Multiple sequence alignment - TraesCS1D01G238800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G238800 chr1D 100.000 4214 0 0 1 4214 328446980 328442767 0.000000e+00 7782.0
1 TraesCS1D01G238800 chr1D 86.923 2363 264 29 894 3236 322380901 322383238 0.000000e+00 2610.0
2 TraesCS1D01G238800 chr1D 85.792 2217 264 33 995 3198 323636495 323638673 0.000000e+00 2302.0
3 TraesCS1D01G238800 chr1D 86.772 378 45 5 3372 3745 325503734 325503358 2.340000e-112 416.0
4 TraesCS1D01G238800 chr1D 87.037 216 20 5 620 829 322380599 322380812 1.960000e-58 237.0
5 TraesCS1D01G238800 chr1D 83.465 127 11 5 3219 3335 325492503 325492377 4.450000e-20 110.0
6 TraesCS1D01G238800 chr1A 97.403 2811 65 6 1402 4209 417389158 417386353 0.000000e+00 4780.0
7 TraesCS1D01G238800 chr1A 87.312 2790 273 30 453 3198 425258472 425255720 0.000000e+00 3116.0
8 TraesCS1D01G238800 chr1A 85.137 2624 313 47 618 3198 421637591 421640180 0.000000e+00 2614.0
9 TraesCS1D01G238800 chr1A 86.769 2275 257 29 990 3236 406582576 406584834 0.000000e+00 2494.0
10 TraesCS1D01G238800 chr1A 86.382 2269 263 24 990 3239 407518165 407515924 0.000000e+00 2436.0
11 TraesCS1D01G238800 chr1A 94.829 967 15 17 453 1406 417396238 417395294 0.000000e+00 1476.0
12 TraesCS1D01G238800 chr1A 88.018 217 12 6 618 828 407518555 407518347 1.170000e-60 244.0
13 TraesCS1D01G238800 chr1A 87.097 217 14 6 618 828 406582183 406582391 2.530000e-57 233.0
14 TraesCS1D01G238800 chr1A 96.875 32 1 0 3295 3326 419025120 419025151 2.000000e-03 54.7
15 TraesCS1D01G238800 chr1B 98.030 2741 51 1 987 3724 442621036 442618296 0.000000e+00 4759.0
16 TraesCS1D01G238800 chr1B 97.600 2208 49 2 2005 4209 442551746 442549540 0.000000e+00 3781.0
17 TraesCS1D01G238800 chr1B 90.835 2215 191 10 990 3198 326927499 326925291 0.000000e+00 2955.0
18 TraesCS1D01G238800 chr1B 86.811 2267 262 25 990 3236 435360632 435362881 0.000000e+00 2495.0
19 TraesCS1D01G238800 chr1B 89.636 357 10 11 453 782 442621434 442621078 3.010000e-116 429.0
20 TraesCS1D01G238800 chr1B 85.849 318 40 5 3372 3688 326925131 326924818 2.430000e-87 333.0
21 TraesCS1D01G238800 chr1B 87.442 215 14 7 620 828 435360243 435360450 7.040000e-58 235.0
22 TraesCS1D01G238800 chr1B 86.957 184 16 5 894 1077 435808661 435808836 2.570000e-47 200.0
23 TraesCS1D01G238800 chr1B 84.663 163 11 6 620 776 326927877 326927723 2.620000e-32 150.0
24 TraesCS1D01G238800 chr1B 91.892 74 5 1 755 828 435808502 435808574 7.450000e-18 102.0
25 TraesCS1D01G238800 chr1B 83.636 110 13 3 59 168 264012657 264012553 9.640000e-17 99.0
26 TraesCS1D01G238800 chr1B 81.890 127 13 5 3219 3335 437835086 437834960 9.640000e-17 99.0
27 TraesCS1D01G238800 chr1B 94.737 38 2 0 3298 3335 437861415 437861378 4.550000e-05 60.2
28 TraesCS1D01G238800 chr3D 97.973 444 9 0 1 444 473819881 473819438 0.000000e+00 771.0
29 TraesCS1D01G238800 chr4D 80.694 461 62 13 1 449 7047435 7047880 2.430000e-87 333.0
30 TraesCS1D01G238800 chr3B 79.500 400 54 13 59 445 459089228 459089612 4.180000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G238800 chr1D 328442767 328446980 4213 True 7782.0 7782 100.000000 1 4214 1 chr1D.!!$R3 4213
1 TraesCS1D01G238800 chr1D 323636495 323638673 2178 False 2302.0 2302 85.792000 995 3198 1 chr1D.!!$F1 2203
2 TraesCS1D01G238800 chr1D 322380599 322383238 2639 False 1423.5 2610 86.980000 620 3236 2 chr1D.!!$F2 2616
3 TraesCS1D01G238800 chr1A 417386353 417389158 2805 True 4780.0 4780 97.403000 1402 4209 1 chr1A.!!$R1 2807
4 TraesCS1D01G238800 chr1A 425255720 425258472 2752 True 3116.0 3116 87.312000 453 3198 1 chr1A.!!$R3 2745
5 TraesCS1D01G238800 chr1A 421637591 421640180 2589 False 2614.0 2614 85.137000 618 3198 1 chr1A.!!$F2 2580
6 TraesCS1D01G238800 chr1A 417395294 417396238 944 True 1476.0 1476 94.829000 453 1406 1 chr1A.!!$R2 953
7 TraesCS1D01G238800 chr1A 406582183 406584834 2651 False 1363.5 2494 86.933000 618 3236 2 chr1A.!!$F3 2618
8 TraesCS1D01G238800 chr1A 407515924 407518555 2631 True 1340.0 2436 87.200000 618 3239 2 chr1A.!!$R4 2621
9 TraesCS1D01G238800 chr1B 442549540 442551746 2206 True 3781.0 3781 97.600000 2005 4209 1 chr1B.!!$R4 2204
10 TraesCS1D01G238800 chr1B 442618296 442621434 3138 True 2594.0 4759 93.833000 453 3724 2 chr1B.!!$R6 3271
11 TraesCS1D01G238800 chr1B 435360243 435362881 2638 False 1365.0 2495 87.126500 620 3236 2 chr1B.!!$F1 2616
12 TraesCS1D01G238800 chr1B 326924818 326927877 3059 True 1146.0 2955 87.115667 620 3688 3 chr1B.!!$R5 3068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.034616 GAGCTGAGCAGTCAAGTGGT 59.965 55.0 7.39 0.0 30.14 4.16 F
302 303 0.316204 ACGGTTAGGACCAGTCAACG 59.684 55.0 0.00 0.0 46.91 4.10 F
1831 2051 0.325671 CTCACTCTCCCTTGCCCCTA 60.326 60.0 0.00 0.0 0.00 3.53 F
2320 2552 0.877071 CAATGTGGTGCAGGTGACTC 59.123 55.0 0.00 0.0 40.21 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2299 1.895131 TGCAGAGGAAAAGATTTGGGC 59.105 47.619 0.00 0.0 0.00 5.36 R
2219 2448 1.898574 GCCCCGGCACTAATGATGG 60.899 63.158 0.00 0.0 41.49 3.51 R
2978 3210 0.964860 TGATGGGCCCATGTTTGTCG 60.965 55.000 42.21 0.0 36.70 4.35 R
4030 4293 2.481441 TGCCACTCCATATTCCTCAGT 58.519 47.619 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.262936 TGCAGCGCACAACCATAC 58.737 55.556 11.47 0.00 31.71 2.39
19 20 1.302431 TGCAGCGCACAACCATACT 60.302 52.632 11.47 0.00 31.71 2.12
20 21 1.135315 GCAGCGCACAACCATACTG 59.865 57.895 11.47 0.00 0.00 2.74
21 22 1.135315 CAGCGCACAACCATACTGC 59.865 57.895 11.47 0.00 0.00 4.40
22 23 1.003355 AGCGCACAACCATACTGCT 60.003 52.632 11.47 0.00 0.00 4.24
23 24 1.021390 AGCGCACAACCATACTGCTC 61.021 55.000 11.47 0.00 0.00 4.26
24 25 1.709760 CGCACAACCATACTGCTCG 59.290 57.895 0.00 0.00 0.00 5.03
25 26 0.735978 CGCACAACCATACTGCTCGA 60.736 55.000 0.00 0.00 0.00 4.04
26 27 0.721718 GCACAACCATACTGCTCGAC 59.278 55.000 0.00 0.00 0.00 4.20
27 28 0.992072 CACAACCATACTGCTCGACG 59.008 55.000 0.00 0.00 0.00 5.12
28 29 0.736325 ACAACCATACTGCTCGACGC 60.736 55.000 0.00 0.58 39.77 5.19
36 37 4.056125 TGCTCGACGCAGAGTGGG 62.056 66.667 9.11 0.00 45.47 4.61
37 38 4.803426 GCTCGACGCAGAGTGGGG 62.803 72.222 9.11 0.00 40.26 4.96
38 39 4.803426 CTCGACGCAGAGTGGGGC 62.803 72.222 0.00 0.00 34.60 5.80
56 57 4.500116 GTCGCACGGGAGGAGCTC 62.500 72.222 4.71 4.71 33.62 4.09
59 60 4.200283 GCACGGGAGGAGCTCGAG 62.200 72.222 8.45 8.45 45.56 4.04
60 61 4.200283 CACGGGAGGAGCTCGAGC 62.200 72.222 30.01 30.01 45.56 5.03
71 72 3.764466 CTCGAGCTGGGCGGTCTT 61.764 66.667 0.00 0.00 37.99 3.01
72 73 3.708220 CTCGAGCTGGGCGGTCTTC 62.708 68.421 0.00 0.00 37.99 2.87
73 74 4.821589 CGAGCTGGGCGGTCTTCC 62.822 72.222 0.00 0.00 37.99 3.46
74 75 3.706373 GAGCTGGGCGGTCTTCCA 61.706 66.667 0.00 0.00 37.18 3.53
75 76 3.959991 GAGCTGGGCGGTCTTCCAC 62.960 68.421 0.00 0.00 37.18 4.02
77 78 3.322466 CTGGGCGGTCTTCCACCT 61.322 66.667 0.00 0.00 44.21 4.00
78 79 2.852075 TGGGCGGTCTTCCACCTT 60.852 61.111 0.00 0.00 44.21 3.50
79 80 2.359975 GGGCGGTCTTCCACCTTG 60.360 66.667 0.00 0.00 44.21 3.61
80 81 2.747686 GGCGGTCTTCCACCTTGA 59.252 61.111 0.00 0.00 44.21 3.02
81 82 1.671379 GGCGGTCTTCCACCTTGAC 60.671 63.158 0.00 0.00 44.21 3.18
82 83 2.027625 GCGGTCTTCCACCTTGACG 61.028 63.158 0.00 0.00 44.21 4.35
83 84 1.366366 CGGTCTTCCACCTTGACGT 59.634 57.895 0.00 0.00 44.21 4.34
