AutoCloner

Multiple sequence alignment - TraesCS1D01G240200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G240200	chr1D	100.000	5267	0	0	1	5267	329796818	329791552	0.000000e+00	9727
1	TraesCS1D01G240200	chr1D	97.365	835	19	1	1	835	153979522	153978691	0.000000e+00	1417
2	TraesCS1D01G240200	chr1D	97.246	835	23	0	1	835	321890551	321889717	0.000000e+00	1415
3	TraesCS1D01G240200	chr1B	95.893	4261	149	18	1016	5267	444865545	444861302	0.000000e+00	6876
4	TraesCS1D01G240200	chr1B	89.524	105	10	1	3065	3168	444863411	444863307	1.190000e-26	132
5	TraesCS1D01G240200	chr1B	94.444	72	4	0	846	917	444865659	444865588	1.550000e-20	111
6	TraesCS1D01G240200	chr1A	94.597	3794	175	13	1043	4822	427041253	427037476	0.000000e+00	5843
7	TraesCS1D01G240200	chr1A	88.940	217	9	6	851	1059	427042310	427042101	2.430000e-63	254
8	TraesCS1D01G240200	chr1A	82.639	288	27	9	4993	5264	427035840	427035560	3.170000e-57	233
9	TraesCS1D01G240200	chr1A	89.524	105	10	1	3160	3264	427039241	427039138	1.190000e-26	132
10	TraesCS1D01G240200	chr2D	97.485	835	21	0	1	835	580500625	580499791	0.000000e+00	1426
11	TraesCS1D01G240200	chr7D	97.365	835	22	0	1	835	153258598	153257764	0.000000e+00	1421
12	TraesCS1D01G240200	chr7D	97.365	835	22	0	1	835	174069739	174070573	0.000000e+00	1421
13	TraesCS1D01G240200	chr6D	97.246	835	23	0	1	835	196015653	196016487	0.000000e+00	1415
14	TraesCS1D01G240200	chr6D	74.873	589	127	15	1440	2016	20792925	20793504	1.130000e-61	248
15	TraesCS1D01G240200	chr4D	97.246	835	23	0	1	835	21093244	21092410	0.000000e+00	1415
16	TraesCS1D01G240200	chr4D	97.246	835	23	0	1	835	490429808	490430642	0.000000e+00	1415
17	TraesCS1D01G240200	chr3D	97.242	834	23	0	2	835	59478466	59477633	0.000000e+00	1413
18	TraesCS1D01G240200	chr5D	73.216	1359	299	53	1280	2601	478742308	478740978	2.910000e-117	433
19	TraesCS1D01G240200	chr6A	74.419	516	113	15	1512	2016	20902981	20903488	2.490000e-48	204

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G240200	chr1D	329791552	329796818	5266	True	9727.0	9727	100.000	1	5267	1	chr1D.!!$R3	5266
1	TraesCS1D01G240200	chr1D	153978691	153979522	831	True	1417.0	1417	97.365	1	835	1	chr1D.!!$R1	834
2	TraesCS1D01G240200	chr1D	321889717	321890551	834	True	1415.0	1415	97.246	1	835	1	chr1D.!!$R2	834
3	TraesCS1D01G240200	chr1B	444861302	444865659	4357	True	2373.0	6876	93.287	846	5267	3	chr1B.!!$R1	4421
4	TraesCS1D01G240200	chr1A	427035560	427042310	6750	True	1615.5	5843	88.925	851	5264	4	chr1A.!!$R1	4413
5	TraesCS1D01G240200	chr2D	580499791	580500625	834	True	1426.0	1426	97.485	1	835	1	chr2D.!!$R1	834
