Multiple sequence alignment - TraesCS1D01G239700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G239700 chr1D 100.000 5721 0 0 1 5721 329670809 329665089 0.000000e+00 10565.0
1 TraesCS1D01G239700 chr1D 84.615 143 19 3 3 143 370915176 370915317 7.730000e-29 139.0
2 TraesCS1D01G239700 chr1D 87.879 66 5 2 2518 2582 434233104 434233041 2.210000e-09 75.0
3 TraesCS1D01G239700 chr1A 87.632 3032 253 58 2748 5721 426875163 426872196 0.000000e+00 3410.0
4 TraesCS1D01G239700 chr1A 94.638 1492 61 7 870 2350 426876769 426875286 0.000000e+00 2294.0
5 TraesCS1D01G239700 chr1B 92.500 2240 124 19 144 2350 444672018 444669790 0.000000e+00 3166.0
6 TraesCS1D01G239700 chr1B 89.245 1748 127 24 2587 4281 444669796 444668057 0.000000e+00 2130.0
7 TraesCS1D01G239700 chr1B 87.279 849 83 14 4326 5167 444667944 444667114 0.000000e+00 946.0
8 TraesCS1D01G239700 chr1B 91.327 565 41 3 5165 5721 444659304 444658740 0.000000e+00 765.0
9 TraesCS1D01G239700 chr1B 90.455 220 20 1 2366 2585 629504950 629504732 7.250000e-74 289.0
10 TraesCS1D01G239700 chr1B 78.175 252 50 5 610 858 668439062 668438813 7.680000e-34 156.0
11 TraesCS1D01G239700 chr1B 81.818 121 17 5 5286 5403 592239710 592239592 4.720000e-16 97.1
12 TraesCS1D01G239700 chr2A 87.565 1343 153 13 967 2302 19949130 19947795 0.000000e+00 1543.0
13 TraesCS1D01G239700 chr2A 82.506 886 113 19 3428 4287 19944853 19943984 0.000000e+00 739.0
14 TraesCS1D01G239700 chr2A 77.689 251 51 5 610 858 262332220 262332467 1.280000e-31 148.0
15 TraesCS1D01G239700 chr2D 87.247 1333 151 14 972 2299 19045644 19046962 0.000000e+00 1502.0
16 TraesCS1D01G239700 chr2D 87.007 1293 156 9 1009 2292 18763315 18762026 0.000000e+00 1447.0
17 TraesCS1D01G239700 chr2D 79.580 857 133 24 3430 4260 18756602 18755762 4.970000e-160 575.0
18 TraesCS1D01G239700 chr2D 95.023 221 10 1 2365 2584 460323620 460323400 4.240000e-91 346.0
19 TraesCS1D01G239700 chr2D 80.916 393 65 2 4609 4997 18755650 18755264 9.320000e-78 302.0
20 TraesCS1D01G239700 chr2D 83.465 127 18 3 3 127 88362844 88362969 1.300000e-21 115.0
21 TraesCS1D01G239700 chr2D 86.598 97 13 0 3 99 650682063 650682159 2.180000e-19 108.0
22 TraesCS1D01G239700 chr4A 84.918 1273 161 12 1010 2280 589787466 589788709 0.000000e+00 1258.0
23 TraesCS1D01G239700 chr4A 85.117 766 104 7 1519 2283 589781454 589780698 0.000000e+00 774.0
24 TraesCS1D01G239700 chr4A 81.367 907 121 31 3432 4312 589790120 589791004 0.000000e+00 695.0
25 TraesCS1D01G239700 chr4A 80.722 887 120 34 3437 4295 589845192 589846055 1.340000e-180 643.0
26 TraesCS1D01G239700 chr4A 78.560 611 89 23 3712 4302 589778837 589778249 1.170000e-96 364.0
27 TraesCS1D01G239700 chr4A 81.757 444 65 10 4504 4934 589846087 589846527 1.960000e-94 357.0
28 TraesCS1D01G239700 chr4A 81.390 446 67 10 4505 4937 589778221 589777779 3.280000e-92 350.0
29 TraesCS1D01G239700 chr4A 89.238 223 19 4 3437 3655 589779359 589779138 2.030000e-69 274.0
30 TraesCS1D01G239700 chr4A 81.627 332 55 3 4590 4916 589791074 589791404 2.630000e-68 270.0
31 TraesCS1D01G239700 chr4A 83.099 142 23 1 3 143 3220912 3221053 1.670000e-25 128.0
32 TraesCS1D01G239700 chr4A 87.500 88 10 1 614 700 741222013 741222100 3.650000e-17 100.0
33 TraesCS1D01G239700 chr4A 81.102 127 21 3 9 134 625782718 625782594 1.310000e-16 99.0
34 TraesCS1D01G239700 chr4D 84.723 1283 165 18 1006 2283 12662113 12660857 0.000000e+00 1254.0
35 TraesCS1D01G239700 chr4D 84.815 1271 164 15 1011 2280 12653099 12654341 0.000000e+00 1251.0
36 TraesCS1D01G239700 chr4D 80.730 877 131 23 3437 4291 12659802 12658942 0.000000e+00 649.0
37 TraesCS1D01G239700 chr4D 80.134 896 141 22 3438 4313 12655784 12656662 8.090000e-178 634.0
38 TraesCS1D01G239700 chr4D 85.000 340 45 3 4590 4924 12658855 12658517 1.970000e-89 340.0
39 TraesCS1D01G239700 chr4D 77.866 253 48 7 610 858 305963180 305962932 3.570000e-32 150.0
40 TraesCS1D01G239700 chr4B 83.710 1283 181 16 1003 2283 23354408 23355664 0.000000e+00 1186.0
41 TraesCS1D01G239700 chr4B 82.220 883 111 29 3438 4295 23356830 23357691 0.000000e+00 719.0
42 TraesCS1D01G239700 chr4B 77.075 253 49 9 610 858 452726064 452726311 2.780000e-28 137.0
43 TraesCS1D01G239700 chrUn 82.993 882 115 23 3428 4287 314646100 314646968 0.000000e+00 765.0
44 TraesCS1D01G239700 chrUn 86.313 453 49 7 972 1423 322648408 322647968 1.110000e-131 481.0
45 TraesCS1D01G239700 chr7B 92.661 218 16 0 2365 2582 24072133 24071916 1.200000e-81 315.0
46 TraesCS1D01G239700 chr7B 88.182 220 23 3 2366 2584 133741882 133742099 5.690000e-65 259.0
47 TraesCS1D01G239700 chr3B 89.815 216 22 0 2366 2581 267901919 267901704 1.570000e-70 278.0
48 TraesCS1D01G239700 chr6A 86.726 226 29 1 2357 2582 133852030 133851806 3.420000e-62 250.0
49 TraesCS1D01G239700 chr6A 78.279 244 43 9 621 859 617677825 617678063 1.280000e-31 148.0
50 TraesCS1D01G239700 chr6B 85.068 221 31 1 2366 2586 252093963 252094181 2.070000e-54 224.0
51 TraesCS1D01G239700 chr3D 86.391 169 19 2 175 343 4659268 4659104 1.270000e-41 182.0
52 TraesCS1D01G239700 chr3D 78.884 251 48 5 610 858 143953092 143953339 1.280000e-36 165.0
53 TraesCS1D01G239700 chr6D 84.615 143 19 3 3 143 89301313 89301172 7.730000e-29 139.0
54 TraesCS1D01G239700 chr6D 85.156 128 19 0 16 143 68091098 68091225 1.290000e-26 132.0
55 TraesCS1D01G239700 chr6D 84.615 65 9 1 2518 2582 71997913 71997976 4.790000e-06 63.9
56 TraesCS1D01G239700 chr7D 82.069 145 21 5 3 144 28069997 28069855 1.010000e-22 119.0
57 TraesCS1D01G239700 chr7A 78.571 140 27 3 3 140 117757517 117757655 7.900000e-14 89.8
58 TraesCS1D01G239700 chr3A 100.000 30 0 0 1217 1246 725924106 725924077 8.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G239700 chr1D 329665089 329670809 5720 True 10565.000000 10565 100.000000 1 5721 1 chr1D.!!$R1 5720
1 TraesCS1D01G239700 chr1A 426872196 426876769 4573 True 2852.000000 3410 91.135000 870 5721 2 chr1A.!!$R1 4851
2 TraesCS1D01G239700 chr1B 444667114 444672018 4904 True 2080.666667 3166 89.674667 144 5167 3 chr1B.!!$R5 5023
3 TraesCS1D01G239700 chr1B 444658740 444659304 564 True 765.000000 765 91.327000 5165 5721 1 chr1B.!!$R1 556
4 TraesCS1D01G239700 chr2A 19943984 19949130 5146 True 1141.000000 1543 85.035500 967 4287 2 chr2A.!!$R1 3320
5 TraesCS1D01G239700 chr2D 19045644 19046962 1318 False 1502.000000 1502 87.247000 972 2299 1 chr2D.!!$F1 1327
6 TraesCS1D01G239700 chr2D 18762026 18763315 1289 True 1447.000000 1447 87.007000 1009 2292 1 chr2D.!!$R1 1283
7 TraesCS1D01G239700 chr2D 18755264 18756602 1338 True 438.500000 575 80.248000 3430 4997 2 chr2D.!!$R3 1567
8 TraesCS1D01G239700 chr4A 589787466 589791404 3938 False 741.000000 1258 82.637333 1010 4916 3 chr4A.!!$F3 3906
9 TraesCS1D01G239700 chr4A 589845192 589846527 1335 False 500.000000 643 81.239500 3437 4934 2 chr4A.!!$F4 1497
10 TraesCS1D01G239700 chr4A 589777779 589781454 3675 True 440.500000 774 83.576250 1519 4937 4 chr4A.!!$R2 3418
11 TraesCS1D01G239700 chr4D 12653099 12656662 3563 False 942.500000 1251 82.474500 1011 4313 2 chr4D.!!$F1 3302
