Multiple sequence alignment - TraesCS1D01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G237600 chr1D 100.000 4871 0 0 1 4871 326963663 326968533 0.000000e+00 8996.0
1 TraesCS1D01G237600 chr1D 96.482 398 6 6 3907 4303 20542873 20542483 0.000000e+00 651.0
2 TraesCS1D01G237600 chr1D 96.241 399 5 7 3907 4302 21845262 21844871 0.000000e+00 645.0
3 TraesCS1D01G237600 chr1B 88.592 3366 261 48 592 3907 441627938 441631230 0.000000e+00 3975.0
4 TraesCS1D01G237600 chr1B 91.068 571 35 2 4299 4869 441631218 441631772 0.000000e+00 758.0
5 TraesCS1D01G237600 chr1A 92.668 1623 91 14 2303 3907 409837476 409835864 0.000000e+00 2313.0
6 TraesCS1D01G237600 chr1A 88.072 1878 135 35 454 2270 409839320 409837471 0.000000e+00 2145.0
7 TraesCS1D01G237600 chr1A 91.053 570 31 11 4302 4871 409835873 409835324 0.000000e+00 752.0
8 TraesCS1D01G237600 chr1A 90.385 52 5 0 411 462 354829971 354829920 8.750000e-08 69.4
9 TraesCS1D01G237600 chr1A 97.368 38 1 0 410 447 11161495 11161458 1.130000e-06 65.8
10 TraesCS1D01G237600 chr7D 97.475 396 5 4 3910 4302 441862620 441862227 0.000000e+00 671.0
11 TraesCS1D01G237600 chr7D 96.482 398 10 3 3907 4302 151776217 151776612 0.000000e+00 654.0
12 TraesCS1D01G237600 chr3A 96.259 401 12 3 3905 4302 1518526 1518126 0.000000e+00 654.0
13 TraesCS1D01G237600 chr3A 79.817 109 22 0 342 450 431075025 431075133 4.040000e-11 80.5
14 TraesCS1D01G237600 chr2D 96.482 398 10 3 3906 4302 308104090 308103696 0.000000e+00 654.0
15 TraesCS1D01G237600 chr2D 95.980 398 12 3 3906 4302 308108370 308107976 1.140000e-180 643.0
16 TraesCS1D01G237600 chr2D 78.571 112 20 3 351 462 406201253 406201146 2.430000e-08 71.3
17 TraesCS1D01G237600 chr6D 96.241 399 11 3 3907 4302 61133286 61133683 0.000000e+00 651.0
18 TraesCS1D01G237600 chr6D 96.231 398 6 9 3906 4303 461716762 461717150 1.140000e-180 643.0
19 TraesCS1D01G237600 chr4A 84.524 84 10 1 682 762 728234493 728234576 4.040000e-11 80.5
20 TraesCS1D01G237600 chr4D 82.222 90 10 4 371 457 477160823 477160909 6.760000e-09 73.1
21 TraesCS1D01G237600 chr3B 81.250 96 11 5 352 443 816227488 816227580 2.430000e-08 71.3
22 TraesCS1D01G237600 chr5B 100.000 30 0 0 1312 1341 687259130 687259159 6.810000e-04 56.5
23 TraesCS1D01G237600 chr5B 100.000 30 0 0 1312 1341 687325108 687325137 6.810000e-04 56.5
24 TraesCS1D01G237600 chr5B 100.000 30 0 0 1312 1341 687340120 687340149 6.810000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G237600 chr1D 326963663 326968533 4870 False 8996.000000 8996 100.000000 1 4871 1 chr1D.!!$F1 4870
1 TraesCS1D01G237600 chr1B 441627938 441631772 3834 False 2366.500000 3975 89.830000 592 4869 2 chr1B.!!$F1 4277
2 TraesCS1D01G237600 chr1A 409835324 409839320 3996 True 1736.666667 2313 90.597667 454 4871 3 chr1A.!!$R3 4417
3 TraesCS1D01G237600 chr2D 308103696 308108370 4674 True 648.500000 654 96.231000 3906 4302 2 chr2D.!!$R2 396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 526 0.034198 TTGGTCTTCATTCGTCCGCA 59.966 50.0 0.00 0.00 0.00 5.69 F
1539 1591 0.038166 ACAATCCGGCCAAGTCACAT 59.962 50.0 2.24 0.00 0.00 3.21 F
1551 1603 0.449786 AGTCACATGAGACGCTCTCG 59.550 55.0 16.19 2.77 46.25 4.04 F
1797 1862 0.472471 ACTTCCCTTCGCCACTTCAA 59.528 50.0 0.00 0.00 0.00 2.69 F
2679 2754 0.597568 TGAAAATTCTGGCACTGGCG 59.402 50.0 0.00 0.00 42.47 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2156 0.397941 CCTCTGAAGCAACACCCTCA 59.602 55.000 0.00 0.0 0.00 3.86 R
3454 3550 0.861837 GTTGAACTCTCACAGTGGCG 59.138 55.000 0.00 0.0 34.56 5.69 R
3481 3577 2.338500 CTTTCGGCAGTAACTCCACTC 58.662 52.381 0.00 0.0 0.00 3.51 R
3685 3781 3.543070 GCTTGTTTCTCGATCATCTTCGC 60.543 47.826 0.00 0.0 38.97 4.70 R
4426 8803 1.002888 TCGGACTGTCGGAGTAAGAGT 59.997 52.381 13.27 0.0 33.83 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.324163 GACATGTTTAGTCCAACTTCAATAGT 57.676 34.615 0.00 0.00 39.32 2.12
54 55 9.431887 GACATGTTTAGTCCAACTTCAATAGTA 57.568 33.333 0.00 0.00 35.54 1.82
55 56 9.787435 ACATGTTTAGTCCAACTTCAATAGTAA 57.213 29.630 0.00 0.00 35.54 2.24
65 66 9.952030 TCCAACTTCAATAGTAATATGAACACA 57.048 29.630 0.00 0.00 35.54 3.72
77 78 9.665719 AGTAATATGAACACATGTATTGACACA 57.334 29.630 0.00 0.00 38.76 3.72
78 79 9.702726 GTAATATGAACACATGTATTGACACAC 57.297 33.333 0.00 0.00 38.76 3.82
79 80 7.920160 ATATGAACACATGTATTGACACACA 57.080 32.000 0.00 0.00 38.76 3.72
80 81 5.671742 TGAACACATGTATTGACACACAG 57.328 39.130 0.00 0.00 38.76 3.66
81 82 4.514816 TGAACACATGTATTGACACACAGG 59.485 41.667 0.00 0.72 38.76 4.00
82 83 3.411446 ACACATGTATTGACACACAGGG 58.589 45.455 0.00 0.00 38.76 4.45
83 84 2.749076 CACATGTATTGACACACAGGGG 59.251 50.000 0.00 0.00 38.76 4.79
84 85 1.745087 CATGTATTGACACACAGGGGC 59.255 52.381 0.00 0.00 38.76 5.80
85 86 0.321210 TGTATTGACACACAGGGGCG 60.321 55.000 0.00 0.00 0.00 6.13
86 87 0.036765 GTATTGACACACAGGGGCGA 60.037 55.000 0.00 0.00 0.00 5.54
87 88 0.687920 TATTGACACACAGGGGCGAA 59.312 50.000 0.00 0.00 0.00 4.70
88 89 0.606401 ATTGACACACAGGGGCGAAG 60.606 55.000 0.00 0.00 0.00 3.79
89 90 1.691195 TTGACACACAGGGGCGAAGA 61.691 55.000 0.00 0.00 0.00 2.87
90 91 1.668151 GACACACAGGGGCGAAGAC 60.668 63.158 0.00 0.00 0.00 3.01
91 92 2.377628 GACACACAGGGGCGAAGACA 62.378 60.000 0.00 0.00 37.00 3.41
92 93 1.669115 CACACAGGGGCGAAGACAG 60.669 63.158 0.00 0.00 37.00 3.51
93 94 2.046892 CACAGGGGCGAAGACAGG 60.047 66.667 0.00 0.00 37.00 4.00
94 95 2.203788 ACAGGGGCGAAGACAGGA 60.204 61.111 0.00 0.00 37.00 3.86
95 96 2.266055 CAGGGGCGAAGACAGGAC 59.734 66.667 0.00 0.00 37.00 3.85
96 97 2.203788 AGGGGCGAAGACAGGACA 60.204 61.111 0.00 0.00 37.00 4.02
97 98 1.841556 AGGGGCGAAGACAGGACAA 60.842 57.895 0.00 0.00 37.00 3.18
98 99 1.376037 GGGGCGAAGACAGGACAAG 60.376 63.158 0.00 0.00 37.00 3.16
99 100 1.376037 GGGCGAAGACAGGACAAGG 60.376 63.158 0.00 0.00 37.00 3.61
100 101 1.376037 GGCGAAGACAGGACAAGGG 60.376 63.158 0.00 0.00 31.66 3.95
101 102 2.035442 GCGAAGACAGGACAAGGGC 61.035 63.158 0.00 0.00 0.00 5.19
102 103 1.371183 CGAAGACAGGACAAGGGCA 59.629 57.895 0.00 0.00 0.00 5.36
103 104 0.036010 CGAAGACAGGACAAGGGCAT 60.036 55.000 0.00 0.00 0.00 4.40
104 105 1.457346 GAAGACAGGACAAGGGCATG 58.543 55.000 0.00 0.00 0.00 4.06
105 106 0.610232 AAGACAGGACAAGGGCATGC 60.610 55.000 9.90 9.90 0.00 4.06
106 107 2.036256 ACAGGACAAGGGCATGCC 59.964 61.111 29.47 29.47 0.00 4.40
118 119 1.655484 GGCATGCCCAAAAATGCTAC 58.345 50.000 27.24 0.00 46.72 3.58
119 120 1.066286 GGCATGCCCAAAAATGCTACA 60.066 47.619 27.24 0.00 46.72 2.74
120 121 2.001872 GCATGCCCAAAAATGCTACAC 58.998 47.619 6.36 0.00 44.64 2.90
121 122 2.354003 GCATGCCCAAAAATGCTACACT 60.354 45.455 6.36 0.00 44.64 3.55
122 123 3.865684 GCATGCCCAAAAATGCTACACTT 60.866 43.478 6.36 0.00 44.64 3.16
123 124 4.620332 GCATGCCCAAAAATGCTACACTTA 60.620 41.667 6.36 0.00 44.64 2.24
124 125 4.513198 TGCCCAAAAATGCTACACTTAC 57.487 40.909 0.00 0.00 0.00 2.34
125 126 3.057876 TGCCCAAAAATGCTACACTTACG 60.058 43.478 0.00 0.00 0.00 3.18
126 127 3.672241 GCCCAAAAATGCTACACTTACGG 60.672 47.826 0.00 0.00 0.00 4.02
127 128 3.754323 CCCAAAAATGCTACACTTACGGA 59.246 43.478 0.00 0.00 0.00 4.69
128 129 4.379082 CCCAAAAATGCTACACTTACGGAC 60.379 45.833 0.00 0.00 0.00 4.79
129 130 4.454504 CCAAAAATGCTACACTTACGGACT 59.545 41.667 0.00 0.00 0.00 3.85
130 131 5.390567 CCAAAAATGCTACACTTACGGACTC 60.391 44.000 0.00 0.00 0.00 3.36
131 132 4.530710 AAATGCTACACTTACGGACTCA 57.469 40.909 0.00 0.00 0.00 3.41
132 133 4.530710 AATGCTACACTTACGGACTCAA 57.469 40.909 0.00 0.00 0.00 3.02
133 134 4.737855 ATGCTACACTTACGGACTCAAT 57.262 40.909 0.00 0.00 0.00 2.57
134 135 4.530710 TGCTACACTTACGGACTCAATT 57.469 40.909 0.00 0.00 0.00 2.32
135 136 4.491676 TGCTACACTTACGGACTCAATTC 58.508 43.478 0.00 0.00 0.00 2.17
136 137 4.219944 TGCTACACTTACGGACTCAATTCT 59.780 41.667 0.00 0.00 0.00 2.40
137 138 5.416639 TGCTACACTTACGGACTCAATTCTA 59.583 40.000 0.00 0.00 0.00 2.10
138 139 5.742926 GCTACACTTACGGACTCAATTCTAC 59.257 44.000 0.00 0.00 0.00 2.59
139 140 5.717078 ACACTTACGGACTCAATTCTACA 57.283 39.130 0.00 0.00 0.00 2.74
140 141 5.467705 ACACTTACGGACTCAATTCTACAC 58.532 41.667 0.00 0.00 0.00 2.90
141 142 5.010314 ACACTTACGGACTCAATTCTACACA 59.990 40.000 0.00 0.00 0.00 3.72
142 143 5.345202 CACTTACGGACTCAATTCTACACAC 59.655 44.000 0.00 0.00 0.00 3.82
143 144 5.243283 ACTTACGGACTCAATTCTACACACT 59.757 40.000 0.00 0.00 0.00 3.55
144 145 4.175787 ACGGACTCAATTCTACACACTC 57.824 45.455 0.00 0.00 0.00 3.51
145 146 3.172050 CGGACTCAATTCTACACACTCG 58.828 50.000 0.00 0.00 0.00 4.18
146 147 3.119955 CGGACTCAATTCTACACACTCGA 60.120 47.826 0.00 0.00 0.00 4.04
147 148 4.167268 GGACTCAATTCTACACACTCGAC 58.833 47.826 0.00 0.00 0.00 4.20
148 149 4.167268 GACTCAATTCTACACACTCGACC 58.833 47.826 0.00 0.00 0.00 4.79
