.10
9109 9913 5.074115 CCTTCATCGTCTAACCTATCTCCT 58.926 45.833 0.00 0.00 0.00 3.69
9153 9957 9.952030 AAAATTCCTTTCCTTCAAAAGTTTGTA 57.048 25.926 3.82 0.00 39.18 2.41
9154 9958 8.942338 AATTCCTTTCCTTCAAAAGTTTGTAC 57.058 30.769 3.82 0.00 39.18 2.90
9155 9959 6.126568 TCCTTTCCTTCAAAAGTTTGTACG 57.873 37.500 3.82 0.00 39.18 3.67
9156 9960 4.738252 CCTTTCCTTCAAAAGTTTGTACGC 59.262 41.667 3.82 0.00 39.18 4.42
9157 9961 4.966965 TTCCTTCAAAAGTTTGTACGCA 57.033 36.364 3.82 0.00 39.18 5.24
9158 9962 4.966965 TCCTTCAAAAGTTTGTACGCAA 57.033 36.364 3.82 0.00 39.18 4.85
9159 9963 5.312120 TCCTTCAAAAGTTTGTACGCAAA 57.688 34.783 3.82 0.00 41.77 3.68
9160 9964 5.897050 TCCTTCAAAAGTTTGTACGCAAAT 58.103 33.333 3.82 0.00 45.11 2.32
9161 9965 5.974751 TCCTTCAAAAGTTTGTACGCAAATC 59.025 36.000 3.82 0.00 45.11 2.17
9162 9966 5.174943 CCTTCAAAAGTTTGTACGCAAATCC 59.825 40.000 3.82 0.00 45.11 3.01
9163 9967 5.508200 TCAAAAGTTTGTACGCAAATCCT 57.492 34.783 3.82 0.00 45.11 3.24
9164 9968 6.621316 TCAAAAGTTTGTACGCAAATCCTA 57.379 33.333 3.82 0.00 45.11 2.94
9165 9969 6.664515 TCAAAAGTTTGTACGCAAATCCTAG 58.335 36.000 3.82 0.00 45.11 3.02
9166 9970 6.261381 TCAAAAGTTTGTACGCAAATCCTAGT 59.739 34.615 3.82 0.00 45.11 2.57
9167 9971 6.628919 AAAGTTTGTACGCAAATCCTAGTT 57.371 33.333 0.00 0.00 45.11 2.24
9168 9972 5.857822 AGTTTGTACGCAAATCCTAGTTC 57.142 39.130 0.00 0.00 45.11 3.01
9169 9973 4.387862 AGTTTGTACGCAAATCCTAGTTCG 59.612 41.667 0.00 0.00 45.11 3.95
9170 9974 3.853831 TGTACGCAAATCCTAGTTCGA 57.146 42.857 0.00 0.00 0.00 3.71
9171 9975 4.177165 TGTACGCAAATCCTAGTTCGAA 57.823 40.909 0.00 0.00 0.00 3.71
9172 9976 4.751060 TGTACGCAAATCCTAGTTCGAAT 58.249 39.130 0.00 0.00 0.00 3.34
9173 9977 4.565166 TGTACGCAAATCCTAGTTCGAATG 59.435 41.667 0.00 0.00 0.00 2.67
9174 9978 3.596214 ACGCAAATCCTAGTTCGAATGT 58.404 40.909 0.00 0.00 0.00 2.71
9175 9979 3.370978 ACGCAAATCCTAGTTCGAATGTG 59.629 43.478 0.00 1.98 0.00 3.21
9176 9980 3.685058 GCAAATCCTAGTTCGAATGTGC 58.315 45.455 0.00 0.00 0.00 4.57
9177 9981 3.785505 GCAAATCCTAGTTCGAATGTGCG 60.786 47.826 0.00 0.00 0.00 5.34
9178 9982 2.961526 ATCCTAGTTCGAATGTGCGT 57.038 45.000 0.00 0.00 0.00 5.24
9179 9983 2.273370 TCCTAGTTCGAATGTGCGTC 57.727 50.000 0.00 0.00 0.00 5.19
9180 9984 1.135199 TCCTAGTTCGAATGTGCGTCC 60.135 52.381 0.00 0.00 0.00 4.79
9181 9985 1.278238 CTAGTTCGAATGTGCGTCCC 58.722 55.000 0.00 0.00 0.00 4.46
9182 9986 0.892755 TAGTTCGAATGTGCGTCCCT 59.107 50.000 0.00 0.00 0.00 4.20
9183 9987 0.892755 AGTTCGAATGTGCGTCCCTA 59.107 50.000 0.00 0.00 0.00 3.53
9184 9988 1.135083 AGTTCGAATGTGCGTCCCTAG 60.135 52.381 0.00 0.00 0.00 3.02
9185 9989 1.135199 GTTCGAATGTGCGTCCCTAGA 60.135 52.381 0.00 0.00 0.00 2.43
9186 9990 1.399714 TCGAATGTGCGTCCCTAGAT 58.600 50.000 0.00 0.00 0.00 1.98
9187 9991 1.337071 TCGAATGTGCGTCCCTAGATC 59.663 52.381 0.00 0.00 0.00 2.75
9188 9992 1.338337 CGAATGTGCGTCCCTAGATCT 59.662 52.381 0.00 0.00 0.00 2.75
9189 9993 2.223829 CGAATGTGCGTCCCTAGATCTT 60.224 50.000 0.00 0.00 0.00 2.40
9190 9994 2.898729 ATGTGCGTCCCTAGATCTTG 57.101 50.000 0.00 0.00 0.00 3.02
9191 9995 0.824109 TGTGCGTCCCTAGATCTTGG 59.176 55.000 15.54 15.54 0.00 3.61
9192 9996 0.530870 GTGCGTCCCTAGATCTTGGC 60.531 60.000 16.88 6.89 0.00 4.52
9193 9997 0.687757 TGCGTCCCTAGATCTTGGCT 60.688 55.000 16.88 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.616891 AACAGGTAAGCCGGGTAAGG 59.383 55.000 6.57 0.00 40.50 2.69
13 14 1.677820 CCAACAGGTAAGCCGGGTAAG 60.678 57.143 6.57 0.00 40.50 2.34
14 15 0.325602 CCAACAGGTAAGCCGGGTAA 59.674 55.000 6.57 0.00 40.50 2.85
15 16 1.555477 CCCAACAGGTAAGCCGGGTA 61.555 60.000 6.57 0.00 40.50 3.69
16 17 2.754375 CCAACAGGTAAGCCGGGT 59.246 61.111 0.00 0.00 40.50 5.28
100 102 1.400500 CCGCAATGTTGACGGGTAAAC 60.400 52.381 15.84 0.00 41.12 2.01
152 154 2.028112 AGAGGCGACACAAGCAGAAATA 60.028 45.455 0.00 0.00 36.08 1.40