12 TraesCS1D01G239700 chr4D 12658517 12662113 3596 True 747.666667 1254 83.484333 1006 4924 3 chr4D.!!$R2 3918
13 TraesCS1D01G239700 chr4B 23354408 23357691 3283 False 952.500000 1186 82.965000 1003 4295 2 chr4B.!!$F2 3292
14 TraesCS1D01G239700 chrUn 314646100 314646968 868 False 765.000000 765 82.993000 3428 4287 1 chrUn.!!$F1 859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 667 0.034574 CGGGTCCCACATCCATCAAA 60.035 55.0 9.12 0.0 0.00 2.69 F
908 929 0.458260 ACATGCGTGCGGTACATCTA 59.542 50.0 5.64 0.0 0.00 1.98 F
2502 4469 0.302288 TGTGCTACACGTTTGTTCGC 59.698 50.0 0.00 0.0 37.14 4.70 F
3688 6513 0.039527 CACCCTAACTGCGGCAAAAC 60.040 55.0 3.44 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2491 4458 0.041663 CCACGAATGCGAACAAACGT 60.042 50.0 0.00 0.00 40.41 3.99 R
2507 4474 0.515564 ATTTACAAGACGTGCGCCAC 59.484 50.0 4.18 1.96 0.00 5.01 R
4180 7321 0.035152 TGCCGCTGACAATCTCCAAT 60.035 50.0 0.00 0.00 0.00 3.16 R
5499 8758 0.810648 ATGGCGCGATTGTGTGATTT 59.189 45.0 12.10 0.00 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.506886 TTTTTGACAGAAAACACCACGT 57.493 36.364 0.00 0.00 0.00 4.49
29 30 3.750639 TTTGACAGAAAACACCACGTC 57.249 42.857 0.00 0.00 0.00 4.34
30 31 2.684001 TGACAGAAAACACCACGTCT 57.316 45.000 0.00 0.00 0.00 4.18
31 32 2.980568 TGACAGAAAACACCACGTCTT 58.019 42.857 0.00 0.00 0.00 3.01
32 33 2.675844 TGACAGAAAACACCACGTCTTG 59.324 45.455 0.00 0.00 0.00 3.02
33 34 2.676342 GACAGAAAACACCACGTCTTGT 59.324 45.455 0.00 0.00 0.00 3.16
46 47 3.657625 CACGTCTTGTGTAATCGTTTTGC 59.342 43.478 0.00 0.00 43.88 3.68
47 48 3.310227 ACGTCTTGTGTAATCGTTTTGCA 59.690 39.130 0.00 0.00 0.00 4.08
48 49 4.201832 ACGTCTTGTGTAATCGTTTTGCAA 60.202 37.500 0.00 0.00 0.00 4.08
49 50 4.731000 CGTCTTGTGTAATCGTTTTGCAAA 59.269 37.500 8.05 8.05 0.00 3.68
50 51 5.228220 CGTCTTGTGTAATCGTTTTGCAAAA 59.772 36.000 20.46 20.46 0.00 2.44
51 52 6.237332 CGTCTTGTGTAATCGTTTTGCAAAAA 60.237 34.615 25.40 12.25 0.00 1.94
52 53 6.892430 GTCTTGTGTAATCGTTTTGCAAAAAC 59.108 34.615 25.40 19.01 0.00 2.43
53 54 6.809196 TCTTGTGTAATCGTTTTGCAAAAACT 59.191 30.769 25.40 12.58 0.00 2.66
54 55 7.968956 TCTTGTGTAATCGTTTTGCAAAAACTA 59.031 29.630 25.40 14.15 0.00 2.24
55 56 7.439204 TGTGTAATCGTTTTGCAAAAACTAC 57.561 32.000 25.40 20.80 0.00 2.73
56 57 6.472808 TGTGTAATCGTTTTGCAAAAACTACC 59.527 34.615 25.40 12.12 0.00 3.18
57 58 5.681982 TGTAATCGTTTTGCAAAAACTACCG 59.318 36.000 25.40 22.19 0.00 4.02
58 59 4.555348 ATCGTTTTGCAAAAACTACCGA 57.445 36.364 26.41 26.41 0.00 4.69
59 60 4.555348 TCGTTTTGCAAAAACTACCGAT 57.445 36.364 25.40 0.00 0.00 4.18
60 61 4.922719 TCGTTTTGCAAAAACTACCGATT 58.077 34.783 25.40 0.00 0.00 3.34
61 62 4.735822 TCGTTTTGCAAAAACTACCGATTG 59.264 37.500 25.40 2.29 0.00 2.67
62 63 4.735822 CGTTTTGCAAAAACTACCGATTGA 59.264 37.500 25.40 0.00 0.00 2.57
63 64 5.331235 CGTTTTGCAAAAACTACCGATTGAC 60.331 40.000 25.40 8.72 0.00 3.18
64 65 3.529634 TGCAAAAACTACCGATTGACG 57.470 42.857 0.00 0.00 42.18 4.35
74 75 2.208074 CGATTGACGGATCTGACGC 58.792 57.895 9.00 0.00 38.46 5.19
75 76 0.248661 CGATTGACGGATCTGACGCT 60.249 55.000 9.00 0.00 38.46 5.07
76 77 1.002792 CGATTGACGGATCTGACGCTA 60.003 52.381 9.00 0.00 38.46 4.26
77 78 2.350868 CGATTGACGGATCTGACGCTAT 60.351 50.000 9.00 0.00 38.46 2.97
78 79 3.643763 GATTGACGGATCTGACGCTATT 58.356 45.455 9.00 0.00 34.00 1.73
79 80 4.612939 CGATTGACGGATCTGACGCTATTA 60.613 45.833 9.00 0.00 38.46 0.98
80 81 4.642445 TTGACGGATCTGACGCTATTAA 57.358 40.909 9.00 0.00 34.00 1.40
81 82 4.224715 TGACGGATCTGACGCTATTAAG 57.775 45.455 9.00 0.00 34.00 1.85
82 83 3.630769 TGACGGATCTGACGCTATTAAGT 59.369 43.478 9.00 0.00 34.00 2.24
83 84 3.966154 ACGGATCTGACGCTATTAAGTG 58.034 45.455 9.00 0.00 39.25 3.16
84 85 3.630769 ACGGATCTGACGCTATTAAGTGA 59.369 43.478 9.00 0.00 36.68 3.41
85 86 4.222886 CGGATCTGACGCTATTAAGTGAG 58.777 47.826 0.00 0.00 36.68 3.51
86 87 4.023963 CGGATCTGACGCTATTAAGTGAGA 60.024 45.833 0.00 0.00 36.68 3.27
87 88 5.335269 CGGATCTGACGCTATTAAGTGAGAT 60.335 44.000 0.00 0.00 36.68 2.75
88 89 6.451393 GGATCTGACGCTATTAAGTGAGATT 58.549 40.000 0.00 0.00 36.68 2.40
89 90 7.573283 CGGATCTGACGCTATTAAGTGAGATTA 60.573 40.741 0.00 0.00 36.68 1.75
90 91 8.247562 GGATCTGACGCTATTAAGTGAGATTAT 58.752 37.037 0.00 0.00 36.68 1.28
91 92 8.978564 ATCTGACGCTATTAAGTGAGATTATG 57.021 34.615 0.00 0.00 36.68 1.90
92 93 8.166422 TCTGACGCTATTAAGTGAGATTATGA 57.834 34.615 0.00 0.00 36.68 2.15
93 94 8.797438 TCTGACGCTATTAAGTGAGATTATGAT 58.203 33.333 0.00 0.00 36.68 2.45
102 103 9.664332 ATTAAGTGAGATTATGATAGATGTGGC 57.336 33.333 0.00 0.00 0.00 5.01
103 104 6.047511 AGTGAGATTATGATAGATGTGGCC 57.952 41.667 0.00 0.00 0.00 5.36
104 105 5.784390 AGTGAGATTATGATAGATGTGGCCT 59.216 40.000 3.32 0.00 0.00 5.19
105 106 5.873712 GTGAGATTATGATAGATGTGGCCTG 59.126 44.000 3.32 0.00 0.00 4.85
106 107 4.841422 AGATTATGATAGATGTGGCCTGC 58.159 43.478 3.32 0.00 0.00 4.85
107 108 3.423539 TTATGATAGATGTGGCCTGCC 57.576 47.619 3.32 0.00 0.00 4.85
108 109 1.142936 ATGATAGATGTGGCCTGCCA 58.857 50.000 6.80 6.80 45.02 4.92
116 117 2.527624 TGGCCTGCCAGTCAGACT 60.528 61.111 6.80 0.00 45.72 3.24
117 118 2.046507 GGCCTGCCAGTCAGACTG 60.047 66.667 22.14 22.14 45.72 3.51
126 127 3.938112 GTCAGACTGACGTGGCAC 58.062 61.111 19.41 7.79 37.67 5.01
127 128 1.664965 GTCAGACTGACGTGGCACC 60.665 63.158 19.41 0.00 37.67 5.01
128 129 2.734723 CAGACTGACGTGGCACCG 60.735 66.667 12.86 9.88 0.00 4.94
129 130 4.664677 AGACTGACGTGGCACCGC 62.665 66.667 12.86 4.68 0.00 5.68
130 131 4.664677 GACTGACGTGGCACCGCT 62.665 66.667 12.86 0.00 0.00 5.52
131 132 4.235762 ACTGACGTGGCACCGCTT 62.236 61.111 12.86 0.00 0.00 4.68
132 133 2.048597 CTGACGTGGCACCGCTTA 60.049 61.111 12.86 0.00 0.00 3.09
133 134 1.666553 CTGACGTGGCACCGCTTAA 60.667 57.895 12.86 0.00 0.00 1.85
134 135 1.897398 CTGACGTGGCACCGCTTAAC 61.897 60.000 12.86 0.00 0.00 2.01
135 136 1.957186 GACGTGGCACCGCTTAACA 60.957 57.895 12.86 0.00 0.00 2.41
136 137 1.296056 GACGTGGCACCGCTTAACAT 61.296 55.000 12.86 0.00 0.00 2.71
137 138 1.296056 ACGTGGCACCGCTTAACATC 61.296 55.000 12.86 0.00 0.00 3.06
138 139 1.019278 CGTGGCACCGCTTAACATCT 61.019 55.000 12.86 0.00 0.00 2.90
139 140 0.727398 GTGGCACCGCTTAACATCTC 59.273 55.000 6.29 0.00 0.00 2.75
140 141 0.323302 TGGCACCGCTTAACATCTCA 59.677 50.000 0.00 0.00 0.00 3.27
141 142 0.727398 GGCACCGCTTAACATCTCAC 59.273 55.000 0.00 0.00 0.00 3.51
142 143 1.438651 GCACCGCTTAACATCTCACA 58.561 50.000 0.00 0.00 0.00 3.58
143 144 1.394917 GCACCGCTTAACATCTCACAG 59.605 52.381 0.00 0.00 0.00 3.66
144 145 1.394917 CACCGCTTAACATCTCACAGC 59.605 52.381 0.00 0.00 0.00 4.40
145 146 1.009829 CCGCTTAACATCTCACAGCC 58.990 55.000 0.00 0.00 0.00 4.85
146 147 1.406069 CCGCTTAACATCTCACAGCCT 60.406 52.381 0.00 0.00 0.00 4.58
147 148 2.350522 CGCTTAACATCTCACAGCCTT 58.649 47.619 0.00 0.00 0.00 4.35
148 149 2.349886 CGCTTAACATCTCACAGCCTTC 59.650 50.000 0.00 0.00 0.00 3.46
149 150 3.338249 GCTTAACATCTCACAGCCTTCA 58.662 45.455 0.00 0.00 0.00 3.02
150 151 3.373439 GCTTAACATCTCACAGCCTTCAG 59.627 47.826 0.00 0.00 0.00 3.02