149 150 3.827302 ACTCAATTCTACACACTCGACCT 59.173 43.478 0.00 0.00 0.00 3.85
150 151 5.008331 ACTCAATTCTACACACTCGACCTA 58.992 41.667 0.00 0.00 0.00 3.08
151 152 5.652891 ACTCAATTCTACACACTCGACCTAT 59.347 40.000 0.00 0.00 0.00 2.57
152 153 5.891451 TCAATTCTACACACTCGACCTATG 58.109 41.667 0.00 0.00 0.00 2.23
153 154 5.650703 TCAATTCTACACACTCGACCTATGA 59.349 40.000 0.00 0.00 0.00 2.15
154 155 5.759506 ATTCTACACACTCGACCTATGAG 57.240 43.478 0.00 0.00 39.40 2.90
155 156 2.943690 TCTACACACTCGACCTATGAGC 59.056 50.000 0.00 0.00 36.94 4.26
156 157 1.840737 ACACACTCGACCTATGAGCT 58.159 50.000 0.00 0.00 36.94 4.09
157 158 3.000684 ACACACTCGACCTATGAGCTA 57.999 47.619 0.00 0.00 36.94 3.32
158 159 3.353557 ACACACTCGACCTATGAGCTAA 58.646 45.455 0.00 0.00 36.94 3.09
159 160 3.128938 ACACACTCGACCTATGAGCTAAC 59.871 47.826 0.00 0.00 36.94 2.34
160 161 3.378742 CACACTCGACCTATGAGCTAACT 59.621 47.826 0.00 0.00 36.94 2.24
161 162 3.628487 ACACTCGACCTATGAGCTAACTC 59.372 47.826 0.00 0.00 43.76 3.01
162 163 3.003897 CACTCGACCTATGAGCTAACTCC 59.996 52.174 0.00 0.00 42.74 3.85
163 164 3.215151 CTCGACCTATGAGCTAACTCCA 58.785 50.000 0.00 0.00 42.74 3.86
164 165 3.823873 CTCGACCTATGAGCTAACTCCAT 59.176 47.826 0.00 0.00 42.74 3.41
165 166 3.821600 TCGACCTATGAGCTAACTCCATC 59.178 47.826 0.00 0.00 42.74 3.51
166 167 3.057174 CGACCTATGAGCTAACTCCATCC 60.057 52.174 0.00 0.00 42.74 3.51
167 168 4.156477 GACCTATGAGCTAACTCCATCCT 58.844 47.826 0.00 0.00 42.74 3.24
168 169 4.561752 ACCTATGAGCTAACTCCATCCTT 58.438 43.478 0.00 0.00 42.74 3.36
169 170 4.971924 ACCTATGAGCTAACTCCATCCTTT 59.028 41.667 0.00 0.00 42.74 3.11
170 171 5.163258 ACCTATGAGCTAACTCCATCCTTTG 60.163 44.000 0.00 0.00 42.74 2.77
171 172 5.070981 CCTATGAGCTAACTCCATCCTTTGA 59.929 44.000 0.00 0.00 42.74 2.69
172 173 5.643421 ATGAGCTAACTCCATCCTTTGAT 57.357 39.130 0.00 0.00 42.74 2.57
173 174 5.441718 TGAGCTAACTCCATCCTTTGATT 57.558 39.130 0.00 0.00 42.74 2.57
174 175 5.819991 TGAGCTAACTCCATCCTTTGATTT 58.180 37.500 0.00 0.00 42.74 2.17
175 176 5.882557 TGAGCTAACTCCATCCTTTGATTTC 59.117 40.000 0.00 0.00 42.74 2.17
176 177 5.819991 AGCTAACTCCATCCTTTGATTTCA 58.180 37.500 0.00 0.00 0.00 2.69
177 178 5.884792 AGCTAACTCCATCCTTTGATTTCAG 59.115 40.000 0.00 0.00 0.00 3.02
178 179 5.449725 GCTAACTCCATCCTTTGATTTCAGC 60.450 44.000 0.00 0.00 0.00 4.26
179 180 3.012518 ACTCCATCCTTTGATTTCAGCG 58.987 45.455 0.00 0.00 0.00 5.18
180 181 3.012518 CTCCATCCTTTGATTTCAGCGT 58.987 45.455 0.00 0.00 0.00 5.07
181 182 2.749076 TCCATCCTTTGATTTCAGCGTG 59.251 45.455 0.00 0.00 0.00 5.34
182 183 2.749076 CCATCCTTTGATTTCAGCGTGA 59.251 45.455 0.00 0.00 0.00 4.35
183 184 3.426695 CCATCCTTTGATTTCAGCGTGAC 60.427 47.826 0.00 0.00 0.00 3.67
184 185 2.844946 TCCTTTGATTTCAGCGTGACA 58.155 42.857 0.00 0.00 0.00 3.58
185 186 2.548057 TCCTTTGATTTCAGCGTGACAC 59.452 45.455 0.00 0.00 0.00 3.67
186 187 2.549754 CCTTTGATTTCAGCGTGACACT 59.450 45.455 3.68 0.00 0.00 3.55
187 188 3.364366 CCTTTGATTTCAGCGTGACACTC 60.364 47.826 3.68 0.00 0.00 3.51
188 189 1.795768 TGATTTCAGCGTGACACTCC 58.204 50.000 3.68 0.00 0.00 3.85
189 190 1.079503 GATTTCAGCGTGACACTCCC 58.920 55.000 3.68 0.00 0.00 4.30
190 191 0.687354 ATTTCAGCGTGACACTCCCT 59.313 50.000 3.68 0.00 0.00 4.20
191 192 1.334160 TTTCAGCGTGACACTCCCTA 58.666 50.000 3.68 0.00 0.00 3.53
192 193 1.557099 TTCAGCGTGACACTCCCTAT 58.443 50.000 3.68 0.00 0.00 2.57
193 194 0.817654 TCAGCGTGACACTCCCTATG 59.182 55.000 3.68 0.00 0.00 2.23
194 195 0.807667 CAGCGTGACACTCCCTATGC 60.808 60.000 3.68 0.00 0.00 3.14
195 196 1.521681 GCGTGACACTCCCTATGCC 60.522 63.158 3.68 0.00 0.00 4.40
196 197 1.961180 GCGTGACACTCCCTATGCCT 61.961 60.000 3.68 0.00 0.00 4.75
197 198 1.399714 CGTGACACTCCCTATGCCTA 58.600 55.000 3.68 0.00 0.00 3.93
198 199 1.338337 CGTGACACTCCCTATGCCTAG 59.662 57.143 3.68 0.00 0.00 3.02
199 200 2.389715 GTGACACTCCCTATGCCTAGT 58.610 52.381 0.00 0.00 0.00 2.57
200 201 3.563223 GTGACACTCCCTATGCCTAGTA 58.437 50.000 0.00 0.00 0.00 1.82
201 202 3.570550 GTGACACTCCCTATGCCTAGTAG 59.429 52.174 0.00 0.00 0.00 2.57
202 203 3.204606 TGACACTCCCTATGCCTAGTAGT 59.795 47.826 0.00 0.00 0.00 2.73
203 204 3.567397 ACACTCCCTATGCCTAGTAGTG 58.433 50.000 18.79 18.79 40.03 2.74
204 205 3.204606 ACACTCCCTATGCCTAGTAGTGA 59.795 47.826 23.51 5.66 38.31 3.41
205 206 3.570550 CACTCCCTATGCCTAGTAGTGAC 59.429 52.174 16.93 0.00 38.31 3.67
206 207 3.158676 CTCCCTATGCCTAGTAGTGACC 58.841 54.545 0.00 0.00 0.00 4.02
207 208 2.158355 TCCCTATGCCTAGTAGTGACCC 60.158 54.545 0.00 0.00 0.00 4.46
208 209 2.425829 CCCTATGCCTAGTAGTGACCCA 60.426 54.545 0.00 0.00 0.00 4.51
209 210 2.894126 CCTATGCCTAGTAGTGACCCAG 59.106 54.545 0.00 0.00 0.00 4.45
210 211 2.552093 ATGCCTAGTAGTGACCCAGT 57.448 50.000 0.00 0.00 0.00 4.00
211 212 2.320681 TGCCTAGTAGTGACCCAGTT 57.679 50.000 0.00 0.00 0.00 3.16
212 213 2.176889 TGCCTAGTAGTGACCCAGTTC 58.823 52.381 0.00 0.00 0.00 3.01
213 214 1.134560 GCCTAGTAGTGACCCAGTTCG 59.865 57.143 0.00 0.00 0.00 3.95
214 215 2.444421 CCTAGTAGTGACCCAGTTCGT 58.556 52.381 0.00 0.00 0.00 3.85
215 216 2.163815 CCTAGTAGTGACCCAGTTCGTG 59.836 54.545 0.00 0.00 0.00 4.35
216 217 1.991121 AGTAGTGACCCAGTTCGTGA 58.009 50.000 0.00 0.00 0.00 4.35
217 218 1.612463 AGTAGTGACCCAGTTCGTGAC 59.388 52.381 0.00 0.00 0.00 3.67
218 219 1.338973 GTAGTGACCCAGTTCGTGACA 59.661 52.381 0.00 0.00 0.00 3.58
219 220 1.048601 AGTGACCCAGTTCGTGACAT 58.951 50.000 0.00 0.00 0.00 3.06
220 221 1.000955 AGTGACCCAGTTCGTGACATC 59.999 52.381 0.00 0.00 0.00 3.06
221 222 1.044611 TGACCCAGTTCGTGACATCA 58.955 50.000 0.00 0.00 0.00 3.07
222 223 1.414550 TGACCCAGTTCGTGACATCAA 59.585 47.619 0.00 0.00 0.00 2.57
223 224 2.158885 TGACCCAGTTCGTGACATCAAA 60.159 45.455 0.00 0.00 0.00 2.69
224 225 2.875933 GACCCAGTTCGTGACATCAAAA 59.124 45.455 0.00 0.00 0.00 2.44
225 226 3.486383 ACCCAGTTCGTGACATCAAAAT 58.514 40.909 0.00 0.00 0.00 1.82
226 227 3.888930 ACCCAGTTCGTGACATCAAAATT 59.111 39.130 0.00 0.00 0.00 1.82
227 228 4.023193 ACCCAGTTCGTGACATCAAAATTC 60.023 41.667 0.00 0.00 0.00 2.17
228 229 4.216257 CCCAGTTCGTGACATCAAAATTCT 59.784 41.667 0.00 0.00 0.00 2.40
229 230 5.278463 CCCAGTTCGTGACATCAAAATTCTT 60.278 40.000 0.00 0.00 0.00 2.52
230 231 6.208644 CCAGTTCGTGACATCAAAATTCTTT 58.791 36.000 0.00 0.00 0.00 2.52
231 232 6.142798 CCAGTTCGTGACATCAAAATTCTTTG 59.857 38.462 0.00 0.00 42.88 2.77
256 257 9.845740 TGATATGTAACACCTATTGTAATTGCT 57.154 29.630 0.00 0.00 37.51 3.91
258 259 6.656314 TGTAACACCTATTGTAATTGCTCG 57.344 37.500 0.00 0.00 37.51 5.03
259 260 6.399743 TGTAACACCTATTGTAATTGCTCGA 58.600 36.000 0.00 0.00 37.51 4.04
260 261 6.874664 TGTAACACCTATTGTAATTGCTCGAA 59.125 34.615 0.00 0.00 37.51 3.71
261 262 6.422776 AACACCTATTGTAATTGCTCGAAG 57.577 37.500 0.00 0.00 37.51 3.79
262 263 5.730550 ACACCTATTGTAATTGCTCGAAGA 58.269 37.500 0.00 0.00 36.32 2.87
263 264 5.581085 ACACCTATTGTAATTGCTCGAAGAC 59.419 40.000 0.00 0.00 36.32 3.01
264 265 5.580691 CACCTATTGTAATTGCTCGAAGACA 59.419 40.000 0.00 0.00 0.00 3.41
265 266 5.812642 ACCTATTGTAATTGCTCGAAGACAG 59.187 40.000 0.00 0.00 0.00 3.51
266 267 5.812642 CCTATTGTAATTGCTCGAAGACAGT 59.187 40.000 0.00 0.00 0.00 3.55
267 268 5.786401 ATTGTAATTGCTCGAAGACAGTC 57.214 39.130 0.00 0.00 0.00 3.51
268 269 4.521130 TGTAATTGCTCGAAGACAGTCT 57.479 40.909 0.00 0.00 0.00 3.24
269 270 5.638596 TGTAATTGCTCGAAGACAGTCTA 57.361 39.130 2.64 0.00 0.00 2.59
270 271 5.641709 TGTAATTGCTCGAAGACAGTCTAG 58.358 41.667 2.64 1.44 0.00 2.43
271 272 3.791973 ATTGCTCGAAGACAGTCTAGG 57.208 47.619 2.64 0.00 0.00 3.02
272 273 1.464734 TGCTCGAAGACAGTCTAGGG 58.535 55.000 2.64 2.41 0.00 3.53
273 274 0.101579 GCTCGAAGACAGTCTAGGGC 59.898 60.000 13.26 13.26 0.00 5.19
274 275 0.741915 CTCGAAGACAGTCTAGGGCC 59.258 60.000 2.64 0.00 0.00 5.80
275 276 0.331954 TCGAAGACAGTCTAGGGCCT 59.668 55.000 12.58 12.58 0.00 5.19
276 277 0.457851 CGAAGACAGTCTAGGGCCTG 59.542 60.000 18.53 6.47 34.82 4.85
277 278 1.853963 GAAGACAGTCTAGGGCCTGA 58.146 55.000 18.53 9.03 32.93 3.86
278 279 2.393646 GAAGACAGTCTAGGGCCTGAT 58.606 52.381 18.53 0.00 32.93 2.90
279 280 1.786937 AGACAGTCTAGGGCCTGATG 58.213 55.000 18.53 11.66 32.93 3.07
280 281 0.105778 GACAGTCTAGGGCCTGATGC 59.894 60.000 18.53 3.61 40.16 3.91
289 290 4.632974 GCCTGATGCCGGCCTAGG 62.633 72.222 27.29 27.29 41.73 3.02
290 291 3.164269 CCTGATGCCGGCCTAGGT 61.164 66.667 26.77 4.31 0.00 3.08
291 292 2.746375 CCTGATGCCGGCCTAGGTT 61.746 63.158 26.77 0.79 0.00 3.50
292 293 1.524621 CTGATGCCGGCCTAGGTTG 60.525 63.158 26.77 3.60 0.00 3.77
293 294 2.203209 GATGCCGGCCTAGGTTGG 60.203 66.667 26.77 13.52 0.00 3.77
294 295 2.690881 ATGCCGGCCTAGGTTGGA 60.691 61.111 26.77 0.73 0.00 3.53
295 296 2.056906 GATGCCGGCCTAGGTTGGAT 62.057 60.000 26.77 6.94 0.00 3.41
