Multiple sequence alignment - TraesCS1D01G239900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G239900 chr1D 100.000 3695 0 0 1 3695 329729120 329732814 0.000000e+00 6824.0
1 TraesCS1D01G239900 chr1B 91.174 2436 119 38 865 3247 444686681 444689073 0.000000e+00 3219.0
2 TraesCS1D01G239900 chr1B 94.845 194 6 2 3324 3513 444689072 444689265 2.160000e-77 300.0
3 TraesCS1D01G239900 chr1B 97.810 137 2 1 3560 3695 444689268 444689404 6.170000e-58 235.0
4 TraesCS1D01G239900 chr1B 88.235 170 9 7 8 170 444686336 444686501 3.770000e-45 193.0
5 TraesCS1D01G239900 chr1B 91.000 100 6 2 12 111 668665978 668666074 8.330000e-27 132.0
6 TraesCS1D01G239900 chr1B 91.071 56 3 2 543 597 678067354 678067300 1.420000e-09 75.0
7 TraesCS1D01G239900 chr1A 93.097 1101 50 9 1668 2764 426887571 426888649 0.000000e+00 1589.0
8 TraesCS1D01G239900 chr1A 90.031 642 36 18 585 1208 426886572 426887203 0.000000e+00 806.0
9 TraesCS1D01G239900 chr1A 91.367 417 15 8 2748 3151 426888671 426889079 5.390000e-153 551.0
10 TraesCS1D01G239900 chr1A 96.259 294 10 1 3403 3695 426889280 426889573 7.180000e-132 481.0
11 TraesCS1D01G239900 chr1A 92.562 242 13 3 1375 1614 426887233 426887471 3.530000e-90 342.0
12 TraesCS1D01G239900 chr1A 85.922 206 10 12 1 187 426886217 426886422 6.260000e-48 202.0
13 TraesCS1D01G239900 chr1A 92.593 81 5 1 3168 3247 426889145 426889225 8.390000e-22 115.0
14 TraesCS1D01G239900 chr1A 92.593 54 2 2 541 593 387809585 387809637 3.960000e-10 76.8
15 TraesCS1D01G239900 chr6A 95.161 248 12 0 192 439 76520925 76520678 3.460000e-105 392.0
16 TraesCS1D01G239900 chr3D 95.161 248 12 0 192 439 377738467 377738220 3.460000e-105 392.0
17 TraesCS1D01G239900 chr3D 94.758 248 13 0 192 439 83428549 83428796 1.610000e-103 387.0
18 TraesCS1D01G239900 chr3D 94.048 252 14 1 192 442 407233198 407232947 7.490000e-102 381.0
19 TraesCS1D01G239900 chr3D 92.996 257 18 0 192 448 603703415 603703159 3.480000e-100 375.0
20 TraesCS1D01G239900 chr3D 89.412 85 4 2 3246 3325 411724345 411724429 6.530000e-18 102.0
21 TraesCS1D01G239900 chr3D 88.372 86 7 1 3246 3328 112712676 112712761 2.350000e-17 100.0
22 TraesCS1D01G239900 chr3D 79.675 123 12 9 3246 3366 110398389 110398500 3.960000e-10 76.8
23 TraesCS1D01G239900 chr4D 94.737 247 12 1 194 440 349816074 349816319 2.080000e-102 383.0
24 TraesCS1D01G239900 chr2D 94.378 249 14 0 192 440 204112931 204112683 2.080000e-102 383.0
25 TraesCS1D01G239900 chr2D 89.412 85 3 3 3246 3325 138762682 138762765 6.530000e-18 102.0
26 TraesCS1D01G239900 chr2D 91.228 57 3 2 542 597 643235814 643235869 3.960000e-10 76.8
27 TraesCS1D01G239900 chr7A 94.378 249 13 1 192 440 252742722 252742475 7.490000e-102 381.0
28 TraesCS1D01G239900 chr7A 97.619 42 1 0 553 594 575281061 575281020 5.120000e-09 73.1
29 TraesCS1D01G239900 chr4A 94.048 252 13 2 188 439 622287692 622287941 7.490000e-102 381.0
30 TraesCS1D01G239900 chr5D 90.323 279 19 7 194 468 484708270 484708544 3.510000e-95 359.0
31 TraesCS1D01G239900 chr5D 96.471 85 3 0 15 99 13999750 13999666 1.380000e-29 141.0
32 TraesCS1D01G239900 chr5D 93.617 94 4 2 15 108 13909802 13909893 4.980000e-29 139.0
33 TraesCS1D01G239900 chr5D 96.386 83 2 1 11 92 465039003 465039085 6.440000e-28 135.0
34 TraesCS1D01G239900 chr5D 89.157 83 9 0 3246 3328 61045805 61045887 1.820000e-18 104.0
35 TraesCS1D01G239900 chr5D 89.286 84 6 2 3245 3328 370941288 370941368 6.530000e-18 102.0
36 TraesCS1D01G239900 chr5D 88.060 67 4 4 530 595 61836986 61836923 3.960000e-10 76.8
37 TraesCS1D01G239900 chr5D 94.118 51 2 1 543 593 166628434 166628483 3.960000e-10 76.8
38 TraesCS1D01G239900 chr4B 91.346 104 7 2 7 110 14343322 14343221 1.380000e-29 141.0
39 TraesCS1D01G239900 chr5A 93.478 92 5 1 5 96 585434557 585434647 6.440000e-28 135.0
40 TraesCS1D01G239900 chr5B 93.478 92 2 4 8 97 687215900 687215989 2.320000e-27 134.0
41 TraesCS1D01G239900 chr7D 91.860 86 3 2 3246 3330 177987527 177987445 2.330000e-22 117.0
42 TraesCS1D01G239900 chr7D 90.805 87 4 3 3246 3328 617804874 617804788 3.020000e-21 113.0
43 TraesCS1D01G239900 chr7D 84.112 107 6 7 3245 3342 38011385 38011281 3.930000e-15 93.5
44 TraesCS1D01G239900 chr7D 95.652 46 1 1 553 597 108173829 108173784 5.120000e-09 73.1
45 TraesCS1D01G239900 chr3B 88.764 89 5 3 3240 3325 828548652 828548738 1.820000e-18 104.0
46 TraesCS1D01G239900 chrUn 92.727 55 2 2 544 597 77893555 77893502 1.100000e-10 78.7
47 TraesCS1D01G239900 chr2A 89.831 59 2 3 540 597 28818861 28818806 5.120000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G239900 chr1D 329729120 329732814 3694 False 6824.000000 6824 100.000000 1 3695 1 chr1D.!!$F1 3694
1 TraesCS1D01G239900 chr1B 444686336 444689404 3068 False 986.750000 3219 93.016000 8 3695 4 chr1B.!!$F2 3687
2 TraesCS1D01G239900 chr1A 426886217 426889573 3356 False 583.714286 1589 91.690143 1 3695 7 chr1A.!!$F2 3694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.674269 CCCTACCTGGCGCGTTTTTA 60.674 55.0 8.43 0.0 0.0 1.52 F
1323 1438 0.554792 ATTGGAGGGCAGGGAGATTG 59.445 55.0 0.00 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 2077 0.399833 GGAGGAGAATGCCAGGATCC 59.600 60.0 2.48 2.48 0.0 3.36 R
3309 3585 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.0 0.00 0.00 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.969589 CCCTACCTGGCGCGTTTTT 60.970 57.895 8.43 0.00 0.00 1.94
92 93 0.674269 CCCTACCTGGCGCGTTTTTA 60.674 55.000 8.43 0.00 0.00 1.52
95 96 2.162809 CCTACCTGGCGCGTTTTTATTT 59.837 45.455 8.43 0.00 0.00 1.40
97 98 2.668250 ACCTGGCGCGTTTTTATTTTC 58.332 42.857 8.43 0.00 0.00 2.29
103 104 6.179504 TGGCGCGTTTTTATTTTCTGTATA 57.820 33.333 8.43 0.00 0.00 1.47
172 192 8.839310 TTTTATTTCACAAGAGGAGAAGAGAG 57.161 34.615 0.00 0.00 0.00 3.20
