Multiple sequence alignment - TraesCS1D01G237400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G237400 chr1D 100.000 5089 0 0 1 5089 326588575 326583487 0.000000e+00 9398.0
1 TraesCS1D01G237400 chr1A 95.345 4640 135 34 260 4877 412222193 412226773 0.000000e+00 7297.0
2 TraesCS1D01G237400 chr1A 96.250 80 3 0 2 81 558890274 558890353 1.150000e-26 132.0
3 TraesCS1D01G237400 chr1B 94.743 2701 88 19 457 3139 440505556 440502892 0.000000e+00 4152.0
4 TraesCS1D01G237400 chr1B 95.033 1369 62 5 3391 4756 440502220 440500855 0.000000e+00 2146.0
5 TraesCS1D01G237400 chr1B 93.450 458 20 5 4 459 440518405 440517956 0.000000e+00 671.0
6 TraesCS1D01G237400 chr5D 89.356 357 27 7 4401 4756 452679873 452680219 6.050000e-119 438.0
7 TraesCS1D01G237400 chr5D 96.250 80 3 0 2 81 534086278 534086199 1.150000e-26 132.0
8 TraesCS1D01G237400 chr5B 89.328 253 21 5 4401 4648 553181398 553181649 3.830000e-81 313.0
9 TraesCS1D01G237400 chr5A 86.335 161 19 1 4929 5089 32898922 32899079 6.770000e-39 172.0
10 TraesCS1D01G237400 chr6A 85.517 145 14 7 2 139 46548998 46548854 1.480000e-30 145.0
11 TraesCS1D01G237400 chr7B 85.612 139 14 6 1 138 634519842 634519975 1.910000e-29 141.0
12 TraesCS1D01G237400 chr3B 84.138 145 16 7 1 139 173327515 173327658 3.200000e-27 134.0
13 TraesCS1D01G237400 chr4B 96.250 80 3 0 2 81 109316665 109316586 1.150000e-26 132.0
14 TraesCS1D01G237400 chr7D 84.138 145 12 6 2 139 59108560 59108420 4.130000e-26 130.0
15 TraesCS1D01G237400 chr2D 83.571 140 14 8 1 140 78509527 78509657 6.920000e-24 122.0
16 TraesCS1D01G237400 chr3A 82.394 142 17 7 3 139 717823898 717824036 3.220000e-22 117.0
17 TraesCS1D01G237400 chr6D 86.916 107 7 5 1 106 420237861 420237961 4.160000e-21 113.0
18 TraesCS1D01G237400 chr4D 100.000 36 0 0 4878 4913 138688912 138688947 3.290000e-07 67.6
19 TraesCS1D01G237400 chr4A 100.000 36 0 0 4878 4913 415887678 415887643 3.290000e-07 67.6
20 TraesCS1D01G237400 chr4A 97.222 36 1 0 4878 4913 415886974 415886939 1.530000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G237400 chr1D 326583487 326588575 5088 True 9398 9398 100.000 1 5089 1 chr1D.!!$R1 5088
1 TraesCS1D01G237400 chr1A 412222193 412226773 4580 False 7297 7297 95.345 260 4877 1 chr1A.!!$F1 4617
2 TraesCS1D01G237400 chr1B 440500855 440505556 4701 True 3149 4152 94.888 457 4756 2 chr1B.!!$R2 4299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.0 0.00 0.0 37.81 1.40 F
126 127 0.179171 GAGCGCTTGCGTCTGTACTA 60.179 55.0 13.26 0.0 45.69 1.82 F
1972 2007 0.392863 TTGAGTGATGTGCCCGATGG 60.393 55.0 0.00 0.0 0.00 3.51 F
3301 3831 0.250901 ATGTGTCCACTGAGGGTTGC 60.251 55.0 0.00 0.0 38.24 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2039 2.353269 CCACGTAAGAAATATGGCGCAA 59.647 45.455 10.83 0.00 43.62 4.85 R
2045 2080 7.385478 TGCTAGTTGAAATATGAACGTGTTGTA 59.615 33.333 0.00 0.00 0.00 2.41 R
3898 4436 0.596600 GCAGCCATCGATTGCAATGG 60.597 55.000 22.04 16.42 44.42 3.16 R
4902 5443 0.107945 GTCCTTCTCAGCAAGCCGAT 60.108 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.995199 AGTGACTTCGCAAATCTCAAGA 58.005 40.909 0.00 0.00 0.00 3.02
22 23 4.573900 AGTGACTTCGCAAATCTCAAGAT 58.426 39.130 0.00 0.00 36.07 2.40
23 24 4.391216 AGTGACTTCGCAAATCTCAAGATG 59.609 41.667 0.00 0.00 34.49 2.90
24 25 4.389992 GTGACTTCGCAAATCTCAAGATGA 59.610 41.667 0.00 0.00 34.49 2.92
25 26 5.064452 GTGACTTCGCAAATCTCAAGATGAT 59.936 40.000 0.00 0.00 34.49 2.45
26 27 6.256539 GTGACTTCGCAAATCTCAAGATGATA 59.743 38.462 0.00 0.00 34.49 2.15
27 28 6.988580 TGACTTCGCAAATCTCAAGATGATAT 59.011 34.615 0.00 0.00 34.49 1.63
28 29 7.042254 TGACTTCGCAAATCTCAAGATGATATG 60.042 37.037 0.00 0.00 34.49 1.78
29 30 5.602458 TCGCAAATCTCAAGATGATATGC 57.398 39.130 0.00 2.65 34.49 3.14
30 31 4.151157 TCGCAAATCTCAAGATGATATGCG 59.849 41.667 22.82 22.82 45.10 4.73
31 32 4.668431 CGCAAATCTCAAGATGATATGCGG 60.668 45.833 21.95 11.86 42.95 5.69
32 33 4.379186 GCAAATCTCAAGATGATATGCGGG 60.379 45.833 0.00 0.00 34.49 6.13
33 34 2.462456 TCTCAAGATGATATGCGGGC 57.538 50.000 0.00 0.00 0.00 6.13
34 35 1.973515 TCTCAAGATGATATGCGGGCT 59.026 47.619 0.00 0.00 0.00 5.19
35 36 2.028658 TCTCAAGATGATATGCGGGCTC 60.029 50.000 0.00 0.00 0.00 4.70
36 37 1.693606 TCAAGATGATATGCGGGCTCA 59.306 47.619 0.00 0.00 0.00 4.26
37 38 2.074576 CAAGATGATATGCGGGCTCAG 58.925 52.381 0.00 0.00 0.00 3.35
38 39 1.346062 AGATGATATGCGGGCTCAGT 58.654 50.000 0.00 0.00 0.00 3.41
39 40 1.274728 AGATGATATGCGGGCTCAGTC 59.725 52.381 0.00 0.00 0.00 3.51
40 41 1.274728 GATGATATGCGGGCTCAGTCT 59.725 52.381 0.00 0.00 0.00 3.24
41 42 0.676184 TGATATGCGGGCTCAGTCTC 59.324 55.000 0.00 0.00 0.00 3.36
42 43 0.965439 GATATGCGGGCTCAGTCTCT 59.035 55.000 0.00 0.00 0.00 3.10
43 44 0.965439 ATATGCGGGCTCAGTCTCTC 59.035 55.000 0.00 0.00 0.00 3.20
44 45 1.448119 TATGCGGGCTCAGTCTCTCG 61.448 60.000 0.00 0.00 0.00 4.04
45 46 3.134792 GCGGGCTCAGTCTCTCGA 61.135 66.667 0.00 0.00 0.00 4.04
46 47 2.701780 GCGGGCTCAGTCTCTCGAA 61.702 63.158 0.00 0.00 0.00 3.71