84 85 0.944311 CGGTCTTCCACCTTGACGTG 60.944 60.000 0.00 0.00 44.21 4.49
105 106 4.057224 GGCACGGTGTGATGTGAA 57.943 55.556 10.24 0.00 38.36 3.18
106 107 1.868997 GGCACGGTGTGATGTGAAG 59.131 57.895 10.24 0.00 38.36 3.02
107 108 0.602638 GGCACGGTGTGATGTGAAGA 60.603 55.000 10.24 0.00 38.36 2.87
108 109 1.225855 GCACGGTGTGATGTGAAGAA 58.774 50.000 10.24 0.00 38.36 2.52
109 110 1.601903 GCACGGTGTGATGTGAAGAAA 59.398 47.619 10.24 0.00 38.36 2.52
110 111 2.226437 GCACGGTGTGATGTGAAGAAAT 59.774 45.455 10.24 0.00 38.36 2.17
111 112 3.813800 CACGGTGTGATGTGAAGAAATG 58.186 45.455 0.00 0.00 38.36 2.32
112 113 2.226437 ACGGTGTGATGTGAAGAAATGC 59.774 45.455 0.00 0.00 0.00 3.56
113 114 2.725759 CGGTGTGATGTGAAGAAATGCG 60.726 50.000 0.00 0.00 0.00 4.73
114 115 2.414559 GGTGTGATGTGAAGAAATGCGG 60.415 50.000 0.00 0.00 0.00 5.69
115 116 2.226437 GTGTGATGTGAAGAAATGCGGT 59.774 45.455 0.00 0.00 0.00 5.68
116 117 2.226200 TGTGATGTGAAGAAATGCGGTG 59.774 45.455 0.00 0.00 0.00 4.94
117 118 1.811965 TGATGTGAAGAAATGCGGTGG 59.188 47.619 0.00 0.00 0.00 4.61
118 119 2.083774 GATGTGAAGAAATGCGGTGGA 58.916 47.619 0.00 0.00 0.00 4.02
119 120 1.522668 TGTGAAGAAATGCGGTGGAG 58.477 50.000 0.00 0.00 0.00 3.86
120 121 1.071542 TGTGAAGAAATGCGGTGGAGA 59.928 47.619 0.00 0.00 0.00 3.71
121 122 2.151202 GTGAAGAAATGCGGTGGAGAA 58.849 47.619 0.00 0.00 0.00 2.87
122 123 2.160417 GTGAAGAAATGCGGTGGAGAAG 59.840 50.000 0.00 0.00 0.00 2.85
123 124 2.224523 TGAAGAAATGCGGTGGAGAAGT 60.225 45.455 0.00 0.00 0.00 3.01
124 125 3.007506 TGAAGAAATGCGGTGGAGAAGTA 59.992 43.478 0.00 0.00 0.00 2.24
125 126 3.252974 AGAAATGCGGTGGAGAAGTAG 57.747 47.619 0.00 0.00 0.00 2.57
126 127 2.832129 AGAAATGCGGTGGAGAAGTAGA 59.168 45.455 0.00 0.00 0.00 2.59
127 128 2.969628 AATGCGGTGGAGAAGTAGAG 57.030 50.000 0.00 0.00 0.00 2.43
128 129 1.115467 ATGCGGTGGAGAAGTAGAGG 58.885 55.000 0.00 0.00 0.00 3.69
129 130 1.142097 GCGGTGGAGAAGTAGAGGC 59.858 63.158 0.00 0.00 0.00 4.70
130 131 1.324005 GCGGTGGAGAAGTAGAGGCT 61.324 60.000 0.00 0.00 0.00 4.58
131 132 0.457851 CGGTGGAGAAGTAGAGGCTG 59.542 60.000 0.00 0.00 0.00 4.85
132 133 1.562783 GGTGGAGAAGTAGAGGCTGT 58.437 55.000 0.00 0.00 0.00 4.40
133 134 1.903183 GGTGGAGAAGTAGAGGCTGTT 59.097 52.381 0.00 0.00 0.00 3.16
134 135 2.354203 GGTGGAGAAGTAGAGGCTGTTG 60.354 54.545 0.00 0.00 0.00 3.33
135 136 2.563179 GTGGAGAAGTAGAGGCTGTTGA 59.437 50.000 0.00 0.00 0.00 3.18
136 137 2.563179 TGGAGAAGTAGAGGCTGTTGAC 59.437 50.000 0.00 0.00 0.00 3.18
137 138 2.563179 GGAGAAGTAGAGGCTGTTGACA 59.437 50.000 0.00 0.00 0.00 3.58
138 139 3.367910 GGAGAAGTAGAGGCTGTTGACAG 60.368 52.174 6.77 6.77 46.40 3.51
139 140 3.501349 AGAAGTAGAGGCTGTTGACAGA 58.499 45.455 14.98 0.00 46.59 3.41
140 141 3.898123 AGAAGTAGAGGCTGTTGACAGAA 59.102 43.478 14.98 0.00 46.59 3.02
141 142 3.951775 AGTAGAGGCTGTTGACAGAAG 57.048 47.619 14.98 0.00 46.59 2.85
142 143 3.501349 AGTAGAGGCTGTTGACAGAAGA 58.499 45.455 14.98 0.00 46.59 2.87
143 144 3.509575 AGTAGAGGCTGTTGACAGAAGAG 59.490 47.826 14.98 0.00 46.59 2.85
144 145 2.603021 AGAGGCTGTTGACAGAAGAGA 58.397 47.619 14.98 0.00 46.59 3.10
145 146 2.562298 AGAGGCTGTTGACAGAAGAGAG 59.438 50.000 14.98 0.00 46.59 3.20
146 147 1.001860 AGGCTGTTGACAGAAGAGAGC 59.998 52.381 14.98 0.00 46.59 4.09
147 148 1.001860 GGCTGTTGACAGAAGAGAGCT 59.998 52.381 14.98 0.00 46.59 4.09
148 149 2.067766 GCTGTTGACAGAAGAGAGCTG 58.932 52.381 14.98 0.00 46.59 4.24
149 150 2.288702 GCTGTTGACAGAAGAGAGCTGA 60.289 50.000 14.98 0.00 46.59 4.26
150 151 3.577667 CTGTTGACAGAAGAGAGCTGAG 58.422 50.000 5.19 0.00 46.59 3.35
151 152 2.288702 TGTTGACAGAAGAGAGCTGAGC 60.289 50.000 0.00 0.00 36.86 4.26
152 153 1.625511 TGACAGAAGAGAGCTGAGCA 58.374 50.000 7.39 0.00 36.86 4.26
153 154 1.545136 TGACAGAAGAGAGCTGAGCAG 59.455 52.381 7.39 0.00 36.86 4.24
154 155 1.545582 GACAGAAGAGAGCTGAGCAGT 59.454 52.381 7.39 0.00 36.86 4.40
155 156 1.545582 ACAGAAGAGAGCTGAGCAGTC 59.454 52.381 7.39 2.15 36.86 3.51
156 157 1.545136 CAGAAGAGAGCTGAGCAGTCA 59.455 52.381 7.39 0.00 35.39 3.41
157 158 2.029200 CAGAAGAGAGCTGAGCAGTCAA 60.029 50.000 7.39 0.00 35.39 3.18
158 159 2.231964 AGAAGAGAGCTGAGCAGTCAAG 59.768 50.000 7.39 0.00 30.14 3.02
159 160 1.631405 AGAGAGCTGAGCAGTCAAGT 58.369 50.000 7.39 0.00 30.14 3.16
160 161 1.273048 AGAGAGCTGAGCAGTCAAGTG 59.727 52.381 7.39 0.00 30.14 3.16
161 162 0.321021 AGAGCTGAGCAGTCAAGTGG 59.679 55.000 7.39 0.00 30.14 4.00
162 163 0.034616 GAGCTGAGCAGTCAAGTGGT 59.965 55.000 7.39 0.00 30.14 4.16
163 164 1.273606 GAGCTGAGCAGTCAAGTGGTA 59.726 52.381 7.39 0.00 30.14 3.25
164 165 1.001406 AGCTGAGCAGTCAAGTGGTAC 59.999 52.381 7.39 0.00 30.14 3.34
165 166 1.270305 GCTGAGCAGTCAAGTGGTACA 60.270 52.381 0.00 0.00 30.14 2.90
166 167 2.613977 GCTGAGCAGTCAAGTGGTACAT 60.614 50.000 0.00 0.00 33.65 2.29
167 168 3.257393 CTGAGCAGTCAAGTGGTACATC 58.743 50.000 0.00 0.00 33.65 3.06
168 169 2.632512 TGAGCAGTCAAGTGGTACATCA 59.367 45.455 0.00 0.00 44.52 3.07
169 170 2.996621 GAGCAGTCAAGTGGTACATCAC 59.003 50.000 0.00 0.00 44.52 3.06
177 178 4.157120 GGTACATCACCGCGGGCT 62.157 66.667 31.76 10.64 37.63 5.19
178 179 2.585247 GTACATCACCGCGGGCTC 60.585 66.667 31.76 8.47 0.00 4.70
179 180 3.845259 TACATCACCGCGGGCTCC 61.845 66.667 31.76 0.00 0.00 4.70
181 182 4.552365 CATCACCGCGGGCTCCAT 62.552 66.667 31.76 10.39 0.00 3.41
182 183 4.241555 ATCACCGCGGGCTCCATC 62.242 66.667 31.76 0.00 0.00 3.51
184 185 4.552365 CACCGCGGGCTCCATCAT 62.552 66.667 31.76 0.57 0.00 2.45
185 186 4.241555 ACCGCGGGCTCCATCATC 62.242 66.667 31.76 0.00 0.00 2.92
186 187 4.996434 CCGCGGGCTCCATCATCC 62.996 72.222 20.10 0.00 0.00 3.51
187 188 4.240103 CGCGGGCTCCATCATCCA 62.240 66.667 0.00 0.00 0.00 3.41
188 189 2.433446 GCGGGCTCCATCATCCAT 59.567 61.111 0.00 0.00 0.00 3.41
189 190 1.970114 GCGGGCTCCATCATCCATG 60.970 63.158 0.00 0.00 0.00 3.66
196 197 3.031916 CCATCATCCATGGCTGGTC 57.968 57.895 15.42 0.00 46.18 4.02
197 198 0.887836 CCATCATCCATGGCTGGTCG 60.888 60.000 15.42 0.00 46.18 4.79
198 199 0.887836 CATCATCCATGGCTGGTCGG 60.888 60.000 15.42 0.00 43.61 4.79
199 200 2.687418 ATCATCCATGGCTGGTCGGC 62.687 60.000 15.42 0.00 43.61 5.54
206 207 1.365999 TGGCTGGTCGGCATATACG 59.634 57.895 4.06 0.00 44.12 3.06
207 208 2.027625 GGCTGGTCGGCATATACGC 61.028 63.158 4.06 0.00 38.25 4.42
208 209 2.372690 GCTGGTCGGCATATACGCG 61.373 63.158 3.53 3.53 0.00 6.01
209 210 2.355363 TGGTCGGCATATACGCGC 60.355 61.111 5.73 0.00 0.00 6.86
210 211 3.110178 GGTCGGCATATACGCGCC 61.110 66.667 5.73 0.00 45.28 6.53
215 216 3.777925 GCATATACGCGCCAGCCG 61.778 66.667 5.73 0.00 41.18 5.52
216 217 3.112075 CATATACGCGCCAGCCGG 61.112 66.667 5.73 0.00 41.18 6.13
217 218 3.612681 ATATACGCGCCAGCCGGT 61.613 61.111 5.73 0.00 41.18 5.28
218 219 3.858868 ATATACGCGCCAGCCGGTG 62.859 63.158 5.73 0.00 46.34 4.94
229 230 2.045926 GCCGGTGCTCAGGTTCAT 60.046 61.111 1.90 0.00 33.53 2.57
230 231 1.675641 GCCGGTGCTCAGGTTCATT 60.676 57.895 1.90 0.00 33.53 2.57
231 232 1.648467 GCCGGTGCTCAGGTTCATTC 61.648 60.000 1.90 0.00 33.53 2.67
232 233 0.321564 CCGGTGCTCAGGTTCATTCA 60.322 55.000 0.00 0.00 0.00 2.57
233 234 1.679944 CCGGTGCTCAGGTTCATTCAT 60.680 52.381 0.00 0.00 0.00 2.57
234 235 1.667724 CGGTGCTCAGGTTCATTCATC 59.332 52.381 0.00 0.00 0.00 2.92