151 152 1.818642 AACATCTCACAGCCTTCAGC 58.181 50.000 0.00 0.00 44.25 4.26
152 153 0.035630 ACATCTCACAGCCTTCAGCC 60.036 55.000 0.00 0.00 45.47 4.85
153 154 0.035725 CATCTCACAGCCTTCAGCCA 60.036 55.000 0.00 0.00 45.47 4.75
154 155 0.917533 ATCTCACAGCCTTCAGCCAT 59.082 50.000 0.00 0.00 45.47 4.40
155 156 0.035725 TCTCACAGCCTTCAGCCATG 60.036 55.000 0.00 0.00 45.47 3.66
156 157 0.322277 CTCACAGCCTTCAGCCATGT 60.322 55.000 0.00 0.00 45.47 3.21
166 167 1.001764 CAGCCATGTTGGAGCTCCA 60.002 57.895 32.00 32.00 45.94 3.86
195 196 3.777925 CGCCGCACCTTCTCAACG 61.778 66.667 0.00 0.00 0.00 4.10
203 204 2.033194 CCTTCTCAACGCCGGGAAC 61.033 63.158 2.18 0.00 0.00 3.62
219 220 2.441822 GAACCACCTCGCTGCTGTCT 62.442 60.000 0.00 0.00 0.00 3.41
221 222 1.140589 CCACCTCGCTGCTGTCTAG 59.859 63.158 0.00 0.00 0.00 2.43
224 225 0.322997 ACCTCGCTGCTGTCTAGTCT 60.323 55.000 0.00 0.00 0.00 3.24
225 226 0.100325 CCTCGCTGCTGTCTAGTCTG 59.900 60.000 0.00 0.00 0.00 3.51
234 235 2.032799 GCTGTCTAGTCTGTCCAGATCG 59.967 54.545 0.00 0.00 39.97 3.69
238 239 3.558418 GTCTAGTCTGTCCAGATCGAGTC 59.442 52.174 0.00 0.00 39.97 3.36
285 286 2.751436 CCCGAACCCCGTACTCGA 60.751 66.667 3.28 0.00 39.71 4.04
413 414 2.202797 CATGACCGCACCTCGAGG 60.203 66.667 30.11 30.11 41.67 4.63
427 428 1.446272 CGAGGGTCCGCAAGAAGAC 60.446 63.158 0.00 0.00 43.02 3.01
434 435 0.456142 TCCGCAAGAAGACGACATCG 60.456 55.000 0.00 0.00 43.28 3.84
469 471 1.952133 CGCCGACAAAGTCCGACAA 60.952 57.895 0.40 0.00 0.00 3.18
537 558 4.988716 TCACCGGAGACCGCACCT 62.989 66.667 9.46 0.00 46.86 4.00
549 570 2.357034 GCACCTCGAACTTCGGCA 60.357 61.111 11.21 0.00 40.88 5.69
550 571 1.959226 GCACCTCGAACTTCGGCAA 60.959 57.895 11.21 0.00 40.88 4.52
571 592 3.300711 CATCCATGCATCTGCTCGA 57.699 52.632 0.00 0.00 42.66 4.04
582 603 2.905959 TCTGCTCGATAAAACGACGA 57.094 45.000 0.00 0.00 37.37 4.20
583 604 3.206034 TCTGCTCGATAAAACGACGAA 57.794 42.857 0.00 0.00 37.37 3.85
590 611 5.726138 GCTCGATAAAACGACGAAGAGAGTA 60.726 44.000 0.00 0.00 37.37 2.59
605 626 4.340617 AGAGAGTAGGTGGTTTGAGAGAG 58.659 47.826 0.00 0.00 0.00 3.20
612 633 0.547712 TGGTTTGAGAGAGGGGGAGG 60.548 60.000 0.00 0.00 0.00 4.30
618 639 2.123640 GAGAGGGGGAGGGTCTCG 60.124 72.222 0.00 0.00 33.16 4.04
646 667 0.034574 CGGGTCCCACATCCATCAAA 60.035 55.000 9.12 0.00 0.00 2.69
684 705 1.002430 TGTGAGAGATTGGTGCCACTC 59.998 52.381 0.00 0.88 0.00 3.51
688 709 1.001641 AGATTGGTGCCACTCAGCC 60.002 57.895 10.52 0.00 42.30 4.85
723 744 4.319766 GCACACCTGTCATAAACTCACTTG 60.320 45.833 0.00 0.00 0.00 3.16
733 754 5.991606 TCATAAACTCACTTGACAGAACCAG 59.008 40.000 0.00 0.00 0.00 4.00
739 760 1.971357 ACTTGACAGAACCAGATCCGT 59.029 47.619 0.00 0.00 0.00 4.69
754 775 5.523916 CCAGATCCGTCGATCAATAGTTTTT 59.476 40.000 0.00 0.00 46.42 1.94
755 776 6.414079 CAGATCCGTCGATCAATAGTTTTTG 58.586 40.000 0.00 0.00 46.42 2.44
757 778 3.997681 TCCGTCGATCAATAGTTTTTGCA 59.002 39.130 0.00 0.00 0.00 4.08
761 782 6.307800 CCGTCGATCAATAGTTTTTGCAAAAT 59.692 34.615 24.39 13.64 0.00 1.82
778 799 7.987268 TGCAAAATGATTACAACAAAACGTA 57.013 28.000 0.00 0.00 0.00 3.57
845 866 5.935789 CCTAGACTTTAAAACGATGGTTCCA 59.064 40.000 0.00 0.00 34.62 3.53
895 916 0.516877 ACAACATTCCGTGACATGCG 59.483 50.000 0.00 0.00 0.00 4.73
908 929 0.458260 ACATGCGTGCGGTACATCTA 59.542 50.000 5.64 0.00 0.00 1.98
2050 2099 2.879462 GCGACGGGTTCTACGCTG 60.879 66.667 0.00 0.00 46.06 5.18
2310 3585 8.983724 GGTAAGTACATATGCAATTCTCTCTTC 58.016 37.037 1.58 0.00 0.00 2.87
2323 4290 9.719279 GCAATTCTCTCTTCTTATTCAAATCAG 57.281 33.333 0.00 0.00 0.00 2.90
2338 4305 1.372582 ATCAGCCAGTTGCATGTACG 58.627 50.000 0.00 0.00 44.83 3.67
2340 4307 1.273886 TCAGCCAGTTGCATGTACGTA 59.726 47.619 0.00 0.00 44.83 3.57
2341 4308 2.093711 TCAGCCAGTTGCATGTACGTAT 60.094 45.455 0.00 0.00 44.83 3.06
2342 4309 2.030823 CAGCCAGTTGCATGTACGTATG 59.969 50.000 0.00 0.00 44.83 2.39
2344 4311 2.675844 GCCAGTTGCATGTACGTATGAA 59.324 45.455 0.00 0.00 40.77 2.57
2346 4313 4.647964 CCAGTTGCATGTACGTATGAAAC 58.352 43.478 12.52 12.52 43.84 2.78
2349 4316 6.139435 CAGTTGCATGTACGTATGAAACAAA 58.861 36.000 19.70 0.00 45.25 2.83
2350 4317 6.634837 CAGTTGCATGTACGTATGAAACAAAA 59.365 34.615 19.70 2.50 45.25 2.44
2351 4318 7.166638 CAGTTGCATGTACGTATGAAACAAAAA 59.833 33.333 19.70 2.21 45.25 1.94
2374 4341 6.560253 AAAATAACTGTTCGTGATCTTGCT 57.440 33.333 0.00 0.00 0.00 3.91
2375 4342 7.667043 AAAATAACTGTTCGTGATCTTGCTA 57.333 32.000 0.00 0.00 0.00 3.49
2384 4351 3.067320 TCGTGATCTTGCTAGATGAGGTG 59.933 47.826 15.60 0.88 41.23 4.00
2386 4353 2.103771 TGATCTTGCTAGATGAGGTGGC 59.896 50.000 15.60 0.04 41.23 5.01
2387 4354 0.833287 TCTTGCTAGATGAGGTGGCC 59.167 55.000 0.00 0.00 0.00 5.36
2394 4361 2.284625 ATGAGGTGGCCGAGTGGA 60.285 61.111 0.00 0.00 37.49 4.02
2415 4382 4.473520 CTGCCGGGCTGGGTGTAG 62.474 72.222 21.46 2.99 38.63 2.74
2418 4385 3.470888 CCGGGCTGGGTGTAGGAG 61.471 72.222 3.77 0.00 0.00 3.69
2419 4386 3.470888 CGGGCTGGGTGTAGGAGG 61.471 72.222 0.00 0.00 0.00 4.30
2421 4388 2.368011 GGGCTGGGTGTAGGAGGTC 61.368 68.421 0.00 0.00 0.00 3.85
2422 4389 1.306226 GGCTGGGTGTAGGAGGTCT 60.306 63.158 0.00 0.00 0.00 3.85
2423 4390 1.331399 GGCTGGGTGTAGGAGGTCTC 61.331 65.000 0.00 0.00 0.00 3.36
2435 4402 1.630148 GAGGTCTCCAACGATTCGTG 58.370 55.000 13.22 7.03 39.99 4.35
2436 4403 1.201647 GAGGTCTCCAACGATTCGTGA 59.798 52.381 13.22 5.79 39.99 4.35
2437 4404 1.202582 AGGTCTCCAACGATTCGTGAG 59.797 52.381 13.22 15.15 39.99 3.51
2438 4405 1.201647 GGTCTCCAACGATTCGTGAGA 59.798 52.381 19.52 19.52 39.99 3.27
2453 4420 4.279145 TCGTGAGAAGTTAGCCTAGGATT 58.721 43.478 14.75 1.69 37.03 3.01
2454 4421 4.338682 TCGTGAGAAGTTAGCCTAGGATTC 59.661 45.833 14.75 0.00 37.03 2.52
2455 4422 4.339814 CGTGAGAAGTTAGCCTAGGATTCT 59.660 45.833 14.75 5.70 0.00 2.40
2456 4423 5.531659 CGTGAGAAGTTAGCCTAGGATTCTA 59.468 44.000 14.75 1.22 0.00 2.10
2458 4425 6.548251 GTGAGAAGTTAGCCTAGGATTCTAGT 59.452 42.308 14.75 0.00 40.98 2.57
2459 4426 7.068962 GTGAGAAGTTAGCCTAGGATTCTAGTT 59.931 40.741 14.75 4.64 40.98 2.24
2462 4429 9.138596 AGAAGTTAGCCTAGGATTCTAGTTAAG 57.861 37.037 14.75 0.00 40.98 1.85
2463 4430 8.841754 AAGTTAGCCTAGGATTCTAGTTAAGT 57.158 34.615 14.75 5.87 40.98 2.24
2464 4431 8.240267 AGTTAGCCTAGGATTCTAGTTAAGTG 57.760 38.462 14.75 0.00 40.98 3.16
2466 4433 6.472686 AGCCTAGGATTCTAGTTAAGTGTG 57.527 41.667 14.75 0.00 40.98 3.82
2467 4434 5.364157 AGCCTAGGATTCTAGTTAAGTGTGG 59.636 44.000 14.75 0.00 40.98 4.17
2468 4435 5.453480 GCCTAGGATTCTAGTTAAGTGTGGG 60.453 48.000 14.75 0.00 40.98 4.61
2470 4437 5.422214 AGGATTCTAGTTAAGTGTGGGTG 57.578 43.478 0.00 0.00 0.00 4.61
2471 4438 4.844655 AGGATTCTAGTTAAGTGTGGGTGT 59.155 41.667 0.00 0.00 0.00 4.16
2472 4439 5.309806 AGGATTCTAGTTAAGTGTGGGTGTT 59.690 40.000 0.00 0.00 0.00 3.32
2473 4440 5.411669 GGATTCTAGTTAAGTGTGGGTGTTG 59.588 44.000 0.00 0.00 0.00 3.33
2474 4441 4.345859 TCTAGTTAAGTGTGGGTGTTGG 57.654 45.455 0.00 0.00 0.00 3.77
2476 4443 3.375647 AGTTAAGTGTGGGTGTTGGTT 57.624 42.857 0.00 0.00 0.00 3.67
2477 4444 3.703921 AGTTAAGTGTGGGTGTTGGTTT 58.296 40.909 0.00 0.00 0.00 3.27