161 163 1.069090 GGTCACAGAGGCGACACAA 59.931 57.895 0.00 0.00 33.66 3.33
162 164 1.471829 ATGGTCACAGAGGCGACACA 61.472 55.000 0.00 0.00 33.66 3.72
163 165 0.737715 GATGGTCACAGAGGCGACAC 60.738 60.000 0.00 0.00 33.66 3.67
164 166 1.184970 TGATGGTCACAGAGGCGACA 61.185 55.000 0.00 0.00 33.66 4.35
165 167 0.459237 CTGATGGTCACAGAGGCGAC 60.459 60.000 0.00 0.00 37.54 5.19
166 168 0.611896 TCTGATGGTCACAGAGGCGA 60.612 55.000 0.00 0.00 39.10 5.54
167 169 0.459237 GTCTGATGGTCACAGAGGCG 60.459 60.000 0.00 0.00 43.58 5.52
168 170 0.107945 GGTCTGATGGTCACAGAGGC 60.108 60.000 0.00 0.00 43.58 4.70
169 171 1.206610 CAGGTCTGATGGTCACAGAGG 59.793 57.143 0.00 0.00 43.58 3.69
170 172 1.405256 GCAGGTCTGATGGTCACAGAG 60.405 57.143 1.65 0.00 43.58 3.35
171 173 0.610174 GCAGGTCTGATGGTCACAGA 59.390 55.000 1.65 0.00 41.26 3.41
172 174 0.612229 AGCAGGTCTGATGGTCACAG 59.388 55.000 1.65 0.00 36.80 3.66
173 175 1.059098 AAGCAGGTCTGATGGTCACA 58.941 50.000 1.65 0.00 0.00 3.58
174 176 2.191128 AAAGCAGGTCTGATGGTCAC 57.809 50.000 1.65 0.00 0.00 3.67
175 177 2.106338 TCAAAAGCAGGTCTGATGGTCA 59.894 45.455 1.65 0.00 0.00 4.02
176 178 2.783135 TCAAAAGCAGGTCTGATGGTC 58.217 47.619 1.65 0.00 0.00 4.02
177 179 2.957402 TCAAAAGCAGGTCTGATGGT 57.043 45.000 1.65 0.00 0.00 3.55
178 180 3.119245 CCAATCAAAAGCAGGTCTGATGG 60.119 47.826 1.65 0.00 0.00 3.51
179 181 3.760151 TCCAATCAAAAGCAGGTCTGATG 59.240 43.478 1.65 0.00 0.00 3.07
180 182 3.760684 GTCCAATCAAAAGCAGGTCTGAT 59.239 43.478 1.65 0.00 0.00 2.90
181 183 3.149196 GTCCAATCAAAAGCAGGTCTGA 58.851 45.455 1.65 0.00 0.00 3.27
182 184 2.095567 CGTCCAATCAAAAGCAGGTCTG 60.096 50.000 0.00 0.00 0.00 3.51
183 185 2.154462 CGTCCAATCAAAAGCAGGTCT 58.846 47.619 0.00 0.00 0.00 3.85
184 186 1.200020 CCGTCCAATCAAAAGCAGGTC 59.800 52.381 0.00 0.00 0.00 3.85
185 187 1.247567 CCGTCCAATCAAAAGCAGGT 58.752 50.000 0.00 0.00 0.00 4.00
186 188 0.109132 GCCGTCCAATCAAAAGCAGG 60.109 55.000 0.00 0.00 0.00 4.85
187 189 0.883833 AGCCGTCCAATCAAAAGCAG 59.116 50.000 0.00 0.00 0.00 4.24
188 190 0.881118 GAGCCGTCCAATCAAAAGCA 59.119 50.000 0.00 0.00 0.00 3.91
189 191 0.881118 TGAGCCGTCCAATCAAAAGC 59.119 50.000 0.00 0.00 0.00 3.51
190 192 2.426522 TCTGAGCCGTCCAATCAAAAG 58.573 47.619 0.00 0.00 0.00 2.27
191 193 2.559698 TCTGAGCCGTCCAATCAAAA 57.440 45.000 0.00 0.00 0.00 2.44
192 194 2.426522 CTTCTGAGCCGTCCAATCAAA 58.573 47.619 0.00 0.00 0.00 2.69
193 195 1.339055 CCTTCTGAGCCGTCCAATCAA 60.339 52.381 0.00 0.00 0.00 2.57
194 196 0.250234 CCTTCTGAGCCGTCCAATCA 59.750 55.000 0.00 0.00 0.00 2.57
195 197 0.537188 TCCTTCTGAGCCGTCCAATC 59.463 55.000 0.00 0.00 0.00 2.67
196 198 0.984230 TTCCTTCTGAGCCGTCCAAT 59.016 50.000 0.00 0.00 0.00 3.16
197 199 0.034896 GTTCCTTCTGAGCCGTCCAA 59.965 55.000 0.00 0.00 0.00 3.53
198 200 1.118965 TGTTCCTTCTGAGCCGTCCA 61.119 55.000 0.00 0.00 0.00 4.02
199 201 0.034896 TTGTTCCTTCTGAGCCGTCC 59.965 55.000 0.00 0.00 0.00 4.79
200 202 1.149148 GTTGTTCCTTCTGAGCCGTC 58.851 55.000 0.00 0.00 0.00 4.79
201 203 0.759346 AGTTGTTCCTTCTGAGCCGT 59.241 50.000 0.00 0.00 0.00 5.68
202 204 1.884235 AAGTTGTTCCTTCTGAGCCG 58.116 50.000 0.00 0.00 0.00 5.52
203 205 4.655762 AAAAAGTTGTTCCTTCTGAGCC 57.344 40.909 0.00 0.00 0.00 4.70
221 223 5.290643 CACGTCAATGCAAAAAGAGGAAAAA 59.709 36.000 0.00 0.00 0.00 1.94
222 224 4.803088 CACGTCAATGCAAAAAGAGGAAAA 59.197 37.500 0.00 0.00 0.00 2.29
223 225 4.358851 CACGTCAATGCAAAAAGAGGAAA 58.641 39.130 0.00 0.00 0.00 3.13
224 226 3.243367 CCACGTCAATGCAAAAAGAGGAA 60.243 43.478 0.00 0.00 0.00 3.36
225 227 2.293122 CCACGTCAATGCAAAAAGAGGA 59.707 45.455 0.00 0.00 0.00 3.71
226 228 2.293122 TCCACGTCAATGCAAAAAGAGG 59.707 45.455 0.00 0.00 0.00 3.69
227 229 3.300009 GTCCACGTCAATGCAAAAAGAG 58.700 45.455 0.00 0.00 0.00 2.85
228 230 2.034053 GGTCCACGTCAATGCAAAAAGA 59.966 45.455 0.00 0.00 0.00 2.52