187 207 6.406065 GGAGAAGAGAGGGTATGAACAAGTAC 60.406 46.154 0.00 0.00 0.00 2.73
188 208 6.257586 AGAAGAGAGGGTATGAACAAGTACT 58.742 40.000 0.00 0.00 0.00 2.73
189 209 6.726764 AGAAGAGAGGGTATGAACAAGTACTT 59.273 38.462 1.12 1.12 0.00 2.24
190 210 6.532988 AGAGAGGGTATGAACAAGTACTTC 57.467 41.667 4.77 0.00 0.00 3.01
191 211 6.257586 AGAGAGGGTATGAACAAGTACTTCT 58.742 40.000 4.77 0.00 0.00 2.85
192 212 6.378848 AGAGAGGGTATGAACAAGTACTTCTC 59.621 42.308 4.77 6.23 34.93 2.87
193 213 6.257586 AGAGGGTATGAACAAGTACTTCTCT 58.742 40.000 4.77 8.33 32.39 3.10
194 214 6.726764 AGAGGGTATGAACAAGTACTTCTCTT 59.273 38.462 4.77 6.52 32.84 2.85
195 215 7.235812 AGAGGGTATGAACAAGTACTTCTCTTT 59.764 37.037 4.77 0.00 32.84 2.52
196 216 7.746703 AGGGTATGAACAAGTACTTCTCTTTT 58.253 34.615 4.77 0.00 0.00 2.27
197 217 8.218488 AGGGTATGAACAAGTACTTCTCTTTTT 58.782 33.333 4.77 0.00 0.00 1.94
198 218 9.498176 GGGTATGAACAAGTACTTCTCTTTTTA 57.502 33.333 4.77 0.00 0.00 1.52
202 222 8.658499 TGAACAAGTACTTCTCTTTTTAGTCC 57.342 34.615 4.77 0.00 0.00 3.85
203 223 7.437267 TGAACAAGTACTTCTCTTTTTAGTCCG 59.563 37.037 4.77 0.00 0.00 4.79
204 224 5.695363 ACAAGTACTTCTCTTTTTAGTCCGC 59.305 40.000 4.77 0.00 0.00 5.54
205 225 5.464030 AGTACTTCTCTTTTTAGTCCGCA 57.536 39.130 0.00 0.00 0.00 5.69
206 226 6.038997 AGTACTTCTCTTTTTAGTCCGCAT 57.961 37.500 0.00 0.00 0.00 4.73
207 227 7.166691 AGTACTTCTCTTTTTAGTCCGCATA 57.833 36.000 0.00 0.00 0.00 3.14
208 228 7.783042 AGTACTTCTCTTTTTAGTCCGCATAT 58.217 34.615 0.00 0.00 0.00 1.78
209 229 8.910944 AGTACTTCTCTTTTTAGTCCGCATATA 58.089 33.333 0.00 0.00 0.00 0.86
210 230 9.525409 GTACTTCTCTTTTTAGTCCGCATATAA 57.475 33.333 0.00 0.00 0.00 0.98
211 231 8.649973 ACTTCTCTTTTTAGTCCGCATATAAG 57.350 34.615 0.00 0.00 0.00 1.73
212 232 8.258708 ACTTCTCTTTTTAGTCCGCATATAAGT 58.741 33.333 0.00 0.00 0.00 2.24
213 233 9.099454 CTTCTCTTTTTAGTCCGCATATAAGTT 57.901 33.333 0.00 0.00 0.00 2.66
214 234 9.444600 TTCTCTTTTTAGTCCGCATATAAGTTT 57.555 29.630 0.00 0.00 0.00 2.66
215 235 9.444600 TCTCTTTTTAGTCCGCATATAAGTTTT 57.555 29.630 0.00 0.00 0.00 2.43
216 236 9.490663 CTCTTTTTAGTCCGCATATAAGTTTTG 57.509 33.333 0.00 0.00 0.00 2.44
217 237 8.455682 TCTTTTTAGTCCGCATATAAGTTTTGG 58.544 33.333 0.00 0.00 0.00 3.28
218 238 7.690952 TTTTAGTCCGCATATAAGTTTTGGT 57.309 32.000 0.00 0.00 0.00 3.67
219 239 6.913873 TTAGTCCGCATATAAGTTTTGGTC 57.086 37.500 0.00 0.00 0.00 4.02
220 240 4.839121 AGTCCGCATATAAGTTTTGGTCA 58.161 39.130 0.00 0.00 0.00 4.02
221 241 5.250200 AGTCCGCATATAAGTTTTGGTCAA 58.750 37.500 0.00 0.00 0.00 3.18
222 242 5.708230 AGTCCGCATATAAGTTTTGGTCAAA 59.292 36.000 0.00 0.00 0.00 2.69
223 243 6.027749 GTCCGCATATAAGTTTTGGTCAAAG 58.972 40.000 0.00 0.00 0.00 2.77
224 244 5.708230 TCCGCATATAAGTTTTGGTCAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
225 245 6.027749 CCGCATATAAGTTTTGGTCAAAGTC 58.972 40.000 0.00 0.00 0.00 3.01
226 246 6.348950 CCGCATATAAGTTTTGGTCAAAGTCA 60.349 38.462 0.00 0.00 0.00 3.41
227 247 7.081349 CGCATATAAGTTTTGGTCAAAGTCAA 58.919 34.615 0.00 0.00 0.00 3.18
228 248 7.271223 CGCATATAAGTTTTGGTCAAAGTCAAG 59.729 37.037 0.00 0.00 0.00 3.02
229 249 7.062255 GCATATAAGTTTTGGTCAAAGTCAAGC 59.938 37.037 0.00 0.00 0.00 4.01
230 250 6.715347 ATAAGTTTTGGTCAAAGTCAAGCT 57.285 33.333 0.00 0.00 0.00 3.74
231 251 5.405935 AAGTTTTGGTCAAAGTCAAGCTT 57.594 34.783 0.00 0.00 39.52 3.74
244 264 5.993106 AGTCAAGCTTTGTAGAGTTTCAC 57.007 39.130 0.00 0.00 0.00 3.18
245 265 5.675538 AGTCAAGCTTTGTAGAGTTTCACT 58.324 37.500 0.00 0.00 0.00 3.41
246 266 6.817184 AGTCAAGCTTTGTAGAGTTTCACTA 58.183 36.000 0.00 0.00 0.00 2.74
247 267 7.272978 AGTCAAGCTTTGTAGAGTTTCACTAA 58.727 34.615 0.00 0.00 0.00 2.24
248 268 7.224949 AGTCAAGCTTTGTAGAGTTTCACTAAC 59.775 37.037 0.00 0.00 36.99 2.34
250 270 7.769044 TCAAGCTTTGTAGAGTTTCACTAACTT 59.231 33.333 0.00 0.00 47.00 2.66
251 271 8.398665 CAAGCTTTGTAGAGTTTCACTAACTTT 58.601 33.333 0.00 0.00 47.00 2.66
252 272 9.609346 AAGCTTTGTAGAGTTTCACTAACTTTA 57.391 29.630 0.00 0.00 47.00 1.85
253 273 9.780186 AGCTTTGTAGAGTTTCACTAACTTTAT 57.220 29.630 0.00 0.00 47.00 1.40
305 325 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
306 326 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
307 327 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
308 328 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
309 329 9.475620 AATCAATATTATCAGATGCACCATGAT 57.524 29.630 13.01 13.01 37.44 2.45
311 331 9.387257 TCAATATTATCAGATGCACCATGATAC 57.613 33.333 13.92 0.00 36.05 2.24
312 332 9.169592 CAATATTATCAGATGCACCATGATACA 57.830 33.333 13.92 8.01 36.05 2.29
313 333 9.916360 AATATTATCAGATGCACCATGATACAT 57.084 29.630 13.92 12.77 36.05 2.29
314 334 9.916360 ATATTATCAGATGCACCATGATACATT 57.084 29.630 13.92 7.50 36.05 2.71
315 335 8.645814 ATTATCAGATGCACCATGATACATTT 57.354 30.769 13.92 2.06 36.05 2.32
316 336 6.971726 ATCAGATGCACCATGATACATTTT 57.028 33.333 8.05 0.00 32.01 1.82
317 337 6.778834 TCAGATGCACCATGATACATTTTT 57.221 33.333 0.00 0.00 0.00 1.94
399 419 9.868277 TCAAAATTTGTGTAGTTTGACTTTGAT 57.132 25.926 5.56 0.00 35.60 2.57
401 421 9.868277 AAAATTTGTGTAGTTTGACTTTGATCA 57.132 25.926 0.00 0.00 0.00 2.92
402 422 9.868277 AAATTTGTGTAGTTTGACTTTGATCAA 57.132 25.926 3.38 3.38 36.80 2.57
403 423 9.868277 AATTTGTGTAGTTTGACTTTGATCAAA 57.132 25.926 19.45 19.45 44.40 2.69
414 434 9.720667 TTTGACTTTGATCAAATCTTATATGCG 57.279 29.630 20.76 8.05 42.32 4.73
415 435 7.864686 TGACTTTGATCAAATCTTATATGCGG 58.135 34.615 20.76 7.58 0.00 5.69
416 436 7.714813 TGACTTTGATCAAATCTTATATGCGGA 59.285 33.333 20.76 0.00 0.00 5.54
417 437 8.092521 ACTTTGATCAAATCTTATATGCGGAG 57.907 34.615 20.76 6.87 0.00 4.63
418 438 7.716998 ACTTTGATCAAATCTTATATGCGGAGT 59.283 33.333 20.76 7.49 0.00 3.85