2478 4445 3.445805 AGTTAAGTGTGGGTGTTGGTTTG 59.554 43.478 0.00 0.00 0.00 2.93
2482 4449 1.406180 GTGTGGGTGTTGGTTTGTACC 59.594 52.381 0.00 0.00 45.26 3.34
2486 4453 1.679153 GGGTGTTGGTTTGTACCTGTG 59.321 52.381 0.00 0.00 45.27 3.66
2487 4454 1.066454 GGTGTTGGTTTGTACCTGTGC 59.934 52.381 0.00 0.00 45.27 4.57
2488 4455 2.021457 GTGTTGGTTTGTACCTGTGCT 58.979 47.619 0.00 0.00 45.27 4.40
2489 4456 3.207778 GTGTTGGTTTGTACCTGTGCTA 58.792 45.455 0.00 0.00 45.27 3.49
2490 4457 3.002965 GTGTTGGTTTGTACCTGTGCTAC 59.997 47.826 0.00 0.00 45.27 3.58
2491 4458 3.207778 GTTGGTTTGTACCTGTGCTACA 58.792 45.455 0.00 0.00 45.27 2.74
2492 4459 2.841215 TGGTTTGTACCTGTGCTACAC 58.159 47.619 0.00 0.00 45.27 2.90
2493 4460 1.796459 GGTTTGTACCTGTGCTACACG 59.204 52.381 0.00 0.00 41.53 4.49
2495 4462 2.867975 GTTTGTACCTGTGCTACACGTT 59.132 45.455 0.00 0.00 37.14 3.99
2496 4463 2.894763 TGTACCTGTGCTACACGTTT 57.105 45.000 0.00 0.00 37.14 3.60
2497 4464 2.475818 TGTACCTGTGCTACACGTTTG 58.524 47.619 0.00 0.00 37.14 2.93
2498 4465 2.159071 TGTACCTGTGCTACACGTTTGT 60.159 45.455 0.00 0.00 37.14 2.83
2499 4466 2.032680 ACCTGTGCTACACGTTTGTT 57.967 45.000 0.00 0.00 37.14 2.83
2500 4467 1.937899 ACCTGTGCTACACGTTTGTTC 59.062 47.619 0.00 0.00 37.14 3.18
2501 4468 1.070843 CCTGTGCTACACGTTTGTTCG 60.071 52.381 0.00 0.00 37.14 3.95
2502 4469 0.302288 TGTGCTACACGTTTGTTCGC 59.698 50.000 0.00 0.00 37.14 4.70
2504 4471 1.070175 GTGCTACACGTTTGTTCGCAT 60.070 47.619 6.25 0.00 40.70 4.73
2507 4474 2.482235 CTACACGTTTGTTCGCATTCG 58.518 47.619 0.00 0.00 37.15 3.34
2508 4475 0.653636 ACACGTTTGTTCGCATTCGT 59.346 45.000 0.00 0.00 37.30 3.85
2509 4476 1.034293 CACGTTTGTTCGCATTCGTG 58.966 50.000 0.00 0.00 42.65 4.35
2510 4477 0.041663 ACGTTTGTTCGCATTCGTGG 60.042 50.000 0.00 0.00 36.23 4.94
2511 4478 1.327292 CGTTTGTTCGCATTCGTGGC 61.327 55.000 0.00 0.00 36.96 5.01
2526 4493 0.515564 GTGGCGCACGTCTTGTAAAT 59.484 50.000 10.83 0.00 0.00 1.40
2529 4496 3.004171 TGGCGCACGTCTTGTAAATATT 58.996 40.909 10.83 0.00 0.00 1.28
2530 4497 3.437395 TGGCGCACGTCTTGTAAATATTT 59.563 39.130 10.83 5.89 0.00 1.40
2532 4499 4.854839 GGCGCACGTCTTGTAAATATTTTT 59.145 37.500 10.83 0.00 0.00 1.94
2558 4525 9.768662 TTCCCTTCTATAAAAATATGGTACGTC 57.231 33.333 0.00 0.00 0.00 4.34
2560 4527 9.774413 CCCTTCTATAAAAATATGGTACGTCTT 57.226 33.333 0.00 0.00 0.00 3.01
2567 4534 7.887996 AAAAATATGGTACGTCTTTGTCGTA 57.112 32.000 0.00 0.00 41.72 3.43
2568 4535 8.483307 AAAAATATGGTACGTCTTTGTCGTAT 57.517 30.769 0.00 0.00 43.73 3.06
2570 4537 7.689953 AATATGGTACGTCTTTGTCGTATTC 57.310 36.000 0.00 0.00 43.73 1.75
2573 4540 4.919168 TGGTACGTCTTTGTCGTATTCTTG 59.081 41.667 0.00 0.00 43.73 3.02
2574 4541 5.156355 GGTACGTCTTTGTCGTATTCTTGA 58.844 41.667 0.00 0.00 43.73 3.02
2576 4543 6.144402 GGTACGTCTTTGTCGTATTCTTGAAA 59.856 38.462 0.00 0.00 43.73 2.69
2577 4544 6.592798 ACGTCTTTGTCGTATTCTTGAAAA 57.407 33.333 0.00 0.00 39.78 2.29
2578 4545 7.007313 ACGTCTTTGTCGTATTCTTGAAAAA 57.993 32.000 0.00 0.00 39.78 1.94
2623 4590 2.561478 TAGCTTGACTTCAACCACCC 57.439 50.000 0.00 0.00 0.00 4.61
2626 4593 1.270550 GCTTGACTTCAACCACCCATG 59.729 52.381 0.00 0.00 0.00 3.66
2647 4614 7.601130 CCCATGAGGCATAAATTAATTCATGTG 59.399 37.037 12.05 3.40 38.99 3.21
2709 5203 7.504574 TGATATTTCCAATCACTAGTACTCCGA 59.495 37.037 0.00 0.00 0.00 4.55
2711 5205 5.578005 TTCCAATCACTAGTACTCCGAAG 57.422 43.478 0.00 0.00 0.00 3.79
2728 5222 4.202441 CCGAAGGTGATCCAAATGATCTT 58.798 43.478 4.05 0.00 44.99 2.40
2729 5223 5.368145 CCGAAGGTGATCCAAATGATCTTA 58.632 41.667 4.05 0.00 44.99 2.10
2731 5225 6.072838 CCGAAGGTGATCCAAATGATCTTATG 60.073 42.308 4.05 0.00 44.99 1.90
2758 5252 5.597594 AGTTTACATAGGGAGTAGGTAGCAC 59.402 44.000 0.00 0.00 29.84 4.40
2801 5300 2.093447 AGGACCTTGTCAAATCGCCTAG 60.093 50.000 0.00 0.00 33.68 3.02
2847 5346 6.455360 AACATTTATGATCGATGCACCTTT 57.545 33.333 0.54 0.00 0.00 3.11
2848 5347 5.824429 ACATTTATGATCGATGCACCTTTG 58.176 37.500 0.54 0.00 0.00 2.77
2859 5362 2.688364 GCACCTTTGCTAACACACTC 57.312 50.000 0.00 0.00 46.17 3.51
2860 5363 1.946768 GCACCTTTGCTAACACACTCA 59.053 47.619 0.00 0.00 46.17 3.41
2861 5364 2.554032 GCACCTTTGCTAACACACTCAT 59.446 45.455 0.00 0.00 46.17 2.90
2892 5640 4.864633 TGCAATTTTCGTGCATTAACTCA 58.135 34.783 0.00 0.00 46.76 3.41
2900 5648 2.337583 GTGCATTAACTCAGCTCGACA 58.662 47.619 0.00 0.00 0.00 4.35
2920 5674 5.477510 GACACTGACATTCTTCAGAGACAT 58.522 41.667 7.12 0.00 45.19 3.06
3039 5801 2.270527 GGCCAGGAAGGTCAGAGC 59.729 66.667 0.00 0.00 43.39 4.09
3080 5858 8.027524 AGGATAATCTGAATCTGAAACTGCTA 57.972 34.615 0.00 0.00 0.00 3.49
3165 5959 1.596727 GACATCTTGAGAGGCGAATGC 59.403 52.381 0.00 0.00 41.71 3.56
3249 6043 3.499737 CGTGGTGGCTTCGGCATC 61.500 66.667 0.00 0.00 43.96 3.91
3265 6059 3.245284 CGGCATCGTTTACAAGGTGATAG 59.755 47.826 0.00 0.00 0.00 2.08
3366 6183 6.205270 GGATAGTAGCAGTACTAGTGTTCCTC 59.795 46.154 5.39 0.00 43.55 3.71
3370 6187 3.688673 AGCAGTACTAGTGTTCCTCGTAC 59.311 47.826 5.39 0.00 40.76 3.67
3371 6188 3.181502 GCAGTACTAGTGTTCCTCGTACC 60.182 52.174 5.39 0.00 41.15 3.34
3373 6190 4.456911 CAGTACTAGTGTTCCTCGTACCAA 59.543 45.833 5.39 0.00 41.15 3.67
3375 6192 4.715527 ACTAGTGTTCCTCGTACCAATC 57.284 45.455 0.00 0.00 0.00 2.67
3420 6240 6.187727 TCAGTTAGTCAGGACCAAAATCTT 57.812 37.500 0.00 0.00 0.00 2.40
3456 6276 1.303317 GGGTGAAATGCCAGACGGT 60.303 57.895 0.00 0.00 33.28 4.83
3679 6504 3.685139 ACATGTCACTCACCCTAACTG 57.315 47.619 0.00 0.00 0.00 3.16
3687 6512 0.179015 TCACCCTAACTGCGGCAAAA 60.179 50.000 3.44 0.00 0.00 2.44
3688 6513 0.039527 CACCCTAACTGCGGCAAAAC 60.040 55.000 3.44 0.00 0.00 2.43
3689 6514 0.466555 ACCCTAACTGCGGCAAAACA 60.467 50.000 3.44 0.00 0.00 2.83
3690 6515 0.240945 CCCTAACTGCGGCAAAACAG 59.759 55.000 3.44 0.00 39.86 3.16
3695 6520 0.179140 ACTGCGGCAAAACAGTTGTG 60.179 50.000 3.44 0.00 44.59 3.33
3899 7002 2.417719 GACATGGTGGCGAAGATATCC 58.582 52.381 0.00 0.00 0.00 2.59
3945 7051 3.558411 GCATCGGCGACAGTCAGC 61.558 66.667 13.76 6.12 0.00 4.26
3985 7092 7.611855 AGAAAGGATTGTTGGAACATAGTAAGG 59.388 37.037 0.00 0.00 39.30 2.69
4023 7133 5.950758 ATAACACGGCAATGTTCAAGTAA 57.049 34.783 7.99 0.00 41.89 2.24
4025 7135 4.159377 ACACGGCAATGTTCAAGTAATG 57.841 40.909 0.00 0.00 0.00 1.90
4180 7321 2.428544 ACAGCCTTGGTGTGTTGTTA 57.571 45.000 0.00 0.00 42.86 2.41
4181 7322 2.944129 ACAGCCTTGGTGTGTTGTTAT 58.056 42.857 0.00 0.00 42.86 1.89
4189 7330 5.243730 CCTTGGTGTGTTGTTATTGGAGATT 59.756 40.000 0.00 0.00 0.00 2.40
4259 7400 5.927281 AAGCAATCAATTACCTCTTGCAT 57.073 34.783 8.12 0.00 43.49 3.96
4262 7403 4.340381 GCAATCAATTACCTCTTGCATCCT 59.660 41.667 0.00 0.00 41.33 3.24
4264 7405 6.293845 GCAATCAATTACCTCTTGCATCCTAG 60.294 42.308 0.00 0.00 41.33 3.02
4356 7593 8.526978 TGCCTTAATTATTGCACATTTAACTCA 58.473 29.630 5.56 0.00 0.00 3.41
4469 7708 4.744570 TCTAGATGTGCCTTAAACAGACG 58.255 43.478 0.00 0.00 0.00 4.18
4470 7709 2.699954 AGATGTGCCTTAAACAGACGG 58.300 47.619 0.00 0.00 0.00 4.79
4477 7716 5.299782 TGTGCCTTAAACAGACGGTATTTTT 59.700 36.000 0.00 0.00 0.00 1.94
4576 7815 3.164268 CCCTGATGGAACCACATTGAAA 58.836 45.455 0.00 0.00 35.39 2.69