47 48 1.431440 CGGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
48 49 1.813192 GGGCTCAGTCTCTCGAAGG 59.187 63.158 0.00 0.00 0.00 3.46
49 50 0.968393 GGGCTCAGTCTCTCGAAGGT 60.968 60.000 0.00 0.00 0.00 3.50
50 51 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
51 52 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
52 53 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
53 54 1.132262 CTCAGTCTCTCGAAGGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
54 55 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
55 56 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
56 57 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
57 58 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
58 59 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
59 60 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
60 61 0.390860 CTCGAAGGTGCTCATAGGGG 59.609 60.000 0.00 0.00 0.00 4.79
61 62 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
62 63 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
63 64 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
64 65 2.679082 GAAGGTGCTCATAGGGGTAGA 58.321 52.381 0.00 0.00 0.00 2.59
65 66 2.390225 AGGTGCTCATAGGGGTAGAG 57.610 55.000 0.00 0.00 0.00 2.43
66 67 1.576272 AGGTGCTCATAGGGGTAGAGT 59.424 52.381 0.00 0.00 0.00 3.24
67 68 1.689273 GGTGCTCATAGGGGTAGAGTG 59.311 57.143 0.00 0.00 0.00 3.51
68 69 2.389715 GTGCTCATAGGGGTAGAGTGT 58.610 52.381 0.00 0.00 0.00 3.55
69 70 2.101582 GTGCTCATAGGGGTAGAGTGTG 59.898 54.545 0.00 0.00 0.00 3.82
70 71 1.069358 GCTCATAGGGGTAGAGTGTGC 59.931 57.143 0.00 0.00 0.00 4.57
71 72 1.338337 CTCATAGGGGTAGAGTGTGCG 59.662 57.143 0.00 0.00 0.00 5.34
72 73 1.112113 CATAGGGGTAGAGTGTGCGT 58.888 55.000 0.00 0.00 0.00 5.24
73 74 1.112113 ATAGGGGTAGAGTGTGCGTG 58.888 55.000 0.00 0.00 0.00 5.34
74 75 0.251474 TAGGGGTAGAGTGTGCGTGT 60.251 55.000 0.00 0.00 0.00 4.49
75 76 1.374252 GGGGTAGAGTGTGCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
76 77 1.366366 GGGTAGAGTGTGCGTGTGT 59.634 57.895 0.00 0.00 0.00 3.72
77 78 0.944311 GGGTAGAGTGTGCGTGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
78 79 1.557443 GGTAGAGTGTGCGTGTGTGC 61.557 60.000 0.00 0.00 0.00 4.57
79 80 1.660264 TAGAGTGTGCGTGTGTGCG 60.660 57.895 0.00 0.00 37.81 5.34
80 81 2.344521 TAGAGTGTGCGTGTGTGCGT 62.345 55.000 0.00 0.00 37.81 5.24
81 82 3.491508 GAGTGTGCGTGTGTGCGTG 62.492 63.158 0.00 0.00 37.81 5.34
82 83 3.860125 GTGTGCGTGTGTGCGTGT 61.860 61.111 0.00 0.00 37.81 4.49
83 84 3.858989 TGTGCGTGTGTGCGTGTG 61.859 61.111 0.00 0.00 37.81 3.82
84 85 3.860125 GTGCGTGTGTGCGTGTGT 61.860 61.111 0.00 0.00 37.81 3.72
85 86 3.858989 TGCGTGTGTGCGTGTGTG 61.859 61.111 0.00 0.00 37.81 3.82
87 88 4.918060 CGTGTGTGCGTGTGTGCG 62.918 66.667 0.00 0.00 37.81 5.34
88 89 3.860125 GTGTGTGCGTGTGTGCGT 61.860 61.111 0.00 0.00 37.81 5.24
89 90 3.121676 TGTGTGCGTGTGTGCGTT 61.122 55.556 0.00 0.00 37.81 4.84
90 91 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
91 92 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
92 93 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
93 94 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
94 95 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
95 96 1.458064 GTGCGTGTGTGCGTTTATAGT 59.542 47.619 0.00 0.00 37.81 2.12
96 97 1.457683 TGCGTGTGTGCGTTTATAGTG 59.542 47.619 0.00 0.00 37.81 2.74
97 98 1.201877 GCGTGTGTGCGTTTATAGTGG 60.202 52.381 0.00 0.00 0.00 4.00
98 99 2.063266 CGTGTGTGCGTTTATAGTGGT 58.937 47.619 0.00 0.00 0.00 4.16
99 100 2.159894 CGTGTGTGCGTTTATAGTGGTG 60.160 50.000 0.00 0.00 0.00 4.17
100 101 3.061322 GTGTGTGCGTTTATAGTGGTGA 58.939 45.455 0.00 0.00 0.00 4.02
101 102 3.122948 GTGTGTGCGTTTATAGTGGTGAG 59.877 47.826 0.00 0.00 0.00 3.51
102 103 3.243941 TGTGTGCGTTTATAGTGGTGAGT 60.244 43.478 0.00 0.00 0.00 3.41
103 104 3.122948 GTGTGCGTTTATAGTGGTGAGTG 59.877 47.826 0.00 0.00 0.00 3.51
104 105 3.243941 TGTGCGTTTATAGTGGTGAGTGT 60.244 43.478 0.00 0.00 0.00 3.55
105 106 4.022155 TGTGCGTTTATAGTGGTGAGTGTA 60.022 41.667 0.00 0.00 0.00 2.90
106 107 4.325472 GTGCGTTTATAGTGGTGAGTGTAC 59.675 45.833 0.00 0.00 0.00 2.90
107 108 3.545078 GCGTTTATAGTGGTGAGTGTACG 59.455 47.826 0.00 0.00 0.00 3.67
108 109 4.672542 GCGTTTATAGTGGTGAGTGTACGA 60.673 45.833 0.00 0.00 0.00 3.43
109 110 5.026462 CGTTTATAGTGGTGAGTGTACGAG 58.974 45.833 0.00 0.00 0.00 4.18
110 111 4.627611 TTATAGTGGTGAGTGTACGAGC 57.372 45.455 0.00 0.00 0.00 5.03
111 112 0.800631 TAGTGGTGAGTGTACGAGCG 59.199 55.000 0.00 0.00 0.00 5.03
112 113 2.087009 GTGGTGAGTGTACGAGCGC 61.087 63.158 0.00 0.00 0.00 5.92
113 114 2.265904 TGGTGAGTGTACGAGCGCT 61.266 57.895 11.27 11.27 0.00 5.92
114 115 1.080705 GGTGAGTGTACGAGCGCTT 60.081 57.895 13.26 0.00 0.00 4.68
115 116 1.344942 GGTGAGTGTACGAGCGCTTG 61.345 60.000 23.34 23.34 0.00 4.01
116 117 1.733041 TGAGTGTACGAGCGCTTGC 60.733 57.895 24.80 9.90 39.58 4.01
117 118 2.778997 GAGTGTACGAGCGCTTGCG 61.779 63.158 24.80 20.18 45.69 4.85