419 439 7.658179 TTGATCAAATCTTATATGCGGAGTC 57.342 36.000 5.45 0.00 0.00 3.36
420 440 6.758254 TGATCAAATCTTATATGCGGAGTCA 58.242 36.000 0.00 0.00 0.00 3.41
421 441 7.216494 TGATCAAATCTTATATGCGGAGTCAA 58.784 34.615 0.00 0.00 0.00 3.18
422 442 7.714813 TGATCAAATCTTATATGCGGAGTCAAA 59.285 33.333 0.00 0.00 0.00 2.69
423 443 7.857734 TCAAATCTTATATGCGGAGTCAAAA 57.142 32.000 0.00 0.00 0.00 2.44
424 444 7.919690 TCAAATCTTATATGCGGAGTCAAAAG 58.080 34.615 0.00 0.00 0.00 2.27
425 445 7.768582 TCAAATCTTATATGCGGAGTCAAAAGA 59.231 33.333 0.00 0.00 0.00 2.52
426 446 8.397906 CAAATCTTATATGCGGAGTCAAAAGAA 58.602 33.333 0.00 0.00 0.00 2.52
427 447 8.506168 AATCTTATATGCGGAGTCAAAAGAAA 57.494 30.769 0.00 0.00 0.00 2.52
428 448 8.682936 ATCTTATATGCGGAGTCAAAAGAAAT 57.317 30.769 0.00 0.00 0.00 2.17
429 449 7.919690 TCTTATATGCGGAGTCAAAAGAAATG 58.080 34.615 0.00 0.00 0.00 2.32
430 450 3.855689 ATGCGGAGTCAAAAGAAATGG 57.144 42.857 0.00 0.00 0.00 3.16
431 451 2.857483 TGCGGAGTCAAAAGAAATGGA 58.143 42.857 0.00 0.00 0.00 3.41
432 452 2.813754 TGCGGAGTCAAAAGAAATGGAG 59.186 45.455 0.00 0.00 0.00 3.86
433 453 2.162408 GCGGAGTCAAAAGAAATGGAGG 59.838 50.000 0.00 0.00 0.00 4.30
434 454 2.749621 CGGAGTCAAAAGAAATGGAGGG 59.250 50.000 0.00 0.00 0.00 4.30
435 455 3.559171 CGGAGTCAAAAGAAATGGAGGGA 60.559 47.826 0.00 0.00 0.00 4.20
436 456 4.013050 GGAGTCAAAAGAAATGGAGGGAG 58.987 47.826 0.00 0.00 0.00 4.30
437 457 4.507512 GGAGTCAAAAGAAATGGAGGGAGT 60.508 45.833 0.00 0.00 0.00 3.85
438 458 5.280521 GGAGTCAAAAGAAATGGAGGGAGTA 60.281 44.000 0.00 0.00 0.00 2.59
451 471 5.989477 TGGAGGGAGTATGAAACATGTAAG 58.011 41.667 0.00 0.00 0.00 2.34
476 501 8.470805 AGAAGTGTGTAAATGATACTCCTACTG 58.529 37.037 0.00 0.00 0.00 2.74
519 602 4.778213 TCCAATAAGAAGATGGTGAGGG 57.222 45.455 0.00 0.00 35.66 4.30
535 618 4.263331 GGTGAGGGGAAGTCTGAAAATACA 60.263 45.833 0.00 0.00 0.00 2.29
540 624 5.070685 GGGGAAGTCTGAAAATACACAAGT 58.929 41.667 0.00 0.00 0.00 3.16
558 642 8.699283 ACACAAGTTCTAAATACGATACTTCC 57.301 34.615 0.00 0.00 0.00 3.46
560 644 9.021863 CACAAGTTCTAAATACGATACTTCCTC 57.978 37.037 0.00 0.00 0.00 3.71
561 645 8.196103 ACAAGTTCTAAATACGATACTTCCTCC 58.804 37.037 0.00 0.00 0.00 4.30
562 646 6.968250 AGTTCTAAATACGATACTTCCTCCG 58.032 40.000 0.00 0.00 0.00 4.63
563 647 6.545298 AGTTCTAAATACGATACTTCCTCCGT 59.455 38.462 0.00 0.00 38.82 4.69
564 648 7.716998 AGTTCTAAATACGATACTTCCTCCGTA 59.283 37.037 0.00 0.00 40.95 4.02
565 649 8.345565 GTTCTAAATACGATACTTCCTCCGTAA 58.654 37.037 0.00 0.00 40.24 3.18
566 650 8.450578 TCTAAATACGATACTTCCTCCGTAAA 57.549 34.615 0.00 0.00 40.24 2.01
567 651 8.562892 TCTAAATACGATACTTCCTCCGTAAAG 58.437 37.037 0.00 0.00 40.24 1.85
568 652 6.949352 AATACGATACTTCCTCCGTAAAGA 57.051 37.500 0.00 0.00 40.24 2.52
569 653 6.949352 ATACGATACTTCCTCCGTAAAGAA 57.051 37.500 0.00 0.00 40.24 2.52
570 654 5.649782 ACGATACTTCCTCCGTAAAGAAA 57.350 39.130 0.00 0.00 33.13 2.52
571 655 6.218108 ACGATACTTCCTCCGTAAAGAAAT 57.782 37.500 0.00 0.00 33.13 2.17
572 656 7.338800 ACGATACTTCCTCCGTAAAGAAATA 57.661 36.000 0.00 0.00 33.13 1.40
573 657 7.949434 ACGATACTTCCTCCGTAAAGAAATAT 58.051 34.615 0.00 0.00 33.13 1.28
574 658 9.071276 ACGATACTTCCTCCGTAAAGAAATATA 57.929 33.333 0.00 0.00 33.13 0.86
575 659 9.903682 CGATACTTCCTCCGTAAAGAAATATAA 57.096 33.333 0.00 0.00 0.00 0.98
579 663 7.927092 ACTTCCTCCGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 0.00 4.09
580 664 7.356089 TCCTCCGTAAAGAAATATAAGAGCA 57.644 36.000 0.00 0.00 0.00 4.26
581 665 7.963532 TCCTCCGTAAAGAAATATAAGAGCAT 58.036 34.615 0.00 0.00 0.00 3.79
582 666 8.429641 TCCTCCGTAAAGAAATATAAGAGCATT 58.570 33.333 0.00 0.00 0.00 3.56
583 667 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
603 687 6.291849 GCATTTAGATCACTAAGTACAGTGCG 60.292 42.308 8.18 0.00 44.62 5.34
619 703 1.742880 GCGGCATGAGCAAGTCTGA 60.743 57.895 0.00 0.00 44.61 3.27
627 711 5.105997 GGCATGAGCAAGTCTGAAAAATAGT 60.106 40.000 0.00 0.00 44.61 2.12
638 722 4.826733 TCTGAAAAATAGTTGAGGCAAGCA 59.173 37.500 0.00 0.00 0.00 3.91
666 750 7.900782 ACTTAAGAATTATTACAGCGTGTGT 57.099 32.000 10.09 0.00 43.86 3.72
673 757 9.811995 AGAATTATTACAGCGTGTGTTATAAGA 57.188 29.630 13.30 0.00 41.57 2.10
679 763 3.303495 CAGCGTGTGTTATAAGACGGAAG 59.697 47.826 8.11 1.45 32.45 3.46
681 765 3.922240 GCGTGTGTTATAAGACGGAAGAA 59.078 43.478 8.11 0.00 32.45 2.52
686 770 6.817140 GTGTGTTATAAGACGGAAGAAGGAAT 59.183 38.462 8.11 0.00 0.00 3.01
693 777 8.894768 ATAAGACGGAAGAAGGAATAATTCAG 57.105 34.615 0.00 0.00 0.00 3.02
696 780 7.266400 AGACGGAAGAAGGAATAATTCAGTAC 58.734 38.462 0.00 0.00 31.65 2.73
697 781 7.124448 AGACGGAAGAAGGAATAATTCAGTACT 59.876 37.037 0.00 0.00 31.65 2.73
698 782 8.302515 ACGGAAGAAGGAATAATTCAGTACTA 57.697 34.615 0.00 0.00 30.09 1.82
699 783 8.414778 ACGGAAGAAGGAATAATTCAGTACTAG 58.585 37.037 0.00 0.00 30.09 2.57
700 784 8.414778 CGGAAGAAGGAATAATTCAGTACTAGT 58.585 37.037 0.00 0.00 0.00 2.57
714 798 9.893975 ATTCAGTACTAGTATTATTACCCACCT 57.106 33.333 5.75 0.00 0.00 4.00
736 820 7.442062 CACCTTTTTCCAGCAAACAAATCTAAT 59.558 33.333 0.00 0.00 0.00 1.73
744 828 7.669722 TCCAGCAAACAAATCTAATTACCTCTT 59.330 33.333 0.00 0.00 0.00 2.85
804 888 1.330655 CCCCTCGCATGACCTGTACT 61.331 60.000 0.00 0.00 0.00 2.73
805 889 1.399714 CCCTCGCATGACCTGTACTA 58.600 55.000 0.00 0.00 0.00 1.82
806 890 1.067212 CCCTCGCATGACCTGTACTAC 59.933 57.143 0.00 0.00 0.00 2.73
807 891 1.268589 CCTCGCATGACCTGTACTACG 60.269 57.143 0.00 0.00 0.00 3.51
827 911 1.134401 GCAACATCAGCCAGGCTACTA 60.134 52.381 15.64 2.81 36.40 1.82
828 912 2.555199 CAACATCAGCCAGGCTACTAC 58.445 52.381 15.64 0.00 36.40 2.73
830 914 1.343478 ACATCAGCCAGGCTACTACCT 60.343 52.381 15.64 0.00 42.30 3.08
831 915 2.091278 ACATCAGCCAGGCTACTACCTA 60.091 50.000 15.64 0.00 38.26 3.08