4689 7935 2.267006 CGATGGCTGCTCACTGGT 59.733 61.111 0.00 0.00 0.00 4.00
4916 8166 3.996363 CTGACCATCACGAACATTGAAGA 59.004 43.478 0.00 0.00 0.00 2.87
4946 8196 0.251077 GGATGCATGGATGGAGGGAC 60.251 60.000 2.46 0.00 0.00 4.46
4962 8212 3.959991 GACGGAGGGCAAGCTGGAC 62.960 68.421 0.00 0.00 0.00 4.02
4983 8233 3.264450 ACCTGGAACCGAAGATTGAAGAT 59.736 43.478 0.00 0.00 0.00 2.40
5055 8305 5.994054 CACCTATGTAAATCATGGAGACTGG 59.006 44.000 0.00 0.00 37.22 4.00
5137 8387 8.938801 ATGGTAGGCAATGATTTAATACATGA 57.061 30.769 0.00 0.00 0.00 3.07
5152 8402 6.659745 AATACATGATGGGTCAATGATTGG 57.340 37.500 5.20 0.00 38.01 3.16
5157 8407 1.381867 TGGGTCAATGATTGGGTCCT 58.618 50.000 5.20 0.00 0.00 3.85
5159 8409 3.130450 TGGGTCAATGATTGGGTCCTAT 58.870 45.455 5.20 0.00 0.00 2.57
5168 8418 7.513781 TCAATGATTGGGTCCTATGATCTCTAA 59.486 37.037 5.20 0.00 0.00 2.10
5188 8438 7.353595 TCTCTAATCCTTCCCCATCCTTTAAAT 59.646 37.037 0.00 0.00 0.00 1.40
5244 8501 5.023452 CCTAGCCCTTTCCCAAAACTTAAT 58.977 41.667 0.00 0.00 0.00 1.40
5247 8504 3.838317 GCCCTTTCCCAAAACTTAATCCT 59.162 43.478 0.00 0.00 0.00 3.24
5248 8505 4.081642 GCCCTTTCCCAAAACTTAATCCTC 60.082 45.833 0.00 0.00 0.00 3.71
5250 8507 4.466370 CCTTTCCCAAAACTTAATCCTCCC 59.534 45.833 0.00 0.00 0.00 4.30
5254 8511 6.471942 TCCCAAAACTTAATCCTCCCTAAA 57.528 37.500 0.00 0.00 0.00 1.85
5297 8554 4.040445 ACGTTTCCACAAACATTCCAAG 57.960 40.909 0.00 0.00 41.94 3.61
5324 8581 8.331742 CAAATACACCACATTTTAACACAAACC 58.668 33.333 0.00 0.00 0.00 3.27
5347 8604 5.406175 CCTAAACAATTCAAATGCACCACAG 59.594 40.000 0.00 0.00 0.00 3.66
5349 8606 2.366266 ACAATTCAAATGCACCACAGCT 59.634 40.909 0.00 0.00 34.99 4.24
5404 8662 6.814146 TCCAATCCAACAAACAACTAAAACAC 59.186 34.615 0.00 0.00 0.00 3.32
5408 8666 7.588143 TCCAACAAACAACTAAAACACAATG 57.412 32.000 0.00 0.00 0.00 2.82
5418 8676 7.706179 ACAACTAAAACACAATGACATTTGAGG 59.294 33.333 13.71 0.99 0.00 3.86
5447 8705 3.120649 GCACCGACTACAACAAGTTCATC 60.121 47.826 0.00 0.00 0.00 2.92
5582 8841 6.736581 TCCCACAAGTGAATTCCCAATATTA 58.263 36.000 2.27 0.00 0.00 0.98
5596 8855 6.867550 TCCCAATATTATATCGCACTCTCAG 58.132 40.000 0.00 0.00 0.00 3.35
5649 8908 1.527148 CTCCTCGATCGCCCTCTCA 60.527 63.158 11.09 0.00 0.00 3.27
5670 8929 5.011586 TCATCCAATTGCATCAAGAACTCA 58.988 37.500 0.00 0.00 0.00 3.41
5682 8941 6.093771 GCATCAAGAACTCAAACATCTCATCT 59.906 38.462 0.00 0.00 0.00 2.90
5700 8959 7.058525 TCTCATCTGGCTCAATTTTATCACAT 58.941 34.615 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.754323 AGACGTGGTGTTTTCTGTCAAAA 59.246 39.130 0.00 0.00 0.00 2.44
9 10 3.340034 AGACGTGGTGTTTTCTGTCAAA 58.660 40.909 0.00 0.00 0.00 2.69
13 14 2.418628 CACAAGACGTGGTGTTTTCTGT 59.581 45.455 0.00 0.00 42.34 3.41
14 15 3.051606 CACAAGACGTGGTGTTTTCTG 57.948 47.619 0.00 0.00 42.34 3.02
25 26 3.310227 TGCAAAACGATTACACAAGACGT 59.690 39.130 0.00 0.00 38.81 4.34
26 27 3.867665 TGCAAAACGATTACACAAGACG 58.132 40.909 0.00 0.00 0.00 4.18
27 28 6.561945 TTTTGCAAAACGATTACACAAGAC 57.438 33.333 20.46 0.00 0.00 3.01
28 29 6.809196 AGTTTTTGCAAAACGATTACACAAGA 59.191 30.769 23.79 2.13 35.42 3.02
29 30 6.988329 AGTTTTTGCAAAACGATTACACAAG 58.012 32.000 23.79 0.00 35.42 3.16
30 31 6.952935 AGTTTTTGCAAAACGATTACACAA 57.047 29.167 23.79 2.87 35.42 3.33
31 32 6.472808 GGTAGTTTTTGCAAAACGATTACACA 59.527 34.615 23.79 8.58 35.42 3.72
32 33 6.344390 CGGTAGTTTTTGCAAAACGATTACAC 60.344 38.462 23.79 16.58 35.42 2.90
33 34 5.681982 CGGTAGTTTTTGCAAAACGATTACA 59.318 36.000 23.79 5.12 35.42 2.41
34 35 5.908499 TCGGTAGTTTTTGCAAAACGATTAC 59.092 36.000 23.79 18.81 35.42 1.89
35 36 6.057627 TCGGTAGTTTTTGCAAAACGATTA 57.942 33.333 23.79 9.11 35.42 1.75
36 37 4.922719 TCGGTAGTTTTTGCAAAACGATT 58.077 34.783 23.79 10.08 35.42 3.34
37 38 4.555348 TCGGTAGTTTTTGCAAAACGAT 57.445 36.364 23.79 14.52 35.42 3.73
38 39 4.555348 ATCGGTAGTTTTTGCAAAACGA 57.445 36.364 26.41 26.41 35.42 3.85
39 40 4.735822 TCAATCGGTAGTTTTTGCAAAACG 59.264 37.500 23.79 21.49 35.42 3.60
40 41 5.331235 CGTCAATCGGTAGTTTTTGCAAAAC 60.331 40.000 23.79 17.65 35.71 2.43
41 42 4.735822 CGTCAATCGGTAGTTTTTGCAAAA 59.264 37.500 20.46 20.46 35.71 2.44
42 43 4.283678 CGTCAATCGGTAGTTTTTGCAAA 58.716 39.130 8.05 8.05 35.71 3.68
43 44 3.879427 CGTCAATCGGTAGTTTTTGCAA 58.121 40.909 0.00 0.00 35.71 4.08
44 45 3.529634 CGTCAATCGGTAGTTTTTGCA 57.470 42.857 0.00 0.00 35.71 4.08
56 57 0.248661 AGCGTCAGATCCGTCAATCG 60.249 55.000 0.00 0.00 39.52 3.34
57 58 2.776312 TAGCGTCAGATCCGTCAATC 57.224 50.000 0.00 0.00 0.00 2.67
58 59 3.735237 AATAGCGTCAGATCCGTCAAT 57.265 42.857 0.00 0.00 0.00 2.57
59 60 4.097437 ACTTAATAGCGTCAGATCCGTCAA 59.903 41.667 0.00 0.00 0.00 3.18
60 61 3.630769 ACTTAATAGCGTCAGATCCGTCA 59.369 43.478 0.00 0.00 0.00 4.35
61 62 3.975670 CACTTAATAGCGTCAGATCCGTC 59.024 47.826 0.00 0.00 0.00 4.79
62 63 3.630769 TCACTTAATAGCGTCAGATCCGT 59.369 43.478 0.00 0.00 0.00 4.69
63 64 4.023963 TCTCACTTAATAGCGTCAGATCCG 60.024 45.833 0.00 0.00 0.00 4.18
64 65 5.440234 TCTCACTTAATAGCGTCAGATCC 57.560 43.478 0.00 0.00 0.00 3.36
65 66 9.071221 CATAATCTCACTTAATAGCGTCAGATC 57.929 37.037 0.00 0.00 0.00 2.75
66 67 8.797438 TCATAATCTCACTTAATAGCGTCAGAT 58.203 33.333 0.00 0.00 0.00 2.90
67 68 8.166422 TCATAATCTCACTTAATAGCGTCAGA 57.834 34.615 0.00 0.00 0.00 3.27
68 69 8.978564 ATCATAATCTCACTTAATAGCGTCAG 57.021 34.615 0.00 0.00 0.00 3.51
76 77 9.664332 GCCACATCTATCATAATCTCACTTAAT 57.336 33.333 0.00 0.00 0.00 1.40
77 78 8.097038 GGCCACATCTATCATAATCTCACTTAA 58.903 37.037 0.00 0.00 0.00 1.85
78 79 7.455953 AGGCCACATCTATCATAATCTCACTTA 59.544 37.037 5.01 0.00 0.00 2.24
79 80 6.271857 AGGCCACATCTATCATAATCTCACTT 59.728 38.462 5.01 0.00 0.00 3.16
80 81 5.784390 AGGCCACATCTATCATAATCTCACT 59.216 40.000 5.01 0.00 0.00 3.41
81 82 5.873712 CAGGCCACATCTATCATAATCTCAC 59.126 44.000 5.01 0.00 0.00 3.51
82 83 5.570236 GCAGGCCACATCTATCATAATCTCA 60.570 44.000 5.01 0.00 0.00 3.27
83 84 4.874966 GCAGGCCACATCTATCATAATCTC 59.125 45.833 5.01 0.00 0.00 2.75
84 85 4.324099 GGCAGGCCACATCTATCATAATCT 60.324 45.833 5.01 0.00 35.81 2.40
85 86 3.944015 GGCAGGCCACATCTATCATAATC 59.056 47.826 5.01 0.00 35.81 1.75
86 87 3.331591 TGGCAGGCCACATCTATCATAAT 59.668 43.478 9.35 0.00 41.89 1.28
87 88 2.710471 TGGCAGGCCACATCTATCATAA 59.290 45.455 9.35 0.00 41.89 1.90
88 89 2.303890 CTGGCAGGCCACATCTATCATA 59.696 50.000 9.35 0.00 41.89 2.15
89 90 1.073444 CTGGCAGGCCACATCTATCAT 59.927 52.381 9.35 0.00 41.89 2.45
90 91 0.471191 CTGGCAGGCCACATCTATCA 59.529 55.000 9.35 0.00 41.89 2.15
91 92 0.471617 ACTGGCAGGCCACATCTATC 59.528 55.000 20.34 0.00 41.89 2.08
92 93 0.471617 GACTGGCAGGCCACATCTAT 59.528 55.000 20.34 0.00 41.89 1.98
93 94 0.909133 TGACTGGCAGGCCACATCTA 60.909 55.000 19.69 0.00 41.89 1.98
94 95 2.194388 CTGACTGGCAGGCCACATCT 62.194 60.000 19.69 0.00 41.89 2.90
95 96 1.748122 CTGACTGGCAGGCCACATC 60.748 63.158 19.69 10.53 41.89 3.06
96 97 2.226315 TCTGACTGGCAGGCCACAT 61.226 57.895 19.69 0.00 44.98 3.21
97 98 2.848679 TCTGACTGGCAGGCCACA 60.849 61.111 19.69 11.29 44.98 4.17