118 119 3.103911 GTGTACGAGCGCTTGCGT 61.104 61.111 24.68 24.68 45.69 5.24
119 120 2.803670 TGTACGAGCGCTTGCGTC 60.804 61.111 24.96 17.10 45.69 5.19
120 121 2.504244 GTACGAGCGCTTGCGTCT 60.504 61.111 24.96 8.94 45.69 4.18
121 122 2.504026 TACGAGCGCTTGCGTCTG 60.504 61.111 24.96 6.42 45.69 3.51
122 123 3.263503 TACGAGCGCTTGCGTCTGT 62.264 57.895 24.96 7.85 45.69 3.41
123 124 1.914531 TACGAGCGCTTGCGTCTGTA 61.915 55.000 24.96 7.49 45.69 2.74
124 125 2.778997 CGAGCGCTTGCGTCTGTAC 61.779 63.158 13.26 0.00 45.69 2.90
125 126 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
126 127 0.179171 GAGCGCTTGCGTCTGTACTA 60.179 55.000 13.26 0.00 45.69 1.82
127 128 0.456221 AGCGCTTGCGTCTGTACTAT 59.544 50.000 16.38 0.00 45.69 2.12
128 129 0.572590 GCGCTTGCGTCTGTACTATG 59.427 55.000 16.38 0.00 0.00 2.23
129 130 1.909376 CGCTTGCGTCTGTACTATGT 58.091 50.000 6.86 0.00 0.00 2.29
130 131 2.259618 CGCTTGCGTCTGTACTATGTT 58.740 47.619 6.86 0.00 0.00 2.71
131 132 3.431856 CGCTTGCGTCTGTACTATGTTA 58.568 45.455 6.86 0.00 0.00 2.41
132 133 3.855379 CGCTTGCGTCTGTACTATGTTAA 59.145 43.478 6.86 0.00 0.00 2.01
133 134 4.325204 CGCTTGCGTCTGTACTATGTTAAA 59.675 41.667 6.86 0.00 0.00 1.52
134 135 5.164031 CGCTTGCGTCTGTACTATGTTAAAA 60.164 40.000 6.86 0.00 0.00 1.52
135 136 6.595794 GCTTGCGTCTGTACTATGTTAAAAA 58.404 36.000 0.00 0.00 0.00 1.94
158 159 7.833285 AAAAATCTTAACTTGGCTAACTGGA 57.167 32.000 0.00 0.00 0.00 3.86
159 160 6.819397 AAATCTTAACTTGGCTAACTGGAC 57.181 37.500 0.00 0.00 0.00 4.02
160 161 4.967084 TCTTAACTTGGCTAACTGGACA 57.033 40.909 0.00 0.00 0.00 4.02
161 162 5.298989 TCTTAACTTGGCTAACTGGACAA 57.701 39.130 0.00 0.00 32.77 3.18
164 165 2.859165 CTTGGCTAACTGGACAAGGA 57.141 50.000 0.82 0.00 45.67 3.36
165 166 3.356529 CTTGGCTAACTGGACAAGGAT 57.643 47.619 0.82 0.00 45.67 3.24
166 167 2.787473 TGGCTAACTGGACAAGGATG 57.213 50.000 0.00 0.00 0.00 3.51
167 168 2.265367 TGGCTAACTGGACAAGGATGA 58.735 47.619 0.00 0.00 0.00 2.92
168 169 2.846206 TGGCTAACTGGACAAGGATGAT 59.154 45.455 0.00 0.00 0.00 2.45
169 170 3.118261 TGGCTAACTGGACAAGGATGATC 60.118 47.826 0.00 0.00 0.00 2.92
170 171 3.118261 GGCTAACTGGACAAGGATGATCA 60.118 47.826 0.00 0.00 0.00 2.92
171 172 3.873952 GCTAACTGGACAAGGATGATCAC 59.126 47.826 0.00 0.00 0.00 3.06
172 173 4.383552 GCTAACTGGACAAGGATGATCACT 60.384 45.833 0.00 0.00 0.00 3.41
173 174 3.623906 ACTGGACAAGGATGATCACTG 57.376 47.619 0.00 0.00 0.00 3.66
174 175 2.286872 CTGGACAAGGATGATCACTGC 58.713 52.381 0.00 0.00 0.00 4.40
175 176 1.065199 TGGACAAGGATGATCACTGCC 60.065 52.381 0.00 0.00 0.00 4.85
176 177 1.065199 GGACAAGGATGATCACTGCCA 60.065 52.381 0.00 0.00 0.00 4.92
177 178 2.422519 GGACAAGGATGATCACTGCCAT 60.423 50.000 0.00 0.00 0.00 4.40
178 179 2.617308 GACAAGGATGATCACTGCCATG 59.383 50.000 0.00 6.18 0.00 3.66
179 180 2.240414 ACAAGGATGATCACTGCCATGA 59.760 45.455 17.89 0.00 0.00 3.07
180 181 3.284617 CAAGGATGATCACTGCCATGAA 58.715 45.455 0.00 0.00 30.82 2.57
181 182 3.657398 AGGATGATCACTGCCATGAAA 57.343 42.857 0.00 0.00 30.82 2.69
182 183 3.972133 AGGATGATCACTGCCATGAAAA 58.028 40.909 0.00 0.00 30.82 2.29
183 184 3.952323 AGGATGATCACTGCCATGAAAAG 59.048 43.478 0.00 0.00 30.82 2.27
184 185 3.949754 GGATGATCACTGCCATGAAAAGA 59.050 43.478 0.00 0.00 30.82 2.52
185 186 4.201990 GGATGATCACTGCCATGAAAAGAC 60.202 45.833 0.00 0.00 30.82 3.01
186 187 4.025040 TGATCACTGCCATGAAAAGACT 57.975 40.909 0.00 0.00 30.82 3.24
187 188 5.164620 TGATCACTGCCATGAAAAGACTA 57.835 39.130 0.00 0.00 30.82 2.59
188 189 5.181009 TGATCACTGCCATGAAAAGACTAG 58.819 41.667 0.00 0.00 30.82 2.57
189 190 3.942829 TCACTGCCATGAAAAGACTAGG 58.057 45.455 0.00 0.00 0.00 3.02
190 191 2.421424 CACTGCCATGAAAAGACTAGGC 59.579 50.000 0.00 0.00 42.32 3.93
193 194 3.772060 GCCATGAAAAGACTAGGCAAG 57.228 47.619 0.00 0.00 41.63 4.01
194 195 2.424956 GCCATGAAAAGACTAGGCAAGG 59.575 50.000 0.00 0.00 41.63 3.61
195 196 3.873801 GCCATGAAAAGACTAGGCAAGGA 60.874 47.826 0.00 0.00 41.63 3.36
196 197 4.530875 CCATGAAAAGACTAGGCAAGGAT 58.469 43.478 0.00 0.00 0.00 3.24
197 198 4.337555 CCATGAAAAGACTAGGCAAGGATG 59.662 45.833 0.00 0.00 0.00 3.51
198 199 3.955471 TGAAAAGACTAGGCAAGGATGG 58.045 45.455 0.00 0.00 0.00 3.51
199 200 3.330701 TGAAAAGACTAGGCAAGGATGGT 59.669 43.478 0.00 0.00 0.00 3.55
200 201 4.202567 TGAAAAGACTAGGCAAGGATGGTT 60.203 41.667 0.00 0.00 0.00 3.67
201 202 3.636153 AAGACTAGGCAAGGATGGTTC 57.364 47.619 0.00 0.00 0.00 3.62
202 203 2.839228 AGACTAGGCAAGGATGGTTCT 58.161 47.619 0.00 0.00 0.00 3.01
203 204 3.185455 AGACTAGGCAAGGATGGTTCTT 58.815 45.455 0.00 0.00 0.00 2.52
204 205 3.589288 AGACTAGGCAAGGATGGTTCTTT 59.411 43.478 0.00 0.00 0.00 2.52
205 206 4.043435 AGACTAGGCAAGGATGGTTCTTTT 59.957 41.667 0.00 0.00 0.00 2.27
206 207 4.082125 ACTAGGCAAGGATGGTTCTTTTG 58.918 43.478 0.00 0.00 0.00 2.44
207 208 3.243359 AGGCAAGGATGGTTCTTTTGA 57.757 42.857 0.00 0.00 0.00 2.69
208 209 3.575805 AGGCAAGGATGGTTCTTTTGAA 58.424 40.909 0.00 0.00 35.84 2.69
209 210 3.966665 AGGCAAGGATGGTTCTTTTGAAA 59.033 39.130 0.00 0.00 40.53 2.69