6	TraesCS1D01G240200	chr7D	153257764	153258598	834	True	1421.0	1421	97.365	1	835	1	chr7D.!!$R1	834
7	TraesCS1D01G240200	chr7D	174069739	174070573	834	False	1421.0	1421	97.365	1	835	1	chr7D.!!$F1	834
8	TraesCS1D01G240200	chr6D	196015653	196016487	834	False	1415.0	1415	97.246	1	835	1	chr6D.!!$F2	834
9	TraesCS1D01G240200	chr6D	20792925	20793504	579	False	248.0	248	74.873	1440	2016	1	chr6D.!!$F1	576
10	TraesCS1D01G240200	chr4D	21092410	21093244	834	True	1415.0	1415	97.246	1	835	1	chr4D.!!$R1	834
11	TraesCS1D01G240200	chr4D	490429808	490430642	834	False	1415.0	1415	97.246	1	835	1	chr4D.!!$F1	834
12	TraesCS1D01G240200	chr3D	59477633	59478466	833	True	1413.0	1413	97.242	2	835	1	chr3D.!!$R1	833
13	TraesCS1D01G240200	chr5D	478740978	478742308	1330	True	433.0	433	73.216	1280	2601	1	chr5D.!!$R1	1321
14	TraesCS1D01G240200	chr6A	20902981	20903488	507	False	204.0	204	74.419	1512	2016	1	chr6A.!!$F1	504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
292	293	0.107459	GACATTGGCCAGAGTCCTCC	60.107	60.000	22.43	4.82	0.0	4.30	F
917	918	0.251916	CTGTCCTATCCACCGGCAAA	59.748	55.000	0.00	0.00	0.0	3.68	F
918	919	0.251916	TGTCCTATCCACCGGCAAAG	59.748	55.000	0.00	0.00	0.0	2.77	F
921	922	0.679640	CCTATCCACCGGCAAAGCAA	60.680	55.000	0.00	0.00	0.0	3.91	F
2304	3193	1.078848	CCTTTGCTCCGTCTCCCAG	60.079	63.158	0.00	0.00	0.0	4.45	F
3252	4144	0.251297	TCAGTGGGCAAGGAACATGG	60.251	55.000	0.00	0.00	0.0	3.66	F
3914	4809	1.032114	GTTCCTTGGGCCCTTCATCG	61.032	60.000	25.70	4.38	0.0	3.84	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1171	2044	0.112412	GGGTTCTGGGCTTTGAGGAA	59.888	55.000	0.00	0.00	0.00	3.36	R
2304	3193	2.155279	GAACCCAAGAGCAACTCTTCC	58.845	52.381	6.88	0.00	46.42	3.46	R
2871	3760	2.429930	CTGACCGGGCAACTTCCA	59.570	61.111	13.37	0.00	0.00	3.53	R
2907	3796	4.020218	CCTTTCTTACACATCTCAGGGTCA	60.020	45.833	0.00	0.00	0.00	4.02	R
3340	4232	0.179048	TCCTGTTGACCACTGTGCAG	60.179	55.000	1.29	3.97	0.00	4.41	R
4072	4971	1.794785	CGCTAAACGCACGAGACGA	60.795	57.895	0.00	0.00	39.08	4.20	R
5123	7523	4.919206	TGTTCATTGTGTCACAACATCAC	58.081	39.130	20.41	14.30	41.40	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
66	67	4.173971	GCAGCCTTGCGAAATTGG	57.826	55.556	0.00	0.00	41.13	3.16
214	215	5.989777	GCTTTGTAGTTGAGTGAAGACCTTA	59.010	40.000	0.00	0.00	0.00	2.69
292	293	0.107459	GACATTGGCCAGAGTCCTCC	60.107	60.000	22.43	4.82	0.00	4.30
633	634	5.822519	TGCTTTGTAGTGAGTGTTTTCAGAT	59.177	36.000	0.00	0.00	0.00	2.90
670	671	3.063180	CCATGAATTCACGTCTTCAGAGC	59.937	47.826	11.07	0.00	35.04	4.09