229 231 2.223688 TGGTCCACGTCAATGCAAAAAG 60.224 45.455 0.00 0.00 0.00 2.27
230 232 1.751351 TGGTCCACGTCAATGCAAAAA 59.249 42.857 0.00 0.00 0.00 1.94
231 233 1.336440 CTGGTCCACGTCAATGCAAAA 59.664 47.619 0.00 0.00 0.00 2.44
232 234 0.950836 CTGGTCCACGTCAATGCAAA 59.049 50.000 0.00 0.00 0.00 3.68
233 235 0.179032 ACTGGTCCACGTCAATGCAA 60.179 50.000 0.00 0.00 0.00 4.08
234 236 0.179032 AACTGGTCCACGTCAATGCA 60.179 50.000 0.00 0.00 0.00 3.96
235 237 0.951558 AAACTGGTCCACGTCAATGC 59.048 50.000 0.00 0.00 0.00 3.56
236 238 2.217750 TCAAACTGGTCCACGTCAATG 58.782 47.619 0.00 0.00 0.00 2.82
237 239 2.631160 TCAAACTGGTCCACGTCAAT 57.369 45.000 0.00 0.00 0.00 2.57
238 240 2.631160 ATCAAACTGGTCCACGTCAA 57.369 45.000 0.00 0.00 0.00 3.18
239 241 2.631160 AATCAAACTGGTCCACGTCA 57.369 45.000 0.00 0.00 0.00 4.35
240 242 4.753107 TCTTAAATCAAACTGGTCCACGTC 59.247 41.667 0.00 0.00 0.00 4.34
241 243 4.710324 TCTTAAATCAAACTGGTCCACGT 58.290 39.130 0.00 0.00 0.00 4.49
242 244 5.682943 TTCTTAAATCAAACTGGTCCACG 57.317 39.130 0.00 0.00 0.00 4.94
266 268 6.043854 TGCAGTTTCTTTTAGGGTGTTTTT 57.956 33.333 0.00 0.00 0.00 1.94
267 269 5.669164 TGCAGTTTCTTTTAGGGTGTTTT 57.331 34.783 0.00 0.00 0.00 2.43
268 270 5.669164 TTGCAGTTTCTTTTAGGGTGTTT 57.331 34.783 0.00 0.00 0.00 2.83
269 271 5.669164 TTTGCAGTTTCTTTTAGGGTGTT 57.331 34.783 0.00 0.00 0.00 3.32
270 272 5.416083 GTTTTGCAGTTTCTTTTAGGGTGT 58.584 37.500 0.00 0.00 0.00 4.16
271 273 4.808895 GGTTTTGCAGTTTCTTTTAGGGTG 59.191 41.667 0.00 0.00 0.00 4.61
272 274 4.440940 CGGTTTTGCAGTTTCTTTTAGGGT 60.441 41.667 0.00 0.00 0.00 4.34
273 275 4.048504 CGGTTTTGCAGTTTCTTTTAGGG 58.951 43.478 0.00 0.00 0.00 3.53
274 276 4.927422 TCGGTTTTGCAGTTTCTTTTAGG 58.073 39.130 0.00 0.00 0.00 2.69
275 277 5.802956 TGTTCGGTTTTGCAGTTTCTTTTAG 59.197 36.000 0.00 0.00 0.00 1.85
276 278 5.710984 TGTTCGGTTTTGCAGTTTCTTTTA 58.289 33.333 0.00 0.00 0.00 1.52
277 279 4.561105 TGTTCGGTTTTGCAGTTTCTTTT 58.439 34.783 0.00 0.00 0.00 2.27
278 280 4.181309 TGTTCGGTTTTGCAGTTTCTTT 57.819 36.364 0.00 0.00 0.00 2.52
279 281 3.859411 TGTTCGGTTTTGCAGTTTCTT 57.141 38.095 0.00 0.00 0.00 2.52
280 282 3.859411 TTGTTCGGTTTTGCAGTTTCT 57.141 38.095 0.00 0.00 0.00 2.52
281 283 7.380065 TGTTATATTGTTCGGTTTTGCAGTTTC 59.620 33.333 0.00 0.00 0.00 2.78
282 284 7.203910 TGTTATATTGTTCGGTTTTGCAGTTT 58.796 30.769 0.00 0.00 0.00 2.66
283 285 6.740110 TGTTATATTGTTCGGTTTTGCAGTT 58.260 32.000 0.00 0.00 0.00 3.16
284 286 6.320494 TGTTATATTGTTCGGTTTTGCAGT 57.680 33.333 0.00 0.00 0.00 4.40
285 287 7.810766 AATGTTATATTGTTCGGTTTTGCAG 57.189 32.000 0.00 0.00 0.00 4.41
286 288 7.359598 GCAAATGTTATATTGTTCGGTTTTGCA 60.360 33.333 0.00 0.00 42.70 4.08
287 289 6.953189 GCAAATGTTATATTGTTCGGTTTTGC 59.047 34.615 0.00 0.00 38.61 3.68
288 290 8.012151 TGCAAATGTTATATTGTTCGGTTTTG 57.988 30.769 0.00 0.00 0.00 2.44
289 291 7.870445 ACTGCAAATGTTATATTGTTCGGTTTT 59.130 29.630 0.00 0.00 0.00 2.43
290 292 7.375053 ACTGCAAATGTTATATTGTTCGGTTT 58.625 30.769 0.00 0.00 0.00 3.27
291 293 6.919721 ACTGCAAATGTTATATTGTTCGGTT 58.080 32.000 0.00 0.00 0.00 4.44
292 294 6.509418 ACTGCAAATGTTATATTGTTCGGT 57.491 33.333 0.00 0.00 0.00 4.69
293 295 6.237542 GCAACTGCAAATGTTATATTGTTCGG 60.238 38.462 0.00 0.00 41.59 4.30
294 296 6.685767 GCAACTGCAAATGTTATATTGTTCG 58.314 36.000 0.00 0.00 41.59 3.95
311 313 6.674066 TGTAAAGTTATAGGTTTGCAACTGC 58.326 36.000 0.00 0.00 42.50 4.40
312 314 9.691362 AAATGTAAAGTTATAGGTTTGCAACTG 57.309 29.630 0.00 0.00 32.94 3.16
325 327 9.914131 GGAGCTGAAAAGAAAATGTAAAGTTAT 57.086 29.630 0.00 0.00 0.00 1.89
326 328 8.073768 CGGAGCTGAAAAGAAAATGTAAAGTTA 58.926 33.333 0.00 0.00 0.00 2.24
327 329 6.918022 CGGAGCTGAAAAGAAAATGTAAAGTT 59.082 34.615 0.00 0.00 0.00 2.66
328 330 6.438763 CGGAGCTGAAAAGAAAATGTAAAGT 58.561 36.000 0.00 0.00 0.00 2.66