849 939 7.506971 ACTACCTAATTACAAGCTGGATAACC 58.493 38.462 0.00 0.00 0.00 2.85
870 960 3.427503 CCGTGGCACCATTAAAACTCATC 60.428 47.826 12.86 0.00 0.00 2.92
874 964 4.218200 TGGCACCATTAAAACTCATCACTG 59.782 41.667 0.00 0.00 0.00 3.66
939 1031 3.476181 GCGAAACACACGAGGAAATAAC 58.524 45.455 0.00 0.00 0.00 1.89
945 1037 2.858344 CACACGAGGAAATAACTAGGCG 59.142 50.000 0.00 0.00 0.00 5.52
1086 1187 2.035155 TTCTCCTCGGCTCCACGA 59.965 61.111 0.00 0.00 41.13 4.35
1095 1196 3.119096 GCTCCACGAACGGGAAGC 61.119 66.667 0.00 0.00 33.11 3.86
1150 1251 2.123854 CCTCCATCTCGGTCCCGA 60.124 66.667 8.34 8.34 46.87 5.14
1176 1277 2.669240 CCTTCCCCAACCGAGGAC 59.331 66.667 0.00 0.00 0.00 3.85
1211 1312 3.891366 AGAAAAGCAGTGCAAGGTACAAT 59.109 39.130 19.20 0.00 0.00 2.71
1221 1330 5.030295 GTGCAAGGTACAATGATTCAATCG 58.970 41.667 0.00 0.00 0.00 3.34
1229 1338 7.280205 AGGTACAATGATTCAATCGAGTTTACC 59.720 37.037 0.00 6.81 0.00 2.85
1253 1362 2.737252 GTTTTTGTAGCTCTCCTGGTCG 59.263 50.000 0.00 0.00 0.00 4.79
1258 1367 2.303175 GTAGCTCTCCTGGTCGATTCT 58.697 52.381 0.00 0.00 0.00 2.40
1263 1372 2.675348 CTCTCCTGGTCGATTCTTTTGC 59.325 50.000 0.00 0.00 0.00 3.68
1267 1376 2.337583 CTGGTCGATTCTTTTGCGAGA 58.662 47.619 0.00 0.00 34.41 4.04
1273 1382 2.286067 CGATTCTTTTGCGAGATGGCTC 60.286 50.000 0.00 0.00 37.81 4.70
1298 1413 6.237279 CGAGTCTGTTTTGTTGTTGTCATTTG 60.237 38.462 0.00 0.00 0.00 2.32
1319 1434 1.942776 AAAAATTGGAGGGCAGGGAG 58.057 50.000 0.00 0.00 0.00 4.30
1320 1435 1.084018 AAAATTGGAGGGCAGGGAGA 58.916 50.000 0.00 0.00 0.00 3.71
1321 1436 1.312884 AAATTGGAGGGCAGGGAGAT 58.687 50.000 0.00 0.00 0.00 2.75
1322 1437 1.312884 AATTGGAGGGCAGGGAGATT 58.687 50.000 0.00 0.00 0.00 2.40
1323 1438 0.554792 ATTGGAGGGCAGGGAGATTG 59.445 55.000 0.00 0.00 0.00 2.67
1324 1439 1.574526 TTGGAGGGCAGGGAGATTGG 61.575 60.000 0.00 0.00 0.00 3.16
1328 1443 2.003548 GGGCAGGGAGATTGGGAGT 61.004 63.158 0.00 0.00 0.00 3.85
1353 1468 3.056607 GGGACAATGATTGTTCTTGGTGG 60.057 47.826 15.67 0.00 45.52 4.61
1407 1522 2.181426 TGTTGTTGTTTTTCGCTCCG 57.819 45.000 0.00 0.00 0.00 4.63
1422 1537 0.592754 CTCCGACGCGAGAAGAATCC 60.593 60.000 15.93 0.00 30.97 3.01
1484 1601 1.441849 CGCGCTGATCGAGATCCTC 60.442 63.158 5.56 2.07 40.54 3.71
1599 1716 4.081087 TCTCCAGCCACTTCAAGGTAATAC 60.081 45.833 0.00 0.00 0.00 1.89
1619 1739 1.746615 CACCTTCACCTCCATGGCG 60.747 63.158 6.96 0.00 40.22 5.69
1620 1740 1.918293 ACCTTCACCTCCATGGCGA 60.918 57.895 6.96 0.00 40.22 5.54
1621 1741 1.450312 CCTTCACCTCCATGGCGAC 60.450 63.158 6.96 0.00 40.22 5.19
1623 1743 1.903877 CTTCACCTCCATGGCGACCT 61.904 60.000 6.96 0.00 40.22 3.85
1624 1744 1.899437 TTCACCTCCATGGCGACCTC 61.899 60.000 6.96 0.00 40.22 3.85
1626 1746 3.083349 CCTCCATGGCGACCTCCA 61.083 66.667 6.96 0.00 40.97 3.86
1637 1759 1.078759 CGACCTCCATGTGCTTCGTC 61.079 60.000 0.00 0.00 0.00 4.20
1644 1775 2.579657 ATGTGCTTCGTCGTCCCCA 61.580 57.895 0.00 0.00 0.00 4.96
1664 1804 3.192001 CCAGACACCAAAATCTCCATGTG 59.808 47.826 0.00 0.00 0.00 3.21
1665 1805 2.821969 AGACACCAAAATCTCCATGTGC 59.178 45.455 0.00 0.00 0.00 4.57
1666 1806 2.821969 GACACCAAAATCTCCATGTGCT 59.178 45.455 0.00 0.00 0.00 4.40
1751 1914 2.586792 CTCAGGAAGAAGGGCGGG 59.413 66.667 0.00 0.00 0.00 6.13
1932 2095 0.034616 CGGATCCTGGCATTCTCCTC 59.965 60.000 10.75 0.00 0.00 3.71
1934 2097 0.399833 GATCCTGGCATTCTCCTCCC 59.600 60.000 0.00 0.00 0.00 4.30
2028 2195 2.203195 TGCAGTTCTTGGTGCGCT 60.203 55.556 9.73 0.00 42.96 5.92
2046 2213 2.214181 CTTGGTGAGCTCGTACCGCT 62.214 60.000 16.22 4.15 39.87 5.52
2206 2373 0.105964 ACGTTCCAGCACTACAAGCA 59.894 50.000 0.00 0.00 0.00 3.91
2207 2374 0.792640 CGTTCCAGCACTACAAGCAG 59.207 55.000 0.00 0.00 0.00 4.24
2243 2410 3.487711 CCATCGACGAGGTCTACTTTCTG 60.488 52.174 8.86 0.00 0.00 3.02
2299 2467 7.968405 AGAACTGAACACACAAAAATGAACTAC 59.032 33.333 0.00 0.00 0.00 2.73
2304 2472 8.178964 TGAACACACAAAAATGAACTACAGTAC 58.821 33.333 0.00 0.00 0.00 2.73
2364 2532 0.737715 ATCGCAACGACAAGCTCTCC 60.738 55.000 0.00 0.00 39.18 3.71
2379 2547 1.019278 TCTCCGCGATGCTGAAAACC 61.019 55.000 8.23 0.00 0.00 3.27
2403 2571 4.408821 TGGTGCCTGACATCGCCC 62.409 66.667 5.35 1.86 28.88 6.13
2412 2580 1.227380 GACATCGCCCGAGAAGCAT 60.227 57.895 0.00 0.00 0.00 3.79
2631 2803 1.372623 GACGACGGTGACCAAGGAC 60.373 63.158 1.11 0.00 0.00 3.85
2737 2909 1.019673 CGGAGGATGCAGTTCAATGG 58.980 55.000 0.00 0.00 0.00 3.16
2739 2911 0.379669 GAGGATGCAGTTCAATGGCG 59.620 55.000 0.00 0.00 0.00 5.69
2768 2978 2.357009 TGCTACTTAGACCGTTCGATCC 59.643 50.000 0.00 0.00 0.00 3.36
2778 2988 1.067846 CCGTTCGATCCAACAGAGTGA 60.068 52.381 4.06 0.00 0.00 3.41
2792 3002 3.067601 ACAGAGTGACATTGTCGTGTGTA 59.932 43.478 15.82 0.00 34.95 2.90
2793 3003 3.425525 CAGAGTGACATTGTCGTGTGTAC 59.574 47.826 11.97 3.80 34.95 2.90
2794 3004 3.067601 AGAGTGACATTGTCGTGTGTACA 59.932 43.478 11.97 0.00 34.95 2.90
2795 3005 3.787785 AGTGACATTGTCGTGTGTACAA 58.212 40.909 11.97 0.00 40.85 2.41
2796 3006 3.802139 AGTGACATTGTCGTGTGTACAAG 59.198 43.478 11.97 0.00 40.00 3.16
2797 3007 3.554324 GTGACATTGTCGTGTGTACAAGT 59.446 43.478 11.97 0.00 40.00 3.16
2821 3032 6.656632 ACAATCTAGAGAGTGAAGTGTTGA 57.343 37.500 13.53 0.00 42.16 3.18
2840 3051 6.016276 GTGTTGATGTTGTGAAATAAGACCCT 60.016 38.462 0.00 0.00 0.00 4.34
2843 3054 5.476599 TGATGTTGTGAAATAAGACCCTTGG 59.523 40.000 0.00 0.00 0.00 3.61
2906 3120 4.250464 TGGTACTTCCATCACGATTTGAC 58.750 43.478 0.00 0.00 41.93 3.18
3254 3530 9.442047 CAGATAAAATTATCACATACTCCCTCC 57.558 37.037 13.94 0.00 41.52 4.30
3255 3531 8.314751 AGATAAAATTATCACATACTCCCTCCG 58.685 37.037 13.94 0.00 41.52 4.63
3256 3532 5.888982 AAATTATCACATACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
3257 3533 5.470047 AATTATCACATACTCCCTCCGTC 57.530 43.478 0.00 0.00 0.00 4.79