98 99 2.359230 GTCTGACTGGCAGGCCAC 60.359 66.667 19.69 11.01 43.52 5.01
105 106 1.373497 CCACGTCAGTCTGACTGGC 60.373 63.158 31.26 29.63 46.75 4.85
106 107 1.373497 GCCACGTCAGTCTGACTGG 60.373 63.158 31.26 29.04 45.94 4.00
107 108 0.941463 GTGCCACGTCAGTCTGACTG 60.941 60.000 27.73 27.73 44.85 3.51
108 109 1.364171 GTGCCACGTCAGTCTGACT 59.636 57.895 26.46 13.52 44.85 3.41
109 110 1.664965 GGTGCCACGTCAGTCTGAC 60.665 63.158 21.13 21.13 43.65 3.51
110 111 2.734591 GGTGCCACGTCAGTCTGA 59.265 61.111 0.00 0.00 0.00 3.27
111 112 2.734723 CGGTGCCACGTCAGTCTG 60.735 66.667 0.00 0.00 0.00 3.51
112 113 4.664677 GCGGTGCCACGTCAGTCT 62.665 66.667 0.00 0.00 35.98 3.24
113 114 2.758770 TAAGCGGTGCCACGTCAGTC 62.759 60.000 0.00 0.00 35.98 3.51
114 115 2.372040 TTAAGCGGTGCCACGTCAGT 62.372 55.000 0.00 0.00 35.98 3.41
115 116 1.666553 TTAAGCGGTGCCACGTCAG 60.667 57.895 0.00 0.00 35.98 3.51
116 117 1.957186 GTTAAGCGGTGCCACGTCA 60.957 57.895 0.00 0.00 35.98 4.35
117 118 1.296056 ATGTTAAGCGGTGCCACGTC 61.296 55.000 0.00 0.00 35.98 4.34
118 119 1.296056 GATGTTAAGCGGTGCCACGT 61.296 55.000 0.00 0.00 35.98 4.49
119 120 1.019278 AGATGTTAAGCGGTGCCACG 61.019 55.000 0.00 0.00 0.00 4.94
120 121 0.727398 GAGATGTTAAGCGGTGCCAC 59.273 55.000 0.00 0.00 0.00 5.01
121 122 0.323302 TGAGATGTTAAGCGGTGCCA 59.677 50.000 0.00 0.00 0.00 4.92
122 123 0.727398 GTGAGATGTTAAGCGGTGCC 59.273 55.000 0.00 0.00 0.00 5.01
123 124 1.394917 CTGTGAGATGTTAAGCGGTGC 59.605 52.381 0.00 0.00 0.00 5.01
124 125 1.394917 GCTGTGAGATGTTAAGCGGTG 59.605 52.381 0.00 0.00 0.00 4.94
125 126 1.676014 GGCTGTGAGATGTTAAGCGGT 60.676 52.381 0.00 0.00 34.66 5.68
126 127 1.009829 GGCTGTGAGATGTTAAGCGG 58.990 55.000 0.00 0.00 34.66 5.52
127 128 2.015736 AGGCTGTGAGATGTTAAGCG 57.984 50.000 0.00 0.00 34.66 4.68
128 129 3.338249 TGAAGGCTGTGAGATGTTAAGC 58.662 45.455 0.00 0.00 0.00 3.09
129 130 3.373439 GCTGAAGGCTGTGAGATGTTAAG 59.627 47.826 0.00 0.00 38.06 1.85
130 131 3.338249 GCTGAAGGCTGTGAGATGTTAA 58.662 45.455 0.00 0.00 38.06 2.01
131 132 2.355108 GGCTGAAGGCTGTGAGATGTTA 60.355 50.000 0.00 0.00 41.46 2.41
132 133 1.612726 GGCTGAAGGCTGTGAGATGTT 60.613 52.381 0.00 0.00 41.46 2.71
133 134 0.035630 GGCTGAAGGCTGTGAGATGT 60.036 55.000 0.00 0.00 41.46 3.06
134 135 0.035725 TGGCTGAAGGCTGTGAGATG 60.036 55.000 5.41 0.00 41.69 2.90
135 136 0.917533 ATGGCTGAAGGCTGTGAGAT 59.082 50.000 5.41 0.00 41.69 2.75
136 137 0.035725 CATGGCTGAAGGCTGTGAGA 60.036 55.000 5.41 0.00 41.69 3.27
137 138 0.322277 ACATGGCTGAAGGCTGTGAG 60.322 55.000 13.74 0.00 41.69 3.51
138 139 0.111061 AACATGGCTGAAGGCTGTGA 59.889 50.000 13.74 0.00 41.69 3.58
139 140 0.242825 CAACATGGCTGAAGGCTGTG 59.757 55.000 5.41 6.82 41.69 3.66
140 141 0.896940 CCAACATGGCTGAAGGCTGT 60.897 55.000 5.41 4.63 41.69 4.40
141 142 0.609957 TCCAACATGGCTGAAGGCTG 60.610 55.000 5.41 4.06 41.69 4.85
142 143 0.323178 CTCCAACATGGCTGAAGGCT 60.323 55.000 5.41 0.00 41.69 4.58
143 144 1.941999 GCTCCAACATGGCTGAAGGC 61.942 60.000 0.00 0.00 37.47 4.35
144 145 0.323178 AGCTCCAACATGGCTGAAGG 60.323 55.000 0.00 0.00 37.47 3.46
145 146 1.093159 GAGCTCCAACATGGCTGAAG 58.907 55.000 0.87 0.00 37.47 3.02
146 147 0.322816 GGAGCTCCAACATGGCTGAA 60.323 55.000 28.43 0.00 37.47 3.02
147 148 1.300963 GGAGCTCCAACATGGCTGA 59.699 57.895 28.43 0.00 37.47 4.26
148 149 1.001764 TGGAGCTCCAACATGGCTG 60.002 57.895 33.41 0.00 44.35 4.85
149 150 3.499406 TGGAGCTCCAACATGGCT 58.501 55.556 33.41 0.00 44.35 4.75
210 211 0.891373 TGGACAGACTAGACAGCAGC 59.109 55.000 0.00 0.00 0.00 5.25
212 213 2.586648 TCTGGACAGACTAGACAGCA 57.413 50.000 0.00 0.00 31.27 4.41
214 215 3.536570 TCGATCTGGACAGACTAGACAG 58.463 50.000 3.82 0.00 40.75 3.51
219 220 2.552031 CGACTCGATCTGGACAGACTA 58.448 52.381 3.82 0.00 40.75 2.59
221 222 0.378962 CCGACTCGATCTGGACAGAC 59.621 60.000 3.82 0.00 40.75 3.51
224 225 0.106669 ATCCCGACTCGATCTGGACA 60.107 55.000 0.00 0.00 42.93 4.02
225 226 0.594110 GATCCCGACTCGATCTGGAC 59.406 60.000 0.00 3.14 42.93 4.02
234 235 3.227792 GATGCCCCGATCCCGACTC 62.228 68.421 0.00 0.00 38.22 3.36
260 261 2.281970 GGGGTTCGGGTGTGGAAC 60.282 66.667 0.00 0.00 42.32 3.62
271 272 2.714991 GGGGTCGAGTACGGGGTTC 61.715 68.421 0.00 0.00 40.21 3.62
308 309 3.545481 CTCGCGTGCAAGCCGTAG 61.545 66.667 19.11 10.08 0.00 3.51
413 414 0.389948 ATGTCGTCTTCTTGCGGACC 60.390 55.000 0.00 0.00 0.00 4.46
450 451 3.774702 GTCGGACTTTGTCGGCGC 61.775 66.667 0.00 0.00 33.78 6.53
451 452 1.952133 TTGTCGGACTTTGTCGGCG 60.952 57.895 9.88 0.00 33.78 6.46
452 453 1.155424 TGTTGTCGGACTTTGTCGGC 61.155 55.000 9.88 0.00 33.78 5.54
453 454 0.580104 GTGTTGTCGGACTTTGTCGG 59.420 55.000 9.88 0.00 34.82 4.79
458 460 0.464916 GGGGTGTGTTGTCGGACTTT 60.465 55.000 9.88 0.00 0.00 2.66
464 466 2.978010 GGCAGGGGTGTGTTGTCG 60.978 66.667 0.00 0.00 0.00 4.35
501 506 4.577246 GCTAGAGCGGGCCGTGAG 62.577 72.222 28.82 19.11 0.00 3.51
537 558 1.623081 GATGCGTTGCCGAAGTTCGA 61.623 55.000 26.37 4.58 43.74 3.71
571 592 5.392811 CCACCTACTCTCTTCGTCGTTTTAT 60.393 44.000 0.00 0.00 0.00 1.40
582 603 4.742012 TCTCTCAAACCACCTACTCTCTT 58.258 43.478 0.00 0.00 0.00 2.85
583 604 4.340617 CTCTCTCAAACCACCTACTCTCT 58.659 47.826 0.00 0.00 0.00 3.10
590 611 0.842467 CCCCCTCTCTCAAACCACCT 60.842 60.000 0.00 0.00 0.00 4.00
605 626 4.779733 TCAGCGAGACCCTCCCCC 62.780 72.222 0.00 0.00 0.00 5.40
618 639 4.329545 TGGGACCCGCTTGTCAGC 62.330 66.667 5.91 0.00 43.41 4.26
628 649 1.824852 GTTTTGATGGATGTGGGACCC 59.175 52.381 2.45 2.45 0.00 4.46
646 667 4.059511 TCACACCGTTACATCAAATCGTT 58.940 39.130 0.00 0.00 0.00 3.85
659 680 1.878102 GCACCAATCTCTCACACCGTT 60.878 52.381 0.00 0.00 0.00 4.44
660 681 0.320771 GCACCAATCTCTCACACCGT 60.321 55.000 0.00 0.00 0.00 4.83
700 721 3.403038 AGTGAGTTTATGACAGGTGTGC 58.597 45.455 0.00 0.00 0.00 4.57
702 723 5.057149 GTCAAGTGAGTTTATGACAGGTGT 58.943 41.667 0.00 0.00 41.35 4.16
723 744 0.809385 TCGACGGATCTGGTTCTGTC 59.191 55.000 6.47 9.41 44.91 3.51
739 760 8.984891 ATCATTTTGCAAAAACTATTGATCGA 57.015 26.923 27.10 11.43 31.84 3.59
754 775 6.893958 ACGTTTTGTTGTAATCATTTTGCA 57.106 29.167 0.00 0.00 0.00 4.08
755 776 8.484008 ACATACGTTTTGTTGTAATCATTTTGC 58.516 29.630 0.00 0.00 0.00 3.68
813 834 8.500773 CATCGTTTTAAAGTCTAGGTTAGCAAA 58.499 33.333 0.00 0.00 0.00 3.68
814 835 7.118680 CCATCGTTTTAAAGTCTAGGTTAGCAA 59.881 37.037 0.00 0.00 0.00 3.91
826 847 4.279671 TGCATGGAACCATCGTTTTAAAGT 59.720 37.500 3.10 0.00 33.90 2.66
835 856 4.601019 GAGTAAATTGCATGGAACCATCG 58.399 43.478 0.12 1.89 33.90 3.84
845 866 4.142773 CGGTGGTAAACGAGTAAATTGCAT 60.143 41.667 0.00 0.00 0.00 3.96
908 929 4.417437 AGTTCTATATACCGATGGCTGGT 58.583 43.478 2.44 2.44 43.62 4.00
2310 3585 5.063180 TGCAACTGGCTGATTTGAATAAG 57.937 39.130 0.00 0.00 45.15 1.73
2323 4290 2.276201 TCATACGTACATGCAACTGGC 58.724 47.619 0.00 0.00 45.13 4.85
2350 4317 6.970484 AGCAAGATCACGAACAGTTATTTTT 58.030 32.000 0.00 0.00 0.00 1.94
2351 4318 6.560253 AGCAAGATCACGAACAGTTATTTT 57.440 33.333 0.00 0.00 0.00 1.82
2352 4319 7.097192 TCTAGCAAGATCACGAACAGTTATTT 58.903 34.615 0.00 0.00 0.00 1.40
2353 4320 6.631016 TCTAGCAAGATCACGAACAGTTATT 58.369 36.000 0.00 0.00 0.00 1.40