329 331 5.858581 CCGGAGCTGAAAAGAAAATGTAAAG 59.141 40.000 0.00 0.00 0.00 1.85
330 332 5.533154 TCCGGAGCTGAAAAGAAAATGTAAA 59.467 36.000 0.00 0.00 0.00 2.01
331 333 5.067273 TCCGGAGCTGAAAAGAAAATGTAA 58.933 37.500 0.00 0.00 0.00 2.41
332 334 4.647611 TCCGGAGCTGAAAAGAAAATGTA 58.352 39.130 0.00 0.00 0.00 2.29
333 335 3.486383 TCCGGAGCTGAAAAGAAAATGT 58.514 40.909 0.00 0.00 0.00 2.71
334 336 4.229876 GTTCCGGAGCTGAAAAGAAAATG 58.770 43.478 11.59 0.00 0.00 2.32
335 337 3.255888 GGTTCCGGAGCTGAAAAGAAAAT 59.744 43.478 18.44 0.00 0.00 1.82
336 338 2.621526 GGTTCCGGAGCTGAAAAGAAAA 59.378 45.455 18.44 0.00 0.00 2.29
337 339 2.227194 GGTTCCGGAGCTGAAAAGAAA 58.773 47.619 18.44 0.00 0.00 2.52
338 340 1.142060 TGGTTCCGGAGCTGAAAAGAA 59.858 47.619 18.44 0.00 0.00 2.52
339 341 0.762418 TGGTTCCGGAGCTGAAAAGA 59.238 50.000 18.44 0.00 0.00 2.52
340 342 0.875059 GTGGTTCCGGAGCTGAAAAG 59.125 55.000 18.44 0.00 0.00 2.27
341 343 0.536460 GGTGGTTCCGGAGCTGAAAA 60.536 55.000 18.44 0.00 0.00 2.29
342 344 1.072505 GGTGGTTCCGGAGCTGAAA 59.927 57.895 18.44 0.00 0.00 2.69
343 345 2.111999 CTGGTGGTTCCGGAGCTGAA 62.112 60.000 18.44 1.57 45.09 3.02
344 346 2.525629 TGGTGGTTCCGGAGCTGA 60.526 61.111 18.44 2.31 39.52 4.26
345 347 2.046892 CTGGTGGTTCCGGAGCTG 60.047 66.667 18.44 0.36 45.09 4.24
346 348 2.203788 TCTGGTGGTTCCGGAGCT 60.204 61.111 18.44 0.00 45.77 4.09
350 352 0.036671 GTAAGGTCTGGTGGTTCCGG 60.037 60.000 0.00 0.00 43.70 5.14
351 353 0.974383 AGTAAGGTCTGGTGGTTCCG 59.026 55.000 0.00 0.00 39.52 4.30
352 354 3.409570 GAAAGTAAGGTCTGGTGGTTCC 58.590 50.000 0.00 0.00 0.00 3.62
353 355 3.409570 GGAAAGTAAGGTCTGGTGGTTC 58.590 50.000 0.00 0.00 0.00 3.62
354 356 2.224450 CGGAAAGTAAGGTCTGGTGGTT 60.224 50.000 0.00 0.00 0.00 3.67
355 357 1.346722 CGGAAAGTAAGGTCTGGTGGT 59.653 52.381 0.00 0.00 0.00 4.16
356 358 1.338769 CCGGAAAGTAAGGTCTGGTGG 60.339 57.143 0.00 0.00 35.81 4.61
357 359 1.621814 TCCGGAAAGTAAGGTCTGGTG 59.378 52.381 0.00 0.00 40.63 4.17
358 360 2.019807 TCCGGAAAGTAAGGTCTGGT 57.980 50.000 0.00 0.00 40.63 4.00
359 361 3.412237 TTTCCGGAAAGTAAGGTCTGG 57.588 47.619 25.67 0.00 41.07 3.86
360 362 4.820173 AGTTTTTCCGGAAAGTAAGGTCTG 59.180 41.667 27.48 0.00 0.00 3.51
361 363 5.045012 AGTTTTTCCGGAAAGTAAGGTCT 57.955 39.130 27.48 15.90 0.00 3.85
362 364 5.762825 AAGTTTTTCCGGAAAGTAAGGTC 57.237 39.130 27.48 14.24 0.00 3.85
363 365 5.163488 CCAAAGTTTTTCCGGAAAGTAAGGT 60.163 40.000 27.48 11.59 0.00 3.50
364 366 5.068067 TCCAAAGTTTTTCCGGAAAGTAAGG 59.932 40.000 27.48 23.14 0.00 2.69
365 367 6.139048 TCCAAAGTTTTTCCGGAAAGTAAG 57.861 37.500 27.48 16.55 0.00 2.34
366 368 6.527057 TTCCAAAGTTTTTCCGGAAAGTAA 57.473 33.333 27.48 18.31 32.90 2.24
367 369 5.450826 GCTTCCAAAGTTTTTCCGGAAAGTA 60.451 40.000 27.48 17.77 35.41 2.24
368 370 4.679639 GCTTCCAAAGTTTTTCCGGAAAGT 60.680 41.667 27.48 14.92 35.41 2.66
369 371 3.802139 GCTTCCAAAGTTTTTCCGGAAAG 59.198 43.478 27.48 15.76 35.41 2.62
370 372 3.195825 TGCTTCCAAAGTTTTTCCGGAAA 59.804 39.130 25.67 25.67 35.41 3.13
371 373 2.761208 TGCTTCCAAAGTTTTTCCGGAA 59.239 40.909 14.35 14.35 34.64 4.30
372 374 2.379972 TGCTTCCAAAGTTTTTCCGGA 58.620 42.857 0.00 0.00 0.00 5.14
373 375 2.880963 TGCTTCCAAAGTTTTTCCGG 57.119 45.000 0.00 0.00 0.00 5.14
374 376 4.201773 GGTTTTGCTTCCAAAGTTTTTCCG 60.202 41.667 0.00 0.00 41.58 4.30
375 377 4.941263 AGGTTTTGCTTCCAAAGTTTTTCC 59.059 37.500 0.00 0.00 41.58 3.13
376 378 7.786178 ATAGGTTTTGCTTCCAAAGTTTTTC 57.214 32.000 0.00 0.00 41.58 2.29
377 379 9.271828 CATATAGGTTTTGCTTCCAAAGTTTTT 57.728 29.630 0.00 0.00 41.58 1.94
378 380 8.646900 TCATATAGGTTTTGCTTCCAAAGTTTT 58.353 29.630 0.00 0.00 41.58 2.43
379 381 8.189119 TCATATAGGTTTTGCTTCCAAAGTTT 57.811 30.769 0.00 0.00 41.58 2.66
380 382 7.775053 TCATATAGGTTTTGCTTCCAAAGTT 57.225 32.000 0.00 0.00 41.58 2.66