3258 3534 1.705873 ATCACATACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
3259 3535 0.396695 TCACATACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
3260 3536 0.686441 CACATACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
3261 3537 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3262 3538 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
3263 3539 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
3264 3540 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
3265 3541 4.202749 ACATACTCCCTCCGTCCCATAATA 60.203 45.833 0.00 0.00 0.00 0.98
3266 3542 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3267 3543 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3268 3544 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3269 3545 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3270 3546 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3271 3547 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3272 3548 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
3273 3549 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
3274 3550 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
3275 3551 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
3276 3552 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
3277 3553 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
3278 3554 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
3296 3572 3.508648 TTTTACGCTACAACGCTCAAC 57.491 42.857 0.00 0.00 36.19 3.18
3311 3587 5.441700 CGCTCAACGCTCTTATATTATGG 57.558 43.478 0.00 0.00 36.13 2.74
3312 3588 4.327357 CGCTCAACGCTCTTATATTATGGG 59.673 45.833 0.00 0.00 36.13 4.00
3313 3589 5.479306 GCTCAACGCTCTTATATTATGGGA 58.521 41.667 0.00 0.00 35.14 4.37
3314 3590 5.348997 GCTCAACGCTCTTATATTATGGGAC 59.651 44.000 0.00 0.00 35.14 4.46
3315 3591 5.466819 TCAACGCTCTTATATTATGGGACG 58.533 41.667 0.00 0.00 0.00 4.79
3316 3592 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3317 3593 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3318 3594 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3319 3595 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3320 3596 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3321 3597 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3322 3598 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3323 3599 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3324 3600 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3351 3627 7.733773 TTTCTACTGAGGATTGAGGAACATA 57.266 36.000 0.00 0.00 0.00 2.29
3394 3670 6.542370 CCAATGGATCGTAGAAAAGTATGGTT 59.458 38.462 0.00 0.00 43.58 3.67
3486 3776 4.105697 TGGTTGAATCTACAAGAAAGGGGT 59.894 41.667 0.00 0.00 0.00 4.95
3556 3847 4.981674 ACGGTTGAAAAACATATGCACTTG 59.018 37.500 1.58 0.00 27.66 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 9.559958 CCAACTAAGCACAAAAGAAATATACAG 57.440 33.333 0.00 0.00 0.00 2.74
103 104 5.049828 GCACCAACTAAGCACAAAAGAAAT 58.950 37.500 0.00 0.00 0.00 2.17
156 168 4.017037 TCATACCCTCTCTTCTCCTCTTGT 60.017 45.833 0.00 0.00 0.00 3.16
172 192 7.981102 AAAAGAGAAGTACTTGTTCATACCC 57.019 36.000 14.14 0.00 0.00 3.69
187 207 8.649973 ACTTATATGCGGACTAAAAAGAGAAG 57.350 34.615 0.00 0.00 0.00 2.85
188 208 9.444600 AAACTTATATGCGGACTAAAAAGAGAA 57.555 29.630 0.00 0.00 0.00 2.87
189 209 9.444600 AAAACTTATATGCGGACTAAAAAGAGA 57.555 29.630 0.00 0.00 0.00 3.10
190 210 9.490663 CAAAACTTATATGCGGACTAAAAAGAG 57.509 33.333 0.00 0.00 0.00 2.85
191 211 8.455682 CCAAAACTTATATGCGGACTAAAAAGA 58.544 33.333 0.00 0.00 0.00 2.52
192 212 8.241367 ACCAAAACTTATATGCGGACTAAAAAG 58.759 33.333 0.00 0.00 0.00 2.27
193 213 8.113173 ACCAAAACTTATATGCGGACTAAAAA 57.887 30.769 0.00 0.00 0.00 1.94
194 214 7.390996 TGACCAAAACTTATATGCGGACTAAAA 59.609 33.333 0.00 0.00 0.00 1.52
195 215 6.879993 TGACCAAAACTTATATGCGGACTAAA 59.120 34.615 0.00 0.00 0.00 1.85
196 216 6.408035 TGACCAAAACTTATATGCGGACTAA 58.592 36.000 0.00 0.00 0.00 2.24
197 217 5.979993 TGACCAAAACTTATATGCGGACTA 58.020 37.500 0.00 0.00 0.00 2.59
198 218 4.839121 TGACCAAAACTTATATGCGGACT 58.161 39.130 0.00 0.00 0.00 3.85
199 219 5.554822 TTGACCAAAACTTATATGCGGAC 57.445 39.130 0.00 0.00 0.00 4.79
200 220 5.708230 ACTTTGACCAAAACTTATATGCGGA 59.292 36.000 0.00 0.00 0.00 5.54
201 221 5.949735 ACTTTGACCAAAACTTATATGCGG 58.050 37.500 0.00 0.00 0.00 5.69
202 222 6.607689 TGACTTTGACCAAAACTTATATGCG 58.392 36.000 0.00 0.00 0.00 4.73
203 223 7.062255 GCTTGACTTTGACCAAAACTTATATGC 59.938 37.037 0.00 0.00 0.00 3.14
204 224 8.299570 AGCTTGACTTTGACCAAAACTTATATG 58.700 33.333 0.00 0.00 0.00 1.78
205 225 8.409358 AGCTTGACTTTGACCAAAACTTATAT 57.591 30.769 0.00 0.00 0.00 0.86
206 226 7.817418 AGCTTGACTTTGACCAAAACTTATA 57.183 32.000 0.00 0.00 0.00 0.98
207 227 6.715347 AGCTTGACTTTGACCAAAACTTAT 57.285 33.333 0.00 0.00 0.00 1.73
208 228 6.524101 AAGCTTGACTTTGACCAAAACTTA 57.476 33.333 0.00 0.00 33.71 2.24
209 229 5.405935 AAGCTTGACTTTGACCAAAACTT 57.594 34.783 0.00 0.00 33.71 2.66
210 230 5.405935 AAAGCTTGACTTTGACCAAAACT 57.594 34.783 0.00 0.00 47.00 2.66
221 241 6.364945 GTGAAACTCTACAAAGCTTGACTT 57.635 37.500 0.00 0.00 41.70 3.01
222 242 5.993106 GTGAAACTCTACAAAGCTTGACT 57.007 39.130 0.00 0.00 0.00 3.41
279 299 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
280 300 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
281 301 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
282 302 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
283 303 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
285 305 9.387257 GTATCATGGTGCATCTGATAATATTGA 57.613 33.333 16.02 0.86 34.58 2.57
286 306 9.169592 TGTATCATGGTGCATCTGATAATATTG 57.830 33.333 16.02 0.00 34.58 1.90