210 211 4.408596 AGGCAAGGATGGTTCTTTTGAAAA 59.591 37.500 0.00 0.00 40.53 2.29
211 212 5.104569 AGGCAAGGATGGTTCTTTTGAAAAA 60.105 36.000 0.00 0.00 40.53 1.94
234 235 6.796785 AAAATGTGGGGATAGAAAAGGATG 57.203 37.500 0.00 0.00 0.00 3.51
235 236 5.732331 AATGTGGGGATAGAAAAGGATGA 57.268 39.130 0.00 0.00 0.00 2.92
236 237 4.503714 TGTGGGGATAGAAAAGGATGAC 57.496 45.455 0.00 0.00 0.00 3.06
237 238 3.202151 TGTGGGGATAGAAAAGGATGACC 59.798 47.826 0.00 0.00 0.00 4.02
254 255 8.877864 AGGATGACCTCTCAAGTCTTATATAG 57.122 38.462 0.00 0.00 44.13 1.31
255 256 8.674173 AGGATGACCTCTCAAGTCTTATATAGA 58.326 37.037 0.00 0.00 44.13 1.98
256 257 9.303116 GGATGACCTCTCAAGTCTTATATAGAA 57.697 37.037 0.00 0.00 33.81 2.10
325 326 6.367969 AGGCGTGTGAGTAGTAATTGTTAAAG 59.632 38.462 0.00 0.00 0.00 1.85
470 473 8.512966 TTGGGATCGACATCATTAATTGTTAA 57.487 30.769 0.00 0.00 0.00 2.01
662 665 3.125829 CAGAGACACAATTCATTGGTCGG 59.874 47.826 4.58 2.21 41.96 4.79
714 717 5.822519 TGATTTATGGAAGACGAAGATTGGG 59.177 40.000 0.00 0.00 0.00 4.12
779 782 4.137543 GCCAATTCCTCATAAATCCTCGT 58.862 43.478 0.00 0.00 0.00 4.18
806 810 4.706962 CCTTGCTTTGCCTATTTAGTCCTT 59.293 41.667 0.00 0.00 0.00 3.36
809 813 3.443681 GCTTTGCCTATTTAGTCCTTGCA 59.556 43.478 0.00 0.00 0.00 4.08
974 990 2.128035 CGATTGATCGGTAAGTGAGGC 58.872 52.381 5.51 0.00 45.93 4.70
1302 1333 1.344953 ACATGCCGATGCCCTTCCTA 61.345 55.000 0.00 0.00 36.33 2.94
1323 1354 6.156429 TCCTACTCCTATTTGTTCCTTCTTCC 59.844 42.308 0.00 0.00 0.00 3.46
1395 1427 4.836125 ATCGTGATTTGCATAATGGTCC 57.164 40.909 0.00 0.00 0.00 4.46
1410 1442 7.417797 GCATAATGGTCCTTTTGTCCATAATGT 60.418 37.037 0.00 0.00 40.52 2.71
1453 1485 2.618241 TGCAACTGGCTGACAAGTTTAG 59.382 45.455 0.00 0.00 45.15 1.85
1454 1486 2.030805 GCAACTGGCTGACAAGTTTAGG 60.031 50.000 0.00 0.00 40.25 2.69
1484 1516 4.039488 ACCCTGTCGTACAATTGTCTTACA 59.961 41.667 15.85 15.37 0.00 2.41
1972 2007 0.392863 TTGAGTGATGTGCCCGATGG 60.393 55.000 0.00 0.00 0.00 3.51
2004 2039 8.969260 TTGAGCTGATGTTAGTATCATTCATT 57.031 30.769 0.00 0.00 36.55 2.57
2036 2071 1.958579 TCTTACGTGGTGCACTAGTGT 59.041 47.619 23.44 14.39 31.34 3.55
2045 2080 3.257375 TGGTGCACTAGTGTTAGACGATT 59.743 43.478 23.44 0.00 0.00 3.34
2112 2147 6.429791 TGTGTTGTCTCGAGAAATTTGAAA 57.570 33.333 18.55 0.00 0.00 2.69
2207 2247 8.807118 TGTTTGGCAGGTTTATTATTGTGAATA 58.193 29.630 0.00 0.00 0.00 1.75
2451 2491 7.723616 TGCATTGGTATGTTGGCTTATAAGTAT 59.276 33.333 13.91 4.53 34.12 2.12
2724 2764 9.744468 GTCACTTATTTATTTTGTGTGGAACTT 57.256 29.630 0.00 0.00 38.04 2.66
2755 2795 6.552859 TTTTGCTGTAGTTGATCGATTTCA 57.447 33.333 0.00 0.00 0.00 2.69
2777 2817 6.660722 TCATTTTGAAATTTCATTGCTGCAC 58.339 32.000 21.10 0.00 37.00 4.57
2836 2876 3.274281 AATGTGGAATGGGGGAGTTTT 57.726 42.857 0.00 0.00 0.00 2.43
3301 3831 0.250901 ATGTGTCCACTGAGGGTTGC 60.251 55.000 0.00 0.00 38.24 4.17
3349 3887 2.747460 GCCTGGAAGCATGCGTCA 60.747 61.111 30.28 19.61 0.00 4.35
3350 3888 3.044059 GCCTGGAAGCATGCGTCAC 62.044 63.158 30.28 20.92 0.00 3.67
3351 3889 1.672030 CCTGGAAGCATGCGTCACA 60.672 57.895 30.28 23.64 0.00 3.58
3352 3890 1.642037 CCTGGAAGCATGCGTCACAG 61.642 60.000 30.28 29.09 0.00 3.66
3353 3891 0.952497 CTGGAAGCATGCGTCACAGT 60.952 55.000 30.28 1.51 0.00 3.55
3354 3892 0.534877 TGGAAGCATGCGTCACAGTT 60.535 50.000 30.28 10.65 0.00 3.16
3355 3893 1.270571 TGGAAGCATGCGTCACAGTTA 60.271 47.619 30.28 10.00 0.00 2.24
3356 3894 2.009774 GGAAGCATGCGTCACAGTTAT 58.990 47.619 30.28 0.00 0.00 1.89
3357 3895 2.223112 GGAAGCATGCGTCACAGTTATG 60.223 50.000 30.28 0.00 0.00 1.90
3410 3948 8.969121 TTTGTACATTTCAGATGTATGCTTTG 57.031 30.769 0.00 0.00 36.94 2.77
3617 4155 3.007506 TCGGAAGCATACTGGAAGAACAA 59.992 43.478 0.00 0.00 37.43 2.83
3898 4436 2.633488 GGGTGTACCAAAGAGATCAGC 58.367 52.381 3.11 0.00 39.85 4.26
3911 4449 2.812591 GAGATCAGCCATTGCAATCGAT 59.187 45.455 9.53 9.18 41.13 3.59
3924 4462 1.123077 AATCGATGGCTGCCTCTACA 58.877 50.000 21.03 0.00 0.00 2.74
4025 4563 2.158066 TCTTAAAGTGGTGGAGGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
4032 4570 3.033773 TGGAGGAGGGATCCGGGA 61.034 66.667 5.45 0.00 39.91 5.14
4056 4594 4.196965 CTGCTCTCATCGCAGCAA 57.803 55.556 0.00 0.00 46.98 3.91
4109 4647 4.292186 AGCATGATGTAGGTTGAACTGT 57.708 40.909 0.00 0.00 0.00 3.55
4187 4726 2.480587 GGGTGTATTTTTATGTGGGCGC 60.481 50.000 0.00 0.00 0.00 6.53
4680 5221 5.004448 TGAACAAAACTAGGTCACAACACA 58.996 37.500 0.00 0.00 0.00 3.72
4769 5310 2.513753 CAGGTACCCTGTGCATCAAAA 58.486 47.619 8.74 0.00 45.82 2.44
4835 5376 0.108567 AACAAAACAACACCACGCCC 60.109 50.000 0.00 0.00 0.00 6.13
4854 5395 0.180406 CGGGTCGAAAGGAATCCCAT 59.820 55.000 5.91 0.00 38.15 4.00
4877 5418 2.882876 GCGAGGTTCCAGAGCGTA 59.117 61.111 0.00 0.00 0.00 4.42
4878 5419 1.226717 GCGAGGTTCCAGAGCGTAG 60.227 63.158 0.00 0.00 0.00 3.51
4879 5420 1.935327 GCGAGGTTCCAGAGCGTAGT 61.935 60.000 0.00 0.00 0.00 2.73
4880 5421 0.526662 CGAGGTTCCAGAGCGTAGTT 59.473 55.000 0.00 0.00 0.00 2.24