381 383 7.451566 ACTTCATATAGGTTTTGCTTCCAAAGT 59.548 33.333 0.00 0.00 41.58 2.66
382 384 7.830739 ACTTCATATAGGTTTTGCTTCCAAAG 58.169 34.615 0.00 0.00 41.58 2.77
383 385 7.775053 ACTTCATATAGGTTTTGCTTCCAAA 57.225 32.000 0.00 0.00 39.08 3.28
384 386 7.669722 AGAACTTCATATAGGTTTTGCTTCCAA 59.330 33.333 0.00 0.00 0.00 3.53
385 387 7.175104 AGAACTTCATATAGGTTTTGCTTCCA 58.825 34.615 0.00 0.00 0.00 3.53
386 388 7.631717 AGAACTTCATATAGGTTTTGCTTCC 57.368 36.000 0.00 0.00 0.00 3.46
389 391 8.624776 GCAATAGAACTTCATATAGGTTTTGCT 58.375 33.333 0.00 0.00 34.34 3.91
390 392 8.624776 AGCAATAGAACTTCATATAGGTTTTGC 58.375 33.333 0.00 0.00 35.88 3.68
395 397 9.905713 TCAAAAGCAATAGAACTTCATATAGGT 57.094 29.630 0.00 0.00 0.00 3.08
415 417 5.467063 AGGAAGTAGTTTTCGAGCTCAAAAG 59.533 40.000 15.40 0.00 0.00 2.27
416 418 5.365619 AGGAAGTAGTTTTCGAGCTCAAAA 58.634 37.500 15.40 15.51 0.00 2.44
417 419 4.957296 AGGAAGTAGTTTTCGAGCTCAAA 58.043 39.130 15.40 10.50 0.00 2.69
418 420 4.557205 GAGGAAGTAGTTTTCGAGCTCAA 58.443 43.478 15.40 4.52 0.00 3.02
419 421 3.056749 GGAGGAAGTAGTTTTCGAGCTCA 60.057 47.826 15.40 0.00 0.00 4.26
420 422 3.056749 TGGAGGAAGTAGTTTTCGAGCTC 60.057 47.826 2.73 2.73 0.00 4.09
436 438 4.141711 GCGCTTATATTATGGGATGGAGGA 60.142 45.833 0.00 0.00 0.00 3.71
437 439 4.130118 GCGCTTATATTATGGGATGGAGG 58.870 47.826 0.00 0.00 0.00 4.30
440 442 3.309682 CACGCGCTTATATTATGGGATGG 59.690 47.826 5.73 0.00 0.00 3.51
441 443 3.932710 ACACGCGCTTATATTATGGGATG 59.067 43.478 5.73 0.00 0.00 3.51
442 444 4.202245 ACACGCGCTTATATTATGGGAT 57.798 40.909 5.73 0.00 0.00 3.85
651 657 0.984230 TGAAGGAGCATCGAAAGGGT 59.016 50.000 0.00 0.00 34.37 4.34
773 781 2.188207 GCCGCTTCCTCTTCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
1077 1155 1.602327 GGAGGAGGTCGTACGGCTTT 61.602 60.000 20.62 8.52 0.00 3.51
1481 1559 0.972883 AAGAAGAAGAGCACGAGCCT 59.027 50.000 0.00 0.00 43.56 4.58
1499 1577 3.561313 GGAAACTAGGAACAGGGCATGAA 60.561 47.826 5.99 0.00 0.00 2.57
1507 1585 5.178797 CACATGGTAGGAAACTAGGAACAG 58.821 45.833 0.00 0.00 45.49 3.16
1853 1931 4.782019 TGGTGTCTTGCCAACATAAATC 57.218 40.909 0.00 0.00 32.29 2.17
1869 1947 3.541242 TTTTCCCCAATGAGATGGTGT 57.459 42.857 0.00 0.00 38.91 4.16
2078 2169 9.238368 GAGAAGATATGCTAGAGGTTATAGTGT 57.762 37.037 0.00 0.00 0.00 3.55
2266 2357 3.697542 CCTTGTGGCAATCATCTTGATCA 59.302 43.478 0.00 0.00 35.76 2.92
2437 2541 8.778358 GCAACTTGATAAACTAAGCAGCTATAT 58.222 33.333 0.00 0.00 0.00 0.86
6271 6693 4.081531 CCAATAAACCAGGACGTAGGTACA 60.082 45.833 7.18 0.13 37.07 2.90
6272 6694 4.081476 ACCAATAAACCAGGACGTAGGTAC 60.081 45.833 7.18 0.00 37.07 3.34
6278 6700 1.003928 GGGACCAATAAACCAGGACGT 59.996 52.381 0.00 0.00 0.00 4.34
6617 7097 2.267426 TCACGAATACACTGGCAATCG 58.733 47.619 0.00 0.00 36.45 3.34
6833 7313 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6835 7315 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6836 7316 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6837 7317 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6838 7318 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6839 7319 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6853 7333 9.787532 CACTTGTTGAAATTTCTAGAAAGACAA 57.212 29.630 21.75 20.91 33.32 3.18
6854 7334 9.173021 TCACTTGTTGAAATTTCTAGAAAGACA 57.827 29.630 21.75 17.21 33.32 3.41
6855 7335 9.439537 GTCACTTGTTGAAATTTCTAGAAAGAC 57.560 33.333 21.75 19.93 35.39 3.01
6856 7336 9.396022 AGTCACTTGTTGAAATTTCTAGAAAGA 57.604 29.630 21.75 15.31 35.39 2.52
6859 7339 9.607988 TGTAGTCACTTGTTGAAATTTCTAGAA 57.392 29.630 18.64 14.37 35.39 2.10
6860 7340 9.778741 ATGTAGTCACTTGTTGAAATTTCTAGA 57.221 29.630 18.64 7.52 35.39 2.43
6863 7343 8.070171 CGAATGTAGTCACTTGTTGAAATTTCT 58.930 33.333 18.64 0.00 35.39 2.52
6864 7344 8.067784 TCGAATGTAGTCACTTGTTGAAATTTC 58.932 33.333 11.41 11.41 35.39 2.17