773	774	0.456312	CCAGCGTCGTAGAGAACACC	60.456	60.000	0.00	0.00	36.95	4.16
835	836	2.141517	GAGGAATGTGCTCATGATCGG	58.858	52.381	1.29	0.00	34.73	4.18
836	837	1.202734	AGGAATGTGCTCATGATCGGG	60.203	52.381	1.29	0.00	34.19	5.14
837	838	0.590195	GAATGTGCTCATGATCGGGC	59.410	55.000	1.29	0.00	34.19	6.13
838	839	1.162181	AATGTGCTCATGATCGGGCG	61.162	55.000	1.29	0.00	34.19	6.13
839	840	3.643978	GTGCTCATGATCGGGCGC	61.644	66.667	0.00	0.00	0.00	6.53
840	841	4.916293	TGCTCATGATCGGGCGCC	62.916	66.667	21.18	21.18	0.00	6.53
859	860	2.159142	GCCCGCTAAGCAACTAGAACTA	60.159	50.000	0.00	0.00	0.00	2.24
905	906	1.409064	GGCGACACATCATCTGTCCTA	59.591	52.381	0.00	0.00	35.29	2.94
912	913	2.630098	ACATCATCTGTCCTATCCACCG	59.370	50.000	0.00	0.00	29.94	4.94
917	918	0.251916	CTGTCCTATCCACCGGCAAA	59.748	55.000	0.00	0.00	0.00	3.68
918	919	0.251916	TGTCCTATCCACCGGCAAAG	59.748	55.000	0.00	0.00	0.00	2.77
919	920	1.095807	GTCCTATCCACCGGCAAAGC	61.096	60.000	0.00	0.00	0.00	3.51
920	921	1.077787	CCTATCCACCGGCAAAGCA	60.078	57.895	0.00	0.00	0.00	3.91
921	922	0.679640	CCTATCCACCGGCAAAGCAA	60.680	55.000	0.00	0.00	0.00	3.91
938	939	1.612442	AAGCCCCAGGACGCTTCTA	60.612	57.895	7.71	0.00	41.42	2.10
1013	1022	6.452494	ACGTAGATTTCTATATGATCCGGG	57.548	41.667	0.00	0.00	0.00	5.73
1149	2022	2.413837	CCTTAATCAAGGGCGATACCG	58.586	52.381	0.00	0.00	46.71	4.02
1150	2023	2.036733	CCTTAATCAAGGGCGATACCGA	59.963	50.000	0.00	0.00	46.71	4.69
1151	2024	3.306780	CCTTAATCAAGGGCGATACCGAT	60.307	47.826	0.00	0.00	46.71	4.18
1152	2025	4.081862	CCTTAATCAAGGGCGATACCGATA	60.082	45.833	0.00	0.00	46.71	2.92
1153	2026	5.395324	CCTTAATCAAGGGCGATACCGATAT	60.395	44.000	0.00	0.00	46.71	1.63
1154	2027	3.526931	ATCAAGGGCGATACCGATATG	57.473	47.619	0.00	0.00	40.62	1.78
1155	2028	1.548719	TCAAGGGCGATACCGATATGG	59.451	52.381	0.00	0.00	46.41	2.74
1156	2029	1.548719	CAAGGGCGATACCGATATGGA	59.451	52.381	0.00	0.00	42.00	3.41
1168	2041	1.580845	GATATGGATGCGCACCTGCC	61.581	60.000	14.90	13.05	37.91	4.85
1301	2175	4.430765	CCGACTCGTCAACCCCGG	62.431	72.222	0.00	0.00	0.00	5.73
1533	2410	3.129502	CGTCCTCGCGACCACCTA	61.130	66.667	3.71	0.00	38.36	3.08
2211	3100	1.903404	GGCACCAAGTCCACAAGGG	60.903	63.158	0.00	0.00	34.83	3.95
2304	3193	1.078848	CCTTTGCTCCGTCTCCCAG	60.079	63.158	0.00	0.00	0.00	4.45
2368	3257	4.020218	AGTCTACAACTGCTATCCTTTGCA	60.020	41.667	0.00	0.00	36.65	4.08
2638	3527	6.258160	GTGTGATACTGCCATTGATAACAAC	58.742	40.000	0.00	0.00	38.90	3.32
2645	3534	6.551736	ACTGCCATTGATAACAACGTAAATC	58.448	36.000	0.00	0.00	38.90	2.17
2650	3539	7.244898	CCATTGATAACAACGTAAATCCGAAA	58.755	34.615	0.00	0.00	38.90	3.46