287 307 9.916360 ATGTATCATGGTGCATCTGATAATATT 57.084 29.630 16.02 0.00 34.58 1.28
288 308 9.916360 AATGTATCATGGTGCATCTGATAATAT 57.084 29.630 10.17 12.29 34.58 1.28
289 309 9.743581 AAATGTATCATGGTGCATCTGATAATA 57.256 29.630 10.17 11.10 34.58 0.98
290 310 8.645814 AAATGTATCATGGTGCATCTGATAAT 57.354 30.769 10.17 11.19 34.58 1.28
291 311 8.467963 AAAATGTATCATGGTGCATCTGATAA 57.532 30.769 10.17 9.99 34.58 1.75
292 312 8.467963 AAAAATGTATCATGGTGCATCTGATA 57.532 30.769 10.17 12.38 32.20 2.15
293 313 6.971726 AAAATGTATCATGGTGCATCTGAT 57.028 33.333 10.17 13.91 34.22 2.90
294 314 6.778834 AAAAATGTATCATGGTGCATCTGA 57.221 33.333 10.17 0.00 0.00 3.27
373 393 9.868277 ATCAAAGTCAAACTACACAAATTTTGA 57.132 25.926 15.81 0.00 35.98 2.69
375 395 9.868277 TGATCAAAGTCAAACTACACAAATTTT 57.132 25.926 0.00 0.00 0.00 1.82
376 396 9.868277 TTGATCAAAGTCAAACTACACAAATTT 57.132 25.926 5.45 0.00 35.31 1.82
377 397 9.868277 TTTGATCAAAGTCAAACTACACAAATT 57.132 25.926 16.91 0.00 41.70 1.82
389 409 8.344831 CCGCATATAAGATTTGATCAAAGTCAA 58.655 33.333 24.17 11.64 36.38 3.18
390 410 7.714813 TCCGCATATAAGATTTGATCAAAGTCA 59.285 33.333 24.17 11.02 33.32 3.41
391 411 8.087982 TCCGCATATAAGATTTGATCAAAGTC 57.912 34.615 24.17 19.70 33.32 3.01
392 412 7.716998 ACTCCGCATATAAGATTTGATCAAAGT 59.283 33.333 24.17 14.86 33.32 2.66
393 413 8.092521 ACTCCGCATATAAGATTTGATCAAAG 57.907 34.615 24.17 10.49 33.32 2.77
394 414 7.714813 TGACTCCGCATATAAGATTTGATCAAA 59.285 33.333 22.52 22.52 34.46 2.69
395 415 7.216494 TGACTCCGCATATAAGATTTGATCAA 58.784 34.615 3.38 3.38 0.00 2.57
396 416 6.758254 TGACTCCGCATATAAGATTTGATCA 58.242 36.000 0.00 0.00 0.00 2.92
397 417 7.658179 TTGACTCCGCATATAAGATTTGATC 57.342 36.000 0.00 0.00 0.00 2.92
398 418 8.450578 TTTTGACTCCGCATATAAGATTTGAT 57.549 30.769 0.00 0.00 0.00 2.57
399 419 7.768582 TCTTTTGACTCCGCATATAAGATTTGA 59.231 33.333 0.00 0.00 0.00 2.69
400 420 7.919690 TCTTTTGACTCCGCATATAAGATTTG 58.080 34.615 0.00 0.00 0.00 2.32
401 421 8.506168 TTCTTTTGACTCCGCATATAAGATTT 57.494 30.769 0.00 0.00 0.00 2.17
402 422 8.506168 TTTCTTTTGACTCCGCATATAAGATT 57.494 30.769 0.00 0.00 0.00 2.40
403 423 8.562892 CATTTCTTTTGACTCCGCATATAAGAT 58.437 33.333 0.00 0.00 0.00 2.40
404 424 7.012327 CCATTTCTTTTGACTCCGCATATAAGA 59.988 37.037 0.00 0.00 0.00 2.10
405 425 7.012327 TCCATTTCTTTTGACTCCGCATATAAG 59.988 37.037 0.00 0.00 0.00 1.73
406 426 6.826231 TCCATTTCTTTTGACTCCGCATATAA 59.174 34.615 0.00 0.00 0.00 0.98
407 427 6.353323 TCCATTTCTTTTGACTCCGCATATA 58.647 36.000 0.00 0.00 0.00 0.86
408 428 5.192927 TCCATTTCTTTTGACTCCGCATAT 58.807 37.500 0.00 0.00 0.00 1.78
409 429 4.584874 TCCATTTCTTTTGACTCCGCATA 58.415 39.130 0.00 0.00 0.00 3.14
410 430 3.420893 TCCATTTCTTTTGACTCCGCAT 58.579 40.909 0.00 0.00 0.00 4.73
411 431 2.813754 CTCCATTTCTTTTGACTCCGCA 59.186 45.455 0.00 0.00 0.00 5.69
412 432 2.162408 CCTCCATTTCTTTTGACTCCGC 59.838 50.000 0.00 0.00 0.00 5.54
413 433 2.749621 CCCTCCATTTCTTTTGACTCCG 59.250 50.000 0.00 0.00 0.00 4.63
414 434 4.013050 CTCCCTCCATTTCTTTTGACTCC 58.987 47.826 0.00 0.00 0.00 3.85
415 435 4.657013 ACTCCCTCCATTTCTTTTGACTC 58.343 43.478 0.00 0.00 0.00 3.36
416 436 4.731313 ACTCCCTCCATTTCTTTTGACT 57.269 40.909 0.00 0.00 0.00 3.41
417 437 6.180472 TCATACTCCCTCCATTTCTTTTGAC 58.820 40.000 0.00 0.00 0.00 3.18
418 438 6.387192 TCATACTCCCTCCATTTCTTTTGA 57.613 37.500 0.00 0.00 0.00 2.69
419 439 7.039784 TGTTTCATACTCCCTCCATTTCTTTTG 60.040 37.037 0.00 0.00 0.00 2.44
420 440 7.010160 TGTTTCATACTCCCTCCATTTCTTTT 58.990 34.615 0.00 0.00 0.00 2.27
421 441 6.552008 TGTTTCATACTCCCTCCATTTCTTT 58.448 36.000 0.00 0.00 0.00 2.52
422 442 6.139679 TGTTTCATACTCCCTCCATTTCTT 57.860 37.500 0.00 0.00 0.00 2.52
423 443 5.779241 TGTTTCATACTCCCTCCATTTCT 57.221 39.130 0.00 0.00 0.00 2.52
424 444 5.888161 ACATGTTTCATACTCCCTCCATTTC 59.112 40.000 0.00 0.00 0.00 2.17
425 445 5.831103 ACATGTTTCATACTCCCTCCATTT 58.169 37.500 0.00 0.00 0.00 2.32
426 446 5.456921 ACATGTTTCATACTCCCTCCATT 57.543 39.130 0.00 0.00 0.00 3.16
427 447 6.386927 TCTTACATGTTTCATACTCCCTCCAT 59.613 38.462 2.30 0.00 0.00 3.41
428 448 5.724370 TCTTACATGTTTCATACTCCCTCCA 59.276 40.000 2.30 0.00 0.00 3.86
429 449 6.235231 TCTTACATGTTTCATACTCCCTCC 57.765 41.667 2.30 0.00 0.00 4.30
430 450 7.278868 CACTTCTTACATGTTTCATACTCCCTC 59.721 40.741 2.30 0.00 0.00 4.30
431 451 7.106239 CACTTCTTACATGTTTCATACTCCCT 58.894 38.462 2.30 0.00 0.00 4.20
432 452 6.879458 ACACTTCTTACATGTTTCATACTCCC 59.121 38.462 2.30 0.00 0.00 4.30
433 453 7.387948 ACACACTTCTTACATGTTTCATACTCC 59.612 37.037 2.30 0.00 0.00 3.85
434 454 8.311650 ACACACTTCTTACATGTTTCATACTC 57.688 34.615 2.30 0.00 0.00 2.59
435 455 9.772973 TTACACACTTCTTACATGTTTCATACT 57.227 29.630 2.30 0.00 0.00 2.12
438 458 9.897744 CATTTACACACTTCTTACATGTTTCAT 57.102 29.630 2.30 0.00 0.00 2.57
451 471 8.467598 TCAGTAGGAGTATCATTTACACACTTC 58.532 37.037 0.00 0.00 36.25 3.01
492 542 5.667172 TCACCATCTTCTTATTGGATCCTGA 59.333 40.000 14.23 1.70 34.52 3.86
497 580 4.105377 CCCCTCACCATCTTCTTATTGGAT 59.895 45.833 0.00 0.00 34.52 3.41
519 602 7.497925 AGAACTTGTGTATTTTCAGACTTCC 57.502 36.000 0.00 0.00 0.00 3.46
535 618 8.196103 GGAGGAAGTATCGTATTTAGAACTTGT 58.804 37.037 0.00 0.00 0.00 3.16
540 624 6.949352 ACGGAGGAAGTATCGTATTTAGAA 57.051 37.500 0.00 0.00 33.89 2.10
549 633 9.903682 TTATATTTCTTTACGGAGGAAGTATCG 57.096 33.333 4.56 0.00 0.00 2.92
556 640 7.356089 TGCTCTTATATTTCTTTACGGAGGA 57.644 36.000 0.00 0.00 0.00 3.71
557 641 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
574 658 8.754080 ACTGTACTTAGTGATCTAAATGCTCTT 58.246 33.333 0.00 0.00 35.98 2.85
575 659 8.299990 ACTGTACTTAGTGATCTAAATGCTCT 57.700 34.615 0.00 0.00 35.98 4.09
589 673 1.548719 TCATGCCGCACTGTACTTAGT 59.451 47.619 0.00 0.00 0.00 2.24