296 297 1.645402 ATGCCGGCCTAGGTTGGATT 61.645 55.000 26.77 7.82 0.00 3.01
297 298 1.526225 GCCGGCCTAGGTTGGATTC 60.526 63.158 18.11 4.26 0.00 2.52
298 299 1.912220 CCGGCCTAGGTTGGATTCA 59.088 57.895 11.31 0.00 0.00 2.57
299 300 0.463833 CCGGCCTAGGTTGGATTCAC 60.464 60.000 11.31 0.00 0.00 3.18
300 301 0.810031 CGGCCTAGGTTGGATTCACG 60.810 60.000 11.31 0.00 0.00 4.35
301 302 0.252197 GGCCTAGGTTGGATTCACGT 59.748 55.000 11.31 0.00 0.00 4.49
302 303 1.369625 GCCTAGGTTGGATTCACGTG 58.630 55.000 9.94 9.94 0.00 4.49
303 304 2.012051 GCCTAGGTTGGATTCACGTGG 61.012 57.143 17.00 0.00 0.00 4.94
304 305 1.369625 CTAGGTTGGATTCACGTGGC 58.630 55.000 17.00 5.58 0.00 5.01
305 306 0.035820 TAGGTTGGATTCACGTGGCC 60.036 55.000 17.00 15.03 0.00 5.36
306 307 1.303317 GGTTGGATTCACGTGGCCT 60.303 57.895 17.00 0.00 0.00 5.19
307 308 0.893727 GGTTGGATTCACGTGGCCTT 60.894 55.000 17.00 0.00 0.00 4.35
308 309 1.612199 GGTTGGATTCACGTGGCCTTA 60.612 52.381 17.00 5.25 0.00 2.69
309 310 1.737793 GTTGGATTCACGTGGCCTTAG 59.262 52.381 17.00 0.00 0.00 2.18
310 311 0.251916 TGGATTCACGTGGCCTTAGG 59.748 55.000 17.00 0.00 0.00 2.69
311 312 0.463833 GGATTCACGTGGCCTTAGGG 60.464 60.000 17.00 0.00 0.00 3.53
312 313 0.252197 GATTCACGTGGCCTTAGGGT 59.748 55.000 17.00 0.00 34.45 4.34
313 314 0.696501 ATTCACGTGGCCTTAGGGTT 59.303 50.000 17.00 0.00 34.45 4.11
314 315 0.035739 TTCACGTGGCCTTAGGGTTC 59.964 55.000 17.00 0.00 34.45 3.62
315 316 1.376812 CACGTGGCCTTAGGGTTCC 60.377 63.158 7.95 0.00 34.45 3.62
316 317 1.538135 ACGTGGCCTTAGGGTTCCT 60.538 57.895 3.32 0.00 37.71 3.36
317 318 1.221021 CGTGGCCTTAGGGTTCCTC 59.779 63.158 3.32 0.00 34.61 3.71
318 319 1.221021 GTGGCCTTAGGGTTCCTCG 59.779 63.158 3.32 0.00 34.61 4.63
319 320 2.189784 GGCCTTAGGGTTCCTCGC 59.810 66.667 0.00 0.00 34.61 5.03
320 321 2.189784 GCCTTAGGGTTCCTCGCC 59.810 66.667 0.00 0.00 34.61 5.54
321 322 2.368011 GCCTTAGGGTTCCTCGCCT 61.368 63.158 0.00 0.00 34.61 5.52
322 323 1.823976 CCTTAGGGTTCCTCGCCTC 59.176 63.158 0.00 0.00 34.61 4.70
323 324 1.437986 CTTAGGGTTCCTCGCCTCG 59.562 63.158 0.00 0.00 34.61 4.63
324 325 2.630592 CTTAGGGTTCCTCGCCTCGC 62.631 65.000 0.00 0.00 34.61 5.03
337 338 3.490759 CTCGCGCCGACAATGCTT 61.491 61.111 0.00 0.00 0.00 3.91
338 339 3.425938 CTCGCGCCGACAATGCTTC 62.426 63.158 0.00 0.00 0.00 3.86
339 340 4.520846 CGCGCCGACAATGCTTCC 62.521 66.667 0.00 0.00 0.00 3.46
340 341 4.179579 GCGCCGACAATGCTTCCC 62.180 66.667 0.00 0.00 0.00 3.97
341 342 2.436646 CGCCGACAATGCTTCCCT 60.437 61.111 0.00 0.00 0.00 4.20
342 343 2.040544 CGCCGACAATGCTTCCCTT 61.041 57.895 0.00 0.00 0.00 3.95
343 344 1.586154 CGCCGACAATGCTTCCCTTT 61.586 55.000 0.00 0.00 0.00 3.11
344 345 0.603065 GCCGACAATGCTTCCCTTTT 59.397 50.000 0.00 0.00 0.00 2.27
345 346 1.816224 GCCGACAATGCTTCCCTTTTA 59.184 47.619 0.00 0.00 0.00 1.52
346 347 2.159379 GCCGACAATGCTTCCCTTTTAG 60.159 50.000 0.00 0.00 0.00 1.85
347 348 2.423538 CCGACAATGCTTCCCTTTTAGG 59.576 50.000 0.00 0.00 34.30 2.69
348 349 3.343617 CGACAATGCTTCCCTTTTAGGA 58.656 45.455 0.00 0.00 37.67 2.94
349 350 3.375299 CGACAATGCTTCCCTTTTAGGAG 59.625 47.826 0.00 0.00 37.67 3.69
350 351 4.336280 GACAATGCTTCCCTTTTAGGAGT 58.664 43.478 0.00 0.00 37.67 3.85
351 352 4.740902 ACAATGCTTCCCTTTTAGGAGTT 58.259 39.130 0.00 0.00 37.67 3.01
352 353 5.147767 ACAATGCTTCCCTTTTAGGAGTTT 58.852 37.500 0.00 0.00 37.67 2.66
353 354 5.602561 ACAATGCTTCCCTTTTAGGAGTTTT 59.397 36.000 0.00 0.00 37.67 2.43
354 355 6.099701 ACAATGCTTCCCTTTTAGGAGTTTTT 59.900 34.615 0.00 0.00 37.67 1.94
380 381 2.376915 TTTTTAGCGTTCGTGTGCTG 57.623 45.000 8.00 0.00 42.46 4.41
381 382 0.041663 TTTTAGCGTTCGTGTGCTGC 60.042 50.000 8.00 0.00 42.46 5.25
382 383 2.153219 TTTAGCGTTCGTGTGCTGCG 62.153 55.000 8.00 0.00 42.46 5.18
385 386 4.707840 CGTTCGTGTGCTGCGCAG 62.708 66.667 32.83 32.83 40.08 5.18
386 387 4.374702 GTTCGTGTGCTGCGCAGG 62.375 66.667 36.47 25.09 40.08 4.85
387 388 4.600576 TTCGTGTGCTGCGCAGGA 62.601 61.111 36.47 32.96 40.08 3.86
388 389 4.600576 TCGTGTGCTGCGCAGGAA 62.601 61.111 36.47 21.96 40.08 3.36
389 390 4.081030 CGTGTGCTGCGCAGGAAG 62.081 66.667 36.47 24.28 40.08 3.46
390 391 3.730761 GTGTGCTGCGCAGGAAGG 61.731 66.667 36.47 14.52 40.08 3.46
394 395 4.496336 GCTGCGCAGGAAGGGGAT 62.496 66.667 36.47 0.00 0.00 3.85
395 396 2.515523 CTGCGCAGGAAGGGGATG 60.516 66.667 29.88 0.00 0.00 3.51
396 397 4.802051 TGCGCAGGAAGGGGATGC 62.802 66.667 5.66 0.00 36.60 3.91
397 398 4.802051 GCGCAGGAAGGGGATGCA 62.802 66.667 0.30 0.00 39.97 3.96
398 399 2.515523 CGCAGGAAGGGGATGCAG 60.516 66.667 0.00 0.00 39.97 4.41
399 400 2.832201 GCAGGAAGGGGATGCAGC 60.832 66.667 0.00 0.00 39.75 5.25
400 401 2.515523 CAGGAAGGGGATGCAGCG 60.516 66.667 0.00 0.00 0.00 5.18
401 402 2.688666 AGGAAGGGGATGCAGCGA 60.689 61.111 0.00 0.00 0.00 4.93
402 403 2.514824 GGAAGGGGATGCAGCGAC 60.515 66.667 0.00 0.00 0.00 5.19
403 404 2.268920 GAAGGGGATGCAGCGACA 59.731 61.111 0.00 0.00 0.00 4.35
404 405 1.377202 GAAGGGGATGCAGCGACAA 60.377 57.895 0.00 0.00 0.00 3.18
405 406 1.648467 GAAGGGGATGCAGCGACAAC 61.648 60.000 0.00 0.00 0.00 3.32
406 407 3.134127 GGGGATGCAGCGACAACC 61.134 66.667 0.00 0.49 0.00 3.77
407 408 3.134127 GGGATGCAGCGACAACCC 61.134 66.667 10.76 10.76 44.39 4.11
408 409 2.045926 GGATGCAGCGACAACCCT 60.046 61.111 0.00 0.00 0.00 4.34
409 410 1.675641 GGATGCAGCGACAACCCTT 60.676 57.895 0.00 0.00 0.00 3.95
410 411 1.244019 GGATGCAGCGACAACCCTTT 61.244 55.000 0.00 0.00 0.00 3.11
411 412 0.109597 GATGCAGCGACAACCCTTTG 60.110 55.000 0.00 0.00 38.83 2.77
412 413 0.537143 ATGCAGCGACAACCCTTTGA 60.537 50.000 0.00 0.00 36.48 2.69
413 414 0.749818 TGCAGCGACAACCCTTTGAA 60.750 50.000 0.00 0.00 36.48 2.69
414 415 0.040067 GCAGCGACAACCCTTTGAAG 60.040 55.000 0.00 0.00 36.48 3.02
415 416 1.593196 CAGCGACAACCCTTTGAAGA 58.407 50.000 0.00 0.00 36.48 2.87
416 417 2.154462 CAGCGACAACCCTTTGAAGAT 58.846 47.619 0.00 0.00 36.48 2.40
417 418 2.095567 CAGCGACAACCCTTTGAAGATG 60.096 50.000 0.00 0.00 36.48 2.90
418 419 1.200020 GCGACAACCCTTTGAAGATGG 59.800 52.381 0.00 0.00 36.48 3.51
419 420 2.778299 CGACAACCCTTTGAAGATGGA 58.222 47.619 0.00 0.00 36.48 3.41
420 421 3.146066 CGACAACCCTTTGAAGATGGAA 58.854 45.455 0.00 0.00 36.48 3.53
421 422 3.758554 CGACAACCCTTTGAAGATGGAAT 59.241 43.478 0.00 0.00 36.48 3.01
422 423 4.941263 CGACAACCCTTTGAAGATGGAATA 59.059 41.667 0.00 0.00 36.48 1.75
423 424 5.414454 CGACAACCCTTTGAAGATGGAATAA 59.586 40.000 0.00 0.00 36.48 1.40
424 425 6.072175 CGACAACCCTTTGAAGATGGAATAAA 60.072 38.462 0.00 0.00 36.48 1.40
425 426 7.523052 CGACAACCCTTTGAAGATGGAATAAAA 60.523 37.037 0.00 0.00 36.48 1.52
426 427 8.206126 ACAACCCTTTGAAGATGGAATAAAAT 57.794 30.769 0.00 0.00 36.48 1.82
427 428 8.659527 ACAACCCTTTGAAGATGGAATAAAATT 58.340 29.630 0.00 0.00 36.48 1.82
428 429 9.154847 CAACCCTTTGAAGATGGAATAAAATTC 57.845 33.333 0.00 0.00 34.24 2.17
429 430 8.670521 ACCCTTTGAAGATGGAATAAAATTCT 57.329 30.769 0.11 0.00 0.00 2.40
430 431 8.753133 ACCCTTTGAAGATGGAATAAAATTCTC 58.247 33.333 0.11 0.00 0.00 2.87
431 432 8.200120 CCCTTTGAAGATGGAATAAAATTCTCC 58.800 37.037 0.11 0.00 0.00 3.71
432 433 8.200120 CCTTTGAAGATGGAATAAAATTCTCCC 58.800 37.037 0.11 0.00 0.00 4.30
433 434 7.660030 TTGAAGATGGAATAAAATTCTCCCC 57.340 36.000 0.11 0.00 0.00 4.81
434 435 5.827797 TGAAGATGGAATAAAATTCTCCCCG 59.172 40.000 0.11 0.00 0.00 5.73
435 436 4.145052 AGATGGAATAAAATTCTCCCCGC 58.855 43.478 0.11 0.00 0.00 6.13
436 437 2.661718 TGGAATAAAATTCTCCCCGCC 58.338 47.619 0.11 0.00 0.00 6.13
437 438 2.243736 TGGAATAAAATTCTCCCCGCCT 59.756 45.455 0.11 0.00 0.00 5.52
438 439 3.460340 TGGAATAAAATTCTCCCCGCCTA 59.540 43.478 0.11 0.00 0.00 3.93
439 440 4.072839 GGAATAAAATTCTCCCCGCCTAG 58.927 47.826 0.11 0.00 0.00 3.02
440 441 2.632987 TAAAATTCTCCCCGCCTAGC 57.367 50.000 0.00 0.00 0.00 3.42
441 442 0.106669 AAAATTCTCCCCGCCTAGCC 60.107 55.000 0.00 0.00 0.00 3.93
442 443 1.996070 AAATTCTCCCCGCCTAGCCC 61.996 60.000 0.00 0.00 0.00 5.19
472 473 1.469767 CGGTGCATCTCACGAGATTCA 60.470 52.381 6.82 6.08 45.31 2.57
474 475 1.592081 GTGCATCTCACGAGATTCAGC 59.408 52.381 9.26 9.50 45.31 4.26
478 479 0.174389 TCTCACGAGATTCAGCTGGC 59.826 55.000 15.13 3.89 31.41 4.85
479 480 0.108472 CTCACGAGATTCAGCTGGCA 60.108 55.000 15.13 0.75 0.00 4.92
480 481 0.108472 TCACGAGATTCAGCTGGCAG 60.108 55.000 15.13 10.94 0.00 4.85
493 494 0.249868 CTGGCAGTTGTCTTCGGTGA 60.250 55.000 6.28 0.00 0.00 4.02
494 495 0.179234 TGGCAGTTGTCTTCGGTGAA 59.821 50.000 0.00 0.00 0.00 3.18
500 501 4.556233 CAGTTGTCTTCGGTGAATCTGTA 58.444 43.478 0.00 0.00 0.00 2.74
514 515 6.038714 GGTGAATCTGTATGGATTTGGTCTTC 59.961 42.308 0.00 0.00 36.24 2.87
522 523 3.343617 TGGATTTGGTCTTCATTCGTCC 58.656 45.455 0.00 0.00 0.00 4.79