4881 5422 1.067776 CGAGGTTCCAGAGCGTAGTTT 60.068 52.381 0.00 0.00 0.00 2.66
4882 5423 2.338500 GAGGTTCCAGAGCGTAGTTTG 58.662 52.381 0.00 0.00 0.00 2.93
4883 5424 1.692519 AGGTTCCAGAGCGTAGTTTGT 59.307 47.619 0.00 0.00 0.00 2.83
4884 5425 2.067013 GGTTCCAGAGCGTAGTTTGTC 58.933 52.381 0.00 0.00 0.00 3.18
4885 5426 1.719780 GTTCCAGAGCGTAGTTTGTCG 59.280 52.381 0.00 0.00 0.00 4.35
4886 5427 0.242825 TCCAGAGCGTAGTTTGTCGG 59.757 55.000 0.00 0.00 0.00 4.79
4887 5428 1.352156 CCAGAGCGTAGTTTGTCGGC 61.352 60.000 0.00 0.00 0.00 5.54
4888 5429 0.666274 CAGAGCGTAGTTTGTCGGCA 60.666 55.000 0.00 0.00 0.00 5.69
4889 5430 0.246635 AGAGCGTAGTTTGTCGGCAT 59.753 50.000 0.00 0.00 0.00 4.40
4890 5431 0.370273 GAGCGTAGTTTGTCGGCATG 59.630 55.000 0.00 0.00 0.00 4.06
4891 5432 1.019278 AGCGTAGTTTGTCGGCATGG 61.019 55.000 0.00 0.00 0.00 3.66
4892 5433 1.977594 GCGTAGTTTGTCGGCATGGG 61.978 60.000 0.00 0.00 0.00 4.00
4893 5434 1.800681 GTAGTTTGTCGGCATGGGC 59.199 57.895 0.00 0.00 40.13 5.36
4894 5435 0.676782 GTAGTTTGTCGGCATGGGCT 60.677 55.000 0.00 0.00 40.87 5.19
4895 5436 0.906066 TAGTTTGTCGGCATGGGCTA 59.094 50.000 0.00 0.00 40.87 3.93
4896 5437 0.676782 AGTTTGTCGGCATGGGCTAC 60.677 55.000 0.00 0.00 40.87 3.58
4897 5438 1.377987 TTTGTCGGCATGGGCTACC 60.378 57.895 0.00 0.00 40.87 3.18
4898 5439 1.847798 TTTGTCGGCATGGGCTACCT 61.848 55.000 0.00 0.00 40.87 3.08
4899 5440 0.978667 TTGTCGGCATGGGCTACCTA 60.979 55.000 0.00 0.00 40.87 3.08
4900 5441 1.367840 GTCGGCATGGGCTACCTAG 59.632 63.158 0.00 0.00 40.87 3.02
4917 5458 3.895025 GCATCGGCTTGCTGAGAA 58.105 55.556 10.05 0.00 39.57 2.87
4918 5459 1.720301 GCATCGGCTTGCTGAGAAG 59.280 57.895 10.05 4.12 39.57 2.85
4919 5460 1.712977 GCATCGGCTTGCTGAGAAGG 61.713 60.000 10.05 1.58 39.57 3.46
4920 5461 0.107993 CATCGGCTTGCTGAGAAGGA 60.108 55.000 10.05 0.00 0.00 3.36
4921 5462 0.107945 ATCGGCTTGCTGAGAAGGAC 60.108 55.000 10.05 0.00 0.00 3.85
4922 5463 1.004560 CGGCTTGCTGAGAAGGACA 60.005 57.895 0.00 0.00 0.00 4.02
4923 5464 0.392193 CGGCTTGCTGAGAAGGACAT 60.392 55.000 0.00 0.00 0.00 3.06
4924 5465 1.093159 GGCTTGCTGAGAAGGACATG 58.907 55.000 0.00 0.00 0.00 3.21
4925 5466 0.450983 GCTTGCTGAGAAGGACATGC 59.549 55.000 0.00 0.00 0.00 4.06
4926 5467 1.817357 CTTGCTGAGAAGGACATGCA 58.183 50.000 0.00 0.00 0.00 3.96
4927 5468 2.156917 CTTGCTGAGAAGGACATGCAA 58.843 47.619 0.00 0.00 37.96 4.08
4928 5469 1.527034 TGCTGAGAAGGACATGCAAC 58.473 50.000 0.00 0.00 0.00 4.17
4929 5470 0.807496 GCTGAGAAGGACATGCAACC 59.193 55.000 0.00 0.00 0.00 3.77
4930 5471 1.883638 GCTGAGAAGGACATGCAACCA 60.884 52.381 9.88 0.00 0.00 3.67
4931 5472 2.507484 CTGAGAAGGACATGCAACCAA 58.493 47.619 9.88 0.00 0.00 3.67
4932 5473 2.227388 CTGAGAAGGACATGCAACCAAC 59.773 50.000 9.88 4.36 0.00 3.77
4933 5474 1.197721 GAGAAGGACATGCAACCAACG 59.802 52.381 9.88 0.00 0.00 4.10
4934 5475 0.240945 GAAGGACATGCAACCAACGG 59.759 55.000 9.88 0.00 0.00 4.44
4935 5476 1.805428 AAGGACATGCAACCAACGGC 61.805 55.000 9.88 0.00 0.00 5.68
4936 5477 2.268076 GGACATGCAACCAACGGCT 61.268 57.895 0.00 0.00 0.00 5.52
4937 5478 1.210155 GACATGCAACCAACGGCTC 59.790 57.895 0.00 0.00 0.00 4.70
4938 5479 2.200170 GACATGCAACCAACGGCTCC 62.200 60.000 0.00 0.00 0.00 4.70
4939 5480 2.115052 ATGCAACCAACGGCTCCA 59.885 55.556 0.00 0.00 0.00 3.86
4940 5481 1.973281 ATGCAACCAACGGCTCCAG 60.973 57.895 0.00 0.00 0.00 3.86
4941 5482 2.594592 GCAACCAACGGCTCCAGT 60.595 61.111 0.00 0.00 0.00 4.00
4942 5483 1.302192 GCAACCAACGGCTCCAGTA 60.302 57.895 0.00 0.00 0.00 2.74
4943 5484 1.574702 GCAACCAACGGCTCCAGTAC 61.575 60.000 0.00 0.00 0.00 2.73
4944 5485 1.005394 AACCAACGGCTCCAGTACG 60.005 57.895 0.00 0.00 0.00 3.67
4945 5486 2.125673 CCAACGGCTCCAGTACGG 60.126 66.667 0.00 0.00 0.00 4.02
4946 5487 2.642254 CCAACGGCTCCAGTACGGA 61.642 63.158 6.34 6.34 43.61 4.69
4947 5488 1.445582 CAACGGCTCCAGTACGGAC 60.446 63.158 0.00 0.00 39.64 4.79
4948 5489 1.605738 AACGGCTCCAGTACGGACT 60.606 57.895 0.00 0.00 39.64 3.85
4956 5497 3.588336 AGTACGGACTGGCGTCTC 58.412 61.111 0.00 0.73 40.10 3.36
4957 5498 2.099831 GTACGGACTGGCGTCTCG 59.900 66.667 8.84 11.65 40.10 4.04
4958 5499 3.129502 TACGGACTGGCGTCTCGG 61.130 66.667 16.95 0.00 40.10 4.63
4961 5502 4.436998 GGACTGGCGTCTCGGGTG 62.437 72.222 8.84 0.00 40.10 4.61
4962 5503 4.436998 GACTGGCGTCTCGGGTGG 62.437 72.222 0.00 0.00 37.19 4.61
4968 5509 4.873129 CGTCTCGGGTGGCGATGG 62.873 72.222 0.00 0.00 0.00 3.51
4969 5510 4.530857 GTCTCGGGTGGCGATGGG 62.531 72.222 0.00 0.00 0.00 4.00
5006 5547 4.320456 CCAGTGTGCCAGGCGAGT 62.320 66.667 7.03 0.00 0.00 4.18
5007 5548 2.740055 CAGTGTGCCAGGCGAGTC 60.740 66.667 7.03 0.00 0.00 3.36
5008 5549 4.363990 AGTGTGCCAGGCGAGTCG 62.364 66.667 8.54 8.54 0.00 4.18
5011 5552 4.803426 GTGCCAGGCGAGTCGGAG 62.803 72.222 15.52 0.00 0.00 4.63
5019 5560 3.827898 CGAGTCGGAGGGCTGGTC 61.828 72.222 4.10 0.00 0.00 4.02
5020 5561 3.827898 GAGTCGGAGGGCTGGTCG 61.828 72.222 0.00 0.00 0.00 4.79
5026 5567 3.775654 GAGGGCTGGTCGGAGGTG 61.776 72.222 0.00 0.00 0.00 4.00