6865 7345 7.925993 TCGAATGTAGTCACTTGTTGAAATTT 58.074 30.769 0.00 0.00 35.39 1.82
6866 7346 7.490962 TCGAATGTAGTCACTTGTTGAAATT 57.509 32.000 0.00 0.00 35.39 1.82
6867 7347 7.490962 TTCGAATGTAGTCACTTGTTGAAAT 57.509 32.000 0.00 0.00 35.39 2.17
6868 7348 6.511121 GCTTCGAATGTAGTCACTTGTTGAAA 60.511 38.462 0.00 0.00 35.39 2.69
6869 7349 5.050363 GCTTCGAATGTAGTCACTTGTTGAA 60.050 40.000 0.00 0.00 35.39 2.69
6870 7350 4.447724 GCTTCGAATGTAGTCACTTGTTGA 59.552 41.667 0.00 0.00 0.00 3.18
6871 7351 4.211164 TGCTTCGAATGTAGTCACTTGTTG 59.789 41.667 0.00 0.00 0.00 3.33
6872 7352 4.377021 TGCTTCGAATGTAGTCACTTGTT 58.623 39.130 0.00 0.00 0.00 2.83
6873 7353 3.990092 TGCTTCGAATGTAGTCACTTGT 58.010 40.909 0.00 0.00 0.00 3.16
6874 7354 4.990543 TTGCTTCGAATGTAGTCACTTG 57.009 40.909 0.00 0.00 0.00 3.16
6875 7355 6.204688 TCATTTTGCTTCGAATGTAGTCACTT 59.795 34.615 0.00 0.00 35.35 3.16
6876 7356 5.700832 TCATTTTGCTTCGAATGTAGTCACT 59.299 36.000 0.00 0.00 35.35 3.41
6877 7357 5.927030 TCATTTTGCTTCGAATGTAGTCAC 58.073 37.500 0.00 0.00 35.35 3.67
6878 7358 5.700832 ACTCATTTTGCTTCGAATGTAGTCA 59.299 36.000 0.00 0.00 35.35 3.41
6879 7359 6.017933 CACTCATTTTGCTTCGAATGTAGTC 58.982 40.000 0.00 0.00 35.35 2.59
6880 7360 5.700832 TCACTCATTTTGCTTCGAATGTAGT 59.299 36.000 0.00 0.00 35.35 2.73
6881 7361 6.169419 TCACTCATTTTGCTTCGAATGTAG 57.831 37.500 0.00 0.00 35.35 2.74
6882 7362 6.552859 TTCACTCATTTTGCTTCGAATGTA 57.447 33.333 0.00 0.00 35.35 2.29
6888 7368 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
6919 7399 8.577296 GCCACATACGGATGTATATAGACATAT 58.423 37.037 14.23 5.08 44.82 1.78
6920 7400 7.558444 TGCCACATACGGATGTATATAGACATA 59.442 37.037 14.23 0.00 44.82 2.29
6921 7401 6.379988 TGCCACATACGGATGTATATAGACAT 59.620 38.462 14.23 12.70 44.82 3.06
6922 7402 5.712917 TGCCACATACGGATGTATATAGACA 59.287 40.000 14.23 2.07 44.82 3.41
6923 7403 6.127703 ACTGCCACATACGGATGTATATAGAC 60.128 42.308 14.23 0.00 44.82 2.59
6924 7404 5.949952 ACTGCCACATACGGATGTATATAGA 59.050 40.000 14.23 0.00 44.82 1.98
6925 7405 6.095580 AGACTGCCACATACGGATGTATATAG 59.904 42.308 14.23 11.73 44.82 1.31
6926 7406 5.949952 AGACTGCCACATACGGATGTATATA 59.050 40.000 14.23 0.00 44.82 0.86
6927 7407 4.772624 AGACTGCCACATACGGATGTATAT 59.227 41.667 14.23 0.00 44.82 0.86
6928 7408 4.149598 AGACTGCCACATACGGATGTATA 58.850 43.478 14.23 1.74 44.82 1.47
6929 7409 2.965831 AGACTGCCACATACGGATGTAT 59.034 45.455 14.23 0.00 44.82 2.29
6930 7410 2.384828 AGACTGCCACATACGGATGTA 58.615 47.619 14.23 0.00 44.82 2.29
6932 7412 3.667497 ATAGACTGCCACATACGGATG 57.333 47.619 5.94 5.94 39.16 3.51
6933 7413 4.100963 TCAAATAGACTGCCACATACGGAT 59.899 41.667 0.00 0.00 0.00 4.18
6934 7414 3.449377 TCAAATAGACTGCCACATACGGA 59.551 43.478 0.00 0.00 0.00 4.69
6935 7415 3.792401 TCAAATAGACTGCCACATACGG 58.208 45.455 0.00 0.00 0.00 4.02
6936 7416 5.794687 TTTCAAATAGACTGCCACATACG 57.205 39.130 0.00 0.00 0.00 3.06
6937 7417 7.497249 AGAGATTTCAAATAGACTGCCACATAC 59.503 37.037 0.00 0.00 0.00 2.39
6938 7418 7.568349 AGAGATTTCAAATAGACTGCCACATA 58.432 34.615 0.00 0.00 0.00 2.29
6939 7419 6.421485 AGAGATTTCAAATAGACTGCCACAT 58.579 36.000 0.00 0.00 0.00 3.21
6940 7420 5.809001 AGAGATTTCAAATAGACTGCCACA 58.191 37.500 0.00 0.00 0.00 4.17
6941 7421 7.849804 TTAGAGATTTCAAATAGACTGCCAC 57.150 36.000 0.00 0.00 0.00 5.01
6942 7422 8.862325 TTTTAGAGATTTCAAATAGACTGCCA 57.138 30.769 0.00 0.00 0.00 4.92
6943 7423 9.780413 CTTTTTAGAGATTTCAAATAGACTGCC 57.220 33.333 0.00 0.00 0.00 4.85
6964 7444 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
6965 7445 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