2656	3545	9.550811	GATAACAACGTAAATCCGAAAGAATTT	57.449	29.630	0.00	0.00	43.98	1.82
2882	3771	1.620822	ACATCTTGTGGAAGTTGCCC	58.379	50.000	0.00	0.00	33.72	5.36
3076	3968	3.449746	AAAGCTATTGGGGCAACTGTA	57.550	42.857	0.00	0.00	0.00	2.74
3091	3983	0.745845	CTGTAGGTCATGTGCAGCCC	60.746	60.000	0.00	0.00	0.00	5.19
3130	4022	4.005650	TGGTGATGCTTGATGAAGAGTTC	58.994	43.478	0.00	0.00	0.00	3.01
3180	4072	0.804989	GGTGCAACTGTAGGTCATGC	59.195	55.000	0.00	0.00	36.74	4.06
3252	4144	0.251297	TCAGTGGGCAAGGAACATGG	60.251	55.000	0.00	0.00	0.00	3.66
3340	4232	6.831976	ACAATCAGATACCCTTATGGAAGAC	58.168	40.000	0.00	0.00	38.00	3.01
3345	4237	2.789409	ACCCTTATGGAAGACTGCAC	57.211	50.000	0.00	0.00	38.00	4.57
3466	4358	2.098770	GCTAATGCAGCCTTCCTTTCTG	59.901	50.000	0.00	0.00	45.23	3.02
3474	4366	5.186198	GCAGCCTTCCTTTCTGTTATCTTA	58.814	41.667	0.00	0.00	0.00	2.10
3477	4369	7.148000	GCAGCCTTCCTTTCTGTTATCTTAAAT	60.148	37.037	0.00	0.00	0.00	1.40
3541	4433	1.522668	TGCAAATCCTGAACTGGTCG	58.477	50.000	0.00	0.00	0.00	4.79
3821	4716	1.594331	AAAACCTGAGGCGTGACTTC	58.406	50.000	0.00	0.00	0.00	3.01
3914	4809	1.032114	GTTCCTTGGGCCCTTCATCG	61.032	60.000	25.70	4.38	0.00	3.84
4065	4964	1.296715	GGTCGGCACCTCTTGATGT	59.703	57.895	0.00	0.00	40.00	3.06
4072	4971	0.603707	CACCTCTTGATGTGTGCGGT	60.604	55.000	0.00	0.00	0.00	5.68
4074	4973	1.354337	CCTCTTGATGTGTGCGGTCG	61.354	60.000	0.00	0.00	0.00	4.79
4104	5004	2.462125	TTAGCGCTGCCCACATGACA	62.462	55.000	22.90	0.00	0.00	3.58
4105	5005	4.107051	GCGCTGCCCACATGACAC	62.107	66.667	0.00	0.00	0.00	3.67
4119	5019	5.645067	CCACATGACACAGTGAAGTTCATAT	59.355	40.000	9.18	0.00	37.97	1.78
4159	5059	4.023963	TCTCAGAACCGAATATACTCGCAG	60.024	45.833	0.00	0.00	37.51	5.18
4160	5060	3.004419	TCAGAACCGAATATACTCGCAGG	59.996	47.826	0.00	0.00	37.51	4.85
4263	5163	5.934625	GCACAAAGGAGAGTTAATTCTGAGA	59.065	40.000	5.06	0.00	0.00	3.27
4321	5221	6.378280	TCTGTAGTTCTGTGATCTGCTTGATA	59.622	38.462	0.00	0.00	35.14	2.15
4380	5280	5.623824	GCCTTTCATGCATGAGAAATCAAGT	60.624	40.000	27.25	0.00	38.19	3.16
4384	5284	4.095932	TCATGCATGAGAAATCAAGTGCTC	59.904	41.667	25.42	0.00	33.95	4.26
4396	5296	4.120792	TCAAGTGCTCTATGCTGAGAAG	57.879	45.455	6.22	0.00	43.37	2.85
4552	5459	8.352942	GTTCTGTTGTATTTGTGAAATTCTCCT	58.647	33.333	0.00	0.00	32.38	3.69
5123	7523	3.743521	TGATTGTTGAAGAGGTCCACTG	58.256	45.455	0.00	0.00	0.00	3.66
5208	7608	7.338800	AGCACCATTTTTGGATTAGATACAG	57.661	36.000	0.00	0.00	0.00	2.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
146	147	1.369091	CTTGCCCCCGATTGAAGTCG	61.369	60.000	0.00	0.00	41.13	4.18