5027 5568 4.316823 AGGGCTGGTCGGAGGTGA 62.317 66.667 0.00 0.00 0.00 4.02
5028 5569 3.775654 GGGCTGGTCGGAGGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
5029 5570 3.775654 GGCTGGTCGGAGGTGAGG 61.776 72.222 0.00 0.00 0.00 3.86
5030 5571 2.997897 GCTGGTCGGAGGTGAGGT 60.998 66.667 0.00 0.00 0.00 3.85
5031 5572 3.007973 GCTGGTCGGAGGTGAGGTC 62.008 68.421 0.00 0.00 0.00 3.85
5032 5573 2.675423 TGGTCGGAGGTGAGGTCG 60.675 66.667 0.00 0.00 0.00 4.79
5033 5574 3.450115 GGTCGGAGGTGAGGTCGG 61.450 72.222 0.00 0.00 0.00 4.79
5034 5575 4.131088 GTCGGAGGTGAGGTCGGC 62.131 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.995199 TCTTGAGATTTGCGAAGTCACT 58.005 40.909 1.73 0.00 0.00 3.41
1 2 4.389992 TCATCTTGAGATTTGCGAAGTCAC 59.610 41.667 1.73 0.00 31.21 3.67
2 3 4.568956 TCATCTTGAGATTTGCGAAGTCA 58.431 39.130 0.00 0.00 31.21 3.41
3 4 5.731599 ATCATCTTGAGATTTGCGAAGTC 57.268 39.130 0.00 0.00 31.21 3.01
4 5 6.293298 GCATATCATCTTGAGATTTGCGAAGT 60.293 38.462 0.00 0.00 39.43 3.01
5 6 6.078479 GCATATCATCTTGAGATTTGCGAAG 58.922 40.000 0.00 0.00 39.43 3.79
6 7 5.993891 GCATATCATCTTGAGATTTGCGAA 58.006 37.500 0.00 0.00 39.43 4.70
7 8 5.602458 GCATATCATCTTGAGATTTGCGA 57.398 39.130 0.00 0.00 39.43 5.10
9 10 4.379186 CCCGCATATCATCTTGAGATTTGC 60.379 45.833 8.05 8.05 42.90 3.68
10 11 4.379186 GCCCGCATATCATCTTGAGATTTG 60.379 45.833 0.00 0.00 31.21 2.32
11 12 3.755378 GCCCGCATATCATCTTGAGATTT 59.245 43.478 0.00 0.00 31.21 2.17
12 13 3.008813 AGCCCGCATATCATCTTGAGATT 59.991 43.478 0.00 0.00 31.21 2.40
13 14 2.570752 AGCCCGCATATCATCTTGAGAT 59.429 45.455 0.00 0.00 34.56 2.75
14 15 1.973515 AGCCCGCATATCATCTTGAGA 59.026 47.619 0.00 0.00 0.00 3.27
15 16 2.289257 TGAGCCCGCATATCATCTTGAG 60.289 50.000 0.00 0.00 0.00 3.02
16 17 1.693606 TGAGCCCGCATATCATCTTGA 59.306 47.619 0.00 0.00 0.00 3.02
17 18 2.074576 CTGAGCCCGCATATCATCTTG 58.925 52.381 0.00 0.00 0.00 3.02
18 19 1.696336 ACTGAGCCCGCATATCATCTT 59.304 47.619 0.00 0.00 0.00 2.40
19 20 1.274728 GACTGAGCCCGCATATCATCT 59.725 52.381 0.00 0.00 0.00 2.90
20 21 1.274728 AGACTGAGCCCGCATATCATC 59.725 52.381 0.00 0.00 0.00 2.92
21 22 1.274728 GAGACTGAGCCCGCATATCAT 59.725 52.381 0.00 0.00 0.00 2.45
22 23 0.676184 GAGACTGAGCCCGCATATCA 59.324 55.000 0.00 0.00 0.00 2.15
23 24 0.965439 AGAGACTGAGCCCGCATATC 59.035 55.000 0.00 0.00 0.00 1.63
24 25 0.965439 GAGAGACTGAGCCCGCATAT 59.035 55.000 0.00 0.00 0.00 1.78
25 26 1.448119 CGAGAGACTGAGCCCGCATA 61.448 60.000 0.00 0.00 0.00 3.14
26 27 2.780094 CGAGAGACTGAGCCCGCAT 61.780 63.158 0.00 0.00 0.00 4.73
27 28 3.443925 CGAGAGACTGAGCCCGCA 61.444 66.667 0.00 0.00 0.00 5.69
28 29 2.606155 CTTCGAGAGACTGAGCCCGC 62.606 65.000 0.00 0.00 41.84 6.13
29 30 1.431440 CTTCGAGAGACTGAGCCCG 59.569 63.158 0.00 0.00 41.84 6.13
30 31 0.968393 ACCTTCGAGAGACTGAGCCC 60.968 60.000 0.00 0.00 41.84 5.19
31 32 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
32 33 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
33 34 1.132262 GAGCACCTTCGAGAGACTGAG 59.868 57.143 0.00 0.00 41.84 3.35
34 35 1.169577 GAGCACCTTCGAGAGACTGA 58.830 55.000 0.00 0.00 41.84 3.41
35 36 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
36 37 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
37 38 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
38 39 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
39 40 1.339610 CCCTATGAGCACCTTCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
40 41 1.403814 CCCTATGAGCACCTTCGAGA 58.596 55.000 0.00 0.00 0.00 4.04
41 42 0.390860 CCCCTATGAGCACCTTCGAG 59.609 60.000 0.00 0.00 0.00 4.04
42 43 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
43 44 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
44 45 2.630580 CTCTACCCCTATGAGCACCTTC 59.369 54.545 0.00 0.00 0.00 3.46
45 46 2.022918 ACTCTACCCCTATGAGCACCTT 60.023 50.000 0.00 0.00 0.00 3.50
46 47 1.576272 ACTCTACCCCTATGAGCACCT 59.424 52.381 0.00 0.00 0.00 4.00
47 48 1.689273 CACTCTACCCCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
48 49 2.101582 CACACTCTACCCCTATGAGCAC 59.898 54.545 0.00 0.00 0.00 4.40
49 50 2.388735 CACACTCTACCCCTATGAGCA 58.611 52.381 0.00 0.00 0.00 4.26
50 51 1.069358 GCACACTCTACCCCTATGAGC 59.931 57.143 0.00 0.00 0.00 4.26
51 52 1.338337 CGCACACTCTACCCCTATGAG 59.662 57.143 0.00 0.00 0.00 2.90
52 53 1.341679 ACGCACACTCTACCCCTATGA 60.342 52.381 0.00 0.00 0.00 2.15
53 54 1.112113 ACGCACACTCTACCCCTATG 58.888 55.000 0.00 0.00 0.00 2.23
54 55 1.112113 CACGCACACTCTACCCCTAT 58.888 55.000 0.00 0.00 0.00 2.57
55 56 0.251474 ACACGCACACTCTACCCCTA 60.251 55.000 0.00 0.00 0.00 3.53
56 57 1.533273 ACACGCACACTCTACCCCT 60.533 57.895 0.00 0.00 0.00 4.79
57 58 1.374252 CACACGCACACTCTACCCC 60.374 63.158 0.00 0.00 0.00 4.95
58 59 0.944311 CACACACGCACACTCTACCC 60.944 60.000 0.00 0.00 0.00 3.69
59 60 1.557443 GCACACACGCACACTCTACC 61.557 60.000 0.00 0.00 0.00 3.18
60 61 1.853319 GCACACACGCACACTCTAC 59.147 57.895 0.00 0.00 0.00 2.59
61 62 1.660264 CGCACACACGCACACTCTA 60.660 57.895 0.00 0.00 0.00 2.43