525 526 0.034198 TTGGTCTTCATTCGTCCGCA 59.966 50.000 0.00 0.00 0.00 5.69
526 527 0.249120 TGGTCTTCATTCGTCCGCAT 59.751 50.000 0.00 0.00 0.00 4.73
545 546 4.563337 CATTCATGCATCTACAGGTTGG 57.437 45.455 0.00 0.00 0.00 3.77
548 549 4.077300 TCATGCATCTACAGGTTGGATC 57.923 45.455 0.00 0.00 0.00 3.36
549 550 3.713248 TCATGCATCTACAGGTTGGATCT 59.287 43.478 0.00 0.00 0.00 2.75
553 554 5.324409 TGCATCTACAGGTTGGATCTTTTT 58.676 37.500 0.00 0.00 0.00 1.94
576 577 5.465051 TGATATACGCTTCTCTTCATCAGC 58.535 41.667 0.00 0.00 0.00 4.26
583 584 0.452184 TCTCTTCATCAGCGACGGTC 59.548 55.000 0.00 0.00 0.00 4.79
588 589 1.083806 TCATCAGCGACGGTCAATGC 61.084 55.000 9.10 3.71 0.00 3.56
611 612 4.659172 TGCGCTGGTCCTTTGGGG 62.659 66.667 9.73 0.00 0.00 4.96
626 627 1.002624 GGGGACTTGGCATGACGAA 60.003 57.895 7.45 0.00 0.00 3.85
630 631 2.231235 GGGACTTGGCATGACGAATTTT 59.769 45.455 7.45 0.00 0.00 1.82
647 648 8.603242 ACGAATTTTTGACTGTCTACTACAAT 57.397 30.769 9.51 0.00 37.74 2.71
648 649 8.495949 ACGAATTTTTGACTGTCTACTACAATG 58.504 33.333 9.51 0.00 37.74 2.82
680 683 1.974265 TCTAGTGAGAGAGGGCGATG 58.026 55.000 0.00 0.00 0.00 3.84
682 685 0.259065 TAGTGAGAGAGGGCGATGGT 59.741 55.000 0.00 0.00 0.00 3.55
684 687 1.040339 GTGAGAGAGGGCGATGGTCT 61.040 60.000 0.00 0.00 0.00 3.85
685 688 0.324738 TGAGAGAGGGCGATGGTCTT 60.325 55.000 0.00 0.00 0.00 3.01
690 693 2.044946 GGGCGATGGTCTTTGGCT 60.045 61.111 0.00 0.00 0.00 4.75
694 697 1.448540 CGATGGTCTTTGGCTCGCT 60.449 57.895 0.00 0.00 0.00 4.93
695 698 1.424493 CGATGGTCTTTGGCTCGCTC 61.424 60.000 0.00 0.00 0.00 5.03
737 751 5.468072 GCTAGATGGTTGAACATGGATGTAG 59.532 44.000 0.00 0.00 40.80 2.74
784 798 9.694520 CTTTGTAATGTTTGATGAAGTAGATCG 57.305 33.333 0.00 0.00 0.00 3.69
795 816 7.386851 TGATGAAGTAGATCGGAAGTTTTTCT 58.613 34.615 0.00 0.00 33.68 2.52
1159 1209 0.109723 TAGGTCCGCCTTTGCAGTTT 59.890 50.000 0.00 0.00 44.18 2.66
1161 1211 0.318699 GGTCCGCCTTTGCAGTTTTC 60.319 55.000 0.00 0.00 37.32 2.29
1205 1255 7.989741 AGACTGATTAGAAATTACATGGTCCTG 59.010 37.037 0.00 0.00 0.00 3.86
1211 1263 8.519799 TTAGAAATTACATGGTCCTGGATTTC 57.480 34.615 0.00 3.43 35.39 2.17
1227 1279 6.433404 CCTGGATTTCCCATGATTAAGATCAG 59.567 42.308 0.00 0.00 45.57 2.90
1319 1371 3.576648 ACGTCTTGCTAAACTGCTACTC 58.423 45.455 0.00 0.00 0.00 2.59
1320 1372 2.924290 CGTCTTGCTAAACTGCTACTCC 59.076 50.000 0.00 0.00 0.00 3.85
1322 1374 3.055747 GTCTTGCTAAACTGCTACTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
1324 1376 1.831736 TGCTAAACTGCTACTCCCTCC 59.168 52.381 0.00 0.00 0.00 4.30
1326 1378 2.100989 CTAAACTGCTACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
1328 1380 2.226962 AACTGCTACTCCCTCCGTAA 57.773 50.000 0.00 0.00 0.00 3.18
1329 1381 2.226962 ACTGCTACTCCCTCCGTAAA 57.773 50.000 0.00 0.00 0.00 2.01
1330 1382 2.100989 ACTGCTACTCCCTCCGTAAAG 58.899 52.381 0.00 0.00 0.00 1.85
1331 1383 2.291411 ACTGCTACTCCCTCCGTAAAGA 60.291 50.000 0.00 0.00 0.00 2.52
1332 1384 2.758979 CTGCTACTCCCTCCGTAAAGAA 59.241 50.000 0.00 0.00 0.00 2.52
1333 1385 3.167485 TGCTACTCCCTCCGTAAAGAAA 58.833 45.455 0.00 0.00 0.00 2.52
1334 1386 3.773119 TGCTACTCCCTCCGTAAAGAAAT 59.227 43.478 0.00 0.00 0.00 2.17
1335 1387 4.224370 TGCTACTCCCTCCGTAAAGAAATT 59.776 41.667 0.00 0.00 0.00 1.82
1336 1388 5.183969 GCTACTCCCTCCGTAAAGAAATTT 58.816 41.667 0.00 0.00 0.00 1.82
1488 1540 2.095718 GGAAGCACGGAGAATCAAACAC 60.096 50.000 0.00 0.00 36.25 3.32
1498 1550 5.577164 CGGAGAATCAAACACGAAGAAGTAT 59.423 40.000 0.00 0.00 36.25 2.12
1539 1591 0.038166 ACAATCCGGCCAAGTCACAT 59.962 50.000 2.24 0.00 0.00 3.21
1551 1603 0.449786 AGTCACATGAGACGCTCTCG 59.550 55.000 16.19 2.77 46.25 4.04
1560 1612 3.726631 GACGCTCTCGGCTCTGTCG 62.727 68.421 0.00 0.00 41.47 4.35
1670 1725 3.135712 ACTTGTCCAAAATTTGAACCCCC 59.864 43.478 7.37 0.00 0.00 5.40
1671 1726 2.764269 TGTCCAAAATTTGAACCCCCA 58.236 42.857 7.37 0.00 0.00 4.96
1672 1727 3.115390 TGTCCAAAATTTGAACCCCCAA 58.885 40.909 7.37 0.00 0.00 4.12
1771 1834 4.568359 CAGAAGATGGACTAAACGATGTGG 59.432 45.833 0.00 0.00 0.00 4.17
1797 1862 0.472471 ACTTCCCTTCGCCACTTCAA 59.528 50.000 0.00 0.00 0.00 2.69
1800 1865 2.286365 TCCCTTCGCCACTTCAAAAT 57.714 45.000 0.00 0.00 0.00 1.82
1832 1899 5.405935 AGTGTCCTTGTCTTTTTGCTTTT 57.594 34.783 0.00 0.00 0.00 2.27
1848 1915 5.437289 TGCTTTTATTGTGAACTGTGGAG 57.563 39.130 0.00 0.00 0.00 3.86
1855 1922 4.622260 TTGTGAACTGTGGAGATGATGA 57.378 40.909 0.00 0.00 0.00 2.92
1956 2024 3.840991 AGCAGGCATGGATGTCATAAAT 58.159 40.909 0.00 0.00 34.11 1.40
2088 2156 1.576577 TCATGGTCACTGCTGGATCT 58.423 50.000 0.00 0.00 0.00 2.75
2097 2165 0.617413 CTGCTGGATCTGAGGGTGTT 59.383 55.000 0.00 0.00 0.00 3.32
2109 2177 0.846693 AGGGTGTTGCTTCAGAGGTT 59.153 50.000 0.00 0.00 0.00 3.50
2110 2178 2.038557 GAGGGTGTTGCTTCAGAGGTTA 59.961 50.000 0.00 0.00 0.00 2.85
2122 2190 4.623932 TCAGAGGTTAGTTGATTGCAGT 57.376 40.909 0.00 0.00 0.00 4.40
2124 2192 3.438087 CAGAGGTTAGTTGATTGCAGTGG 59.562 47.826 0.00 0.00 0.00 4.00
2197 2265 5.504665 GCAACACCAATATAGCACTGATCAC 60.505 44.000 0.00 0.00 0.00 3.06
2204 2272 7.164122 CCAATATAGCACTGATCACAATACCT 58.836 38.462 0.00 0.00 0.00 3.08
2207 2275 4.833478 AGCACTGATCACAATACCTCTT 57.167 40.909 0.00 0.00 0.00 2.85
2212 2280 7.124298 AGCACTGATCACAATACCTCTTTACTA 59.876 37.037 0.00 0.00 0.00 1.82
2213 2281 7.928706 GCACTGATCACAATACCTCTTTACTAT 59.071 37.037 0.00 0.00 0.00 2.12
2214 2282 9.254133 CACTGATCACAATACCTCTTTACTATG 57.746 37.037 0.00 0.00 0.00 2.23
2279 2353 9.863845 TCTATTTAGACAACAAACGATGATACA 57.136 29.630 0.00 0.00 0.00 2.29
2289 2363 8.859156 CAACAAACGATGATACATTAAAAAGGG 58.141 33.333 0.00 0.00 0.00 3.95
2290 2364 8.117813 ACAAACGATGATACATTAAAAAGGGT 57.882 30.769 0.00 0.00 0.00 4.34
2292 2366 6.693315 ACGATGATACATTAAAAAGGGTGG 57.307 37.500 0.00 0.00 0.00 4.61
2293 2367 6.419791 ACGATGATACATTAAAAAGGGTGGA 58.580 36.000 0.00 0.00 0.00 4.02
2294 2368 6.542370 ACGATGATACATTAAAAAGGGTGGAG 59.458 38.462 0.00 0.00 0.00 3.86
2295 2369 6.513393 CGATGATACATTAAAAAGGGTGGAGC 60.513 42.308 0.00 0.00 0.00 4.70
2296 2370 4.638421 TGATACATTAAAAAGGGTGGAGCG 59.362 41.667 0.00 0.00 0.00 5.03
2329 2403 7.067494 ACAATCTAAAGGATGGTCATTGCTAAC 59.933 37.037 0.00 0.00 33.54 2.34
2349 2423 9.077885 TGCTAACATTTCTTCCAAATCTTAGTT 57.922 29.630 0.00 0.00 0.00 2.24
2350 2424 9.914131 GCTAACATTTCTTCCAAATCTTAGTTT 57.086 29.630 0.00 0.00 0.00 2.66
2406 2480 6.823689 AGAAGTACATATGTCCATGTTTGTCC 59.176 38.462 12.68 0.00 39.77 4.02
2423 2498 4.451629 TGTCCGAACTAGTCCTTTGATC 57.548 45.455 0.00 0.00 0.00 2.92
2424 2499 3.830178 TGTCCGAACTAGTCCTTTGATCA 59.170 43.478 0.00 0.00 0.00 2.92
2425 2500 4.282449 TGTCCGAACTAGTCCTTTGATCAA 59.718 41.667 3.38 3.38 0.00 2.57
2426 2501 5.221561 TGTCCGAACTAGTCCTTTGATCAAA 60.222 40.000 19.45 19.45 0.00 2.69
2427 2502 5.875359 GTCCGAACTAGTCCTTTGATCAAAT 59.125 40.000 20.76 9.08 0.00 2.32
2428 2503 6.371825 GTCCGAACTAGTCCTTTGATCAAATT 59.628 38.462 20.76 10.55 0.00 1.82
2429 2504 6.940298 TCCGAACTAGTCCTTTGATCAAATTT 59.060 34.615 20.76 9.54 0.00 1.82
2430 2505 8.098286 TCCGAACTAGTCCTTTGATCAAATTTA 58.902 33.333 20.76 7.18 0.00 1.40
2431 2506 8.726988 CCGAACTAGTCCTTTGATCAAATTTAA 58.273 33.333 20.76 4.84 0.00 1.52
2443 2518 6.442961 TGATCAAATTTAATCATCCCCACCT 58.557 36.000 0.00 0.00 0.00 4.00
2451 2526 7.566658 TTTAATCATCCCCACCTTTTTGAAT 57.433 32.000 0.00 0.00 0.00 2.57
2469 2544 8.721019 TTTTGAATTCTTTTTCTGATTGCAGT 57.279 26.923 7.05 0.00 42.84 4.40
2491 2566 2.425143 TGGGCAGAGAAGCTATTTGG 57.575 50.000 0.00 0.00 34.17 3.28
2513 2588 2.102070 TGTATACAAGTTGGGCACGG 57.898 50.000 7.96 0.00 0.00 4.94
2520 2595 3.670377 GTTGGGCACGGAGGCAAC 61.670 66.667 6.07 0.00 46.44 4.17
2524 2599 3.284449 GGCACGGAGGCAACGTTT 61.284 61.111 0.00 0.00 43.58 3.60
2557 2632 4.343526 ACTGGTAGAGAAGATCGCATCAAT 59.656 41.667 0.00 0.00 0.00 2.57
2569 2644 6.705302 AGATCGCATCAATAAGTGGTCATAT 58.295 36.000 0.00 0.00 0.00 1.78
2582 2657 1.331756 GGTCATATCCAGTTTGCAGCG 59.668 52.381 0.00 0.00 0.00 5.18
2583 2658 2.009774 GTCATATCCAGTTTGCAGCGT 58.990 47.619 0.00 0.00 0.00 5.07
2679 2754 0.597568 TGAAAATTCTGGCACTGGCG 59.402 50.000 0.00 0.00 42.47 5.69
2824 2899 6.863126 TCGTGTGCATGTACTGAATATATCTG 59.137 38.462 15.25 0.00 0.00 2.90
2859 2934 8.292011 GCAACTTGCAAAATATAGGAGCACCT 62.292 42.308 8.12 8.12 45.62 4.00
3036 3111 8.303156 CAATTATGTTGGTGTAAATCAGAACCA 58.697 33.333 0.00 0.00 40.90 3.67
3040 3115 5.766150 TTGGTGTAAATCAGAACCAACAG 57.234 39.130 2.08 0.00 45.41 3.16
3071 3165 3.165875 TGTGAAGTCTCTGGGTTCTAGG 58.834 50.000 0.00 0.00 0.00 3.02
3074 3168 4.098807 GTGAAGTCTCTGGGTTCTAGGATC 59.901 50.000 0.00 0.00 0.00 3.36
3078 3172 6.288096 AGTCTCTGGGTTCTAGGATCTTAT 57.712 41.667 0.00 0.00 0.00 1.73
3083 3177 6.444704 TCTGGGTTCTAGGATCTTATGTCTT 58.555 40.000 0.00 0.00 0.00 3.01