214	215	8.391699	ACCATGGATTATGAGATTCATCAGAAT	58.608	33.333	21.47	0.00	42.28	2.40
292	293	5.391310	CCGTCAACTTCCATGATTTCTTCAG	60.391	44.000	0.00	0.00	37.89	3.02
519	520	2.766263	TGAACCTGAGCTTACCGATCAT	59.234	45.455	0.00	0.00	37.42	2.45
633	634	0.839277	CATGGGTGCTGGACTGGATA	59.161	55.000	0.00	0.00	0.00	2.59
773	774	1.039233	ATGCTTTGGGCCAATCCTCG	61.039	55.000	21.65	7.63	40.92	4.63
836	837	2.510691	TAGTTGCTTAGCGGGCGC	60.511	61.111	0.00	0.00	42.33	6.53
837	838	0.459585	TTCTAGTTGCTTAGCGGGCG	60.460	55.000	0.00	0.00	0.00	6.13
838	839	1.007580	GTTCTAGTTGCTTAGCGGGC	58.992	55.000	0.00	0.00	0.00	6.13
839	840	2.674796	AGTTCTAGTTGCTTAGCGGG	57.325	50.000	0.00	0.00	0.00	6.13
840	841	3.491267	GCATAGTTCTAGTTGCTTAGCGG	59.509	47.826	0.00	0.00	32.41	5.52
841	842	4.112634	TGCATAGTTCTAGTTGCTTAGCG	58.887	43.478	0.00	0.00	36.10	4.26
842	843	5.007136	CCTTGCATAGTTCTAGTTGCTTAGC	59.993	44.000	0.00	0.00	36.10	3.09
843	844	5.525378	CCCTTGCATAGTTCTAGTTGCTTAG	59.475	44.000	0.00	5.00	36.10	2.18
844	845	5.188948	TCCCTTGCATAGTTCTAGTTGCTTA	59.811	40.000	0.00	0.00	36.10	3.09
905	906	2.639327	GCTTGCTTTGCCGGTGGAT	61.639	57.895	1.90	0.00	0.00	3.41
921	922	1.198759	TTTAGAAGCGTCCTGGGGCT	61.199	55.000	7.26	7.26	42.33	5.19
990	991	5.360144	CCCCGGATCATATAGAAATCTACGT	59.640	44.000	0.73	0.00	0.00	3.57
991	992	5.736492	GCCCCGGATCATATAGAAATCTACG	60.736	48.000	0.73	0.00	0.00	3.51
1000	1009	2.695666	CCTGTAGCCCCGGATCATATAG	59.304	54.545	0.73	0.00	0.00	1.31
1013	1022	5.515797	AAAAACTCTTTTGACCTGTAGCC	57.484	39.130	0.00	0.00	33.39	3.93
1138	2011	1.757118	CATCCATATCGGTATCGCCCT	59.243	52.381	0.00	0.00	36.13	5.19
1147	2020	1.004560	AGGTGCGCATCCATATCGG	60.005	57.895	19.01	0.00	0.00	4.18
1148	2021	1.904852	GCAGGTGCGCATCCATATCG	61.905	60.000	19.01	7.37	0.00	2.92
1149	2022	1.580845	GGCAGGTGCGCATCCATATC	61.581	60.000	19.01	0.00	43.26	1.63
1150	2023	1.601759	GGCAGGTGCGCATCCATAT	60.602	57.895	19.01	0.00	43.26	1.78
1151	2024	2.203195	GGCAGGTGCGCATCCATA	60.203	61.111	19.01	0.00	43.26	2.74
1168	2041	0.405585	TTCTGGGCTTTGAGGAAGGG	59.594	55.000	0.00	0.00	35.82	3.95
1171	2044	0.112412	GGGTTCTGGGCTTTGAGGAA	59.888	55.000	0.00	0.00	0.00	3.36
1246	2120	1.536943	GGACAGCGGACTCTTGGACT	61.537	60.000	0.00	0.00	0.00	3.85
1755	2632	2.347322	GGTCTCTGGCTGTCGCTCT	61.347	63.158	0.00	0.00	36.09	4.09
2211	3100	6.603201	TCTGTGAAGATTTATGGGGTCAATTC	59.397	38.462	0.00	0.00	0.00	2.17
2304	3193	2.155279	GAACCCAAGAGCAACTCTTCC	58.845	52.381	6.88	0.00	46.42	3.46
2368	3257	2.537560	GCAAGCACGCAGACACTGT	61.538	57.895	0.00	0.00	33.43	3.55
2638	3527	6.178239	ACAGGAAATTCTTTCGGATTTACG	57.822	37.500	0.00	0.00	40.57	3.18