590 674 2.196749 CTCATGCCGCACTGTACTTAG 58.803 52.381 0.00 0.00 0.00 2.18
603 687 3.648339 TTTTTCAGACTTGCTCATGCC 57.352 42.857 0.00 0.00 38.71 4.40
619 703 7.670364 AGTTAATGCTTGCCTCAACTATTTTT 58.330 30.769 0.00 0.00 0.00 1.94
627 711 6.892658 TTCTTAAGTTAATGCTTGCCTCAA 57.107 33.333 1.63 0.00 0.00 3.02
659 743 3.504863 TCTTCCGTCTTATAACACACGC 58.495 45.455 2.62 0.00 0.00 5.34
673 757 7.184067 AGTACTGAATTATTCCTTCTTCCGT 57.816 36.000 2.22 0.00 0.00 4.69
696 780 9.338622 CTGGAAAAAGGTGGGTAATAATACTAG 57.661 37.037 0.00 0.00 32.36 2.57
697 781 7.776500 GCTGGAAAAAGGTGGGTAATAATACTA 59.224 37.037 0.00 0.00 32.36 1.82
698 782 6.605995 GCTGGAAAAAGGTGGGTAATAATACT 59.394 38.462 0.00 0.00 32.36 2.12
699 783 6.378848 TGCTGGAAAAAGGTGGGTAATAATAC 59.621 38.462 0.00 0.00 0.00 1.89
700 784 6.494952 TGCTGGAAAAAGGTGGGTAATAATA 58.505 36.000 0.00 0.00 0.00 0.98
701 785 5.337788 TGCTGGAAAAAGGTGGGTAATAAT 58.662 37.500 0.00 0.00 0.00 1.28
702 786 4.742012 TGCTGGAAAAAGGTGGGTAATAA 58.258 39.130 0.00 0.00 0.00 1.40
709 793 2.977772 TGTTTGCTGGAAAAAGGTGG 57.022 45.000 0.00 0.00 0.00 4.61
714 798 9.267084 GGTAATTAGATTTGTTTGCTGGAAAAA 57.733 29.630 0.00 0.00 0.00 1.94
736 820 9.342308 CCTATTTAATCAGCATTGAAGAGGTAA 57.658 33.333 6.74 0.00 40.04 2.85
744 828 7.503230 TCATTGCTCCTATTTAATCAGCATTGA 59.497 33.333 17.51 17.51 43.21 2.57
758 842 5.387113 TTGGGTATGTTCATTGCTCCTAT 57.613 39.130 0.00 0.00 0.00 2.57
804 888 1.745115 GCCTGGCTGATGTTGCGTA 60.745 57.895 12.43 0.00 0.00 4.42
805 889 2.184020 TAGCCTGGCTGATGTTGCGT 62.184 55.000 30.83 3.04 40.10 5.24
806 890 1.450134 TAGCCTGGCTGATGTTGCG 60.450 57.895 30.83 0.00 40.10 4.85
807 891 0.393537 AGTAGCCTGGCTGATGTTGC 60.394 55.000 30.83 7.40 40.10 4.17
827 911 5.104652 ACGGTTATCCAGCTTGTAATTAGGT 60.105 40.000 0.00 0.00 0.00 3.08
828 912 5.236478 CACGGTTATCCAGCTTGTAATTAGG 59.764 44.000 0.00 0.00 0.00 2.69
830 914 5.120399 CCACGGTTATCCAGCTTGTAATTA 58.880 41.667 0.00 0.00 0.00 1.40
831 915 3.945285 CCACGGTTATCCAGCTTGTAATT 59.055 43.478 0.00 0.00 0.00 1.40
849 939 3.190327 TGATGAGTTTTAATGGTGCCACG 59.810 43.478 0.00 0.00 0.00 4.94
870 960 4.326826 TGGCTCATTTTAGGTTCTCAGTG 58.673 43.478 0.00 0.00 0.00 3.66
874 964 6.575162 TTTCTTGGCTCATTTTAGGTTCTC 57.425 37.500 0.00 0.00 0.00 2.87
1086 1187 1.889530 CTTCTCCCTCGCTTCCCGTT 61.890 60.000 0.00 0.00 38.35 4.44
1095 1196 1.435515 CGCTCCTTCTTCTCCCTCG 59.564 63.158 0.00 0.00 0.00 4.63
1150 1251 4.959460 TGGGGAAGGGGCAGGGTT 62.959 66.667 0.00 0.00 0.00 4.11
1176 1277 1.004504 GCTTTTCTTATGCTCTCCGCG 60.005 52.381 0.00 0.00 43.27 6.46
1179 1280 3.181502 GCACTGCTTTTCTTATGCTCTCC 60.182 47.826 0.00 0.00 0.00 3.71
1221 1330 5.695363 AGAGCTACAAAAACGAGGTAAACTC 59.305 40.000 0.00 0.00 43.02 3.01
1229 1338 2.996621 CCAGGAGAGCTACAAAAACGAG 59.003 50.000 0.00 0.00 0.00 4.18
1253 1362 3.331251 GAGCCATCTCGCAAAAGAATC 57.669 47.619 0.00 0.00 0.00 2.52
1267 1376 2.549754 CAACAAAACAGACTCGAGCCAT 59.450 45.455 13.61 0.00 0.00 4.40
1273 1382 4.335082 TGACAACAACAAAACAGACTCG 57.665 40.909 0.00 0.00 0.00 4.18
1274 1383 6.806249 TCAAATGACAACAACAAAACAGACTC 59.194 34.615 0.00 0.00 0.00 3.36
1305 1420 1.574526 CCAATCTCCCTGCCCTCCAA 61.575 60.000 0.00 0.00 0.00 3.53
1313 1428 1.341383 CCCAAACTCCCAATCTCCCTG 60.341 57.143 0.00 0.00 0.00 4.45
1316 1431 1.354368 TGTCCCAAACTCCCAATCTCC 59.646 52.381 0.00 0.00 0.00 3.71
1317 1432 2.879103 TGTCCCAAACTCCCAATCTC 57.121 50.000 0.00 0.00 0.00 2.75
1318 1433 3.075882 TCATTGTCCCAAACTCCCAATCT 59.924 43.478 0.00 0.00 0.00 2.40
1319 1434 3.430453 TCATTGTCCCAAACTCCCAATC 58.570 45.455 0.00 0.00 0.00 2.67
1320 1435 3.541242 TCATTGTCCCAAACTCCCAAT 57.459 42.857 0.00 0.00 0.00 3.16
1321 1436 3.541242 ATCATTGTCCCAAACTCCCAA 57.459 42.857 0.00 0.00 0.00 4.12
1322 1437 3.164268 CAATCATTGTCCCAAACTCCCA 58.836 45.455 0.00 0.00 0.00 4.37
1323 1438 3.165071 ACAATCATTGTCCCAAACTCCC 58.835 45.455 0.00 0.00 40.56 4.30
1324 1439 4.524328 AGAACAATCATTGTCCCAAACTCC 59.476 41.667 2.74 0.00 44.59 3.85
1328 1443 4.653341 ACCAAGAACAATCATTGTCCCAAA 59.347 37.500 2.74 0.00 44.59 3.28
1407 1522 1.063764 AGTACGGATTCTTCTCGCGTC 59.936 52.381 5.77 0.00 0.00 5.19
1422 1537 3.001330 GCCCATTTCTCGATTTCAGTACG 59.999 47.826 0.00 0.00 0.00 3.67
1599 1716 0.962356 GCCATGGAGGTGAAGGTGTG 60.962 60.000 18.40 0.00 40.61 3.82
1619 1739 1.078759 CGACGAAGCACATGGAGGTC 61.079 60.000 0.00 0.00 0.00 3.85
1620 1740 1.079819 CGACGAAGCACATGGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
1621 1741 1.078759 GACGACGAAGCACATGGAGG 61.079 60.000 0.00 0.00 0.00 4.30
1623 1743 1.080093 GGACGACGAAGCACATGGA 60.080 57.895 0.00 0.00 0.00 3.41
1624 1744 2.100631 GGGACGACGAAGCACATGG 61.101 63.158 0.00 0.00 0.00 3.66
1626 1746 2.264794 GGGGACGACGAAGCACAT 59.735 61.111 0.00 0.00 0.00 3.21
1628 1748 2.432628 CTGGGGACGACGAAGCAC 60.433 66.667 0.00 0.00 0.00 4.40
1629 1749 2.599281 TCTGGGGACGACGAAGCA 60.599 61.111 0.00 0.00 0.00 3.91
1637 1759 1.165270 GATTTTGGTGTCTGGGGACG 58.835 55.000 0.00 0.00 44.83 4.79
1644 1775 2.821969 GCACATGGAGATTTTGGTGTCT 59.178 45.455 0.00 0.00 0.00 3.41
1664 1804 3.567797 GTCATCGCGCCCTGAAGC 61.568 66.667 0.00 0.00 0.00 3.86
1665 1805 3.257561 CGTCATCGCGCCCTGAAG 61.258 66.667 0.00 3.47 0.00 3.02
1724 1887 1.276622 TCTTCCTGAGGGCCTTGTAC 58.723 55.000 7.89 0.00 0.00 2.90
1914 2077 0.399833 GGAGGAGAATGCCAGGATCC 59.600 60.000 2.48 2.48 0.00 3.36
1932 2095 4.398598 CGGCGGCGACAAAAAGGG 62.399 66.667 29.19 0.00 0.00 3.95
1934 2097 2.426752 CACGGCGGCGACAAAAAG 60.427 61.111 38.93 13.55 0.00 2.27
1956 2119 2.589014 CAACGGCAAGAGCAAGAAATC 58.411 47.619 0.00 0.00 44.61 2.17
2148 2315 1.953231 CTCCTGGAGCTGACGATGCA 61.953 60.000 11.42 0.00 0.00 3.96
2243 2410 2.223386 TGTAGAAAAATAATGGCGCCGC 60.223 45.455 23.90 0.00 0.00 6.53