3166 3260 3.742369 CCCAGATTGTGTGTGCAATTTTC 59.258 43.478 0.00 0.00 38.98 2.29
3167 3261 4.370049 CCAGATTGTGTGTGCAATTTTCA 58.630 39.130 0.00 0.00 38.98 2.69
3212 3308 5.465532 TTTGCATCAGAAGGCATTTTACA 57.534 34.783 1.30 0.00 42.59 2.41
3481 3577 3.649073 TGTGAGAGTTCAACACATACCG 58.351 45.455 0.00 0.00 39.17 4.02
3685 3781 5.181622 ACAAGAGAACTAAGAGTACCAGACG 59.818 44.000 0.00 0.00 0.00 4.18
3804 3900 0.321653 GCATCCAGTTGTCCGACCTT 60.322 55.000 0.00 0.00 0.00 3.50
3904 4000 5.470098 AGAATTCGTGTGCAGTTCTGTAAAT 59.530 36.000 0.00 0.00 0.00 1.40
4112 8489 7.704789 ATGCTTTTGAAAGTAGCTTTTTCAG 57.295 32.000 19.21 12.77 43.22 3.02
4204 8581 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
4302 8679 2.048127 GCAGAAACTCCGCGTCCT 60.048 61.111 4.92 0.00 0.00 3.85
4303 8680 2.383527 GCAGAAACTCCGCGTCCTG 61.384 63.158 4.92 3.96 0.00 3.86
4304 8681 1.006102 CAGAAACTCCGCGTCCTGT 60.006 57.895 4.92 0.00 0.00 4.00
4305 8682 0.242825 CAGAAACTCCGCGTCCTGTA 59.757 55.000 4.92 0.00 0.00 2.74
4306 8683 0.963962 AGAAACTCCGCGTCCTGTAA 59.036 50.000 4.92 0.00 0.00 2.41
4307 8684 1.342174 AGAAACTCCGCGTCCTGTAAA 59.658 47.619 4.92 0.00 0.00 2.01
4348 8725 6.210385 ACAGATATAGCACATTACCAGAGGAG 59.790 42.308 0.00 0.00 0.00 3.69
4420 8797 5.757320 CAGGTATAGGAAAGCATGTTCTCTG 59.243 44.000 0.00 0.00 0.00 3.35
4425 8802 3.149196 GGAAAGCATGTTCTCTGACCAA 58.851 45.455 0.00 0.00 0.00 3.67
4426 8803 3.569701 GGAAAGCATGTTCTCTGACCAAA 59.430 43.478 0.00 0.00 0.00 3.28
4428 8805 3.498774 AGCATGTTCTCTGACCAAACT 57.501 42.857 0.00 0.00 0.00 2.66
4436 8813 5.221461 TGTTCTCTGACCAAACTCTTACTCC 60.221 44.000 0.00 0.00 0.00 3.85
4441 8818 3.005472 TGACCAAACTCTTACTCCGACAG 59.995 47.826 0.00 0.00 0.00 3.51
4447 8824 1.666700 CTCTTACTCCGACAGTCCGAG 59.333 57.143 15.18 15.18 36.43 4.63
4459 8836 1.738350 CAGTCCGAGTCGTCATGTACT 59.262 52.381 12.31 2.38 0.00 2.73
4493 8870 1.172180 TTTCCCTGTCAAGCTTGCGG 61.172 55.000 21.99 19.39 0.00 5.69
4661 9038 1.567357 TGTGGCCATAGTGCTGACTA 58.433 50.000 9.72 0.00 39.07 2.59
4841 9218 1.606531 GCTCCTGAACCTGATGGCT 59.393 57.895 0.00 0.00 36.63 4.75
4844 9221 0.250234 TCCTGAACCTGATGGCTTCG 59.750 55.000 0.00 0.00 36.63 3.79
4846 9223 0.392193 CTGAACCTGATGGCTTCGCT 60.392 55.000 0.00 0.00 36.63 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.324163 ACTATTGAAGTTGGACTAAACATGTC 57.676 34.615 0.00 0.00 33.35 3.06
29 30 9.787435 TTACTATTGAAGTTGGACTAAACATGT 57.213 29.630 0.00 0.00 39.80 3.21
39 40 9.952030 TGTGTTCATATTACTATTGAAGTTGGA 57.048 29.630 0.00 0.00 39.80 3.53
51 52 9.665719 TGTGTCAATACATGTGTTCATATTACT 57.334 29.630 9.11 0.00 38.08 2.24
52 53 9.702726 GTGTGTCAATACATGTGTTCATATTAC 57.297 33.333 9.11 2.35 38.08 1.89
53 54 9.442047 TGTGTGTCAATACATGTGTTCATATTA 57.558 29.630 9.11 0.00 38.08 0.98
54 55 8.334263 TGTGTGTCAATACATGTGTTCATATT 57.666 30.769 9.11 0.00 38.08 1.28
55 56 7.066163 CCTGTGTGTCAATACATGTGTTCATAT 59.934 37.037 9.11 0.00 38.08 1.78
56 57 6.371271 CCTGTGTGTCAATACATGTGTTCATA 59.629 38.462 9.11 0.00 38.08 2.15
57 58 5.181811 CCTGTGTGTCAATACATGTGTTCAT 59.818 40.000 9.11 0.00 38.08 2.57
58 59 4.514816 CCTGTGTGTCAATACATGTGTTCA 59.485 41.667 9.11 0.34 38.08 3.18
59 60 4.083324 CCCTGTGTGTCAATACATGTGTTC 60.083 45.833 9.11 0.00 38.08 3.18
60 61 3.820467 CCCTGTGTGTCAATACATGTGTT 59.180 43.478 9.11 5.07 38.08 3.32
61 62 3.411446 CCCTGTGTGTCAATACATGTGT 58.589 45.455 9.11 0.00 38.08 3.72
62 63 2.749076 CCCCTGTGTGTCAATACATGTG 59.251 50.000 9.11 0.00 38.08 3.21
63 64 2.879756 GCCCCTGTGTGTCAATACATGT 60.880 50.000 2.69 2.69 38.08 3.21
64 65 1.745087 GCCCCTGTGTGTCAATACATG 59.255 52.381 0.00 0.00 38.08 3.21
65 66 1.678728 CGCCCCTGTGTGTCAATACAT 60.679 52.381 0.00 0.00 38.08 2.29
66 67 0.321210 CGCCCCTGTGTGTCAATACA 60.321 55.000 0.00 0.00 0.00 2.29
67 68 0.036765 TCGCCCCTGTGTGTCAATAC 60.037 55.000 0.00 0.00 0.00 1.89
68 69 0.687920 TTCGCCCCTGTGTGTCAATA 59.312 50.000 0.00 0.00 0.00 1.90
69 70 0.606401 CTTCGCCCCTGTGTGTCAAT 60.606 55.000 0.00 0.00 0.00 2.57
70 71 1.227823 CTTCGCCCCTGTGTGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
71 72 2.137528 TCTTCGCCCCTGTGTGTCA 61.138 57.895 0.00 0.00 0.00 3.58
72 73 1.668151 GTCTTCGCCCCTGTGTGTC 60.668 63.158 0.00 0.00 0.00 3.67
73 74 2.383245 CTGTCTTCGCCCCTGTGTGT 62.383 60.000 0.00 0.00 0.00 3.72
74 75 1.669115 CTGTCTTCGCCCCTGTGTG 60.669 63.158 0.00 0.00 0.00 3.82
75 76 2.743718 CTGTCTTCGCCCCTGTGT 59.256 61.111 0.00 0.00 0.00 3.72
76 77 2.046892 CCTGTCTTCGCCCCTGTG 60.047 66.667 0.00 0.00 0.00 3.66
77 78 2.203788 TCCTGTCTTCGCCCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
78 79 2.111999 TTGTCCTGTCTTCGCCCCTG 62.112 60.000 0.00 0.00 0.00 4.45
79 80 1.831652 CTTGTCCTGTCTTCGCCCCT 61.832 60.000 0.00 0.00 0.00 4.79
80 81 1.376037 CTTGTCCTGTCTTCGCCCC 60.376 63.158 0.00 0.00 0.00 5.80
81 82 1.376037 CCTTGTCCTGTCTTCGCCC 60.376 63.158 0.00 0.00 0.00 6.13
82 83 1.376037 CCCTTGTCCTGTCTTCGCC 60.376 63.158 0.00 0.00 0.00 5.54
83 84 2.035442 GCCCTTGTCCTGTCTTCGC 61.035 63.158 0.00 0.00 0.00 4.70
84 85 0.036010 ATGCCCTTGTCCTGTCTTCG 60.036 55.000 0.00 0.00 0.00 3.79
85 86 1.457346 CATGCCCTTGTCCTGTCTTC 58.543 55.000 0.00 0.00 0.00 2.87
86 87 0.610232 GCATGCCCTTGTCCTGTCTT 60.610 55.000 6.36 0.00 0.00 3.01
87 88 1.001641 GCATGCCCTTGTCCTGTCT 60.002 57.895 6.36 0.00 0.00 3.41
88 89 2.048603 GGCATGCCCTTGTCCTGTC 61.049 63.158 27.24 0.00 0.00 3.51
89 90 2.036256 GGCATGCCCTTGTCCTGT 59.964 61.111 27.24 0.00 0.00 4.00
99 100 1.066286 TGTAGCATTTTTGGGCATGCC 60.066 47.619 29.47 29.47 45.99 4.40
100 101 2.001872 GTGTAGCATTTTTGGGCATGC 58.998 47.619 9.90 9.90 45.30 4.06
101 102 3.598019 AGTGTAGCATTTTTGGGCATG 57.402 42.857 0.00 0.00 0.00 4.06
102 103 4.380444 CGTAAGTGTAGCATTTTTGGGCAT 60.380 41.667 0.00 0.00 0.00 4.40
103 104 3.057876 CGTAAGTGTAGCATTTTTGGGCA 60.058 43.478 0.00 0.00 0.00 5.36
104 105 3.498082 CGTAAGTGTAGCATTTTTGGGC 58.502 45.455 0.00 0.00 0.00 5.36
105 106 3.754323 TCCGTAAGTGTAGCATTTTTGGG 59.246 43.478 0.00 0.00 0.00 4.12
106 107 4.454504 AGTCCGTAAGTGTAGCATTTTTGG 59.545 41.667 0.00 0.00 0.00 3.28
107 108 5.178623 TGAGTCCGTAAGTGTAGCATTTTTG 59.821 40.000 0.00 0.00 0.00 2.44
108 109 5.302360 TGAGTCCGTAAGTGTAGCATTTTT 58.698 37.500 0.00 0.00 0.00 1.94
109 110 4.890088 TGAGTCCGTAAGTGTAGCATTTT 58.110 39.130 0.00 0.00 0.00 1.82
110 111 4.530710 TGAGTCCGTAAGTGTAGCATTT 57.469 40.909 0.00 0.00 0.00 2.32
111 112 4.530710 TTGAGTCCGTAAGTGTAGCATT 57.469 40.909 0.00 0.00 0.00 3.56
112 113 4.737855 ATTGAGTCCGTAAGTGTAGCAT 57.262 40.909 0.00 0.00 0.00 3.79
113 114 4.219944 AGAATTGAGTCCGTAAGTGTAGCA 59.780 41.667 0.00 0.00 0.00 3.49
114 115 4.745649 AGAATTGAGTCCGTAAGTGTAGC 58.254 43.478 0.00 0.00 0.00 3.58
115 116 6.746364 GTGTAGAATTGAGTCCGTAAGTGTAG 59.254 42.308 0.00 0.00 0.00 2.74
116 117 6.207221 TGTGTAGAATTGAGTCCGTAAGTGTA 59.793 38.462 0.00 0.00 0.00 2.90
117 118 5.010314 TGTGTAGAATTGAGTCCGTAAGTGT 59.990 40.000 0.00 0.00 0.00 3.55
118 119 5.345202 GTGTGTAGAATTGAGTCCGTAAGTG 59.655 44.000 0.00 0.00 0.00 3.16
119 120 5.243283 AGTGTGTAGAATTGAGTCCGTAAGT 59.757 40.000 0.00 0.00 0.00 2.24
120 121 5.710984 AGTGTGTAGAATTGAGTCCGTAAG 58.289 41.667 0.00 0.00 0.00 2.34
121 122 5.618418 CGAGTGTGTAGAATTGAGTCCGTAA 60.618 44.000 0.00 0.00 0.00 3.18
122 123 4.142752 CGAGTGTGTAGAATTGAGTCCGTA 60.143 45.833 0.00 0.00 0.00 4.02
123 124 3.366070 CGAGTGTGTAGAATTGAGTCCGT 60.366 47.826 0.00 0.00 0.00 4.69
124 125 3.119955 TCGAGTGTGTAGAATTGAGTCCG 60.120 47.826 0.00 0.00 0.00 4.79
125 126 4.167268 GTCGAGTGTGTAGAATTGAGTCC 58.833 47.826 0.00 0.00 0.00 3.85
126 127 4.082679 AGGTCGAGTGTGTAGAATTGAGTC 60.083 45.833 0.00 0.00 0.00 3.36
127 128 3.827302 AGGTCGAGTGTGTAGAATTGAGT 59.173 43.478 0.00 0.00 0.00 3.41
128 129 4.442375 AGGTCGAGTGTGTAGAATTGAG 57.558 45.455 0.00 0.00 0.00 3.02
129 130 5.650703 TCATAGGTCGAGTGTGTAGAATTGA 59.349 40.000 0.00 0.00 0.00 2.57
130 131 5.891451 TCATAGGTCGAGTGTGTAGAATTG 58.109 41.667 0.00 0.00 0.00 2.32
131 132 5.450688 GCTCATAGGTCGAGTGTGTAGAATT 60.451 44.000 0.00 0.00 32.83 2.17
132 133 4.036971 GCTCATAGGTCGAGTGTGTAGAAT 59.963 45.833 0.00 0.00 32.83 2.40
133 134 3.377485 GCTCATAGGTCGAGTGTGTAGAA 59.623 47.826 0.00 0.00 32.83 2.10
134 135 2.943690 GCTCATAGGTCGAGTGTGTAGA 59.056 50.000 0.00 0.00 32.83 2.59
135 136 2.946329 AGCTCATAGGTCGAGTGTGTAG 59.054 50.000 0.00 0.00 32.83 2.74
136 137 3.000684 AGCTCATAGGTCGAGTGTGTA 57.999 47.619 0.00 0.00 32.83 2.90
137 138 1.840737 AGCTCATAGGTCGAGTGTGT 58.159 50.000 0.00 0.00 32.83 3.72
138 139 3.378742 AGTTAGCTCATAGGTCGAGTGTG 59.621 47.826 0.00 0.00 32.83 3.82
139 140 3.622630 AGTTAGCTCATAGGTCGAGTGT 58.377 45.455 0.00 0.00 32.83 3.55
140 141 3.003897 GGAGTTAGCTCATAGGTCGAGTG 59.996 52.174 8.96 0.00 43.37 3.51