235 236 1.667724 GGTGCTCAGGTTCATTCATCG 59.332 52.381 0.00 0.00 0.00 3.84
236 237 2.621338 GTGCTCAGGTTCATTCATCGA 58.379 47.619 0.00 0.00 0.00 3.59
237 238 2.606725 GTGCTCAGGTTCATTCATCGAG 59.393 50.000 0.00 0.00 0.00 4.04
238 239 2.234661 TGCTCAGGTTCATTCATCGAGT 59.765 45.455 0.00 0.00 0.00 4.18
239 240 2.606725 GCTCAGGTTCATTCATCGAGTG 59.393 50.000 0.00 0.00 0.00 3.51
240 241 2.606725 CTCAGGTTCATTCATCGAGTGC 59.393 50.000 0.00 0.00 0.00 4.40
241 242 1.325640 CAGGTTCATTCATCGAGTGCG 59.674 52.381 0.00 0.00 39.35 5.34
242 243 0.652592 GGTTCATTCATCGAGTGCGG 59.347 55.000 0.00 0.00 38.28 5.69
243 244 1.640428 GTTCATTCATCGAGTGCGGA 58.360 50.000 0.00 0.00 38.28 5.54
244 245 1.590238 GTTCATTCATCGAGTGCGGAG 59.410 52.381 0.00 0.00 38.28 4.63
245 246 1.102978 TCATTCATCGAGTGCGGAGA 58.897 50.000 0.00 0.00 38.28 3.71
246 247 1.066152 TCATTCATCGAGTGCGGAGAG 59.934 52.381 0.00 0.00 38.28 3.20
247 248 0.387202 ATTCATCGAGTGCGGAGAGG 59.613 55.000 0.00 0.00 38.28 3.69
248 249 1.667154 TTCATCGAGTGCGGAGAGGG 61.667 60.000 0.00 0.00 38.28 4.30
249 250 2.121538 CATCGAGTGCGGAGAGGGA 61.122 63.158 0.00 0.00 38.28 4.20
250 251 1.152652 ATCGAGTGCGGAGAGGGAT 60.153 57.895 0.00 0.00 38.28 3.85
251 252 1.459455 ATCGAGTGCGGAGAGGGATG 61.459 60.000 0.00 0.00 38.28 3.51
252 253 2.121538 CGAGTGCGGAGAGGGATGA 61.122 63.158 0.00 0.00 0.00 2.92
253 254 1.459455 CGAGTGCGGAGAGGGATGAT 61.459 60.000 0.00 0.00 0.00 2.45
254 255 1.621992 GAGTGCGGAGAGGGATGATA 58.378 55.000 0.00 0.00 0.00 2.15
255 256 1.964223 GAGTGCGGAGAGGGATGATAA 59.036 52.381 0.00 0.00 0.00 1.75
256 257 1.967066 AGTGCGGAGAGGGATGATAAG 59.033 52.381 0.00 0.00 0.00 1.73
257 258 1.001406 GTGCGGAGAGGGATGATAAGG 59.999 57.143 0.00 0.00 0.00 2.69
258 259 1.133167 TGCGGAGAGGGATGATAAGGA 60.133 52.381 0.00 0.00 0.00 3.36
259 260 2.183679 GCGGAGAGGGATGATAAGGAT 58.816 52.381 0.00 0.00 0.00 3.24
260 261 2.093764 GCGGAGAGGGATGATAAGGATG 60.094 54.545 0.00 0.00 0.00 3.51
261 262 3.435275 CGGAGAGGGATGATAAGGATGA 58.565 50.000 0.00 0.00 0.00 2.92
262 263 3.446873 CGGAGAGGGATGATAAGGATGAG 59.553 52.174 0.00 0.00 0.00 2.90
263 264 3.197549 GGAGAGGGATGATAAGGATGAGC 59.802 52.174 0.00 0.00 0.00 4.26
264 265 3.837146 GAGAGGGATGATAAGGATGAGCA 59.163 47.826 0.00 0.00 0.00 4.26
265 266 4.437023 AGAGGGATGATAAGGATGAGCAT 58.563 43.478 0.00 0.00 0.00 3.79
266 267 4.225492 AGAGGGATGATAAGGATGAGCATG 59.775 45.833 0.00 0.00 0.00 4.06
267 268 3.015327 GGGATGATAAGGATGAGCATGC 58.985 50.000 10.51 10.51 32.22 4.06
268 269 3.015327 GGATGATAAGGATGAGCATGCC 58.985 50.000 15.66 6.65 25.59 4.40
269 270 3.560668 GGATGATAAGGATGAGCATGCCA 60.561 47.826 15.66 12.73 25.59 4.92
270 271 2.854963 TGATAAGGATGAGCATGCCAC 58.145 47.619 15.66 9.87 0.00 5.01
271 272 1.802960 GATAAGGATGAGCATGCCACG 59.197 52.381 15.66 0.00 0.00 4.94
272 273 0.541392 TAAGGATGAGCATGCCACGT 59.459 50.000 15.66 10.54 0.00 4.49
273 274 1.028330 AAGGATGAGCATGCCACGTG 61.028 55.000 15.66 9.08 0.00 4.49
274 275 1.450134 GGATGAGCATGCCACGTGA 60.450 57.895 19.30 0.00 0.00 4.35
275 276 1.434622 GGATGAGCATGCCACGTGAG 61.435 60.000 19.30 8.47 0.00 3.51
276 277 2.044832 GATGAGCATGCCACGTGAGC 62.045 60.000 19.30 18.80 0.00 4.26
277 278 2.743538 GAGCATGCCACGTGAGCA 60.744 61.111 26.46 26.46 45.94 4.26
278 279 2.281692 AGCATGCCACGTGAGCAA 60.282 55.556 27.49 15.65 44.83 3.91
279 280 2.177531 GCATGCCACGTGAGCAAG 59.822 61.111 27.49 24.54 44.83 4.01
280 281 2.620112 GCATGCCACGTGAGCAAGT 61.620 57.895 27.49 14.74 44.83 3.16
281 282 1.499056 CATGCCACGTGAGCAAGTC 59.501 57.895 27.49 6.16 44.83 3.01
282 283 1.071299 ATGCCACGTGAGCAAGTCA 59.929 52.632 27.49 10.81 44.83 3.41
283 284 0.534877 ATGCCACGTGAGCAAGTCAA 60.535 50.000 27.49 10.22 44.83 3.18
284 285 1.279840 GCCACGTGAGCAAGTCAAC 59.720 57.895 19.30 0.00 36.74 3.18
285 286 1.564622 CCACGTGAGCAAGTCAACG 59.435 57.895 19.30 0.00 36.74 4.10
286 287 1.564622 CACGTGAGCAAGTCAACGG 59.435 57.895 10.90 0.00 36.74 4.44
287 288 1.143183 ACGTGAGCAAGTCAACGGT 59.857 52.632 0.00 0.00 36.74 4.83
288 289 0.461339 ACGTGAGCAAGTCAACGGTT 60.461 50.000 0.00 0.00 36.74 4.44
289 290 1.202440 ACGTGAGCAAGTCAACGGTTA 60.202 47.619 0.00 0.00 36.74 2.85
290 291 1.455786 CGTGAGCAAGTCAACGGTTAG 59.544 52.381 0.00 0.00 36.74 2.34
291 292 1.798813 GTGAGCAAGTCAACGGTTAGG 59.201 52.381 0.00 0.00 36.74 2.69
292 293 1.689813 TGAGCAAGTCAACGGTTAGGA 59.310 47.619 0.00 0.00 29.64 2.94
293 294 2.067013 GAGCAAGTCAACGGTTAGGAC 58.933 52.381 0.00 0.00 0.00 3.85
294 295 1.154197 GCAAGTCAACGGTTAGGACC 58.846 55.000 7.50 0.00 42.87 4.46
295 296 1.541670 GCAAGTCAACGGTTAGGACCA 60.542 52.381 7.50 0.00 46.91 4.02
296 297 2.413837 CAAGTCAACGGTTAGGACCAG 58.586 52.381 7.50 0.00 46.91 4.00
297 298 1.713297 AGTCAACGGTTAGGACCAGT 58.287 50.000 7.50 0.00 46.91 4.00
298 299 1.617357 AGTCAACGGTTAGGACCAGTC 59.383 52.381 7.50 0.00 46.91 3.51
299 300 1.342174 GTCAACGGTTAGGACCAGTCA 59.658 52.381 0.00 0.00 46.91 3.41
300 301 2.040939 TCAACGGTTAGGACCAGTCAA 58.959 47.619 0.00 0.00 46.91 3.18
301 302 2.140717 CAACGGTTAGGACCAGTCAAC 58.859 52.381 0.00 0.00 46.91 3.18
302 303 0.316204 ACGGTTAGGACCAGTCAACG 59.684 55.000 0.00 0.00 46.91 4.10
303 304 0.316204 CGGTTAGGACCAGTCAACGT 59.684 55.000 0.00 0.00 46.91 3.99
304 305 1.541147 CGGTTAGGACCAGTCAACGTA 59.459 52.381 0.00 0.00 46.91 3.57
305 306 2.165030 CGGTTAGGACCAGTCAACGTAT 59.835 50.000 0.00 0.00 46.91 3.06
306 307 3.378112 CGGTTAGGACCAGTCAACGTATA 59.622 47.826 0.00 0.00 46.91 1.47
307 308 4.676546 GGTTAGGACCAGTCAACGTATAC 58.323 47.826 0.00 0.00 45.77 1.47
308 309 4.440663 GGTTAGGACCAGTCAACGTATACC 60.441 50.000 0.00 0.00 45.77 2.73
309 310 2.811410 AGGACCAGTCAACGTATACCA 58.189 47.619 0.00 0.00 0.00 3.25
310 311 2.494870 AGGACCAGTCAACGTATACCAC 59.505 50.000 0.00 0.00 0.00 4.16
311 312 2.231964 GGACCAGTCAACGTATACCACA 59.768 50.000 0.00 0.00 0.00 4.17
312 313 3.118884 GGACCAGTCAACGTATACCACAT 60.119 47.826 0.00 0.00 0.00 3.21
313 314 4.110482 GACCAGTCAACGTATACCACATC 58.890 47.826 0.00 0.00 0.00 3.06
314 315 3.512329 ACCAGTCAACGTATACCACATCA 59.488 43.478 0.00 0.00 0.00 3.07
315 316 4.112634 CCAGTCAACGTATACCACATCAG 58.887 47.826 0.00 0.00 0.00 2.90
316 317 3.551890 CAGTCAACGTATACCACATCAGC 59.448 47.826 0.00 0.00 0.00 4.26
317 318 2.534349 GTCAACGTATACCACATCAGCG 59.466 50.000 0.00 0.00 0.00 5.18
318 319 2.424246 TCAACGTATACCACATCAGCGA 59.576 45.455 0.00 0.00 0.00 4.93
319 320 3.119424 TCAACGTATACCACATCAGCGAA 60.119 43.478 0.00 0.00 0.00 4.70
320 321 3.513680 ACGTATACCACATCAGCGAAA 57.486 42.857 0.00 0.00 0.00 3.46
321 322 4.054780 ACGTATACCACATCAGCGAAAT 57.945 40.909 0.00 0.00 0.00 2.17
322 323 5.190992 ACGTATACCACATCAGCGAAATA 57.809 39.130 0.00 0.00 0.00 1.40
323 324 4.980434 ACGTATACCACATCAGCGAAATAC 59.020 41.667 0.00 0.00 0.00 1.89
324 325 4.088071 CGTATACCACATCAGCGAAATACG 59.912 45.833 0.00 0.00 45.66 3.06
325 326 2.380084 ACCACATCAGCGAAATACGT 57.620 45.000 0.00 0.00 44.60 3.57
326 327 2.268298 ACCACATCAGCGAAATACGTC 58.732 47.619 0.00 0.00 44.60 4.34
327 328 1.255342 CCACATCAGCGAAATACGTCG 59.745 52.381 0.00 0.00 44.60 5.12
328 329 1.255342 CACATCAGCGAAATACGTCGG 59.745 52.381 0.00 0.00 44.60 4.79
329 330 1.133598 ACATCAGCGAAATACGTCGGA 59.866 47.619 0.00 0.00 44.60 4.55
330 331 2.223735 ACATCAGCGAAATACGTCGGAT 60.224 45.455 0.00 0.00 44.60 4.18