2354 4321 6.208988 TCTAGCAAGATCACGAACAGTTAT 57.791 37.500 0.00 0.00 0.00 1.89
2355 4322 5.638596 TCTAGCAAGATCACGAACAGTTA 57.361 39.130 0.00 0.00 0.00 2.24
2356 4323 4.521130 TCTAGCAAGATCACGAACAGTT 57.479 40.909 0.00 0.00 0.00 3.16
2357 4324 4.158579 TCATCTAGCAAGATCACGAACAGT 59.841 41.667 0.00 0.00 40.65 3.55
2358 4325 4.676546 TCATCTAGCAAGATCACGAACAG 58.323 43.478 0.00 0.00 40.65 3.16
2359 4326 4.440663 CCTCATCTAGCAAGATCACGAACA 60.441 45.833 0.00 0.00 40.65 3.18
2360 4327 4.047822 CCTCATCTAGCAAGATCACGAAC 58.952 47.826 0.00 0.00 40.65 3.95
2361 4328 3.701542 ACCTCATCTAGCAAGATCACGAA 59.298 43.478 0.00 0.00 40.65 3.85
2362 4329 3.067320 CACCTCATCTAGCAAGATCACGA 59.933 47.826 0.00 0.00 40.65 4.35
2363 4330 3.379240 CACCTCATCTAGCAAGATCACG 58.621 50.000 0.00 0.00 40.65 4.35
2364 4331 3.726607 CCACCTCATCTAGCAAGATCAC 58.273 50.000 0.00 0.00 40.65 3.06
2365 4332 2.103771 GCCACCTCATCTAGCAAGATCA 59.896 50.000 0.00 0.00 40.65 2.92
2366 4333 2.549778 GGCCACCTCATCTAGCAAGATC 60.550 54.545 0.00 0.00 40.65 2.75
2367 4334 1.419387 GGCCACCTCATCTAGCAAGAT 59.581 52.381 0.00 0.00 43.54 2.40
2368 4335 0.833287 GGCCACCTCATCTAGCAAGA 59.167 55.000 0.00 0.00 35.80 3.02
2369 4336 0.531532 CGGCCACCTCATCTAGCAAG 60.532 60.000 2.24 0.00 0.00 4.01
2370 4337 0.975556 TCGGCCACCTCATCTAGCAA 60.976 55.000 2.24 0.00 0.00 3.91
2371 4338 1.381191 TCGGCCACCTCATCTAGCA 60.381 57.895 2.24 0.00 0.00 3.49
2372 4339 1.365633 CTCGGCCACCTCATCTAGC 59.634 63.158 2.24 0.00 0.00 3.42
2373 4340 0.387202 CACTCGGCCACCTCATCTAG 59.613 60.000 2.24 0.00 0.00 2.43
2374 4341 1.043116 CCACTCGGCCACCTCATCTA 61.043 60.000 2.24 0.00 0.00 1.98
2375 4342 2.362369 CCACTCGGCCACCTCATCT 61.362 63.158 2.24 0.00 0.00 2.90
2403 4370 2.285442 ACCTCCTACACCCAGCCC 60.285 66.667 0.00 0.00 0.00 5.19
2404 4371 1.306226 AGACCTCCTACACCCAGCC 60.306 63.158 0.00 0.00 0.00 4.85
2406 4373 2.903404 GGAGACCTCCTACACCCAG 58.097 63.158 8.76 0.00 46.16 4.45
2412 4379 4.736199 ACGAATCGTTGGAGACCTCCTAC 61.736 52.174 16.98 16.98 46.97 3.18
2415 4382 0.531200 ACGAATCGTTGGAGACCTCC 59.469 55.000 0.96 9.08 40.59 4.30
2417 4384 1.202582 CTCACGAATCGTTGGAGACCT 59.797 52.381 15.31 0.00 38.32 3.85
2418 4385 1.201647 TCTCACGAATCGTTGGAGACC 59.798 52.381 17.98 0.00 38.32 3.85
2419 4386 2.631418 TCTCACGAATCGTTGGAGAC 57.369 50.000 17.98 0.00 38.32 3.36
2421 4388 2.947852 ACTTCTCACGAATCGTTGGAG 58.052 47.619 5.20 11.11 38.32 3.86
2422 4389 3.380479 AACTTCTCACGAATCGTTGGA 57.620 42.857 5.20 4.39 38.32 3.53
2423 4390 3.060895 GCTAACTTCTCACGAATCGTTGG 59.939 47.826 5.20 1.74 38.32 3.77
2424 4391 3.060895 GGCTAACTTCTCACGAATCGTTG 59.939 47.826 5.20 2.12 38.32 4.10
2425 4392 3.056749 AGGCTAACTTCTCACGAATCGTT 60.057 43.478 5.20 0.00 38.32 3.85
2426 4393 2.492484 AGGCTAACTTCTCACGAATCGT 59.508 45.455 0.96 0.96 42.36 3.73
2427 4394 3.152261 AGGCTAACTTCTCACGAATCG 57.848 47.619 0.00 0.00 0.00 3.34
2428 4395 4.338682 TCCTAGGCTAACTTCTCACGAATC 59.661 45.833 2.96 0.00 0.00 2.52
2429 4396 4.279145 TCCTAGGCTAACTTCTCACGAAT 58.721 43.478 2.96 0.00 0.00 3.34
2433 4400 5.862678 AGAATCCTAGGCTAACTTCTCAC 57.137 43.478 2.96 0.00 0.00 3.51
2434 4401 6.674573 ACTAGAATCCTAGGCTAACTTCTCA 58.325 40.000 2.96 0.00 45.19 3.27
2435 4402 7.591421 AACTAGAATCCTAGGCTAACTTCTC 57.409 40.000 2.96 0.00 45.19 2.87
2436 4403 9.138596 CTTAACTAGAATCCTAGGCTAACTTCT 57.861 37.037 2.96 13.92 45.19 2.85
2437 4404 8.916062 ACTTAACTAGAATCCTAGGCTAACTTC 58.084 37.037 2.96 2.20 45.19 3.01
2438 4405 8.697292 CACTTAACTAGAATCCTAGGCTAACTT 58.303 37.037 2.96 0.00 45.19 2.66
2439 4406 7.840210 ACACTTAACTAGAATCCTAGGCTAACT 59.160 37.037 2.96 3.54 45.19 2.24
2441 4408 7.069578 CCACACTTAACTAGAATCCTAGGCTAA 59.930 40.741 2.96 0.00 45.19 3.09
2442 4409 6.550108 CCACACTTAACTAGAATCCTAGGCTA 59.450 42.308 2.96 0.00 45.19 3.93
2443 4410 5.364157 CCACACTTAACTAGAATCCTAGGCT 59.636 44.000 2.96 0.00 45.19 4.58
2444 4411 5.453480 CCCACACTTAACTAGAATCCTAGGC 60.453 48.000 2.96 0.00 45.19 3.93
2445 4412 5.661759 ACCCACACTTAACTAGAATCCTAGG 59.338 44.000 0.82 0.82 45.19 3.02
2449 4416 5.161943 ACACCCACACTTAACTAGAATCC 57.838 43.478 0.00 0.00 0.00 3.01
2450 4417 5.411669 CCAACACCCACACTTAACTAGAATC 59.588 44.000 0.00 0.00 0.00 2.52
2453 4420 3.712733 ACCAACACCCACACTTAACTAGA 59.287 43.478 0.00 0.00 0.00 2.43
2454 4421 4.081322 ACCAACACCCACACTTAACTAG 57.919 45.455 0.00 0.00 0.00 2.57
2455 4422 4.506937 AACCAACACCCACACTTAACTA 57.493 40.909 0.00 0.00 0.00 2.24
2456 4423 3.375647 AACCAACACCCACACTTAACT 57.624 42.857 0.00 0.00 0.00 2.24
2458 4425 3.432378 ACAAACCAACACCCACACTTAA 58.568 40.909 0.00 0.00 0.00 1.85
2459 4426 3.088789 ACAAACCAACACCCACACTTA 57.911 42.857 0.00 0.00 0.00 2.24
2462 4429 1.406180 GGTACAAACCAACACCCACAC 59.594 52.381 0.00 0.00 45.98 3.82
2463 4430 1.765230 GGTACAAACCAACACCCACA 58.235 50.000 0.00 0.00 45.98 4.17
2473 4440 1.796459 CGTGTAGCACAGGTACAAACC 59.204 52.381 10.24 0.00 45.83 3.27
2474 4441 2.476821 ACGTGTAGCACAGGTACAAAC 58.523 47.619 10.24 0.00 45.83 2.93
2476 4443 2.867368 CAAACGTGTAGCACAGGTACAA 59.133 45.455 10.24 0.00 45.23 2.41
2477 4444 2.159071 ACAAACGTGTAGCACAGGTACA 60.159 45.455 12.68 5.07 45.23 2.90
2478 4445 2.476821 ACAAACGTGTAGCACAGGTAC 58.523 47.619 12.68 0.00 45.23 3.34
2482 4449 1.656429 GCGAACAAACGTGTAGCACAG 60.656 52.381 0.00 0.00 39.76 3.66
2486 4453 2.230864 GAATGCGAACAAACGTGTAGC 58.769 47.619 0.00 0.00 40.16 3.58
2487 4454 2.097104 ACGAATGCGAACAAACGTGTAG 60.097 45.455 0.00 0.00 39.11 2.74
2488 4455 1.859703 ACGAATGCGAACAAACGTGTA 59.140 42.857 0.00 0.00 39.11 2.90
2489 4456 0.653636 ACGAATGCGAACAAACGTGT 59.346 45.000 0.00 0.00 39.11 4.49
2490 4457 1.034293 CACGAATGCGAACAAACGTG 58.966 50.000 0.00 0.00 45.32 4.49
2491 4458 0.041663 CCACGAATGCGAACAAACGT 60.042 50.000 0.00 0.00 40.41 3.99
2492 4459 1.327292 GCCACGAATGCGAACAAACG 61.327 55.000 0.00 0.00 41.64 3.60
2493 4460 2.420097 GCCACGAATGCGAACAAAC 58.580 52.632 0.00 0.00 41.64 2.93
2507 4474 0.515564 ATTTACAAGACGTGCGCCAC 59.484 50.000 4.18 1.96 0.00 5.01
2508 4475 2.081725 TATTTACAAGACGTGCGCCA 57.918 45.000 4.18 0.00 0.00 5.69
2509 4476 3.668596 AATATTTACAAGACGTGCGCC 57.331 42.857 4.18 0.00 0.00 6.53
2510 4477 5.985526 AAAAATATTTACAAGACGTGCGC 57.014 34.783 0.00 0.00 0.00 6.09
2532 4499 9.768662 GACGTACCATATTTTTATAGAAGGGAA 57.231 33.333 0.00 0.00 0.00 3.97
2540 4507 9.585099 ACGACAAAGACGTACCATATTTTTATA 57.415 29.630 0.00 0.00 42.17 0.98
2542 4509 7.887996 ACGACAAAGACGTACCATATTTTTA 57.112 32.000 0.00 0.00 42.17 1.52
2544 4511 8.483307 AATACGACAAAGACGTACCATATTTT 57.517 30.769 0.00 0.00 46.21 1.82
2547 4514 7.035840 AGAATACGACAAAGACGTACCATAT 57.964 36.000 0.00 0.00 46.21 1.78
2548 4515 6.441093 AGAATACGACAAAGACGTACCATA 57.559 37.500 0.00 0.00 46.21 2.74
2549 4516 5.320549 AGAATACGACAAAGACGTACCAT 57.679 39.130 0.00 0.00 46.21 3.55
2550 4517 4.771590 AGAATACGACAAAGACGTACCA 57.228 40.909 0.00 0.00 46.21 3.25
2551 4518 5.156355 TCAAGAATACGACAAAGACGTACC 58.844 41.667 0.00 0.00 46.21 3.34
2589 4556 5.598417 AGTCAAGCTAAGGAACATGGTTTTT 59.402 36.000 0.00 0.00 0.00 1.94