141 142 3.215975 GGAGTTAGCTCATAGGTCGAGT 58.784 50.000 8.96 0.00 43.37 4.18
142 143 3.215151 TGGAGTTAGCTCATAGGTCGAG 58.785 50.000 8.96 0.00 43.37 4.04
143 144 3.292492 TGGAGTTAGCTCATAGGTCGA 57.708 47.619 8.96 0.00 43.37 4.20
144 145 3.057174 GGATGGAGTTAGCTCATAGGTCG 60.057 52.174 8.96 0.00 43.37 4.79
145 146 4.156477 AGGATGGAGTTAGCTCATAGGTC 58.844 47.826 8.96 0.00 43.37 3.85
146 147 4.206244 AGGATGGAGTTAGCTCATAGGT 57.794 45.455 8.96 0.00 43.37 3.08
147 148 5.070981 TCAAAGGATGGAGTTAGCTCATAGG 59.929 44.000 8.96 0.00 43.37 2.57
148 149 6.166984 TCAAAGGATGGAGTTAGCTCATAG 57.833 41.667 8.96 0.00 43.37 2.23
149 150 6.753913 ATCAAAGGATGGAGTTAGCTCATA 57.246 37.500 8.96 0.00 43.37 2.15
150 151 5.643421 ATCAAAGGATGGAGTTAGCTCAT 57.357 39.130 8.96 0.59 43.37 2.90
151 152 5.441718 AATCAAAGGATGGAGTTAGCTCA 57.558 39.130 8.96 0.00 36.75 4.26
152 153 5.882557 TGAAATCAAAGGATGGAGTTAGCTC 59.117 40.000 0.00 0.00 35.33 4.09
153 154 5.819991 TGAAATCAAAGGATGGAGTTAGCT 58.180 37.500 0.00 0.00 32.92 3.32
154 155 5.449725 GCTGAAATCAAAGGATGGAGTTAGC 60.450 44.000 0.00 0.00 32.92 3.09
155 156 5.220739 CGCTGAAATCAAAGGATGGAGTTAG 60.221 44.000 0.00 0.00 32.92 2.34
156 157 4.635765 CGCTGAAATCAAAGGATGGAGTTA 59.364 41.667 0.00 0.00 32.92 2.24
157 158 3.441572 CGCTGAAATCAAAGGATGGAGTT 59.558 43.478 0.00 0.00 32.92 3.01
158 159 3.012518 CGCTGAAATCAAAGGATGGAGT 58.987 45.455 0.00 0.00 32.92 3.85
159 160 3.012518 ACGCTGAAATCAAAGGATGGAG 58.987 45.455 0.00 0.00 32.92 3.86
160 161 2.749076 CACGCTGAAATCAAAGGATGGA 59.251 45.455 0.00 0.00 32.92 3.41
161 162 2.749076 TCACGCTGAAATCAAAGGATGG 59.251 45.455 0.00 0.00 32.92 3.51
162 163 3.189080 TGTCACGCTGAAATCAAAGGATG 59.811 43.478 0.00 0.00 32.92 3.51
163 164 3.189287 GTGTCACGCTGAAATCAAAGGAT 59.811 43.478 0.00 0.00 34.43 3.24
164 165 2.548057 GTGTCACGCTGAAATCAAAGGA 59.452 45.455 0.00 0.00 0.00 3.36
165 166 2.549754 AGTGTCACGCTGAAATCAAAGG 59.450 45.455 0.00 0.00 0.00 3.11
166 167 3.364366 GGAGTGTCACGCTGAAATCAAAG 60.364 47.826 0.00 0.00 0.00 2.77
167 168 2.548057 GGAGTGTCACGCTGAAATCAAA 59.452 45.455 0.00 0.00 0.00 2.69
168 169 2.143122 GGAGTGTCACGCTGAAATCAA 58.857 47.619 0.00 0.00 0.00 2.57
169 170 1.608025 GGGAGTGTCACGCTGAAATCA 60.608 52.381 0.00 0.00 0.00 2.57
170 171 1.079503 GGGAGTGTCACGCTGAAATC 58.920 55.000 0.00 0.00 0.00 2.17
171 172 0.687354 AGGGAGTGTCACGCTGAAAT 59.313 50.000 0.00 0.00 0.00 2.17
172 173 1.334160 TAGGGAGTGTCACGCTGAAA 58.666 50.000 0.00 0.00 32.98 2.69
173 174 1.204704 CATAGGGAGTGTCACGCTGAA 59.795 52.381 0.00 0.00 32.98 3.02
174 175 0.817654 CATAGGGAGTGTCACGCTGA 59.182 55.000 0.00 0.00 32.98 4.26
175 176 0.807667 GCATAGGGAGTGTCACGCTG 60.808 60.000 0.00 0.00 32.98 5.18
176 177 1.517832 GCATAGGGAGTGTCACGCT 59.482 57.895 6.67 0.00 34.98 5.07
177 178 1.521681 GGCATAGGGAGTGTCACGC 60.522 63.158 0.00 0.00 0.00 5.34
178 179 1.338337 CTAGGCATAGGGAGTGTCACG 59.662 57.143 0.00 0.00 0.00 4.35
179 180 2.389715 ACTAGGCATAGGGAGTGTCAC 58.610 52.381 10.60 0.00 32.90 3.67
180 181 2.848678 ACTAGGCATAGGGAGTGTCA 57.151 50.000 10.60 0.00 32.90 3.58
181 182 3.570550 CACTACTAGGCATAGGGAGTGTC 59.429 52.174 23.82 0.00 39.70 3.67
182 183 3.204606 TCACTACTAGGCATAGGGAGTGT 59.795 47.826 27.59 11.56 42.31 3.55
183 184 3.570550 GTCACTACTAGGCATAGGGAGTG 59.429 52.174 25.16 25.16 42.67 3.51
184 185 3.436761 GGTCACTACTAGGCATAGGGAGT 60.437 52.174 10.60 9.59 32.68 3.85
185 186 3.158676 GGTCACTACTAGGCATAGGGAG 58.841 54.545 10.60 8.96 32.68 4.30
186 187 2.158355 GGGTCACTACTAGGCATAGGGA 60.158 54.545 10.60 0.00 32.90 4.20
187 188 2.249139 GGGTCACTACTAGGCATAGGG 58.751 57.143 10.60 4.84 32.90 3.53
188 189 2.894126 CTGGGTCACTACTAGGCATAGG 59.106 54.545 10.60 0.00 32.90 2.57
189 190 3.567397 ACTGGGTCACTACTAGGCATAG 58.433 50.000 3.34 3.34 34.96 2.23
190 191 3.682592 ACTGGGTCACTACTAGGCATA 57.317 47.619 0.00 0.00 0.00 3.14
191 192 2.552093 ACTGGGTCACTACTAGGCAT 57.448 50.000 0.00 0.00 0.00 4.40
192 193 2.176889 GAACTGGGTCACTACTAGGCA 58.823 52.381 0.00 0.00 0.00 4.75
193 194 1.134560 CGAACTGGGTCACTACTAGGC 59.865 57.143 0.00 0.00 0.00 3.93
194 195 2.163815 CACGAACTGGGTCACTACTAGG 59.836 54.545 0.00 0.00 0.00 3.02
195 196 3.079578 TCACGAACTGGGTCACTACTAG 58.920 50.000 0.00 0.00 0.00 2.57
196 197 2.816087 GTCACGAACTGGGTCACTACTA 59.184 50.000 0.00 0.00 0.00 1.82
197 198 1.612463 GTCACGAACTGGGTCACTACT 59.388 52.381 0.00 0.00 0.00 2.57
198 199 1.338973 TGTCACGAACTGGGTCACTAC 59.661 52.381 0.00 0.00 0.00 2.73
199 200 1.694844 TGTCACGAACTGGGTCACTA 58.305 50.000 0.00 0.00 0.00 2.74
200 201 1.000955 GATGTCACGAACTGGGTCACT 59.999 52.381 0.00 0.00 0.00 3.41
201 202 1.270094 TGATGTCACGAACTGGGTCAC 60.270 52.381 0.00 0.00 0.00 3.67
202 203 1.044611 TGATGTCACGAACTGGGTCA 58.955 50.000 0.00 0.00 0.00 4.02
203 204 2.163818 TTGATGTCACGAACTGGGTC 57.836 50.000 0.00 0.00 0.00 4.46
204 205 2.631160 TTTGATGTCACGAACTGGGT 57.369 45.000 0.00 0.00 0.00 4.51
205 206 4.216257 AGAATTTTGATGTCACGAACTGGG 59.784 41.667 0.00 0.00 0.00 4.45
206 207 5.362556 AGAATTTTGATGTCACGAACTGG 57.637 39.130 0.00 0.00 0.00 4.00
207 208 6.912051 TCAAAGAATTTTGATGTCACGAACTG 59.088 34.615 0.00 0.00 45.77 3.16
208 209 7.026631 TCAAAGAATTTTGATGTCACGAACT 57.973 32.000 0.00 0.00 45.77 3.01
230 231 9.845740 AGCAATTACAATAGGTGTTACATATCA 57.154 29.630 0.00 0.00 41.98 2.15
232 233 8.988934 CGAGCAATTACAATAGGTGTTACATAT 58.011 33.333 0.00 0.00 41.98 1.78
233 234 8.198778 TCGAGCAATTACAATAGGTGTTACATA 58.801 33.333 0.00 0.00 41.98 2.29
234 235 7.045416 TCGAGCAATTACAATAGGTGTTACAT 58.955 34.615 0.00 0.00 41.98 2.29
235 236 6.399743 TCGAGCAATTACAATAGGTGTTACA 58.600 36.000 0.00 0.00 41.98 2.41
236 237 6.897259 TCGAGCAATTACAATAGGTGTTAC 57.103 37.500 0.00 0.00 41.98 2.50
237 238 7.277098 GTCTTCGAGCAATTACAATAGGTGTTA 59.723 37.037 0.00 0.00 41.98 2.41
238 239 6.092259 GTCTTCGAGCAATTACAATAGGTGTT 59.908 38.462 0.00 0.00 41.98 3.32
239 240 5.581085 GTCTTCGAGCAATTACAATAGGTGT 59.419 40.000 0.00 0.00 44.82 4.16
240 241 5.580691 TGTCTTCGAGCAATTACAATAGGTG 59.419 40.000 0.00 0.00 0.00 4.00
241 242 5.730550 TGTCTTCGAGCAATTACAATAGGT 58.269 37.500 0.00 0.00 0.00 3.08
242 243 5.812642 ACTGTCTTCGAGCAATTACAATAGG 59.187 40.000 0.00 0.00 0.00 2.57
243 244 6.754209 AGACTGTCTTCGAGCAATTACAATAG 59.246 38.462 4.06 0.00 0.00 1.73
244 245 6.631016 AGACTGTCTTCGAGCAATTACAATA 58.369 36.000 4.06 0.00 0.00 1.90
245 246 5.482908 AGACTGTCTTCGAGCAATTACAAT 58.517 37.500 4.06 0.00 0.00 2.71
246 247 4.883083 AGACTGTCTTCGAGCAATTACAA 58.117 39.130 4.06 0.00 0.00 2.41
247 248 4.521130 AGACTGTCTTCGAGCAATTACA 57.479 40.909 4.06 0.00 0.00 2.41
248 249 5.038033 CCTAGACTGTCTTCGAGCAATTAC 58.962 45.833 16.53 0.00 0.00 1.89
249 250 4.098044 CCCTAGACTGTCTTCGAGCAATTA 59.902 45.833 16.53 0.00 0.00 1.40
250 251 3.118956 CCCTAGACTGTCTTCGAGCAATT 60.119 47.826 16.53 0.00 0.00 2.32
251 252 2.428890 CCCTAGACTGTCTTCGAGCAAT 59.571 50.000 16.53 0.00 0.00 3.56
252 253 1.819288 CCCTAGACTGTCTTCGAGCAA 59.181 52.381 16.53 0.00 0.00 3.91
253 254 1.464734 CCCTAGACTGTCTTCGAGCA 58.535 55.000 16.53 0.00 0.00 4.26
254 255 0.101579 GCCCTAGACTGTCTTCGAGC 59.898 60.000 16.53 10.33 0.00 5.03
255 256 0.741915 GGCCCTAGACTGTCTTCGAG 59.258 60.000 16.53 7.34 0.00 4.04
256 257 0.331954 AGGCCCTAGACTGTCTTCGA 59.668 55.000 16.53 0.00 0.00 3.71
257 258 0.457851 CAGGCCCTAGACTGTCTTCG 59.542 60.000 16.53 7.64 0.00 3.79
258 259 1.853963 TCAGGCCCTAGACTGTCTTC 58.146 55.000 16.53 3.42 36.17 2.87
259 260 2.114616 CATCAGGCCCTAGACTGTCTT 58.885 52.381 16.53 0.37 36.17 3.01
260 261 1.786937 CATCAGGCCCTAGACTGTCT 58.213 55.000 15.57 15.57 36.17 3.41
261 262 0.105778 GCATCAGGCCCTAGACTGTC 59.894 60.000 0.00 0.00 36.17 3.51
262 263 2.216148 GCATCAGGCCCTAGACTGT 58.784 57.895 0.00 0.00 36.17 3.55
273 274 2.746375 AACCTAGGCCGGCATCAGG 61.746 63.158 30.85 29.65 0.00 3.86
274 275 1.524621 CAACCTAGGCCGGCATCAG 60.525 63.158 30.85 20.50 0.00 2.90
275 276 2.589540 CAACCTAGGCCGGCATCA 59.410 61.111 30.85 11.47 0.00 3.07
276 277 2.056906 ATCCAACCTAGGCCGGCATC 62.057 60.000 30.85 12.35 0.00 3.91
277 278 1.645402 AATCCAACCTAGGCCGGCAT 61.645 55.000 30.85 26.24 0.00 4.40
278 279 2.265467 GAATCCAACCTAGGCCGGCA 62.265 60.000 30.85 7.71 0.00 5.69
279 280 1.526225 GAATCCAACCTAGGCCGGC 60.526 63.158 21.18 21.18 0.00 6.13
280 281 0.463833 GTGAATCCAACCTAGGCCGG 60.464 60.000 9.30 9.90 0.00 6.13
281 282 0.810031 CGTGAATCCAACCTAGGCCG 60.810 60.000 9.30 0.00 0.00 6.13
282 283 0.252197 ACGTGAATCCAACCTAGGCC 59.748 55.000 9.30 0.00 0.00 5.19
283 284 1.369625 CACGTGAATCCAACCTAGGC 58.630 55.000 10.90 0.00 0.00 3.93
284 285 2.012051 GCCACGTGAATCCAACCTAGG 61.012 57.143 19.30 7.41 0.00 3.02
285 286 1.369625 GCCACGTGAATCCAACCTAG 58.630 55.000 19.30 0.00 0.00 3.02