62 63 2.961721 CGCACACACGCACACTCT 60.962 61.111 0.00 0.00 0.00 3.24
63 64 3.261951 ACGCACACACGCACACTC 61.262 61.111 0.00 0.00 36.19 3.51
64 65 3.563088 CACGCACACACGCACACT 61.563 61.111 0.00 0.00 36.19 3.55
65 66 3.860125 ACACGCACACACGCACAC 61.860 61.111 0.00 0.00 36.19 3.82
66 67 3.858989 CACACGCACACACGCACA 61.859 61.111 0.00 0.00 36.19 4.57
67 68 3.860125 ACACACGCACACACGCAC 61.860 61.111 0.00 0.00 36.19 5.34
68 69 3.858989 CACACACGCACACACGCA 61.859 61.111 0.00 0.00 36.19 5.24
70 71 4.918060 CGCACACACGCACACACG 62.918 66.667 0.00 0.00 39.50 4.49
71 72 2.842588 AAACGCACACACGCACACAC 62.843 55.000 0.00 0.00 36.19 3.82
72 73 1.359459 TAAACGCACACACGCACACA 61.359 50.000 0.00 0.00 36.19 3.72
73 74 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
74 75 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
75 76 1.458064 ACTATAAACGCACACACGCAC 59.542 47.619 0.00 0.00 36.19 5.34
76 77 1.457683 CACTATAAACGCACACACGCA 59.542 47.619 0.00 0.00 36.19 5.24
77 78 1.201877 CCACTATAAACGCACACACGC 60.202 52.381 0.00 0.00 36.19 5.34
78 79 2.063266 ACCACTATAAACGCACACACG 58.937 47.619 0.00 0.00 39.50 4.49
79 80 3.061322 TCACCACTATAAACGCACACAC 58.939 45.455 0.00 0.00 0.00 3.82
80 81 3.243941 ACTCACCACTATAAACGCACACA 60.244 43.478 0.00 0.00 0.00 3.72
81 82 3.122948 CACTCACCACTATAAACGCACAC 59.877 47.826 0.00 0.00 0.00 3.82
82 83 3.243941 ACACTCACCACTATAAACGCACA 60.244 43.478 0.00 0.00 0.00 4.57
83 84 3.323243 ACACTCACCACTATAAACGCAC 58.677 45.455 0.00 0.00 0.00 5.34
84 85 3.671008 ACACTCACCACTATAAACGCA 57.329 42.857 0.00 0.00 0.00 5.24
85 86 3.545078 CGTACACTCACCACTATAAACGC 59.455 47.826 0.00 0.00 0.00 4.84
86 87 4.973396 TCGTACACTCACCACTATAAACG 58.027 43.478 0.00 0.00 0.00 3.60
87 88 4.797349 GCTCGTACACTCACCACTATAAAC 59.203 45.833 0.00 0.00 0.00 2.01
88 89 4.437794 CGCTCGTACACTCACCACTATAAA 60.438 45.833 0.00 0.00 0.00 1.40
89 90 3.064408 CGCTCGTACACTCACCACTATAA 59.936 47.826 0.00 0.00 0.00 0.98
90 91 2.610833 CGCTCGTACACTCACCACTATA 59.389 50.000 0.00 0.00 0.00 1.31
91 92 1.400846 CGCTCGTACACTCACCACTAT 59.599 52.381 0.00 0.00 0.00 2.12
92 93 0.800631 CGCTCGTACACTCACCACTA 59.199 55.000 0.00 0.00 0.00 2.74
93 94 1.579932 CGCTCGTACACTCACCACT 59.420 57.895 0.00 0.00 0.00 4.00
94 95 2.087009 GCGCTCGTACACTCACCAC 61.087 63.158 0.00 0.00 0.00 4.16
95 96 1.802337 AAGCGCTCGTACACTCACCA 61.802 55.000 12.06 0.00 0.00 4.17
96 97 1.080705 AAGCGCTCGTACACTCACC 60.081 57.895 12.06 0.00 0.00 4.02
97 98 1.945776 GCAAGCGCTCGTACACTCAC 61.946 60.000 12.06 0.00 34.30 3.51
98 99 1.733041 GCAAGCGCTCGTACACTCA 60.733 57.895 12.06 0.00 34.30 3.41
99 100 2.778997 CGCAAGCGCTCGTACACTC 61.779 63.158 12.06 0.00 35.30 3.51
100 101 2.805353 CGCAAGCGCTCGTACACT 60.805 61.111 12.06 0.00 35.30 3.55
101 102 3.055905 GACGCAAGCGCTCGTACAC 62.056 63.158 22.11 8.33 44.19 2.90
102 103 2.803670 GACGCAAGCGCTCGTACA 60.804 61.111 22.11 0.00 44.19 2.90
103 104 2.504244 AGACGCAAGCGCTCGTAC 60.504 61.111 22.11 15.57 44.19 3.67
104 105 1.914531 TACAGACGCAAGCGCTCGTA 61.915 55.000 22.11 9.95 44.19 3.43
105 106 3.263503 TACAGACGCAAGCGCTCGT 62.264 57.895 22.23 22.23 44.19 4.18
106 107 2.504026 TACAGACGCAAGCGCTCG 60.504 61.111 12.06 14.49 44.19 5.03
107 108 0.179171 TAGTACAGACGCAAGCGCTC 60.179 55.000 12.06 11.06 44.19 5.03
108 109 0.456221 ATAGTACAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
109 110 0.572590 CATAGTACAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
110 111 1.909376 ACATAGTACAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
111 112 5.773239 TTTAACATAGTACAGACGCAAGC 57.227 39.130 0.00 0.00 45.62 4.01
134 135 7.286775 TGTCCAGTTAGCCAAGTTAAGATTTTT 59.713 33.333 0.00 0.00 0.00 1.94
135 136 6.775629 TGTCCAGTTAGCCAAGTTAAGATTTT 59.224 34.615 0.00 0.00 0.00 1.82
136 137 6.303839 TGTCCAGTTAGCCAAGTTAAGATTT 58.696 36.000 0.00 0.00 0.00 2.17
137 138 5.876357 TGTCCAGTTAGCCAAGTTAAGATT 58.124 37.500 0.00 0.00 0.00 2.40
138 139 5.499004 TGTCCAGTTAGCCAAGTTAAGAT 57.501 39.130 0.00 0.00 0.00 2.40
139 140 4.967084 TGTCCAGTTAGCCAAGTTAAGA 57.033 40.909 0.00 0.00 0.00 2.10
140 141 4.455877 CCTTGTCCAGTTAGCCAAGTTAAG 59.544 45.833 0.00 0.00 33.99 1.85
141 142 4.103469 TCCTTGTCCAGTTAGCCAAGTTAA 59.897 41.667 0.00 0.00 33.99 2.01
142 143 3.649023 TCCTTGTCCAGTTAGCCAAGTTA 59.351 43.478 0.00 0.00 33.99 2.24
143 144 2.441750 TCCTTGTCCAGTTAGCCAAGTT 59.558 45.455 0.00 0.00 33.99 2.66
144 145 2.054799 TCCTTGTCCAGTTAGCCAAGT 58.945 47.619 0.00 0.00 33.99 3.16
145 146 2.859165 TCCTTGTCCAGTTAGCCAAG 57.141 50.000 0.00 0.00 35.26 3.61
146 147 2.642311 TCATCCTTGTCCAGTTAGCCAA 59.358 45.455 0.00 0.00 0.00 4.52
147 148 2.265367 TCATCCTTGTCCAGTTAGCCA 58.735 47.619 0.00 0.00 0.00 4.75
148 149 3.118261 TGATCATCCTTGTCCAGTTAGCC 60.118 47.826 0.00 0.00 0.00 3.93
149 150 3.873952 GTGATCATCCTTGTCCAGTTAGC 59.126 47.826 0.00 0.00 0.00 3.09
150 151 5.114780 CAGTGATCATCCTTGTCCAGTTAG 58.885 45.833 0.00 0.00 0.00 2.34
151 152 4.623886 GCAGTGATCATCCTTGTCCAGTTA 60.624 45.833 0.00 0.00 0.00 2.24