2274 2441 7.753132 TGTAGTTCATTTTTGTGTGTTCAGTTC 59.247 33.333 0.00 0.00 0.00 3.01
2275 2442 7.598278 TGTAGTTCATTTTTGTGTGTTCAGTT 58.402 30.769 0.00 0.00 0.00 3.16
2276 2443 7.094377 ACTGTAGTTCATTTTTGTGTGTTCAGT 60.094 33.333 0.00 0.00 0.00 3.41
2291 2458 9.042008 CGCATAAAAATAGGTACTGTAGTTCAT 57.958 33.333 0.00 0.00 41.52 2.57
2292 2459 7.010738 GCGCATAAAAATAGGTACTGTAGTTCA 59.989 37.037 0.30 0.00 41.52 3.18
2293 2460 7.342942 GCGCATAAAAATAGGTACTGTAGTTC 58.657 38.462 0.30 0.00 41.52 3.01
2299 2467 3.606153 GCGGCGCATAAAAATAGGTACTG 60.606 47.826 29.21 0.00 41.52 2.74
2304 2472 2.483583 TTGCGGCGCATAAAAATAGG 57.516 45.000 36.69 0.00 38.76 2.57
2364 2532 2.574212 GCGGTTTTCAGCATCGCG 60.574 61.111 0.00 0.00 40.56 5.87
2403 2571 0.649475 CCTCTGCGAAATGCTTCTCG 59.351 55.000 0.00 0.00 46.63 4.04
2412 2580 6.228258 ACTTTTGAGTATTACCTCTGCGAAA 58.772 36.000 0.00 0.00 32.50 3.46
2535 2707 1.439644 GATCGCTCTGGTCAGGGAC 59.560 63.158 1.43 0.00 38.11 4.46
2575 2747 7.020827 TGTATTCCTCCTTGACTTTCTTCAT 57.979 36.000 0.00 0.00 0.00 2.57
2702 2874 2.242926 CTCCGAGCTTGGATGATCCTA 58.757 52.381 23.49 4.03 37.46 2.94
2737 2909 4.259690 CGGTCTAAGTAGCAAACAATACGC 60.260 45.833 0.00 0.00 0.00 4.42
2739 2911 6.453396 CGAACGGTCTAAGTAGCAAACAATAC 60.453 42.308 0.00 0.00 0.00 1.89
2768 2978 2.866156 ACACGACAATGTCACTCTGTTG 59.134 45.455 14.24 0.00 32.09 3.33
2778 2988 4.684877 TGTACTTGTACACACGACAATGT 58.315 39.130 9.28 0.00 36.27 2.71
2792 3002 7.231722 ACACTTCACTCTCTAGATTGTACTTGT 59.768 37.037 0.00 0.00 0.00 3.16
2793 3003 7.598278 ACACTTCACTCTCTAGATTGTACTTG 58.402 38.462 0.00 0.00 0.00 3.16
2794 3004 7.768807 ACACTTCACTCTCTAGATTGTACTT 57.231 36.000 0.00 0.00 0.00 2.24
2795 3005 7.448777 TCAACACTTCACTCTCTAGATTGTACT 59.551 37.037 0.00 0.00 0.00 2.73
2796 3006 7.594714 TCAACACTTCACTCTCTAGATTGTAC 58.405 38.462 0.00 0.00 0.00 2.90
2797 3007 7.761038 TCAACACTTCACTCTCTAGATTGTA 57.239 36.000 0.00 0.00 0.00 2.41
2821 3032 4.220602 GCCAAGGGTCTTATTTCACAACAT 59.779 41.667 0.00 0.00 0.00 2.71
2840 3051 6.849085 ATACACCAATAAATGAACTGCCAA 57.151 33.333 0.00 0.00 0.00 4.52
2843 3054 6.473455 GCTGAATACACCAATAAATGAACTGC 59.527 38.462 0.00 0.00 0.00 4.40
3247 3523 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3248 3524 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
3249 3525 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
3250 3526 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
3251 3527 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
3252 3528 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
3253 3529 8.446599 AAAAACACTCTTATATTATGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
3275 3551 3.602038 CGTTGAGCGTTGTAGCGTAAAAA 60.602 43.478 0.00 0.00 43.00 1.94
3276 3552 2.097299 CGTTGAGCGTTGTAGCGTAAAA 60.097 45.455 0.00 0.00 43.00 1.52
3277 3553 1.452773 CGTTGAGCGTTGTAGCGTAAA 59.547 47.619 0.00 0.00 43.00 2.01
3278 3554 1.054574 CGTTGAGCGTTGTAGCGTAA 58.945 50.000 0.00 0.00 43.00 3.18
3279 3555 1.339235 GCGTTGAGCGTTGTAGCGTA 61.339 55.000 0.00 0.00 43.66 4.42
3280 3556 2.654912 GCGTTGAGCGTTGTAGCGT 61.655 57.895 0.00 0.00 43.66 5.07
3281 3557 2.093983 GCGTTGAGCGTTGTAGCG 59.906 61.111 0.00 0.00 43.66 4.26
3291 3567 5.573282 CGTCCCATAATATAAGAGCGTTGAG 59.427 44.000 0.00 0.00 0.00 3.02
3292 3568 5.466819 CGTCCCATAATATAAGAGCGTTGA 58.533 41.667 0.00 0.00 0.00 3.18
3293 3569 4.625742 CCGTCCCATAATATAAGAGCGTTG 59.374 45.833 0.00 0.00 0.00 4.10
3294 3570 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3295 3571 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3296 3572 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3297 3573 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3298 3574 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3299 3575 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3300 3576 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3301 3577 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3302 3578 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3303 3579 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3304 3580 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3305 3581 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3306 3582 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3307 3583 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3308 3584 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3309 3585 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
3310 3586 1.206610 GAAAACTACTCCCTCCGTCCC 59.793 57.143 0.00 0.00 0.00 4.46
3311 3587 2.177734 AGAAAACTACTCCCTCCGTCC 58.822 52.381 0.00 0.00 0.00 4.79
3312 3588 4.015764 AGTAGAAAACTACTCCCTCCGTC 58.984 47.826 0.00 0.00 35.43 4.79
3313 3589 3.762823 CAGTAGAAAACTACTCCCTCCGT 59.237 47.826 6.90 0.00 38.01 4.69
3314 3590 4.015084 TCAGTAGAAAACTACTCCCTCCG 58.985 47.826 6.90 0.00 38.01 4.63
3315 3591 4.403113 CCTCAGTAGAAAACTACTCCCTCC 59.597 50.000 6.90 0.00 38.01 4.30
3316 3592 5.262804 TCCTCAGTAGAAAACTACTCCCTC 58.737 45.833 6.90 0.00 38.01 4.30
3317 3593 5.272405 TCCTCAGTAGAAAACTACTCCCT 57.728 43.478 6.90 0.00 38.01 4.20
3318 3594 6.154706 TCAATCCTCAGTAGAAAACTACTCCC 59.845 42.308 6.90 0.00 38.01 4.30
3319 3595 7.171630 TCAATCCTCAGTAGAAAACTACTCC 57.828 40.000 6.90 0.00 38.01 3.85
3320 3596 7.122948 TCCTCAATCCTCAGTAGAAAACTACTC 59.877 40.741 6.90 0.00 38.01 2.59
3321 3597 6.954684 TCCTCAATCCTCAGTAGAAAACTACT 59.045 38.462 0.00 0.00 40.45 2.57
3322 3598 7.171630 TCCTCAATCCTCAGTAGAAAACTAC 57.828 40.000 0.00 0.00 35.76 2.73
3323 3599 7.234782 TGTTCCTCAATCCTCAGTAGAAAACTA 59.765 37.037 0.00 0.00 35.76 2.24
3324 3600 6.043243 TGTTCCTCAATCCTCAGTAGAAAACT 59.957 38.462 0.00 0.00 39.81 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.