286 287 0.035820 GGCCACGTGAATCCAACCTA 60.036 55.000 19.30 0.00 0.00 3.08
287 288 1.303317 GGCCACGTGAATCCAACCT 60.303 57.895 19.30 0.00 0.00 3.50
288 289 0.893727 AAGGCCACGTGAATCCAACC 60.894 55.000 19.30 6.46 0.00 3.77
289 290 1.737793 CTAAGGCCACGTGAATCCAAC 59.262 52.381 19.30 0.00 0.00 3.77
290 291 1.339631 CCTAAGGCCACGTGAATCCAA 60.340 52.381 19.30 6.72 0.00 3.53
291 292 0.251916 CCTAAGGCCACGTGAATCCA 59.748 55.000 19.30 0.00 0.00 3.41
292 293 0.463833 CCCTAAGGCCACGTGAATCC 60.464 60.000 19.30 14.72 0.00 3.01
293 294 0.252197 ACCCTAAGGCCACGTGAATC 59.748 55.000 19.30 5.87 36.11 2.52
294 295 0.696501 AACCCTAAGGCCACGTGAAT 59.303 50.000 19.30 2.25 36.11 2.57
295 296 0.035739 GAACCCTAAGGCCACGTGAA 59.964 55.000 19.30 0.00 36.11 3.18
296 297 1.675219 GAACCCTAAGGCCACGTGA 59.325 57.895 19.30 0.00 36.11 4.35
297 298 1.376812 GGAACCCTAAGGCCACGTG 60.377 63.158 9.08 9.08 36.11 4.49
298 299 1.538135 AGGAACCCTAAGGCCACGT 60.538 57.895 5.01 0.00 36.11 4.49
299 300 1.221021 GAGGAACCCTAAGGCCACG 59.779 63.158 5.01 0.00 36.11 4.94
300 301 1.221021 CGAGGAACCCTAAGGCCAC 59.779 63.158 5.01 0.00 36.11 5.01
301 302 2.666098 GCGAGGAACCCTAAGGCCA 61.666 63.158 5.01 0.00 36.11 5.36
302 303 2.189784 GCGAGGAACCCTAAGGCC 59.810 66.667 0.00 0.00 36.11 5.19
303 304 2.189784 GGCGAGGAACCCTAAGGC 59.810 66.667 0.00 0.00 36.11 4.35
304 305 1.823976 GAGGCGAGGAACCCTAAGG 59.176 63.158 0.00 0.00 31.76 2.69
305 306 1.437986 CGAGGCGAGGAACCCTAAG 59.562 63.158 0.00 0.00 31.76 2.18
306 307 2.718073 GCGAGGCGAGGAACCCTAA 61.718 63.158 0.00 0.00 31.76 2.69
307 308 3.145551 GCGAGGCGAGGAACCCTA 61.146 66.667 0.00 0.00 31.76 3.53
320 321 3.425938 GAAGCATTGTCGGCGCGAG 62.426 63.158 12.10 2.11 36.23 5.03
321 322 3.487202 GAAGCATTGTCGGCGCGA 61.487 61.111 12.10 0.00 36.08 5.87
322 323 4.520846 GGAAGCATTGTCGGCGCG 62.521 66.667 0.00 0.00 36.08 6.86
323 324 4.179579 GGGAAGCATTGTCGGCGC 62.180 66.667 0.00 0.00 36.08 6.53
324 325 1.586154 AAAGGGAAGCATTGTCGGCG 61.586 55.000 0.00 0.00 36.08 6.46
325 326 0.603065 AAAAGGGAAGCATTGTCGGC 59.397 50.000 0.00 0.00 0.00 5.54
326 327 2.423538 CCTAAAAGGGAAGCATTGTCGG 59.576 50.000 0.00 0.00 0.00 4.79
327 328 3.343617 TCCTAAAAGGGAAGCATTGTCG 58.656 45.455 0.00 0.00 35.59 4.35
328 329 4.336280 ACTCCTAAAAGGGAAGCATTGTC 58.664 43.478 0.00 0.00 35.59 3.18
329 330 4.388577 ACTCCTAAAAGGGAAGCATTGT 57.611 40.909 0.00 0.00 35.59 2.71
330 331 5.728637 AAACTCCTAAAAGGGAAGCATTG 57.271 39.130 0.00 0.00 35.59 2.82
331 332 6.747414 AAAAACTCCTAAAAGGGAAGCATT 57.253 33.333 0.00 0.00 35.59 3.56
361 362 1.595976 GCAGCACACGAACGCTAAAAA 60.596 47.619 0.00 0.00 36.50 1.94
362 363 0.041663 GCAGCACACGAACGCTAAAA 60.042 50.000 0.00 0.00 36.50 1.52
363 364 1.567537 GCAGCACACGAACGCTAAA 59.432 52.632 0.00 0.00 36.50 1.85
364 365 2.653967 CGCAGCACACGAACGCTAA 61.654 57.895 0.00 0.00 36.50 3.09
365 366 3.103289 CGCAGCACACGAACGCTA 61.103 61.111 0.00 0.00 36.50 4.26
378 379 2.515523 CATCCCCTTCCTGCGCAG 60.516 66.667 30.52 30.52 0.00 5.18
379 380 4.802051 GCATCCCCTTCCTGCGCA 62.802 66.667 10.98 10.98 0.00 6.09
380 381 4.802051 TGCATCCCCTTCCTGCGC 62.802 66.667 0.00 0.00 38.75 6.09
381 382 2.515523 CTGCATCCCCTTCCTGCG 60.516 66.667 0.00 0.00 38.75 5.18
382 383 2.832201 GCTGCATCCCCTTCCTGC 60.832 66.667 0.00 0.00 36.45 4.85
383 384 2.515523 CGCTGCATCCCCTTCCTG 60.516 66.667 0.00 0.00 0.00 3.86
384 385 2.688666 TCGCTGCATCCCCTTCCT 60.689 61.111 0.00 0.00 0.00 3.36
385 386 2.514824 GTCGCTGCATCCCCTTCC 60.515 66.667 0.00 0.00 0.00 3.46
386 387 1.377202 TTGTCGCTGCATCCCCTTC 60.377 57.895 0.00 0.00 0.00 3.46
387 388 1.675641 GTTGTCGCTGCATCCCCTT 60.676 57.895 0.00 0.00 0.00 3.95
388 389 2.045926 GTTGTCGCTGCATCCCCT 60.046 61.111 0.00 0.00 0.00 4.79
389 390 3.134127 GGTTGTCGCTGCATCCCC 61.134 66.667 0.00 0.00 0.00 4.81
390 391 3.134127 GGGTTGTCGCTGCATCCC 61.134 66.667 0.00 7.48 40.11 3.85
391 392 1.244019 AAAGGGTTGTCGCTGCATCC 61.244 55.000 0.00 0.00 36.95 3.51
392 393 0.109597 CAAAGGGTTGTCGCTGCATC 60.110 55.000 0.00 0.00 36.95 3.91
393 394 0.537143 TCAAAGGGTTGTCGCTGCAT 60.537 50.000 0.00 0.00 36.95 3.96
394 395 0.749818 TTCAAAGGGTTGTCGCTGCA 60.750 50.000 0.00 0.00 36.95 4.41
395 396 0.040067 CTTCAAAGGGTTGTCGCTGC 60.040 55.000 0.00 0.00 36.95 5.25
396 397 1.593196 TCTTCAAAGGGTTGTCGCTG 58.407 50.000 0.00 0.00 36.95 5.18
397 398 2.154462 CATCTTCAAAGGGTTGTCGCT 58.846 47.619 0.00 0.00 38.50 4.93
398 399 1.200020 CCATCTTCAAAGGGTTGTCGC 59.800 52.381 0.00 0.00 36.07 5.19
399 400 2.778299 TCCATCTTCAAAGGGTTGTCG 58.222 47.619 0.00 0.00 36.07 4.35
400 401 6.834168 TTATTCCATCTTCAAAGGGTTGTC 57.166 37.500 0.00 0.00 36.07 3.18
401 402 7.610580 TTTTATTCCATCTTCAAAGGGTTGT 57.389 32.000 0.00 0.00 36.07 3.32
402 403 9.154847 GAATTTTATTCCATCTTCAAAGGGTTG 57.845 33.333 0.00 0.00 35.95 3.77
403 404 9.104713 AGAATTTTATTCCATCTTCAAAGGGTT 57.895 29.630 0.00 0.00 0.00 4.11
404 405 8.670521 AGAATTTTATTCCATCTTCAAAGGGT 57.329 30.769 0.00 0.00 0.00 4.34
405 406 8.200120 GGAGAATTTTATTCCATCTTCAAAGGG 58.800 37.037 0.00 0.00 0.00 3.95
406 407 8.200120 GGGAGAATTTTATTCCATCTTCAAAGG 58.800 37.037 0.00 0.00 32.50 3.11
407 408 8.200120 GGGGAGAATTTTATTCCATCTTCAAAG 58.800 37.037 0.00 0.00 32.50 2.77
408 409 7.147915 CGGGGAGAATTTTATTCCATCTTCAAA 60.148 37.037 0.00 0.00 32.50 2.69
409 410 6.321181 CGGGGAGAATTTTATTCCATCTTCAA 59.679 38.462 0.00 0.00 32.50 2.69
410 411 5.827797 CGGGGAGAATTTTATTCCATCTTCA 59.172 40.000 0.00 0.00 32.50 3.02
411 412 5.278512 GCGGGGAGAATTTTATTCCATCTTC 60.279 44.000 0.00 0.00 32.50 2.87
412 413 4.584743 GCGGGGAGAATTTTATTCCATCTT 59.415 41.667 0.00 0.00 32.50 2.40
413 414 4.145052 GCGGGGAGAATTTTATTCCATCT 58.855 43.478 0.00 0.00 32.50 2.90
414 415 3.255888 GGCGGGGAGAATTTTATTCCATC 59.744 47.826 0.00 0.00 32.50 3.51
415 416 3.117131 AGGCGGGGAGAATTTTATTCCAT 60.117 43.478 0.00 0.00 32.50 3.41
416 417 2.243736 AGGCGGGGAGAATTTTATTCCA 59.756 45.455 0.00 0.00 32.50 3.53
417 418 2.945456 AGGCGGGGAGAATTTTATTCC 58.055 47.619 0.00 0.00 0.00 3.01
418 419 3.502595 GCTAGGCGGGGAGAATTTTATTC 59.497 47.826 0.00 0.00 0.00 1.75
419 420 3.487372 GCTAGGCGGGGAGAATTTTATT 58.513 45.455 0.00 0.00 0.00 1.40
420 421 2.224793 GGCTAGGCGGGGAGAATTTTAT 60.225 50.000 0.00 0.00 0.00 1.40
421 422 1.142262 GGCTAGGCGGGGAGAATTTTA 59.858 52.381 0.00 0.00 0.00 1.52
422 423 0.106669 GGCTAGGCGGGGAGAATTTT 60.107 55.000 0.00 0.00 0.00 1.82
423 424 1.532238 GGCTAGGCGGGGAGAATTT 59.468 57.895 0.00 0.00 0.00 1.82
424 425 2.452937 GGGCTAGGCGGGGAGAATT 61.453 63.158 10.58 0.00 0.00 2.17
425 426 2.849646 GGGCTAGGCGGGGAGAAT 60.850 66.667 10.58 0.00 0.00 2.40
449 450 4.794439 TCGTGAGATGCACCGCGG 62.794 66.667 26.86 26.86 44.85 6.46
450 451 2.943680 ATCTCGTGAGATGCACCGCG 62.944 60.000 11.44 0.00 45.77 6.46
451 452 0.807667 AATCTCGTGAGATGCACCGC 60.808 55.000 12.85 0.00 46.75 5.68
452 453 1.203928 GAATCTCGTGAGATGCACCG 58.796 55.000 12.85 0.00 46.75 4.94
457 458 2.471818 CCAGCTGAATCTCGTGAGATG 58.528 52.381 17.39 2.72 46.75 2.90
463 464 0.322975 AACTGCCAGCTGAATCTCGT 59.677 50.000 17.39 0.18 0.00 4.18
465 466 1.736681 GACAACTGCCAGCTGAATCTC 59.263 52.381 17.39 0.00 0.00 2.75
472 473 1.302033 CCGAAGACAACTGCCAGCT 60.302 57.895 0.00 0.00 0.00 4.24
474 475 0.249868 TCACCGAAGACAACTGCCAG 60.250 55.000 0.00 0.00 0.00 4.85
478 479 3.393800 ACAGATTCACCGAAGACAACTG 58.606 45.455 0.00 0.00 0.00 3.16
479 480 3.753294 ACAGATTCACCGAAGACAACT 57.247 42.857 0.00 0.00 0.00 3.16
480 481 4.330074 CCATACAGATTCACCGAAGACAAC 59.670 45.833 0.00 0.00 0.00 3.32
493 494 7.012704 CGAATGAAGACCAAATCCATACAGATT 59.987 37.037 0.00 0.00 38.11 2.40
494 495 6.484643 CGAATGAAGACCAAATCCATACAGAT 59.515 38.462 0.00 0.00 0.00 2.90
500 501 3.947834 GGACGAATGAAGACCAAATCCAT 59.052 43.478 0.00 0.00 0.00 3.41
514 515 3.153364 GCATGAATGCGGACGAATG 57.847 52.632 0.00 0.00 44.67 2.67
525 526 4.508551 TCCAACCTGTAGATGCATGAAT 57.491 40.909 2.46 0.00 0.00 2.57
526 527 3.998913 TCCAACCTGTAGATGCATGAA 57.001 42.857 2.46 0.00 0.00 2.57
535 536 8.765219 CGTATATCAAAAAGATCCAACCTGTAG 58.235 37.037 0.00 0.00 38.19 2.74
545 546 9.035607 TGAAGAGAAGCGTATATCAAAAAGATC 57.964 33.333 0.00 0.00 38.19 2.75
548 549 8.820933 TGATGAAGAGAAGCGTATATCAAAAAG 58.179 33.333 0.00 0.00 0.00 2.27
549 550 8.716646 TGATGAAGAGAAGCGTATATCAAAAA 57.283 30.769 0.00 0.00 0.00 1.94
553 554 5.465051 GCTGATGAAGAGAAGCGTATATCA 58.535 41.667 0.00 0.00 0.00 2.15
576 577 1.079819 ACCAGAGCATTGACCGTCG 60.080 57.895 0.00 0.00 0.00 5.12
577 578 1.639298 GCACCAGAGCATTGACCGTC 61.639 60.000 0.00 0.00 0.00 4.79
578 579 1.672356 GCACCAGAGCATTGACCGT 60.672 57.895 0.00 0.00 0.00 4.83
579 580 2.743752 CGCACCAGAGCATTGACCG 61.744 63.158 0.00 0.00 0.00 4.79
583 584 2.483745 CAGCGCACCAGAGCATTG 59.516 61.111 11.47 0.00 43.61 2.82
588 589 2.738213 AAAGGACCAGCGCACCAGAG 62.738 60.000 11.47 0.00 0.00 3.35