331 332 3.004002 ACATCAGCGAAATACGTCGGATA 59.996 43.478 0.00 0.00 44.60 2.59
332 333 2.990941 TCAGCGAAATACGTCGGATAC 58.009 47.619 0.00 0.00 44.60 2.24
333 334 2.355444 TCAGCGAAATACGTCGGATACA 59.645 45.455 0.00 0.00 44.60 2.29
334 335 2.719556 CAGCGAAATACGTCGGATACAG 59.280 50.000 0.00 0.00 44.60 2.74
335 336 2.357009 AGCGAAATACGTCGGATACAGT 59.643 45.455 0.00 0.00 44.60 3.55
336 337 3.561310 AGCGAAATACGTCGGATACAGTA 59.439 43.478 0.00 0.00 44.60 2.74
337 338 3.904824 GCGAAATACGTCGGATACAGTAG 59.095 47.826 0.00 0.00 44.60 2.57
338 339 4.319046 GCGAAATACGTCGGATACAGTAGA 60.319 45.833 0.00 0.00 44.60 2.59
339 340 5.372445 CGAAATACGTCGGATACAGTAGAG 58.628 45.833 0.00 0.00 37.37 2.43
340 341 5.050499 CGAAATACGTCGGATACAGTAGAGT 60.050 44.000 0.00 0.00 37.37 3.24
341 342 5.670149 AATACGTCGGATACAGTAGAGTG 57.330 43.478 0.00 0.00 0.00 3.51
342 343 1.669779 ACGTCGGATACAGTAGAGTGC 59.330 52.381 0.00 0.00 0.00 4.40
343 344 1.002684 CGTCGGATACAGTAGAGTGCC 60.003 57.143 0.00 0.00 0.00 5.01
344 345 2.022195 GTCGGATACAGTAGAGTGCCA 58.978 52.381 0.00 0.00 0.00 4.92
345 346 2.022195 TCGGATACAGTAGAGTGCCAC 58.978 52.381 0.00 0.00 0.00 5.01
346 347 1.749063 CGGATACAGTAGAGTGCCACA 59.251 52.381 0.00 0.00 0.00 4.17
347 348 2.362397 CGGATACAGTAGAGTGCCACAT 59.638 50.000 0.00 0.00 0.00 3.21
348 349 3.181475 CGGATACAGTAGAGTGCCACATT 60.181 47.826 0.00 0.00 0.00 2.71
349 350 4.680708 CGGATACAGTAGAGTGCCACATTT 60.681 45.833 0.00 0.00 0.00 2.32
350 351 5.451381 CGGATACAGTAGAGTGCCACATTTA 60.451 44.000 0.00 0.00 0.00 1.40
351 352 5.753921 GGATACAGTAGAGTGCCACATTTAC 59.246 44.000 0.00 0.00 0.00 2.01
352 353 3.585862 ACAGTAGAGTGCCACATTTACG 58.414 45.455 0.00 0.00 0.00 3.18
353 354 2.348666 CAGTAGAGTGCCACATTTACGC 59.651 50.000 0.00 0.00 0.00 4.42
354 355 2.028476 AGTAGAGTGCCACATTTACGCA 60.028 45.455 0.00 0.00 0.00 5.24
355 356 1.890876 AGAGTGCCACATTTACGCAA 58.109 45.000 0.00 0.00 33.57 4.85
356 357 2.436417 AGAGTGCCACATTTACGCAAT 58.564 42.857 0.00 0.00 33.57 3.56
357 358 2.420022 AGAGTGCCACATTTACGCAATC 59.580 45.455 0.00 0.82 45.34 2.67
358 359 2.420022 GAGTGCCACATTTACGCAATCT 59.580 45.455 0.00 0.00 42.60 2.40
359 360 2.420022 AGTGCCACATTTACGCAATCTC 59.580 45.455 0.00 0.00 33.57 2.75
360 361 2.161410 GTGCCACATTTACGCAATCTCA 59.839 45.455 0.00 0.00 33.57 3.27
361 362 2.419673 TGCCACATTTACGCAATCTCAG 59.580 45.455 0.00 0.00 0.00 3.35
362 363 2.420022 GCCACATTTACGCAATCTCAGT 59.580 45.455 0.00 0.00 0.00 3.41
363 364 3.728864 GCCACATTTACGCAATCTCAGTG 60.729 47.826 0.00 0.00 0.00 3.66
364 365 3.684305 CCACATTTACGCAATCTCAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
365 366 4.436050 CCACATTTACGCAATCTCAGTGAC 60.436 45.833 0.00 0.00 0.00 3.67
366 367 3.684788 ACATTTACGCAATCTCAGTGACC 59.315 43.478 0.00 0.00 0.00 4.02
367 368 1.990799 TTACGCAATCTCAGTGACCG 58.009 50.000 0.00 0.00 0.00 4.79
368 369 0.885879 TACGCAATCTCAGTGACCGT 59.114 50.000 0.00 0.00 33.79 4.83
369 370 0.885879 ACGCAATCTCAGTGACCGTA 59.114 50.000 0.00 0.00 0.00 4.02
370 371 1.476891 ACGCAATCTCAGTGACCGTAT 59.523 47.619 0.00 0.00 0.00 3.06
371 372 2.094182 ACGCAATCTCAGTGACCGTATT 60.094 45.455 0.00 0.00 0.00 1.89
372 373 2.535984 CGCAATCTCAGTGACCGTATTC 59.464 50.000 0.00 0.00 0.00 1.75
373 374 3.735208 CGCAATCTCAGTGACCGTATTCT 60.735 47.826 0.00 0.00 0.00 2.40
374 375 3.553511 GCAATCTCAGTGACCGTATTCTG 59.446 47.826 0.00 0.00 0.00 3.02
375 376 4.678044 GCAATCTCAGTGACCGTATTCTGA 60.678 45.833 0.00 0.00 35.92 3.27
376 377 4.640789 ATCTCAGTGACCGTATTCTGAC 57.359 45.455 0.00 0.00 34.05 3.51
377 378 3.418047 TCTCAGTGACCGTATTCTGACA 58.582 45.455 0.00 0.00 34.05 3.58
378 379 3.190744 TCTCAGTGACCGTATTCTGACAC 59.809 47.826 0.00 0.00 34.05 3.67
379 380 3.154710 TCAGTGACCGTATTCTGACACT 58.845 45.455 0.00 0.00 38.79 3.55
380 381 3.572682 TCAGTGACCGTATTCTGACACTT 59.427 43.478 0.00 0.00 36.64 3.16
381 382 3.921021 CAGTGACCGTATTCTGACACTTC 59.079 47.826 0.00 0.00 36.64 3.01
382 383 2.915463 GTGACCGTATTCTGACACTTCG 59.085 50.000 0.00 0.00 0.00 3.79
383 384 2.555325 TGACCGTATTCTGACACTTCGT 59.445 45.455 0.00 0.00 0.00 3.85
384 385 2.915463 GACCGTATTCTGACACTTCGTG 59.085 50.000 0.00 0.00 39.75 4.35
385 386 2.555325 ACCGTATTCTGACACTTCGTGA 59.445 45.455 0.38 0.00 36.96 4.35
386 387 3.005050 ACCGTATTCTGACACTTCGTGAA 59.995 43.478 0.38 0.00 36.96 3.18
387 388 4.174009 CCGTATTCTGACACTTCGTGAAT 58.826 43.478 0.38 0.00 36.96 2.57
388 389 5.106038 ACCGTATTCTGACACTTCGTGAATA 60.106 40.000 0.38 0.00 36.96 1.75
389 390 5.229469 CCGTATTCTGACACTTCGTGAATAC 59.771 44.000 11.76 11.76 41.46 1.89
390 391 5.798434 CGTATTCTGACACTTCGTGAATACA 59.202 40.000 18.13 0.00 42.91 2.29
391 392 6.021390 CGTATTCTGACACTTCGTGAATACAG 60.021 42.308 18.13 10.67 42.91 2.74
392 393 4.848562 TCTGACACTTCGTGAATACAGT 57.151 40.909 0.38 0.00 36.96 3.55
393 394 5.196341 TCTGACACTTCGTGAATACAGTT 57.804 39.130 0.38 0.00 36.96 3.16
394 395 6.321848 TCTGACACTTCGTGAATACAGTTA 57.678 37.500 0.38 0.00 36.96 2.24
395 396 6.147581 TCTGACACTTCGTGAATACAGTTAC 58.852 40.000 0.38 0.00 36.96 2.50
396 397 5.224888 TGACACTTCGTGAATACAGTTACC 58.775 41.667 0.38 0.00 36.96 2.85
397 398 5.204409 ACACTTCGTGAATACAGTTACCA 57.796 39.130 0.38 0.00 36.96 3.25
398 399 5.603596 ACACTTCGTGAATACAGTTACCAA 58.396 37.500 0.38 0.00 36.96 3.67
399 400 6.050432 ACACTTCGTGAATACAGTTACCAAA 58.950 36.000 0.38 0.00 36.96 3.28
400 401 6.202188 ACACTTCGTGAATACAGTTACCAAAG 59.798 38.462 0.38 0.00 36.96 2.77
401 402 6.202188 CACTTCGTGAATACAGTTACCAAAGT 59.798 38.462 0.00 0.00 35.23 2.66
402 403 6.202188 ACTTCGTGAATACAGTTACCAAAGTG 59.798 38.462 0.00 0.00 41.13 3.16
403 404 5.845103 TCGTGAATACAGTTACCAAAGTGA 58.155 37.500 0.18 0.00 38.14 3.41
404 405 6.282167 TCGTGAATACAGTTACCAAAGTGAA 58.718 36.000 0.18 0.00 38.14 3.18
405 406 6.201425 TCGTGAATACAGTTACCAAAGTGAAC 59.799 38.462 0.18 0.00 38.14 3.18
406 407 6.565247 CGTGAATACAGTTACCAAAGTGAACC 60.565 42.308 0.18 0.00 38.14 3.62
407 408 5.766174 TGAATACAGTTACCAAAGTGAACCC 59.234 40.000 0.18 0.00 38.14 4.11
408 409 3.945640 ACAGTTACCAAAGTGAACCCT 57.054 42.857 0.18 0.00 38.14 4.34
409 410 6.691255 ATACAGTTACCAAAGTGAACCCTA 57.309 37.500 0.18 0.00 38.14 3.53
410 411 5.376756 ACAGTTACCAAAGTGAACCCTAA 57.623 39.130 0.18 0.00 38.14 2.69
411 412 5.374071 ACAGTTACCAAAGTGAACCCTAAG 58.626 41.667 0.18 0.00 38.14 2.18
412 413 5.131475 ACAGTTACCAAAGTGAACCCTAAGA 59.869 40.000 0.18 0.00 38.14 2.10
413 414 5.469084 CAGTTACCAAAGTGAACCCTAAGAC 59.531 44.000 0.00 0.00 38.14 3.01
414 415 3.503800 ACCAAAGTGAACCCTAAGACC 57.496 47.619 0.00 0.00 0.00 3.85
415 416 2.781174 ACCAAAGTGAACCCTAAGACCA 59.219 45.455 0.00 0.00 0.00 4.02
416 417 3.203487 ACCAAAGTGAACCCTAAGACCAA 59.797 43.478 0.00 0.00 0.00 3.67
417 418 3.821033 CCAAAGTGAACCCTAAGACCAAG 59.179 47.826 0.00 0.00 0.00 3.61
418 419 4.461198 CAAAGTGAACCCTAAGACCAAGT 58.539 43.478 0.00 0.00 0.00 3.16
419 420 4.790718 AAGTGAACCCTAAGACCAAGTT 57.209 40.909 0.00 0.00 0.00 2.66
420 421 4.353383 AGTGAACCCTAAGACCAAGTTC 57.647 45.455 0.00 0.00 37.83 3.01
421 422 3.714798 AGTGAACCCTAAGACCAAGTTCA 59.285 43.478 0.00 0.00 43.23 3.18
422 423 4.065789 GTGAACCCTAAGACCAAGTTCAG 58.934 47.826 4.26 0.00 45.30 3.02
423 424 3.072476 TGAACCCTAAGACCAAGTTCAGG 59.928 47.826 0.00 0.00 41.25 3.86
424 425 2.702748 ACCCTAAGACCAAGTTCAGGT 58.297 47.619 0.00 0.00 43.46 4.00