2590 4557 5.140454 AGTCAAGCTAAGGAACATGGTTTT 58.860 37.500 0.00 0.00 0.00 2.43
2591 4558 4.729868 AGTCAAGCTAAGGAACATGGTTT 58.270 39.130 0.00 0.00 0.00 3.27
2592 4559 4.373156 AGTCAAGCTAAGGAACATGGTT 57.627 40.909 0.00 0.00 0.00 3.67
2593 4560 4.202461 TGAAGTCAAGCTAAGGAACATGGT 60.202 41.667 0.00 0.00 0.00 3.55
2594 4561 4.326826 TGAAGTCAAGCTAAGGAACATGG 58.673 43.478 0.00 0.00 0.00 3.66
2595 4562 5.693814 GTTGAAGTCAAGCTAAGGAACATG 58.306 41.667 0.00 0.00 36.39 3.21
2596 4563 5.948992 GTTGAAGTCAAGCTAAGGAACAT 57.051 39.130 0.00 0.00 36.39 2.71
2623 4590 7.601130 CCCACATGAATTAATTTATGCCTCATG 59.399 37.037 25.05 20.80 42.69 3.07
2626 4593 7.288810 TCCCACATGAATTAATTTATGCCTC 57.711 36.000 25.05 3.97 37.30 4.70
2705 5199 3.931907 ATCATTTGGATCACCTTCGGA 57.068 42.857 0.00 0.00 37.04 4.55
2729 5223 9.364653 CTACCTACTCCCTATGTAAACTAACAT 57.635 37.037 0.00 0.00 42.62 2.71
2731 5225 7.286316 TGCTACCTACTCCCTATGTAAACTAAC 59.714 40.741 0.00 0.00 0.00 2.34
2735 5229 5.221402 GGTGCTACCTACTCCCTATGTAAAC 60.221 48.000 0.00 0.00 34.73 2.01
2741 5235 3.700863 TTGGTGCTACCTACTCCCTAT 57.299 47.619 6.83 0.00 39.58 2.57
2742 5236 3.102204 GTTTGGTGCTACCTACTCCCTA 58.898 50.000 6.83 0.00 39.58 3.53
2748 5242 8.419442 ACAATACTATAGTTTGGTGCTACCTAC 58.581 37.037 11.40 5.42 39.58 3.18
2751 5245 9.204570 CATACAATACTATAGTTTGGTGCTACC 57.795 37.037 11.40 0.00 39.22 3.18
2758 5252 8.774586 GTCCTTGCATACAATACTATAGTTTGG 58.225 37.037 11.40 3.28 34.61 3.28
2847 5346 4.202357 ACTCCTCAAATGAGTGTGTTAGCA 60.202 41.667 9.43 0.00 41.40 3.49
2848 5347 4.319177 ACTCCTCAAATGAGTGTGTTAGC 58.681 43.478 9.43 0.00 41.40 3.09
2859 5362 4.383649 CACGAAAATTGCACTCCTCAAATG 59.616 41.667 0.00 0.00 0.00 2.32
2860 5363 4.549458 CACGAAAATTGCACTCCTCAAAT 58.451 39.130 0.00 0.00 0.00 2.32
2861 5364 3.795150 GCACGAAAATTGCACTCCTCAAA 60.795 43.478 0.00 0.00 39.93 2.69
2887 5635 1.032794 TGTCAGTGTCGAGCTGAGTT 58.967 50.000 16.97 0.00 42.80 3.01
2890 5638 1.889170 AGAATGTCAGTGTCGAGCTGA 59.111 47.619 13.68 13.68 40.28 4.26
2892 5640 2.297315 TGAAGAATGTCAGTGTCGAGCT 59.703 45.455 0.00 0.00 0.00 4.09
2900 5648 4.529769 TGGATGTCTCTGAAGAATGTCAGT 59.470 41.667 2.38 0.00 44.56 3.41
2920 5674 1.872237 CGCGAACTTCTTGGTCTTGGA 60.872 52.381 0.00 0.00 0.00 3.53
3039 5801 0.250295 TCCTCTGAAAACACAGCGGG 60.250 55.000 0.00 0.00 41.43 6.13
3080 5858 2.307098 AGGATAGGACAGCAAGCAAAGT 59.693 45.455 0.00 0.00 0.00 2.66
3165 5959 0.029035 CTTCGAGATGGTACGTCGGG 59.971 60.000 0.00 0.00 34.43 5.14
3249 6043 7.410800 TGTGTAAACTATCACCTTGTAAACG 57.589 36.000 0.00 0.00 34.14 3.60
3313 6130 7.148373 GCTGTTGTTTATACGACCATAGGAAAA 60.148 37.037 0.00 0.00 37.80 2.29
3366 6183 5.959527 CGAAATTTCTGTCATGATTGGTACG 59.040 40.000 15.92 0.00 0.00 3.67
3370 6187 8.183536 TCATTACGAAATTTCTGTCATGATTGG 58.816 33.333 22.09 7.43 28.96 3.16
3371 6188 9.726232 ATCATTACGAAATTTCTGTCATGATTG 57.274 29.630 26.10 15.04 34.89 2.67
3373 6190 9.112725 TGATCATTACGAAATTTCTGTCATGAT 57.887 29.630 28.62 28.62 37.52 2.45
3375 6192 8.393366 ACTGATCATTACGAAATTTCTGTCATG 58.607 33.333 15.92 18.36 0.00 3.07
3420 6240 4.351407 TCACCCTGGTAAATTCAACTGGTA 59.649 41.667 0.00 0.00 0.00 3.25
3456 6276 2.613026 TCTTCACCGCAACTTCTTGA 57.387 45.000 0.00 0.00 0.00 3.02
3679 6504 0.869880 GGTCACAACTGTTTTGCCGC 60.870 55.000 1.87 0.00 0.00 6.53
3687 6512 6.119536 TGAGTTTAGAAATGGTCACAACTGT 58.880 36.000 0.00 0.00 33.20 3.55
3688 6513 6.618287 TGAGTTTAGAAATGGTCACAACTG 57.382 37.500 0.00 0.00 33.20 3.16
3689 6514 7.823745 ATTGAGTTTAGAAATGGTCACAACT 57.176 32.000 0.00 0.00 34.85 3.16
3690 6515 8.352942 AGAATTGAGTTTAGAAATGGTCACAAC 58.647 33.333 0.00 0.00 0.00 3.32
3691 6516 8.352201 CAGAATTGAGTTTAGAAATGGTCACAA 58.648 33.333 0.00 0.00 0.00 3.33
3692 6517 7.502226 ACAGAATTGAGTTTAGAAATGGTCACA 59.498 33.333 0.00 0.00 0.00 3.58
3695 6520 7.174946 TCCACAGAATTGAGTTTAGAAATGGTC 59.825 37.037 0.00 0.00 0.00 4.02
3945 7051 1.409412 CTTTCTGTGACGGTCGAGTG 58.591 55.000 3.34 0.00 0.00 3.51
3985 7092 5.535616 CGTGTTATACGCAAAGTTGTAGTC 58.464 41.667 0.00 0.00 46.92 2.59
4045 7169 1.276622 ATTTGGCGAGGGTACACTCT 58.723 50.000 22.47 0.00 35.33 3.24
4084 7220 3.566853 CTGCCAGCACGCCGTATG 61.567 66.667 0.00 0.00 0.00 2.39
4085 7221 4.082523 ACTGCCAGCACGCCGTAT 62.083 61.111 0.00 0.00 0.00 3.06
4180 7321 0.035152 TGCCGCTGACAATCTCCAAT 60.035 50.000 0.00 0.00 0.00 3.16
4181 7322 0.674581 CTGCCGCTGACAATCTCCAA 60.675 55.000 0.00 0.00 0.00 3.53
4189 7330 2.922503 TTCCTCCTGCCGCTGACA 60.923 61.111 0.00 0.00 0.00 3.58
4306 7447 7.430502 GCACATCTTGATATGCTTTAGTGAAAC 59.569 37.037 6.62 0.00 35.16 2.78
4310 7451 5.530171 AGGCACATCTTGATATGCTTTAGTG 59.470 40.000 12.68 2.49 38.18 2.74
4482 7721 7.429051 GGCACAAAAGTTTGAATTGAAATGAAC 59.571 33.333 10.66 0.00 40.55 3.18
4489 7728 6.039616 GTGTAGGCACAAAAGTTTGAATTGA 58.960 36.000 10.66 0.00 44.64 2.57
4490 7729 6.272698 GTGTAGGCACAAAAGTTTGAATTG 57.727 37.500 10.66 0.36 44.64 2.32
4576 7815 2.107041 TTGTCAAGGTCGCCGTGGAT 62.107 55.000 10.69 0.00 33.92 3.41
4684 7930 0.975040 CCTGCTCTAGCTCCACCAGT 60.975 60.000 3.26 0.00 42.66 4.00
4689 7935 3.150335 CGGCCTGCTCTAGCTCCA 61.150 66.667 0.00 0.00 42.66 3.86
4946 8196 4.785453 GGTCCAGCTTGCCCTCCG 62.785 72.222 0.00 0.00 0.00 4.63
4962 8212 3.334583 TCTTCAATCTTCGGTTCCAGG 57.665 47.619 0.00 0.00 0.00 4.45
5024 8274 8.731275 TCCATGATTTACATAGGTGTGTTTAG 57.269 34.615 0.00 0.00 39.39 1.85
5046 8296 6.867519 TCTTGAATATGTTACCAGTCTCCA 57.132 37.500 0.00 0.00 0.00 3.86
5107 8357 1.888215 ATCATTGCCTACCATCTGCG 58.112 50.000 0.00 0.00 0.00 5.18
5137 8387 1.932338 AGGACCCAATCATTGACCCAT 59.068 47.619 0.00 0.00 0.00 4.00
5152 8402 5.423931 GGGAAGGATTAGAGATCATAGGACC 59.576 48.000 0.00 0.00 0.00 4.46
5157 8407 5.966935 GGATGGGGAAGGATTAGAGATCATA 59.033 44.000 0.00 0.00 0.00 2.15
5159 8409 4.140350 AGGATGGGGAAGGATTAGAGATCA 60.140 45.833 0.00 0.00 0.00 2.92
5168 8418 5.162870 GGGTATTTAAAGGATGGGGAAGGAT 60.163 44.000 0.00 0.00 0.00 3.24
5210 8460 2.636299 GGGCTAGGTGCACGAAAAA 58.364 52.632 11.45 0.00 45.15 1.94
5254 8511 7.433680 ACGTTTGGAAGAATAGCAAAAGAATT 58.566 30.769 0.00 0.00 0.00 2.17
5297 8554 7.470289 TTGTGTTAAAATGTGGTGTATTTGC 57.530 32.000 0.00 0.00 0.00 3.68
5324 8581 5.107375 GCTGTGGTGCATTTGAATTGTTTAG 60.107 40.000 0.00 0.00 0.00 1.85
5404 8662 3.592059 CCCTTTGCCTCAAATGTCATTG 58.408 45.455 0.00 0.00 32.70 2.82
5408 8666 0.968405 TGCCCTTTGCCTCAAATGTC 59.032 50.000 0.00 0.00 40.16 3.06
5418 8676 0.887387 TTGTAGTCGGTGCCCTTTGC 60.887 55.000 0.00 0.00 41.77 3.68
5499 8758 0.810648 ATGGCGCGATTGTGTGATTT 59.189 45.000 12.10 0.00 0.00 2.17
5509 8768 2.662857 CATCGGTGATGGCGCGAT 60.663 61.111 12.10 3.93 36.51 4.58
5582 8841 2.246469 AGATGGCTGAGAGTGCGATAT 58.754 47.619 0.00 0.00 0.00 1.63
5596 8855 1.684983 CATGGATCCAACCAAGATGGC 59.315 52.381 20.67 0.00 42.67 4.40
5649 8908 5.988310 TTGAGTTCTTGATGCAATTGGAT 57.012 34.783 12.76 12.76 0.00 3.41
5670 8929 6.600882 AAAATTGAGCCAGATGAGATGTTT 57.399 33.333 0.00 0.00 0.00 2.83
5682 8941 7.068470 TGCTATTGATGTGATAAAATTGAGCCA 59.932 33.333 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.