6966 7446 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6967 7447 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6968 7448 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6969 7449 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6970 7450 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6971 7451 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6972 7452 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6973 7453 7.441903 TTTACTCCCTCCGTTCCTAAATATT 57.558 36.000 0.00 0.00 0.00 1.28
6974 7454 7.628501 ATTTACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
7466 7965 8.950210 AGAACCATCACATAAAACATTAGACAG 58.050 33.333 0.00 0.00 0.00 3.51
7840 8339 4.333649 CGGACTAAAACATGATGCACTGAT 59.666 41.667 0.00 0.00 0.00 2.90
7843 8342 3.937814 TCGGACTAAAACATGATGCACT 58.062 40.909 0.00 0.00 0.00 4.40
7854 8353 4.877823 TCTCTGCGTAGTATCGGACTAAAA 59.122 41.667 0.00 0.00 42.43 1.52
7875 8374 5.740282 CTGCAAGAAGAAGAGCTGGCTCT 62.740 52.174 18.10 18.10 46.79 4.09
8206 8705 5.513495 CGGTGAATTGTTTTCGAACTCAAAA 59.487 36.000 15.02 0.00 0.00 2.44
8215 8714 2.482721 AGTAGCCGGTGAATTGTTTTCG 59.517 45.455 1.90 0.00 0.00 3.46
8222 8721 5.138276 TCTATACTGAGTAGCCGGTGAATT 58.862 41.667 1.90 0.00 0.00 2.17
8242 8741 6.614694 TTACCTACACCATGAAGCTTTCTA 57.385 37.500 0.00 0.00 0.00 2.10
8243 8742 5.499004 TTACCTACACCATGAAGCTTTCT 57.501 39.130 0.00 0.00 0.00 2.52
8374 8873 5.464722 CAGACAAGACACTATCCATGTATGC 59.535 44.000 0.00 0.00 33.04 3.14
8416 8915 1.757118 ACACCTATCACATCTGGGTCG 59.243 52.381 0.00 0.00 0.00 4.79
8424 8924 6.115446 CAGGTTTACATCACACCTATCACAT 58.885 40.000 0.00 0.00 39.01 3.21
8433 8934 5.116882 GGTCTATCCAGGTTTACATCACAC 58.883 45.833 0.00 0.00 35.97 3.82
8520 9021 3.857157 TGTAGGAAAAGCAGGACACTT 57.143 42.857 0.00 0.00 0.00 3.16
8557 9058 6.312426 TGCAACACAAATTACCAAAGAAACTG 59.688 34.615 0.00 0.00 0.00 3.16
8667 9256 3.828451 AGTACAAAGGGCAAGTCGTACTA 59.172 43.478 0.00 0.00 38.16 1.82
8668 9257 2.631545 AGTACAAAGGGCAAGTCGTACT 59.368 45.455 0.00 0.00 35.82 2.73
8669 9258 2.735134 CAGTACAAAGGGCAAGTCGTAC 59.265 50.000 0.00 0.00 0.00 3.67
8670 9259 2.289195 CCAGTACAAAGGGCAAGTCGTA 60.289 50.000 0.00 0.00 0.00 3.43
8671 9260 1.542547 CCAGTACAAAGGGCAAGTCGT 60.543 52.381 0.00 0.00 0.00 4.34
8672 9261 1.156736 CCAGTACAAAGGGCAAGTCG 58.843 55.000 0.00 0.00 0.00 4.18
8725 9315 8.894768 AATAACCTGAAGCAGATACTTGTATC 57.105 34.615 11.61 11.61 32.44 2.24
8792 9382 0.248621 GCCCTATGTTTGCGATGCAC 60.249 55.000 0.00 0.00 38.71 4.57
8795 9385 3.117794 CAATTGCCCTATGTTTGCGATG 58.882 45.455 0.00 0.00 0.00 3.84
8835 9425 7.923414 AAGGACATAGTTTAATCTCACAACC 57.077 36.000 0.00 0.00 0.00 3.77
8854 9451 4.202010 ACAAACAACACACATGCTAAGGAC 60.202 41.667 0.00 0.00 0.00 3.85
8933 9660 2.249413 CTCTCCTTGTGCGCCAGGAT 62.249 60.000 19.55 0.00 0.00 3.24
8955 9682 3.637273 GTCCTGGCCCCGAACACT 61.637 66.667 0.00 0.00 0.00 3.55
8962 9689 2.198304 AATTCAGTCGTCCTGGCCCC 62.198 60.000 0.00 0.00 41.83 5.80
8963 9690 1.026718 CAATTCAGTCGTCCTGGCCC 61.027 60.000 0.00 0.00 41.83 5.80
8964 9691 1.026718 CCAATTCAGTCGTCCTGGCC 61.027 60.000 0.00 0.00 41.83 5.36
8965 9692 0.321653 ACCAATTCAGTCGTCCTGGC 60.322 55.000 5.29 0.00 41.83 4.85
8966 9693 1.001974 TCACCAATTCAGTCGTCCTGG 59.998 52.381 5.29 0.00 41.83 4.45
8967 9694 2.029020 TCTCACCAATTCAGTCGTCCTG 60.029 50.000 0.00 0.00 42.97 3.86
8968 9695 2.248248 TCTCACCAATTCAGTCGTCCT 58.752 47.619 0.00 0.00 0.00 3.85
8969 9696 2.743636 TCTCACCAATTCAGTCGTCC 57.256 50.000 0.00 0.00 0.00 4.79
8970 9697 2.932614 CCATCTCACCAATTCAGTCGTC 59.067 50.000 0.00 0.00 0.00 4.20
8971 9698 2.567169 TCCATCTCACCAATTCAGTCGT 59.433 45.455 0.00 0.00 0.00 4.34
8972 9699 3.251479 TCCATCTCACCAATTCAGTCG 57.749 47.619 0.00 0.00 0.00 4.18
8973 9700 4.578105 GGAATCCATCTCACCAATTCAGTC 59.422 45.833 0.00 0.00 0.00 3.51
8974 9701 4.018141 TGGAATCCATCTCACCAATTCAGT 60.018 41.667 0.00 0.00 0.00 3.41
8975 9702 4.529897 TGGAATCCATCTCACCAATTCAG 58.470 43.478 0.00 0.00 0.00 3.02