425 426 3.865571 ACCCTAAGACCAAGTTCAGGTA 58.134 45.455 0.00 0.00 40.09 3.08
426 427 3.581770 ACCCTAAGACCAAGTTCAGGTAC 59.418 47.826 0.00 0.00 40.09 3.34
427 428 3.838903 CCCTAAGACCAAGTTCAGGTACT 59.161 47.826 0.00 0.00 40.09 2.73
428 429 5.021458 CCCTAAGACCAAGTTCAGGTACTA 58.979 45.833 0.00 0.00 40.09 1.82
429 430 5.661759 CCCTAAGACCAAGTTCAGGTACTAT 59.338 44.000 0.00 0.00 40.09 2.12
430 431 6.156429 CCCTAAGACCAAGTTCAGGTACTATT 59.844 42.308 0.00 0.00 40.09 1.73
431 432 7.042335 CCTAAGACCAAGTTCAGGTACTATTG 58.958 42.308 0.00 0.00 40.09 1.90
432 433 6.681729 AAGACCAAGTTCAGGTACTATTGA 57.318 37.500 0.00 0.00 40.09 2.57
433 434 6.875972 AGACCAAGTTCAGGTACTATTGAT 57.124 37.500 0.00 0.00 40.09 2.57
434 435 6.644347 AGACCAAGTTCAGGTACTATTGATG 58.356 40.000 0.00 0.00 40.09 3.07
435 436 6.213600 AGACCAAGTTCAGGTACTATTGATGT 59.786 38.462 0.00 0.00 40.09 3.06
436 437 7.399191 AGACCAAGTTCAGGTACTATTGATGTA 59.601 37.037 0.00 0.00 40.09 2.29
437 438 7.913789 ACCAAGTTCAGGTACTATTGATGTAA 58.086 34.615 0.00 0.00 37.67 2.41
438 439 8.548877 ACCAAGTTCAGGTACTATTGATGTAAT 58.451 33.333 0.00 0.00 37.67 1.89
439 440 9.396022 CCAAGTTCAGGTACTATTGATGTAATT 57.604 33.333 0.00 0.00 36.02 1.40
533 561 2.047179 GGTGGAACTCTGGCGTCC 60.047 66.667 0.00 0.00 36.74 4.79
747 786 1.808945 CGAAGCCATTCTTGTGCTCTT 59.191 47.619 0.00 0.00 34.56 2.85
1049 1263 1.270358 ACTTTTCTCGCTCACCCTCAC 60.270 52.381 0.00 0.00 0.00 3.51
1831 2051 0.325671 CTCACTCTCCCTTGCCCCTA 60.326 60.000 0.00 0.00 0.00 3.53
2075 2295 5.948992 AACCAGATTACAAACTCAAGCTC 57.051 39.130 0.00 0.00 0.00 4.09
2076 2296 4.327680 ACCAGATTACAAACTCAAGCTCC 58.672 43.478 0.00 0.00 0.00 4.70
2077 2297 4.202461 ACCAGATTACAAACTCAAGCTCCA 60.202 41.667 0.00 0.00 0.00 3.86
2078 2298 4.761739 CCAGATTACAAACTCAAGCTCCAA 59.238 41.667 0.00 0.00 0.00 3.53
2079 2299 5.106396 CCAGATTACAAACTCAAGCTCCAAG 60.106 44.000 0.00 0.00 0.00 3.61
2080 2300 4.457257 AGATTACAAACTCAAGCTCCAAGC 59.543 41.667 0.00 0.00 42.84 4.01
2219 2448 1.195448 CAACAAGACCGACATCAGTGC 59.805 52.381 0.00 0.00 0.00 4.40
2271 2500 3.443681 TGCTAATAAACAGGAAAGCTGCC 59.556 43.478 0.00 0.00 0.00 4.85
2320 2552 0.877071 CAATGTGGTGCAGGTGACTC 59.123 55.000 0.00 0.00 40.21 3.36
2326 2558 1.544825 GGTGCAGGTGACTCTGGCTA 61.545 60.000 0.00 0.00 40.21 3.93
2691 2923 1.947212 GCTGACATCATGGACAGCACA 60.947 52.381 24.54 0.61 44.61 4.57
2835 3067 1.272490 GCCGGCTACATATGTGCTCTA 59.728 52.381 22.15 0.00 0.00 2.43
2986 3218 0.376852 GCACAGAACTGCGACAAACA 59.623 50.000 1.46 0.00 0.00 2.83
3232 3482 0.108138 AGCGGGAAGAGTATGTGTGC 60.108 55.000 0.00 0.00 0.00 4.57
3512 3775 6.708054 ACTGAAATGTGTGTTTTGAAACCAAA 59.292 30.769 4.32 0.00 38.11 3.28
3702 3965 3.564225 CCGAAGTTACCTTAATCATGCCC 59.436 47.826 0.00 0.00 0.00 5.36
3706 3969 4.278310 AGTTACCTTAATCATGCCCCAAC 58.722 43.478 0.00 0.00 0.00 3.77
3930 4193 3.963383 AGACTTGCGTTACCAGTTTTG 57.037 42.857 0.00 0.00 0.00 2.44
3976 4239 5.337578 AAGTTATGTTTTGTTGTGCAGGT 57.662 34.783 0.00 0.00 0.00 4.00
3977 4240 6.458232 AAGTTATGTTTTGTTGTGCAGGTA 57.542 33.333 0.00 0.00 0.00 3.08
4030 4293 2.872245 GTGCTTGTTCTTGCTAGTGACA 59.128 45.455 0.00 0.00 0.00 3.58
4031 4294 2.872245 TGCTTGTTCTTGCTAGTGACAC 59.128 45.455 0.00 0.00 0.00 3.67
4106 4369 1.563879 CATGTTATGGTCTCCCACCCA 59.436 52.381 0.00 0.00 46.18 4.51
4209 4472 7.383300 CCAAACCATTCTGAAATTCTTGTCTTC 59.617 37.037 0.00 0.00 0.00 2.87
4210 4473 7.587037 AACCATTCTGAAATTCTTGTCTTCA 57.413 32.000 0.00 0.00 0.00 3.02
4211 4474 6.974965 ACCATTCTGAAATTCTTGTCTTCAC 58.025 36.000 0.00 0.00 0.00 3.18
4212 4475 6.015940 ACCATTCTGAAATTCTTGTCTTCACC 60.016 38.462 0.00 0.00 0.00 4.02
4213 4476 6.208204 CCATTCTGAAATTCTTGTCTTCACCT 59.792 38.462 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.302431 AGTATGGTTGTGCGCTGCA 60.302 52.632 9.73 4.86 35.60 4.41
3 4 1.135315 GCAGTATGGTTGTGCGCTG 59.865 57.895 9.73 0.00 35.86 5.18
21 22 4.803426 GCCCCACTCTGCGTCGAG 62.803 72.222 0.00 2.21 37.07 4.04
39 40 4.500116 GAGCTCCTCCCGTGCGAC 62.500 72.222 0.87 0.00 36.07 5.19
42 43 4.200283 CTCGAGCTCCTCCCGTGC 62.200 72.222 8.47 0.00 0.00 5.34
43 44 4.200283 GCTCGAGCTCCTCCCGTG 62.200 72.222 29.88 0.00 38.21 4.94
54 55 3.708220 GAAGACCGCCCAGCTCGAG 62.708 68.421 8.45 8.45 0.00 4.04
55 56 3.760035 GAAGACCGCCCAGCTCGA 61.760 66.667 0.00 0.00 0.00 4.04
56 57 4.821589 GGAAGACCGCCCAGCTCG 62.822 72.222 0.00 0.00 0.00 5.03
57 58 3.706373 TGGAAGACCGCCCAGCTC 61.706 66.667 0.00 0.00 39.42 4.09
58 59 4.021925 GTGGAAGACCGCCCAGCT 62.022 66.667 0.00 0.00 40.47 4.24
66 67 2.914379 CACGTCAAGGTGGAAGACC 58.086 57.895 0.00 0.00 46.58 3.85
73 74 3.041940 GCCGTCCACGTCAAGGTG 61.042 66.667 0.00 0.00 37.74 4.00
74 75 3.542676 TGCCGTCCACGTCAAGGT 61.543 61.111 0.00 0.00 37.74 3.50
75 76 3.041940 GTGCCGTCCACGTCAAGG 61.042 66.667 0.00 0.00 37.74 3.61
82 83 3.876589 ATCACACCGTGCCGTCCAC 62.877 63.158 0.00 0.00 41.15 4.02
83 84 3.621805 ATCACACCGTGCCGTCCA 61.622 61.111 0.00 0.00 32.98 4.02
84 85 3.118454 CATCACACCGTGCCGTCC 61.118 66.667 0.00 0.00 32.98 4.79
85 86 2.357034 ACATCACACCGTGCCGTC 60.357 61.111 0.00 0.00 32.98 4.79
86 87 2.652382 TTCACATCACACCGTGCCGT 62.652 55.000 0.00 0.00 32.98 5.68
87 88 1.900585 CTTCACATCACACCGTGCCG 61.901 60.000 0.00 0.00 32.98 5.69
88 89 0.602638 TCTTCACATCACACCGTGCC 60.603 55.000 0.00 0.00 32.98 5.01
89 90 1.225855 TTCTTCACATCACACCGTGC 58.774 50.000 0.00 0.00 32.98 5.34
90 91 3.813800 CATTTCTTCACATCACACCGTG 58.186 45.455 0.00 0.00 34.45 4.94
91 92 2.226437 GCATTTCTTCACATCACACCGT 59.774 45.455 0.00 0.00 0.00 4.83
92 93 2.725759 CGCATTTCTTCACATCACACCG 60.726 50.000 0.00 0.00 0.00 4.94
93 94 2.414559 CCGCATTTCTTCACATCACACC 60.415 50.000 0.00 0.00 0.00 4.16
94 95 2.226437 ACCGCATTTCTTCACATCACAC 59.774 45.455 0.00 0.00 0.00 3.82
95 96 2.226200 CACCGCATTTCTTCACATCACA 59.774 45.455 0.00 0.00 0.00 3.58
96 97 2.414559 CCACCGCATTTCTTCACATCAC 60.415 50.000 0.00 0.00 0.00 3.06
97 98 1.811965 CCACCGCATTTCTTCACATCA 59.188 47.619 0.00 0.00 0.00 3.07
98 99 2.083774 TCCACCGCATTTCTTCACATC 58.916 47.619 0.00 0.00 0.00 3.06
99 100 2.086869 CTCCACCGCATTTCTTCACAT 58.913 47.619 0.00 0.00 0.00 3.21
100 101 1.071542 TCTCCACCGCATTTCTTCACA 59.928 47.619 0.00 0.00 0.00 3.58
101 102 1.808411 TCTCCACCGCATTTCTTCAC 58.192 50.000 0.00 0.00 0.00 3.18
102 103 2.224523 ACTTCTCCACCGCATTTCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
103 104 2.427506 ACTTCTCCACCGCATTTCTTC 58.572 47.619 0.00 0.00 0.00 2.87
104 105 2.568623 ACTTCTCCACCGCATTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
105 106 2.832129 TCTACTTCTCCACCGCATTTCT 59.168 45.455 0.00 0.00 0.00 2.52
106 107 3.190874 CTCTACTTCTCCACCGCATTTC 58.809 50.000 0.00 0.00 0.00 2.17
107 108 2.093447 CCTCTACTTCTCCACCGCATTT 60.093 50.000 0.00 0.00 0.00 2.32
108 109 1.482593 CCTCTACTTCTCCACCGCATT 59.517 52.381 0.00 0.00 0.00 3.56
109 110 1.115467 CCTCTACTTCTCCACCGCAT 58.885 55.000 0.00 0.00 0.00 4.73
110 111 1.605058 GCCTCTACTTCTCCACCGCA 61.605 60.000 0.00 0.00 0.00 5.69
111 112 1.142097 GCCTCTACTTCTCCACCGC 59.858 63.158 0.00 0.00 0.00 5.68
112 113 0.457851 CAGCCTCTACTTCTCCACCG 59.542 60.000 0.00 0.00 0.00 4.94
113 114 1.562783 ACAGCCTCTACTTCTCCACC 58.437 55.000 0.00 0.00 0.00 4.61
114 115 2.563179 TCAACAGCCTCTACTTCTCCAC 59.437 50.000 0.00 0.00 0.00 4.02