2645	3534	4.944048	ACCAAAACAGGAAATTCTTTCGG	58.056	39.130	0.00	0.00	40.57	4.30
2650	3539	3.181455	GGCCAACCAAAACAGGAAATTCT	60.181	43.478	0.00	0.00	35.26	2.40
2656	3545	4.286447	GGGCCAACCAAAACAGGA	57.714	55.556	4.39	0.00	39.85	3.86
2871	3760	2.429930	CTGACCGGGCAACTTCCA	59.570	61.111	13.37	0.00	0.00	3.53
2904	3793	4.894784	TCTTACACATCTCAGGGTCAAAC	58.105	43.478	0.00	0.00	0.00	2.93
2907	3796	4.020218	CCTTTCTTACACATCTCAGGGTCA	60.020	45.833	0.00	0.00	0.00	4.02
3076	3968	2.353958	CTGGGCTGCACATGACCT	59.646	61.111	4.43	0.00	0.00	3.85
3091	3983	2.733552	CACCACGATGTCTTCAAGACTG	59.266	50.000	18.49	8.17	45.27	3.51
3130	4022	1.361668	CCTTGCCCACTGATTCGTCG	61.362	60.000	0.00	0.00	0.00	5.12
3180	4072	1.004560	TCCTCAAGACTTGGCTGCG	60.005	57.895	15.13	0.00	0.00	5.18
3196	4088	2.959516	TCACTGATCACAATGACGTCC	58.040	47.619	14.12	0.00	27.07	4.79
3340	4232	0.179048	TCCTGTTGACCACTGTGCAG	60.179	55.000	1.29	3.97	0.00	4.41
3345	4237	1.071385	AGCTCTTCCTGTTGACCACTG	59.929	52.381	0.00	0.00	0.00	3.66
3492	4384	9.851686	ACTGGATTGCAAGAATACATCTTATTA	57.148	29.630	4.94	0.00	46.80	0.98
3508	4400	3.633525	GGATTTGCATCTACTGGATTGCA	59.366	43.478	0.00	0.00	37.00	4.08
3541	4433	6.694877	AAGTGTTTTAGTTGAAACCCTCTC	57.305	37.500	0.00	0.00	38.45	3.20
3570	4465	0.254747	CGGGCCCAATTGGTCTAAGA	59.745	55.000	24.92	0.00	39.39	2.10
3588	4483	3.329386	TCTTTCCTGAGCATCTTTCACG	58.671	45.455	0.00	0.00	34.92	4.35
3821	4716	2.687935	AGCAACAAACCTGTACCAAGTG	59.312	45.455	0.00	0.00	33.45	3.16
3914	4809	3.678056	TTCACCACATGGACAGACTAC	57.322	47.619	4.53	0.00	38.94	2.73
4065	4964	4.994201	GCACGAGACGACCGCACA	62.994	66.667	0.00	0.00	0.00	4.57
4072	4971	1.794785	CGCTAAACGCACGAGACGA	60.795	57.895	0.00	0.00	39.08	4.20
4104	5004	7.066645	CCACATGAATCATATGAACTTCACTGT	59.933	37.037	19.25	19.01	29.18	3.55
4105	5005	7.066645	ACCACATGAATCATATGAACTTCACTG	59.933	37.037	19.25	18.58	29.18	3.66
4119	5019	4.067192	CTGAGACACAACCACATGAATCA	58.933	43.478	0.00	0.00	0.00	2.57
4159	5059	6.599638	AGAAAACCATCTTTGTATCAGTAGCC	59.400	38.462	0.00	0.00	0.00	3.93
4160	5060	7.617041	AGAAAACCATCTTTGTATCAGTAGC	57.383	36.000	0.00	0.00	0.00	3.58
4321	5221	2.373224	GGCCAGCTCTTCATTAAAGCT	58.627	47.619	0.00	0.00	46.98	3.74
4384	5284	3.862267	CGACAGTTTCCTTCTCAGCATAG	59.138	47.826	0.00	0.00	0.00	2.23
4396	5296	5.179045	TCTTATATCCGTCGACAGTTTCC	57.821	43.478	17.16	0.00	0.00	3.13
5123	7523	4.919206	TGTTCATTGTGTCACAACATCAC	58.081	39.130	20.41	14.30	41.40	3.06
5208	7608	6.635030	AAGTGGGATTTACAAGAAAGACAC	57.365	37.500	0.00	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.