8976 9703 4.227982 TCTGGAATCCATCTCACCAATTCA 59.772 41.667 0.87 0.00 30.82 2.57
8977 9704 4.785301 TCTGGAATCCATCTCACCAATTC 58.215 43.478 0.87 0.00 30.82 2.17
8978 9705 4.868172 TCTGGAATCCATCTCACCAATT 57.132 40.909 0.87 0.00 30.82 2.32
8979 9706 4.664064 AGATCTGGAATCCATCTCACCAAT 59.336 41.667 0.87 0.00 30.82 3.16
8980 9707 4.042884 AGATCTGGAATCCATCTCACCAA 58.957 43.478 0.87 0.00 30.82 3.67
8981 9708 3.390311 CAGATCTGGAATCCATCTCACCA 59.610 47.826 15.38 0.00 30.82 4.17
8982 9709 3.645212 TCAGATCTGGAATCCATCTCACC 59.355 47.826 22.42 0.00 30.82 4.02
8983 9710 4.344679 ACTCAGATCTGGAATCCATCTCAC 59.655 45.833 22.42 0.00 30.82 3.51
8984 9711 4.554683 ACTCAGATCTGGAATCCATCTCA 58.445 43.478 22.42 0.00 30.82 3.27
8985 9712 5.549742 AACTCAGATCTGGAATCCATCTC 57.450 43.478 22.42 2.68 30.82 2.75
8986 9713 5.666718 AGAAACTCAGATCTGGAATCCATCT 59.333 40.000 22.42 13.29 30.82 2.90
8987 9714 5.927819 AGAAACTCAGATCTGGAATCCATC 58.072 41.667 22.42 11.49 30.82 3.51
8988 9715 5.972327 AGAAACTCAGATCTGGAATCCAT 57.028 39.130 22.42 3.25 30.82 3.41
8989 9716 5.768980 AAGAAACTCAGATCTGGAATCCA 57.231 39.130 22.42 0.48 0.00 3.41
8990 9717 7.118496 TCTAAGAAACTCAGATCTGGAATCC 57.882 40.000 22.42 9.54 0.00 3.01
8991 9718 6.701400 GCTCTAAGAAACTCAGATCTGGAATC 59.299 42.308 22.42 14.75 0.00 2.52
8992 9719 6.155910 TGCTCTAAGAAACTCAGATCTGGAAT 59.844 38.462 22.42 6.88 0.00 3.01
8993 9720 5.481824 TGCTCTAAGAAACTCAGATCTGGAA 59.518 40.000 22.42 3.33 0.00 3.53
8998 9760 7.042797 AGAGATGCTCTAAGAAACTCAGATC 57.957 40.000 0.00 0.00 39.28 2.75
9046 9850 7.669677 AAAAAGGATAGGGGATAGAATGGAT 57.330 36.000 0.00 0.00 0.00 3.41
9076 9880 6.596497 GGTTAGACGATGAAGGTTTAATTCCA 59.404 38.462 0.00 0.00 0.00 3.53
9077 9881 6.822170 AGGTTAGACGATGAAGGTTTAATTCC 59.178 38.462 0.00 0.00 0.00 3.01
9094 9898 9.752961 GATTAAGTTTCAGGAGATAGGTTAGAC 57.247 37.037 0.00 0.00 0.00 2.59
9099 9903 5.369993 GGGGATTAAGTTTCAGGAGATAGGT 59.630 44.000 0.00 0.00 0.00 3.08
9109 9913 7.512402 AGGAATTTTTCAGGGGATTAAGTTTCA 59.488 33.333 0.00 0.00 0.00 2.69
9153 9957 3.370978 CACATTCGAACTAGGATTTGCGT 59.629 43.478 0.00 0.00 0.00 5.24
9154 9958 3.785505 GCACATTCGAACTAGGATTTGCG 60.786 47.826 0.00 0.00 0.00 4.85
9155 9959 3.685058 GCACATTCGAACTAGGATTTGC 58.315 45.455 0.00 0.00 0.00 3.68
9156 9960 3.370978 ACGCACATTCGAACTAGGATTTG 59.629 43.478 0.00 0.00 0.00 2.32
9157 9961 3.596214 ACGCACATTCGAACTAGGATTT 58.404 40.909 0.00 0.00 0.00 2.17
9158 9962 3.187700 GACGCACATTCGAACTAGGATT 58.812 45.455 0.00 0.00 0.00 3.01
9159 9963 2.481449 GGACGCACATTCGAACTAGGAT 60.481 50.000 0.00 0.00 0.00 3.24
9160 9964 1.135199 GGACGCACATTCGAACTAGGA 60.135 52.381 0.00 0.00 0.00 2.94
9161 9965 1.278238 GGACGCACATTCGAACTAGG 58.722 55.000 0.00 0.00 0.00 3.02
9162 9966 1.135083 AGGGACGCACATTCGAACTAG 60.135 52.381 0.00 0.00 0.00 2.57
9163 9967 0.892755 AGGGACGCACATTCGAACTA 59.107 50.000 0.00 0.00 0.00 2.24
9164 9968 0.892755 TAGGGACGCACATTCGAACT 59.107 50.000 0.00 0.00 0.00 3.01
9165 9969 1.135199 TCTAGGGACGCACATTCGAAC 60.135 52.381 0.00 0.00 0.00 3.95
9166 9970 1.179152 TCTAGGGACGCACATTCGAA 58.821 50.000 0.00 0.00 0.00 3.71
9167 9971 1.337071 GATCTAGGGACGCACATTCGA 59.663 52.381 0.00 0.00 0.00 3.71
9168 9972 1.338337 AGATCTAGGGACGCACATTCG 59.662 52.381 0.00 0.00 0.00 3.34
9169 9973 3.126831 CAAGATCTAGGGACGCACATTC 58.873 50.000 0.00 0.00 0.00 2.67
9170 9974 2.158900 CCAAGATCTAGGGACGCACATT 60.159 50.000 7.43 0.00 0.00 2.71
9171 9975 1.414181 CCAAGATCTAGGGACGCACAT 59.586 52.381 7.43 0.00 0.00 3.21
9172 9976 0.824109 CCAAGATCTAGGGACGCACA 59.176 55.000 7.43 0.00 0.00 4.57
9173 9977 0.530870 GCCAAGATCTAGGGACGCAC 60.531 60.000 15.67 0.00 0.00 5.34
9174 9978 0.687757 AGCCAAGATCTAGGGACGCA 60.688 55.000 15.67 0.00 0.00 5.24
9175 9979 2.128729 AGCCAAGATCTAGGGACGC 58.871 57.895 15.67 3.21 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.