115 116 2.563179 GTCAACAGCCTCTACTTCTCCA 59.437 50.000 0.00 0.00 0.00 3.86
116 117 2.563179 TGTCAACAGCCTCTACTTCTCC 59.437 50.000 0.00 0.00 0.00 3.71
117 118 3.508012 TCTGTCAACAGCCTCTACTTCTC 59.492 47.826 5.25 0.00 43.46 2.87
118 119 3.501349 TCTGTCAACAGCCTCTACTTCT 58.499 45.455 5.25 0.00 43.46 2.85
119 120 3.944055 TCTGTCAACAGCCTCTACTTC 57.056 47.619 5.25 0.00 43.46 3.01
120 121 3.898123 TCTTCTGTCAACAGCCTCTACTT 59.102 43.478 5.25 0.00 43.46 2.24
121 122 3.501349 TCTTCTGTCAACAGCCTCTACT 58.499 45.455 5.25 0.00 43.46 2.57
122 123 3.508012 TCTCTTCTGTCAACAGCCTCTAC 59.492 47.826 5.25 0.00 43.46 2.59
123 124 3.761218 CTCTCTTCTGTCAACAGCCTCTA 59.239 47.826 5.25 0.00 43.46 2.43
124 125 2.562298 CTCTCTTCTGTCAACAGCCTCT 59.438 50.000 5.25 0.00 43.46 3.69
125 126 2.930455 GCTCTCTTCTGTCAACAGCCTC 60.930 54.545 5.25 0.00 43.46 4.70
126 127 1.001860 GCTCTCTTCTGTCAACAGCCT 59.998 52.381 5.25 0.00 43.46 4.58
127 128 1.001860 AGCTCTCTTCTGTCAACAGCC 59.998 52.381 5.25 0.00 43.46 4.85
128 129 2.067766 CAGCTCTCTTCTGTCAACAGC 58.932 52.381 5.25 0.00 43.46 4.40
129 130 3.577667 CTCAGCTCTCTTCTGTCAACAG 58.422 50.000 3.69 3.69 45.08 3.16
130 131 2.288702 GCTCAGCTCTCTTCTGTCAACA 60.289 50.000 0.00 0.00 33.48 3.33
131 132 2.288702 TGCTCAGCTCTCTTCTGTCAAC 60.289 50.000 0.00 0.00 33.48 3.18
132 133 1.966354 TGCTCAGCTCTCTTCTGTCAA 59.034 47.619 0.00 0.00 33.48 3.18
133 134 1.545136 CTGCTCAGCTCTCTTCTGTCA 59.455 52.381 0.00 0.00 33.48 3.58
134 135 1.545582 ACTGCTCAGCTCTCTTCTGTC 59.454 52.381 0.00 0.00 33.48 3.51
135 136 1.545582 GACTGCTCAGCTCTCTTCTGT 59.454 52.381 0.00 0.00 33.48 3.41
136 137 1.545136 TGACTGCTCAGCTCTCTTCTG 59.455 52.381 0.00 0.00 0.00 3.02
137 138 1.921982 TGACTGCTCAGCTCTCTTCT 58.078 50.000 0.00 0.00 0.00 2.85
138 139 2.029110 ACTTGACTGCTCAGCTCTCTTC 60.029 50.000 0.00 0.00 0.00 2.87
139 140 1.969923 ACTTGACTGCTCAGCTCTCTT 59.030 47.619 0.00 0.00 0.00 2.85
140 141 1.273048 CACTTGACTGCTCAGCTCTCT 59.727 52.381 0.00 0.00 0.00 3.10
141 142 1.672441 CCACTTGACTGCTCAGCTCTC 60.672 57.143 0.00 0.00 0.00 3.20
142 143 0.321021 CCACTTGACTGCTCAGCTCT 59.679 55.000 0.00 0.00 0.00 4.09
143 144 0.034616 ACCACTTGACTGCTCAGCTC 59.965 55.000 0.00 0.00 0.00 4.09
144 145 1.001406 GTACCACTTGACTGCTCAGCT 59.999 52.381 0.00 0.00 0.00 4.24
145 146 1.270305 TGTACCACTTGACTGCTCAGC 60.270 52.381 0.00 0.00 0.00 4.26
146 147 2.820059 TGTACCACTTGACTGCTCAG 57.180 50.000 0.00 0.00 0.00 3.35
147 148 2.632512 TGATGTACCACTTGACTGCTCA 59.367 45.455 0.00 0.00 0.00 4.26
148 149 2.996621 GTGATGTACCACTTGACTGCTC 59.003 50.000 0.00 0.00 34.38 4.26
149 150 3.045601 GTGATGTACCACTTGACTGCT 57.954 47.619 0.00 0.00 34.38 4.24
160 161 4.157120 AGCCCGCGGTGATGTACC 62.157 66.667 26.12 1.67 46.56 3.34
161 162 2.585247 GAGCCCGCGGTGATGTAC 60.585 66.667 26.12 4.01 0.00 2.90
162 163 3.845259 GGAGCCCGCGGTGATGTA 61.845 66.667 26.12 0.00 0.00 2.29
164 165 4.552365 ATGGAGCCCGCGGTGATG 62.552 66.667 26.12 9.88 0.00 3.07
165 166 4.241555 GATGGAGCCCGCGGTGAT 62.242 66.667 26.12 14.74 0.00 3.06
167 168 4.552365 ATGATGGAGCCCGCGGTG 62.552 66.667 26.12 16.79 0.00 4.94
168 169 4.241555 GATGATGGAGCCCGCGGT 62.242 66.667 26.12 6.07 0.00 5.68
169 170 4.996434 GGATGATGGAGCCCGCGG 62.996 72.222 21.04 21.04 0.00 6.46
170 171 3.541950 ATGGATGATGGAGCCCGCG 62.542 63.158 0.00 0.00 0.00 6.46
171 172 1.970114 CATGGATGATGGAGCCCGC 60.970 63.158 0.00 0.00 0.00 6.13
172 173 4.391869 CATGGATGATGGAGCCCG 57.608 61.111 0.00 0.00 0.00 6.13
186 187 1.442769 GTATATGCCGACCAGCCATG 58.557 55.000 0.00 0.00 0.00 3.66
187 188 0.037326 CGTATATGCCGACCAGCCAT 60.037 55.000 0.00 0.00 0.00 4.40
188 189 1.365999 CGTATATGCCGACCAGCCA 59.634 57.895 0.00 0.00 0.00 4.75
189 190 2.027625 GCGTATATGCCGACCAGCC 61.028 63.158 5.56 0.00 0.00 4.85
190 191 2.372690 CGCGTATATGCCGACCAGC 61.373 63.158 11.33 0.00 0.00 4.85
191 192 2.372690 GCGCGTATATGCCGACCAG 61.373 63.158 8.43 0.00 0.00 4.00
192 193 2.355363 GCGCGTATATGCCGACCA 60.355 61.111 8.43 0.00 0.00 4.02
193 194 3.110178 GGCGCGTATATGCCGACC 61.110 66.667 8.43 6.91 42.22 4.79
198 199 3.777925 CGGCTGGCGCGTATATGC 61.778 66.667 11.55 6.88 36.88 3.14
199 200 3.112075 CCGGCTGGCGCGTATATG 61.112 66.667 18.95 0.00 36.88 1.78
200 201 3.612681 ACCGGCTGGCGCGTATAT 61.613 61.111 18.95 0.00 39.70 0.86
201 202 4.578898 CACCGGCTGGCGCGTATA 62.579 66.667 18.95 0.00 39.70 1.47
212 213 1.648467 GAATGAACCTGAGCACCGGC 61.648 60.000 0.00 0.00 41.61 6.13
213 214 0.321564 TGAATGAACCTGAGCACCGG 60.322 55.000 0.00 0.00 0.00 5.28
214 215 1.667724 GATGAATGAACCTGAGCACCG 59.332 52.381 0.00 0.00 0.00 4.94
215 216 1.667724 CGATGAATGAACCTGAGCACC 59.332 52.381 0.00 0.00 0.00 5.01
216 217 2.606725 CTCGATGAATGAACCTGAGCAC 59.393 50.000 0.00 0.00 0.00 4.40
217 218 2.234661 ACTCGATGAATGAACCTGAGCA 59.765 45.455 0.00 0.00 0.00 4.26
218 219 2.606725 CACTCGATGAATGAACCTGAGC 59.393 50.000 0.00 0.00 0.00 4.26
219 220 2.606725 GCACTCGATGAATGAACCTGAG 59.393 50.000 0.00 0.00 0.00 3.35
220 221 2.621338 GCACTCGATGAATGAACCTGA 58.379 47.619 0.00 0.00 0.00 3.86
221 222 1.325640 CGCACTCGATGAATGAACCTG 59.674 52.381 0.00 0.00 38.10 4.00
222 223 1.645034 CGCACTCGATGAATGAACCT 58.355 50.000 0.00 0.00 38.10 3.50
223 224 0.652592 CCGCACTCGATGAATGAACC 59.347 55.000 0.00 0.00 38.10 3.62
224 225 1.590238 CTCCGCACTCGATGAATGAAC 59.410 52.381 0.00 0.00 38.10 3.18
225 226 1.476488 TCTCCGCACTCGATGAATGAA 59.524 47.619 0.00 0.00 38.10 2.57
226 227 1.066152 CTCTCCGCACTCGATGAATGA 59.934 52.381 0.00 0.00 38.10 2.57
227 228 1.485397 CTCTCCGCACTCGATGAATG 58.515 55.000 0.00 0.00 38.10 2.67
228 229 0.387202 CCTCTCCGCACTCGATGAAT 59.613 55.000 0.00 0.00 38.10 2.57
229 230 1.667154 CCCTCTCCGCACTCGATGAA 61.667 60.000 0.00 0.00 38.10 2.57
230 231 2.121538 CCCTCTCCGCACTCGATGA 61.122 63.158 0.00 0.00 38.10 2.92
231 232 1.459455 ATCCCTCTCCGCACTCGATG 61.459 60.000 0.00 0.00 38.10 3.84
232 233 1.152652 ATCCCTCTCCGCACTCGAT 60.153 57.895 0.00 0.00 38.10 3.59
233 234 2.121538 CATCCCTCTCCGCACTCGA 61.122 63.158 0.00 0.00 38.10 4.04
234 235 1.459455 ATCATCCCTCTCCGCACTCG 61.459 60.000 0.00 0.00 0.00 4.18
235 236 1.621992 TATCATCCCTCTCCGCACTC 58.378 55.000 0.00 0.00 0.00 3.51
236 237 1.967066 CTTATCATCCCTCTCCGCACT 59.033 52.381 0.00 0.00 0.00 4.40
237 238 1.001406 CCTTATCATCCCTCTCCGCAC 59.999 57.143 0.00 0.00 0.00 5.34
238 239 1.133167 TCCTTATCATCCCTCTCCGCA 60.133 52.381 0.00 0.00 0.00 5.69
239 240 1.633774 TCCTTATCATCCCTCTCCGC 58.366 55.000 0.00 0.00 0.00 5.54
240 241 3.435275 TCATCCTTATCATCCCTCTCCG 58.565 50.000 0.00 0.00 0.00 4.63
241 242 3.197549 GCTCATCCTTATCATCCCTCTCC 59.802 52.174 0.00 0.00 0.00 3.71
242 243 3.837146 TGCTCATCCTTATCATCCCTCTC 59.163 47.826 0.00 0.00 0.00 3.20
243 244 3.866816 TGCTCATCCTTATCATCCCTCT 58.133 45.455 0.00 0.00 0.00 3.69
244 245 4.515361 CATGCTCATCCTTATCATCCCTC 58.485 47.826 0.00 0.00 0.00 4.30
245 246 3.308259 GCATGCTCATCCTTATCATCCCT 60.308 47.826 11.37 0.00 0.00 4.20
246 247 3.015327 GCATGCTCATCCTTATCATCCC 58.985 50.000 11.37 0.00 0.00 3.85
247 248 3.015327 GGCATGCTCATCCTTATCATCC 58.985 50.000 18.92 0.00 0.00 3.51
248 249 3.439476 GTGGCATGCTCATCCTTATCATC 59.561 47.826 18.92 0.00 0.00 2.92
249 250 3.418995 GTGGCATGCTCATCCTTATCAT 58.581 45.455 18.92 0.00 0.00 2.45
250 251 2.807837 CGTGGCATGCTCATCCTTATCA 60.808 50.000 18.92 0.00 0.00 2.15