611 612 4.382754 GTCAAAAATTCGTCATGCCAAGTC 59.617 41.667 0.00 0.00 0.00 3.01
616 617 3.900941 ACAGTCAAAAATTCGTCATGCC 58.099 40.909 0.00 0.00 0.00 4.40
626 627 9.561069 ACTTCATTGTAGTAGACAGTCAAAAAT 57.439 29.630 2.66 0.00 39.88 1.82
630 631 7.042051 GCAAACTTCATTGTAGTAGACAGTCAA 60.042 37.037 2.66 0.00 39.88 3.18
647 648 2.368548 TCACTAGAGCAGGCAAACTTCA 59.631 45.455 0.00 0.00 0.00 3.02
648 649 2.999355 CTCACTAGAGCAGGCAAACTTC 59.001 50.000 0.00 0.00 34.61 3.01
676 679 1.424493 GAGCGAGCCAAAGACCATCG 61.424 60.000 0.00 0.00 36.51 3.84
677 680 0.391661 TGAGCGAGCCAAAGACCATC 60.392 55.000 0.00 0.00 0.00 3.51
679 682 0.603707 CTTGAGCGAGCCAAAGACCA 60.604 55.000 0.00 0.00 0.00 4.02
680 683 0.603975 ACTTGAGCGAGCCAAAGACC 60.604 55.000 12.43 0.00 0.00 3.85
682 685 1.230635 GCACTTGAGCGAGCCAAAGA 61.231 55.000 12.43 0.00 0.00 2.52
684 687 0.819259 AAGCACTTGAGCGAGCCAAA 60.819 50.000 0.00 0.00 40.15 3.28
685 688 1.227943 AAGCACTTGAGCGAGCCAA 60.228 52.632 0.00 0.00 40.15 4.52
690 693 2.135139 CAACTACAAGCACTTGAGCGA 58.865 47.619 16.95 0.00 42.93 4.93
694 697 1.864711 GCGACAACTACAAGCACTTGA 59.135 47.619 16.95 0.66 42.93 3.02
695 698 1.867233 AGCGACAACTACAAGCACTTG 59.133 47.619 8.82 8.82 45.58 3.16
737 751 5.874895 AGAGCACGGGAAGTAATAAAAAC 57.125 39.130 0.00 0.00 0.00 2.43
751 765 4.481930 TCAAACATTACAAAGAGCACGG 57.518 40.909 0.00 0.00 0.00 4.94
1152 1202 7.509141 TTGATTGATTCACTAGAAAACTGCA 57.491 32.000 0.00 0.00 37.29 4.41
1188 1238 5.893824 GGAAATCCAGGACCATGTAATTTCT 59.106 40.000 17.09 0.00 34.31 2.52
1205 1255 6.432472 GGACTGATCTTAATCATGGGAAATCC 59.568 42.308 0.00 0.00 41.05 3.01
1211 1263 5.557576 TCAGGACTGATCTTAATCATGGG 57.442 43.478 0.00 0.00 41.05 4.00
1319 1371 7.683437 AGTTCTTAAATTTCTTTACGGAGGG 57.317 36.000 0.00 0.00 0.00 4.30
1379 1431 6.235231 TCCAGGAGTACAAGCCTTAATAAG 57.765 41.667 0.00 0.00 30.41 1.73
1488 1540 2.159627 ACGGCTTTGCAATACTTCTTCG 59.840 45.455 0.00 0.00 0.00 3.79
1498 1550 1.066303 CCACAAGTTACGGCTTTGCAA 59.934 47.619 0.00 0.00 0.00 4.08
1554 1606 0.749049 CTCTGATGGCATCCGACAGA 59.251 55.000 23.92 18.30 36.54 3.41
1560 1612 1.153086 AACCGCTCTGATGGCATCC 60.153 57.895 23.92 8.10 0.00 3.51
1694 1749 5.385509 AGCACAACCGTTTTATAAAGCAT 57.614 34.783 11.90 0.00 0.00 3.79
1695 1750 4.839668 AGCACAACCGTTTTATAAAGCA 57.160 36.364 11.90 0.00 0.00 3.91
1708 1763 6.940298 TCCTTATGCCTTTATATAGCACAACC 59.060 38.462 0.00 0.00 39.77 3.77
1712 1767 6.472887 TGGTCCTTATGCCTTTATATAGCAC 58.527 40.000 0.00 0.00 39.77 4.40
1771 1834 1.025113 GGCGAAGGGAAGTAACTGCC 61.025 60.000 0.00 0.00 0.00 4.85
1819 1886 8.110002 CACAGTTCACAATAAAAGCAAAAAGAC 58.890 33.333 0.00 0.00 0.00 3.01
1820 1887 7.277539 CCACAGTTCACAATAAAAGCAAAAAGA 59.722 33.333 0.00 0.00 0.00 2.52
1832 1899 6.298441 TCATCATCTCCACAGTTCACAATA 57.702 37.500 0.00 0.00 0.00 1.90
1897 1965 1.375098 GCCTCTTCAGCCTGCACATC 61.375 60.000 0.00 0.00 0.00 3.06
2088 2156 0.397941 CCTCTGAAGCAACACCCTCA 59.602 55.000 0.00 0.00 0.00 3.86
2097 2165 3.753272 GCAATCAACTAACCTCTGAAGCA 59.247 43.478 0.00 0.00 0.00 3.91
2122 2190 9.970395 GATCAATATTTGACTTATTCAATGCCA 57.030 29.630 0.00 0.00 43.99 4.92
2170 2238 3.696051 CAGTGCTATATTGGTGTTGCCTT 59.304 43.478 0.00 0.00 38.35 4.35
2253 2327 9.863845 TGTATCATCGTTTGTTGTCTAAATAGA 57.136 29.630 0.00 0.00 0.00 1.98
2270 2344 6.513393 GCTCCACCCTTTTTAATGTATCATCG 60.513 42.308 0.00 0.00 0.00 3.84
2272 2346 5.299279 CGCTCCACCCTTTTTAATGTATCAT 59.701 40.000 0.00 0.00 0.00 2.45
2279 2353 5.538849 TTTTTCGCTCCACCCTTTTTAAT 57.461 34.783 0.00 0.00 0.00 1.40
2302 2376 5.954150 AGCAATGACCATCCTTTAGATTGTT 59.046 36.000 0.00 0.00 31.19 2.83
2303 2377 5.513233 AGCAATGACCATCCTTTAGATTGT 58.487 37.500 0.00 0.00 33.65 2.71
2319 2393 8.125978 AGATTTGGAAGAAATGTTAGCAATGA 57.874 30.769 0.00 0.00 0.00 2.57
2391 2465 3.140325 AGTTCGGACAAACATGGACAT 57.860 42.857 0.00 0.00 0.00 3.06
2403 2477 4.451629 TGATCAAAGGACTAGTTCGGAC 57.548 45.455 0.00 0.00 0.00 4.79
2423 2498 7.882271 TCAAAAAGGTGGGGATGATTAAATTTG 59.118 33.333 0.00 0.00 0.00 2.32
2424 2499 7.983363 TCAAAAAGGTGGGGATGATTAAATTT 58.017 30.769 0.00 0.00 0.00 1.82
2425 2500 7.566658 TCAAAAAGGTGGGGATGATTAAATT 57.433 32.000 0.00 0.00 0.00 1.82
2426 2501 7.566658 TTCAAAAAGGTGGGGATGATTAAAT 57.433 32.000 0.00 0.00 0.00 1.40
2427 2502 7.566658 ATTCAAAAAGGTGGGGATGATTAAA 57.433 32.000 0.00 0.00 0.00 1.52
2428 2503 7.457535 AGAATTCAAAAAGGTGGGGATGATTAA 59.542 33.333 8.44 0.00 0.00 1.40
2429 2504 6.959366 AGAATTCAAAAAGGTGGGGATGATTA 59.041 34.615 8.44 0.00 0.00 1.75
2430 2505 5.786975 AGAATTCAAAAAGGTGGGGATGATT 59.213 36.000 8.44 0.00 0.00 2.57
2431 2506 5.344566 AGAATTCAAAAAGGTGGGGATGAT 58.655 37.500 8.44 0.00 0.00 2.45
2432 2507 4.750941 AGAATTCAAAAAGGTGGGGATGA 58.249 39.130 8.44 0.00 0.00 2.92
2443 2518 9.165035 ACTGCAATCAGAAAAAGAATTCAAAAA 57.835 25.926 8.44 0.00 42.95 1.94
2451 2526 6.690530 CCCATAACTGCAATCAGAAAAAGAA 58.309 36.000 0.00 0.00 42.95 2.52
2469 2544 4.464008 CCAAATAGCTTCTCTGCCCATAA 58.536 43.478 0.00 0.00 0.00 1.90
2491 2566 2.223249 CGTGCCCAACTTGTATACATGC 60.223 50.000 16.47 9.03 0.00 4.06
2513 2588 2.616842 TCCTTCTTTGAAACGTTGCCTC 59.383 45.455 0.00 0.00 0.00 4.70
2520 2595 4.628074 TCTACCAGTCCTTCTTTGAAACG 58.372 43.478 0.00 0.00 0.00 3.60
2524 2599 5.394738 TCTTCTCTACCAGTCCTTCTTTGA 58.605 41.667 0.00 0.00 0.00 2.69
2557 2632 5.172687 TGCAAACTGGATATGACCACTTA 57.827 39.130 0.00 0.00 35.91 2.24
2569 2644 1.153066 TCCAACGCTGCAAACTGGA 60.153 52.632 0.00 2.73 33.77 3.86
2582 2657 6.820656 ACATGTACTCTGATTCAATCTCCAAC 59.179 38.462 0.00 0.00 0.00 3.77
2583 2658 6.950842 ACATGTACTCTGATTCAATCTCCAA 58.049 36.000 0.00 0.00 0.00 3.53
2679 2754 9.579932 AATAGGAATAGAAAATGGAATCACCTC 57.420 33.333 0.00 0.00 39.86 3.85
2722 2797 6.110033 ACCTTTGTGTTTAATTGTTTGGACC 58.890 36.000 0.00 0.00 0.00 4.46
2756 2831 6.145209 GGTTCTGAAAGTACGACTAAGGTTTC 59.855 42.308 0.00 0.00 34.76 2.78
2824 2899 1.016627 TGCAAGTTGCTCACTGACAC 58.983 50.000 27.17 0.00 45.31 3.67
2852 2927 1.340889 CTCAGCATCTAGGAGGTGCTC 59.659 57.143 11.27 0.00 45.42 4.26
2855 2930 5.127845 TCTTTTACTCAGCATCTAGGAGGTG 59.872 44.000 7.84 7.84 32.98 4.00
2859 2934 8.768501 TTCTATCTTTTACTCAGCATCTAGGA 57.231 34.615 0.00 0.00 0.00 2.94
3036 3111 5.555017 AGACTTCACAGAATGCATACTGTT 58.445 37.500 0.00 0.00 43.52 3.16
3040 3115 4.569966 CCAGAGACTTCACAGAATGCATAC 59.430 45.833 0.00 0.00 42.53 2.39
3071 3165 7.012799 GGATTTGAACTGGGAAGACATAAGATC 59.987 40.741 0.00 0.00 0.00 2.75
3074 3168 6.183347 AGGATTTGAACTGGGAAGACATAAG 58.817 40.000 0.00 0.00 0.00 1.73
3078 3172 4.453480 AAGGATTTGAACTGGGAAGACA 57.547 40.909 0.00 0.00 0.00 3.41
3083 3177 6.745794 AAATGAAAAGGATTTGAACTGGGA 57.254 33.333 0.00 0.00 39.02 4.37
3212 3308 6.209986 TCAAGCATCACAAGGAAAAGATCATT 59.790 34.615 0.00 0.00 30.75 2.57
3296 3392 5.248705 AGCTTTGGTAGGTTTAGAGTTAGCT 59.751 40.000 0.00 0.00 0.00 3.32
3454 3550 0.861837 GTTGAACTCTCACAGTGGCG 59.138 55.000 0.00 0.00 34.56 5.69
3481 3577 2.338500 CTTTCGGCAGTAACTCCACTC 58.662 52.381 0.00 0.00 0.00 3.51
3685 3781 3.543070 GCTTGTTTCTCGATCATCTTCGC 60.543 47.826 0.00 0.00 38.97 4.70
3804 3900 1.601419 CGCCTTCCAGGACCGAGTTA 61.601 60.000 0.00 0.00 37.67 2.24
3939 4035 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
4013 8389 6.040209 TGATGAATTTTTGCAGGCACTTAT 57.960 33.333 0.00 0.00 34.60 1.73
4071 8447 6.930667 AAAGCATTTTGAAGCACTGAAATT 57.069 29.167 0.00 0.00 31.62 1.82
4302 8679 8.347004 TCTGTATCAGCAAAAATGGATTTACA 57.653 30.769 0.00 0.00 0.00 2.41
4307 8684 8.954350 GCTATATCTGTATCAGCAAAAATGGAT 58.046 33.333 0.00 0.00 32.46 3.41
4348 8725 3.244422 TGTGACCCATGTTACAGAGGTTC 60.244 47.826 9.93 4.32 36.20 3.62
4420 8797 3.005578 ACTGTCGGAGTAAGAGTTTGGTC 59.994 47.826 0.00 0.00 30.86 4.02
4425 8802 1.811359 CGGACTGTCGGAGTAAGAGTT 59.189 52.381 9.52 0.00 33.83 3.01
4426 8803 1.002888 TCGGACTGTCGGAGTAAGAGT 59.997 52.381 13.27 0.00 33.83 3.24
4428 8805 1.735386 CTCGGACTGTCGGAGTAAGA 58.265 55.000 27.62 8.30 38.54 2.10
4441 8818 1.202154 CCAGTACATGACGACTCGGAC 60.202 57.143 0.00 0.00 0.00 4.79
4447 8824 2.159240 TCTGCATCCAGTACATGACGAC 60.159 50.000 0.00 0.00 40.09 4.34
4450 8827 2.547211 GCATCTGCATCCAGTACATGAC 59.453 50.000 0.00 0.00 40.09 3.06
4537 8914 2.595463 GGCTGCAGGACAAGCACA 60.595 61.111 17.12 0.00 37.02 4.57
4661 9038 1.442526 CGTACATAGAGGCCGACGGT 61.443 60.000 16.73 0.00 0.00 4.83
4784 9161 4.164664 ATGATGTGCAACGCCGCG 62.165 61.111 12.14 12.14 42.39 6.46
4787 9164 4.463597 CACATGATGTGCAACGCC 57.536 55.556 13.15 0.00 41.89 5.68
4815 9192 4.415332 GTTCAGGAGCGTCGGCGA 62.415 66.667 16.53 4.99 46.35 5.54
4844 9221 1.299541 CCATGTCGGTGATGGTTAGC 58.700 55.000 0.00 0.00 36.38 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.