251 252 1.802960 CGTGGCATGCTCATCCTTATC 59.197 52.381 18.92 0.00 0.00 1.75
252 253 1.141657 ACGTGGCATGCTCATCCTTAT 59.858 47.619 18.92 0.00 0.00 1.73
253 254 0.541392 ACGTGGCATGCTCATCCTTA 59.459 50.000 18.92 0.00 0.00 2.69
254 255 1.028330 CACGTGGCATGCTCATCCTT 61.028 55.000 18.92 0.00 0.00 3.36
255 256 1.450848 CACGTGGCATGCTCATCCT 60.451 57.895 18.92 0.00 0.00 3.24
256 257 1.434622 CTCACGTGGCATGCTCATCC 61.435 60.000 18.92 0.10 0.00 3.51
257 258 2.012237 CTCACGTGGCATGCTCATC 58.988 57.895 18.92 0.53 0.00 2.92
258 259 2.110967 GCTCACGTGGCATGCTCAT 61.111 57.895 18.92 0.00 0.00 2.90
259 260 2.743538 GCTCACGTGGCATGCTCA 60.744 61.111 18.92 11.22 0.00 4.26
260 261 2.249557 CTTGCTCACGTGGCATGCTC 62.250 60.000 25.41 8.46 39.54 4.26
261 262 2.281692 TTGCTCACGTGGCATGCT 60.282 55.556 25.41 0.00 39.54 3.79
262 263 2.177531 CTTGCTCACGTGGCATGC 59.822 61.111 25.41 19.44 39.54 4.06
263 264 1.229975 TGACTTGCTCACGTGGCATG 61.230 55.000 27.50 27.50 39.54 4.06
264 265 0.534877 TTGACTTGCTCACGTGGCAT 60.535 50.000 25.41 15.60 39.54 4.40
265 266 1.153269 TTGACTTGCTCACGTGGCA 60.153 52.632 22.47 22.47 37.97 4.92
266 267 1.279840 GTTGACTTGCTCACGTGGC 59.720 57.895 17.00 17.89 0.00 5.01
267 268 1.564622 CGTTGACTTGCTCACGTGG 59.435 57.895 17.00 7.71 0.00 4.94
268 269 1.151777 ACCGTTGACTTGCTCACGTG 61.152 55.000 9.94 9.94 0.00 4.49
269 270 0.461339 AACCGTTGACTTGCTCACGT 60.461 50.000 0.00 0.00 0.00 4.49
270 271 1.455786 CTAACCGTTGACTTGCTCACG 59.544 52.381 0.00 0.00 0.00 4.35
271 272 1.798813 CCTAACCGTTGACTTGCTCAC 59.201 52.381 0.00 0.00 0.00 3.51
272 273 1.689813 TCCTAACCGTTGACTTGCTCA 59.310 47.619 0.00 0.00 0.00 4.26
273 274 2.067013 GTCCTAACCGTTGACTTGCTC 58.933 52.381 0.00 0.00 0.00 4.26
274 275 1.270678 GGTCCTAACCGTTGACTTGCT 60.271 52.381 0.00 0.00 35.36 3.91
275 276 1.154197 GGTCCTAACCGTTGACTTGC 58.846 55.000 0.00 0.00 35.36 4.01
285 286 3.881937 ATACGTTGACTGGTCCTAACC 57.118 47.619 0.00 0.00 46.66 2.85
286 287 4.158394 TGGTATACGTTGACTGGTCCTAAC 59.842 45.833 0.00 0.00 0.00 2.34
287 288 4.158394 GTGGTATACGTTGACTGGTCCTAA 59.842 45.833 0.00 0.00 0.00 2.69
288 289 3.696051 GTGGTATACGTTGACTGGTCCTA 59.304 47.826 0.00 0.00 0.00 2.94
289 290 2.494870 GTGGTATACGTTGACTGGTCCT 59.505 50.000 0.00 0.00 0.00 3.85
290 291 2.231964 TGTGGTATACGTTGACTGGTCC 59.768 50.000 0.00 0.00 0.00 4.46
291 292 3.581024 TGTGGTATACGTTGACTGGTC 57.419 47.619 0.00 0.00 0.00 4.02
292 293 3.512329 TGATGTGGTATACGTTGACTGGT 59.488 43.478 0.00 0.00 0.00 4.00
293 294 4.112634 CTGATGTGGTATACGTTGACTGG 58.887 47.826 0.00 0.00 0.00 4.00
294 295 3.551890 GCTGATGTGGTATACGTTGACTG 59.448 47.826 0.00 0.00 0.00 3.51
295 296 3.733988 CGCTGATGTGGTATACGTTGACT 60.734 47.826 0.00 0.00 0.00 3.41
296 297 2.534349 CGCTGATGTGGTATACGTTGAC 59.466 50.000 0.00 0.00 0.00 3.18
297 298 2.424246 TCGCTGATGTGGTATACGTTGA 59.576 45.455 0.00 0.00 0.00 3.18
298 299 2.804647 TCGCTGATGTGGTATACGTTG 58.195 47.619 0.00 0.00 0.00 4.10
299 300 3.513680 TTCGCTGATGTGGTATACGTT 57.486 42.857 0.00 0.00 0.00 3.99
300 301 3.513680 TTTCGCTGATGTGGTATACGT 57.486 42.857 0.00 0.00 0.00 3.57
301 302 4.088071 CGTATTTCGCTGATGTGGTATACG 59.912 45.833 0.00 0.00 37.43 3.06
302 303 4.980434 ACGTATTTCGCTGATGTGGTATAC 59.020 41.667 0.00 0.00 44.19 1.47
303 304 5.190992 ACGTATTTCGCTGATGTGGTATA 57.809 39.130 0.00 0.00 44.19 1.47
304 305 4.049186 GACGTATTTCGCTGATGTGGTAT 58.951 43.478 0.00 0.00 44.19 2.73
305 306 3.441163 GACGTATTTCGCTGATGTGGTA 58.559 45.455 0.00 0.00 44.19 3.25
306 307 2.268298 GACGTATTTCGCTGATGTGGT 58.732 47.619 0.00 0.00 44.19 4.16
307 308 1.255342 CGACGTATTTCGCTGATGTGG 59.745 52.381 0.00 0.00 44.19 4.17
308 309 1.255342 CCGACGTATTTCGCTGATGTG 59.745 52.381 0.00 0.00 44.19 3.21
309 310 1.133598 TCCGACGTATTTCGCTGATGT 59.866 47.619 0.00 0.00 44.19 3.06
310 311 1.835121 TCCGACGTATTTCGCTGATG 58.165 50.000 0.00 0.00 44.19 3.07
311 312 2.795175 ATCCGACGTATTTCGCTGAT 57.205 45.000 0.00 0.00 44.19 2.90
312 313 2.355444 TGTATCCGACGTATTTCGCTGA 59.645 45.455 0.00 0.00 44.19 4.26
313 314 2.719556 CTGTATCCGACGTATTTCGCTG 59.280 50.000 0.00 0.00 44.19 5.18
314 315 2.357009 ACTGTATCCGACGTATTTCGCT 59.643 45.455 0.00 0.00 44.19 4.93
315 316 2.724349 ACTGTATCCGACGTATTTCGC 58.276 47.619 0.00 0.00 44.19 4.70
316 317 5.050499 ACTCTACTGTATCCGACGTATTTCG 60.050 44.000 0.00 0.00 46.00 3.46
317 318 6.134730 CACTCTACTGTATCCGACGTATTTC 58.865 44.000 0.00 0.00 0.00 2.17
318 319 5.505324 GCACTCTACTGTATCCGACGTATTT 60.505 44.000 0.00 0.00 0.00 1.40
319 320 4.024218 GCACTCTACTGTATCCGACGTATT 60.024 45.833 0.00 0.00 0.00 1.89
320 321 3.497640 GCACTCTACTGTATCCGACGTAT 59.502 47.826 0.00 0.00 0.00 3.06
321 322 2.868583 GCACTCTACTGTATCCGACGTA 59.131 50.000 0.00 0.00 0.00 3.57
322 323 1.669779 GCACTCTACTGTATCCGACGT 59.330 52.381 0.00 0.00 0.00 4.34
323 324 1.002684 GGCACTCTACTGTATCCGACG 60.003 57.143 0.00 0.00 0.00 5.12
324 325 2.022195 TGGCACTCTACTGTATCCGAC 58.978 52.381 0.00 0.00 0.00 4.79
325 326 2.022195 GTGGCACTCTACTGTATCCGA 58.978 52.381 11.13 0.00 0.00 4.55
326 327 1.749063 TGTGGCACTCTACTGTATCCG 59.251 52.381 19.83 0.00 0.00 4.18
327 328 4.408182 AATGTGGCACTCTACTGTATCC 57.592 45.455 19.83 0.00 0.00 2.59
328 329 5.459107 CGTAAATGTGGCACTCTACTGTATC 59.541 44.000 19.83 0.00 0.00 2.24
329 330 5.348986 CGTAAATGTGGCACTCTACTGTAT 58.651 41.667 19.83 0.00 0.00 2.29
330 331 4.740268 CGTAAATGTGGCACTCTACTGTA 58.260 43.478 19.83 0.00 0.00 2.74
331 332 3.585862 CGTAAATGTGGCACTCTACTGT 58.414 45.455 19.83 0.00 0.00 3.55
332 333 2.348666 GCGTAAATGTGGCACTCTACTG 59.651 50.000 19.83 12.95 0.00 2.74
333 334 2.028476 TGCGTAAATGTGGCACTCTACT 60.028 45.455 19.83 1.60 0.00 2.57
334 335 2.343101 TGCGTAAATGTGGCACTCTAC 58.657 47.619 19.83 14.90 0.00 2.59
335 336 2.753055 TGCGTAAATGTGGCACTCTA 57.247 45.000 19.83 4.58 0.00 2.43
336 337 1.890876 TTGCGTAAATGTGGCACTCT 58.109 45.000 19.83 3.15 36.23 3.24
337 338 2.420022 AGATTGCGTAAATGTGGCACTC 59.580 45.455 19.83 3.64 36.83 3.51
338 339 2.420022 GAGATTGCGTAAATGTGGCACT 59.580 45.455 19.83 0.54 36.23 4.40
339 340 2.161410 TGAGATTGCGTAAATGTGGCAC 59.839 45.455 11.55 11.55 36.23 5.01
340 341 2.419673 CTGAGATTGCGTAAATGTGGCA 59.580 45.455 0.00 0.00 34.35 4.92
341 342 2.420022 ACTGAGATTGCGTAAATGTGGC 59.580 45.455 0.00 0.00 0.00 5.01
342 343 3.684305 TCACTGAGATTGCGTAAATGTGG 59.316 43.478 0.00 0.00 0.00 4.17
343 344 4.436050 GGTCACTGAGATTGCGTAAATGTG 60.436 45.833 0.00 0.00 0.00 3.21
344 345 3.684788 GGTCACTGAGATTGCGTAAATGT 59.315 43.478 0.00 0.00 0.00 2.71
345 346 3.242091 CGGTCACTGAGATTGCGTAAATG 60.242 47.826 0.00 0.00 0.00 2.32
346 347 2.930040 CGGTCACTGAGATTGCGTAAAT 59.070 45.455 0.00 0.00 0.00 1.40
347 348 2.288579 ACGGTCACTGAGATTGCGTAAA 60.289 45.455 0.00 0.00 0.00 2.01
348 349 1.271379 ACGGTCACTGAGATTGCGTAA 59.729 47.619 0.00 0.00 0.00 3.18
349 350 0.885879 ACGGTCACTGAGATTGCGTA 59.114 50.000 0.00 0.00 0.00 4.42
350 351 0.885879 TACGGTCACTGAGATTGCGT 59.114 50.000 0.00 0.00 0.00 5.24
351 352 2.209838 ATACGGTCACTGAGATTGCG 57.790 50.000 0.00 0.00 0.00 4.85
352 353 3.553511 CAGAATACGGTCACTGAGATTGC 59.446 47.826 0.00 0.00 32.90 3.56
353 354 4.800993 GTCAGAATACGGTCACTGAGATTG 59.199 45.833 10.50 0.00 39.52 2.67
354 355 4.462834 TGTCAGAATACGGTCACTGAGATT 59.537 41.667 10.50 0.00 39.52 2.40
355 356 4.017126 TGTCAGAATACGGTCACTGAGAT 58.983 43.478 10.50 0.00 39.52 2.75
356 357 3.190744 GTGTCAGAATACGGTCACTGAGA 59.809 47.826 10.50 7.93 39.52 3.27
357 358 3.191581 AGTGTCAGAATACGGTCACTGAG 59.808 47.826 10.50 0.00 38.48 3.35
358 359 3.154710 AGTGTCAGAATACGGTCACTGA 58.845 45.455 0.00 0.00 38.48 3.41
359 360 3.577649 AGTGTCAGAATACGGTCACTG 57.422 47.619 0.00 0.00 38.48 3.66
360 361 3.366070 CGAAGTGTCAGAATACGGTCACT 60.366 47.826 0.00 0.00 40.44 3.41
361 362 2.915463 CGAAGTGTCAGAATACGGTCAC 59.085 50.000 0.00 0.00 32.91 3.67
362 363 2.555325 ACGAAGTGTCAGAATACGGTCA 59.445 45.455 0.00 0.00 42.51 4.02
363 364 3.213249 ACGAAGTGTCAGAATACGGTC 57.787 47.619 0.00 0.00 42.51 4.79
377 378 6.202188 CACTTTGGTAACTGTATTCACGAAGT 59.798 38.462 0.00 0.00 39.13 3.01
378 379 6.422701 TCACTTTGGTAACTGTATTCACGAAG 59.577 38.462 0.00 0.00 37.61 3.79
379 380 6.282167 TCACTTTGGTAACTGTATTCACGAA 58.718 36.000 0.00 0.00 37.61 3.85
380 381 5.845103 TCACTTTGGTAACTGTATTCACGA 58.155 37.500 0.00 0.00 37.61 4.35
381 382 6.360329 GTTCACTTTGGTAACTGTATTCACG 58.640 40.000 0.00 0.00 37.61 4.35
382 383 6.293790 GGGTTCACTTTGGTAACTGTATTCAC 60.294 42.308 0.00 0.00 37.61 3.18
383 384 5.766174 GGGTTCACTTTGGTAACTGTATTCA 59.234 40.000 0.00 0.00 37.61 2.57
384 385 6.002082 AGGGTTCACTTTGGTAACTGTATTC 58.998 40.000 0.00 0.00 37.61 1.75
385 386 5.948842 AGGGTTCACTTTGGTAACTGTATT 58.051 37.500 0.00 0.00 37.61 1.89
386 387 5.578157 AGGGTTCACTTTGGTAACTGTAT 57.422 39.130 0.00 0.00 37.61 2.29
387 388 6.327104 TCTTAGGGTTCACTTTGGTAACTGTA 59.673 38.462 0.00 0.00 37.61 2.74
388 389 3.945640 AGGGTTCACTTTGGTAACTGT 57.054 42.857 0.00 0.00 37.61 3.55
389 390 5.469084 GTCTTAGGGTTCACTTTGGTAACTG 59.531 44.000 0.00 0.00 37.61 3.16
390 391 5.455755 GGTCTTAGGGTTCACTTTGGTAACT 60.456 44.000 0.00 0.00 37.61 2.24
391 392 4.758674 GGTCTTAGGGTTCACTTTGGTAAC 59.241 45.833 0.00 0.00 0.00 2.50
392 393 4.412858 TGGTCTTAGGGTTCACTTTGGTAA 59.587 41.667 0.00 0.00 0.00 2.85
393 394 3.975312 TGGTCTTAGGGTTCACTTTGGTA 59.025 43.478 0.00 0.00 0.00 3.25
394 395 2.781174 TGGTCTTAGGGTTCACTTTGGT 59.219 45.455 0.00 0.00 0.00 3.67
395 396 3.502123 TGGTCTTAGGGTTCACTTTGG 57.498 47.619 0.00 0.00 0.00 3.28
396 397 4.461198 ACTTGGTCTTAGGGTTCACTTTG 58.539 43.478 0.00 0.00 0.00 2.77
397 398 4.790718 ACTTGGTCTTAGGGTTCACTTT 57.209 40.909 0.00 0.00 0.00 2.66
398 399 4.165372 TGAACTTGGTCTTAGGGTTCACTT 59.835 41.667 0.00 0.00 40.47 3.16
399 400 3.714798 TGAACTTGGTCTTAGGGTTCACT 59.285 43.478 0.00 0.00 40.47 3.41
400 401 4.065789 CTGAACTTGGTCTTAGGGTTCAC 58.934 47.826 0.00 0.00 40.47 3.18
401 402 3.072476 CCTGAACTTGGTCTTAGGGTTCA 59.928 47.826 0.00 0.00 42.23 3.18
402 403 3.072622 ACCTGAACTTGGTCTTAGGGTTC 59.927 47.826 0.00 0.00 37.41 3.62
403 404 3.053826 ACCTGAACTTGGTCTTAGGGTT 58.946 45.455 0.00 0.00 31.03 4.11
404 405 2.702748 ACCTGAACTTGGTCTTAGGGT 58.297 47.619 0.00 0.00 31.03 4.34
405 406 3.838903 AGTACCTGAACTTGGTCTTAGGG 59.161 47.826 0.00 0.00 38.88 3.53
406 407 6.793505 ATAGTACCTGAACTTGGTCTTAGG 57.206 41.667 0.00 0.00 38.88 2.69
407 408 7.837863 TCAATAGTACCTGAACTTGGTCTTAG 58.162 38.462 0.00 0.00 38.88 2.18
408 409 7.786046 TCAATAGTACCTGAACTTGGTCTTA 57.214 36.000 0.00 0.00 38.88 2.10
409 410 6.681729 TCAATAGTACCTGAACTTGGTCTT 57.318 37.500 0.00 0.00 38.88 3.01
410 411 6.213600 ACATCAATAGTACCTGAACTTGGTCT 59.786 38.462 0.00 0.00 38.88 3.85
411 412 6.407202 ACATCAATAGTACCTGAACTTGGTC 58.593 40.000 0.00 0.00 38.88 4.02
412 413 6.374417 ACATCAATAGTACCTGAACTTGGT 57.626 37.500 0.00 0.00 41.28 3.67
413 414 8.964476 ATTACATCAATAGTACCTGAACTTGG 57.036 34.615 0.00 0.00 0.00 3.61
429 430 9.740239 GGTATCGTGTAGAGTAAATTACATCAA 57.260 33.333 5.89 0.00 32.87 2.57
430 431 9.128404 AGGTATCGTGTAGAGTAAATTACATCA 57.872 33.333 5.89 0.00 32.87 3.07
431 432 9.962783 AAGGTATCGTGTAGAGTAAATTACATC 57.037 33.333 5.89 0.99 32.87 3.06
434 435 9.392021 GCTAAGGTATCGTGTAGAGTAAATTAC 57.608 37.037 0.00 0.00 0.00 1.89
435 436 9.347240 AGCTAAGGTATCGTGTAGAGTAAATTA 57.653 33.333 0.00 0.00 0.00 1.40
436 437 8.235359 AGCTAAGGTATCGTGTAGAGTAAATT 57.765 34.615 0.00 0.00 0.00 1.82
437 438 7.820578 AGCTAAGGTATCGTGTAGAGTAAAT 57.179 36.000 0.00 0.00 0.00 1.40
438 439 7.636150 AAGCTAAGGTATCGTGTAGAGTAAA 57.364 36.000 0.00 0.00 0.00 2.01
439 440 7.555554 AGAAAGCTAAGGTATCGTGTAGAGTAA 59.444 37.037 0.00 0.00 0.00 2.24
440 441 7.012138 CAGAAAGCTAAGGTATCGTGTAGAGTA 59.988 40.741 0.00 0.00 0.00 2.59
441 442 5.887035 AGAAAGCTAAGGTATCGTGTAGAGT 59.113 40.000 0.00 0.00 0.00 3.24
442 443 6.183360 ACAGAAAGCTAAGGTATCGTGTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
443 444 5.651139 ACAGAAAGCTAAGGTATCGTGTAGA 59.349 40.000 0.00 0.00 0.00 2.59
444 445 5.892568 ACAGAAAGCTAAGGTATCGTGTAG 58.107 41.667 0.00 0.00 0.00 2.74
445 446 5.651139 AGACAGAAAGCTAAGGTATCGTGTA 59.349 40.000 0.00 0.00 0.00 2.90
446 447 4.463186 AGACAGAAAGCTAAGGTATCGTGT 59.537 41.667 0.00 0.00 0.00 4.49
447 448 5.000012 AGACAGAAAGCTAAGGTATCGTG 58.000 43.478 0.00 0.00 0.00 4.35
448 449 4.951094 AGAGACAGAAAGCTAAGGTATCGT 59.049 41.667 0.00 0.00 0.00 3.73
449 450 5.508200 AGAGACAGAAAGCTAAGGTATCG 57.492 43.478 0.00 0.00 0.00 2.92
450 451 6.321690 TGGTAGAGACAGAAAGCTAAGGTATC 59.678 42.308 0.00 0.00 0.00 2.24
451 452 6.097129 GTGGTAGAGACAGAAAGCTAAGGTAT 59.903 42.308 0.00 0.00 0.00 2.73
549 577 6.274579 TGGGTAAAAGATTCCAAACGAAAAC 58.725 36.000 0.00 0.00 33.08 2.43
747 786 5.567037 TTGTGAGAGAAAGAAAGATGGGA 57.433 39.130 0.00 0.00 0.00 4.37
842 881 0.179097 GCACAGGATCTTCCTCGACC 60.179 60.000 0.00 0.00 45.66 4.79
981 1186 2.899339 GCTGGAGCTGCGATTCCC 60.899 66.667 0.00 0.00 38.21 3.97
1049 1263 2.895865 CAGGAGCATGCAGGAGCG 60.896 66.667 21.98 0.00 46.23 5.03
1466 1680 2.686915 CTGTCATCAAAGGAAGGATGCC 59.313 50.000 0.00 0.00 40.50 4.40
1831 2051 6.656270 TCTGCACTGAACTCAACATCATAAAT 59.344 34.615 0.00 0.00 0.00 1.40
2075 2295 3.056322 CAGAGGAAAAGATTTGGGCTTGG 60.056 47.826 0.00 0.00 0.00 3.61
2076 2296 3.615834 GCAGAGGAAAAGATTTGGGCTTG 60.616 47.826 0.00 0.00 0.00 4.01
2077 2297 2.564504 GCAGAGGAAAAGATTTGGGCTT 59.435 45.455 0.00 0.00 0.00 4.35
2078 2298 2.174360 GCAGAGGAAAAGATTTGGGCT 58.826 47.619 0.00 0.00 0.00 5.19
2079 2299 1.895131 TGCAGAGGAAAAGATTTGGGC 59.105 47.619 0.00 0.00 0.00 5.36
2080 2300 4.813750 AATGCAGAGGAAAAGATTTGGG 57.186 40.909 0.00 0.00 0.00 4.12
2219 2448 1.898574 GCCCCGGCACTAATGATGG 60.899 63.158 0.00 0.00 41.49 3.51
2320 2552 4.338964 TGTGATATTGTTGCCATTAGCCAG 59.661 41.667 0.00 0.00 42.71 4.85
2326 2558 6.830324 ACATACTCTGTGATATTGTTGCCATT 59.170 34.615 0.00 0.00 36.48 3.16
2358 2590 1.006922 GGCACTGGCTTTGCTTGTC 60.007 57.895 10.13 0.00 40.07 3.18
2691 2923 2.285368 TCCAAGATCGGGCCACCT 60.285 61.111 4.39 0.00 33.28 4.00
2835 3067 1.271597 GCCAAGTCCTGATCACCAAGT 60.272 52.381 0.00 0.00 0.00 3.16
2978 3210 0.964860 TGATGGGCCCATGTTTGTCG 60.965 55.000 42.21 0.00 36.70 4.35
2986 3218 2.500269 ATGGAATTTGATGGGCCCAT 57.500 45.000 38.12 38.12 39.69 4.00
3232 3482 3.443099 TCTCTAGAACATCGCACATGG 57.557 47.619 0.00 0.00 0.00 3.66
3702 3965 6.978659 ACTCACTGTATGTTATACGATGTTGG 59.021 38.462 0.00 0.00 0.00 3.77
4030 4293 2.481441 TGCCACTCCATATTCCTCAGT 58.519 47.619 0.00 0.00 0.00 3.41
4031 4294 3.409570 CATGCCACTCCATATTCCTCAG 58.590 50.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.