152 153 3.871463 GCAGTGATCATCCTTGTCCAGTT 60.871 47.826 0.00 0.00 0.00 3.16
153 154 2.355513 GCAGTGATCATCCTTGTCCAGT 60.356 50.000 0.00 0.00 0.00 4.00
154 155 2.286872 GCAGTGATCATCCTTGTCCAG 58.713 52.381 0.00 0.00 0.00 3.86
155 156 1.065199 GGCAGTGATCATCCTTGTCCA 60.065 52.381 0.00 0.00 0.00 4.02
156 157 1.065199 TGGCAGTGATCATCCTTGTCC 60.065 52.381 0.00 3.11 0.00 4.02
157 158 2.408271 TGGCAGTGATCATCCTTGTC 57.592 50.000 0.00 0.00 0.00 3.18
158 159 2.240414 TCATGGCAGTGATCATCCTTGT 59.760 45.455 18.29 4.46 0.00 3.16
159 160 2.927028 TCATGGCAGTGATCATCCTTG 58.073 47.619 0.00 9.43 0.00 3.61
160 161 3.657398 TTCATGGCAGTGATCATCCTT 57.343 42.857 0.00 0.00 0.00 3.36
161 162 3.657398 TTTCATGGCAGTGATCATCCT 57.343 42.857 0.00 0.00 0.00 3.24
162 163 3.949754 TCTTTTCATGGCAGTGATCATCC 59.050 43.478 0.00 1.53 0.00 3.51
163 164 4.639310 AGTCTTTTCATGGCAGTGATCATC 59.361 41.667 0.00 0.00 0.00 2.92
164 165 4.597004 AGTCTTTTCATGGCAGTGATCAT 58.403 39.130 0.00 0.00 0.00 2.45
165 166 4.025040 AGTCTTTTCATGGCAGTGATCA 57.975 40.909 0.00 0.00 0.00 2.92
166 167 4.574013 CCTAGTCTTTTCATGGCAGTGATC 59.426 45.833 0.00 0.00 0.00 2.92
167 168 4.521146 CCTAGTCTTTTCATGGCAGTGAT 58.479 43.478 0.00 0.00 0.00 3.06
168 169 3.869912 GCCTAGTCTTTTCATGGCAGTGA 60.870 47.826 0.00 0.00 40.04 3.41
169 170 2.421424 GCCTAGTCTTTTCATGGCAGTG 59.579 50.000 0.00 0.00 40.04 3.66
170 171 2.040278 TGCCTAGTCTTTTCATGGCAGT 59.960 45.455 0.00 0.00 44.35 4.40
171 172 2.715046 TGCCTAGTCTTTTCATGGCAG 58.285 47.619 0.00 0.00 44.35 4.85
172 173 2.877097 TGCCTAGTCTTTTCATGGCA 57.123 45.000 0.00 0.00 46.59 4.92
173 174 2.424956 CCTTGCCTAGTCTTTTCATGGC 59.575 50.000 0.00 0.00 40.62 4.40
174 175 3.955471 TCCTTGCCTAGTCTTTTCATGG 58.045 45.455 0.00 0.00 0.00 3.66
175 176 4.337555 CCATCCTTGCCTAGTCTTTTCATG 59.662 45.833 0.00 0.00 0.00 3.07
176 177 4.018050 ACCATCCTTGCCTAGTCTTTTCAT 60.018 41.667 0.00 0.00 0.00 2.57
177 178 3.330701 ACCATCCTTGCCTAGTCTTTTCA 59.669 43.478 0.00 0.00 0.00 2.69
178 179 3.956744 ACCATCCTTGCCTAGTCTTTTC 58.043 45.455 0.00 0.00 0.00 2.29
179 180 4.043435 AGAACCATCCTTGCCTAGTCTTTT 59.957 41.667 0.00 0.00 0.00 2.27
180 181 3.589288 AGAACCATCCTTGCCTAGTCTTT 59.411 43.478 0.00 0.00 0.00 2.52
181 182 3.185455 AGAACCATCCTTGCCTAGTCTT 58.815 45.455 0.00 0.00 0.00 3.01
182 183 2.839228 AGAACCATCCTTGCCTAGTCT 58.161 47.619 0.00 0.00 0.00 3.24
183 184 3.636153 AAGAACCATCCTTGCCTAGTC 57.364 47.619 0.00 0.00 0.00 2.59
184 185 4.082125 CAAAAGAACCATCCTTGCCTAGT 58.918 43.478 0.00 0.00 0.00 2.57
185 186 4.335416 TCAAAAGAACCATCCTTGCCTAG 58.665 43.478 0.00 0.00 0.00 3.02
186 187 4.380843 TCAAAAGAACCATCCTTGCCTA 57.619 40.909 0.00 0.00 0.00 3.93
187 188 3.243359 TCAAAAGAACCATCCTTGCCT 57.757 42.857 0.00 0.00 0.00 4.75
188 189 4.335400 TTTCAAAAGAACCATCCTTGCC 57.665 40.909 0.00 0.00 0.00 4.52
210 211 6.959366 TCATCCTTTTCTATCCCCACATTTTT 59.041 34.615 0.00 0.00 0.00 1.94
211 212 6.381133 GTCATCCTTTTCTATCCCCACATTTT 59.619 38.462 0.00 0.00 0.00 1.82
212 213 5.893824 GTCATCCTTTTCTATCCCCACATTT 59.106 40.000 0.00 0.00 0.00 2.32
213 214 5.449553 GTCATCCTTTTCTATCCCCACATT 58.550 41.667 0.00 0.00 0.00 2.71
214 215 4.141158 GGTCATCCTTTTCTATCCCCACAT 60.141 45.833 0.00 0.00 0.00 3.21
215 216 3.202151 GGTCATCCTTTTCTATCCCCACA 59.798 47.826 0.00 0.00 0.00 4.17
216 217 3.459969 AGGTCATCCTTTTCTATCCCCAC 59.540 47.826 0.00 0.00 42.12 4.61
217 218 3.716872 GAGGTCATCCTTTTCTATCCCCA 59.283 47.826 0.00 0.00 45.24 4.96
218 219 3.977326 AGAGGTCATCCTTTTCTATCCCC 59.023 47.826 0.00 0.00 45.24 4.81
219 220 4.656112 TGAGAGGTCATCCTTTTCTATCCC 59.344 45.833 0.00 0.00 45.24 3.85
220 221 5.878406 TGAGAGGTCATCCTTTTCTATCC 57.122 43.478 0.00 0.00 45.24 2.59
221 222 6.883744 ACTTGAGAGGTCATCCTTTTCTATC 58.116 40.000 0.00 0.00 45.24 2.08
222 223 6.671779 AGACTTGAGAGGTCATCCTTTTCTAT 59.328 38.462 0.00 0.00 45.24 1.98
223 224 6.019748 AGACTTGAGAGGTCATCCTTTTCTA 58.980 40.000 0.00 0.00 45.24 2.10
224 225 4.843516 AGACTTGAGAGGTCATCCTTTTCT 59.156 41.667 0.00 0.00 45.24 2.52
225 226 5.159273 AGACTTGAGAGGTCATCCTTTTC 57.841 43.478 0.00 0.00 45.24 2.29
226 227 5.574970 AAGACTTGAGAGGTCATCCTTTT 57.425 39.130 0.00 0.00 45.24 2.27
227 228 6.882768 ATAAGACTTGAGAGGTCATCCTTT 57.117 37.500 0.00 0.00 45.24 3.11
228 229 9.308000 CTATATAAGACTTGAGAGGTCATCCTT 57.692 37.037 0.00 0.00 45.24 3.36
230 231 8.871629 TCTATATAAGACTTGAGAGGTCATCC 57.128 38.462 0.00 0.00 36.29 3.51
277 278 7.445402 GCCTCTGAAACCACATATGTATATTGT 59.555 37.037 8.32 0.00 0.00 2.71
325 326 4.222124 ACATCTTCTACCATGGGTCAAC 57.778 45.455 18.09 0.00 37.09 3.18
397 398 2.618053 CGAAGAGGGTGTACAATGGTC 58.382 52.381 0.00 0.00 0.00 4.02
399 400 2.012051 GCCGAAGAGGGTGTACAATGG 61.012 57.143 0.00 0.00 41.48 3.16
470 473 5.279506 CCACGCCTTTGACTATCTATATGGT 60.280 44.000 0.00 0.00 0.00 3.55
779 782 0.709992 AATAGGCAAAGCAAGGGGGA 59.290 50.000 0.00 0.00 0.00 4.81
806 810 2.693762 GCAAGCGGAGAATGCTGCA 61.694 57.895 4.13 4.13 43.14 4.41
809 813 3.900855 CTGCAAGCGGAGAATGCT 58.099 55.556 0.00 0.00 46.68 3.79
958 974 0.172578 CACGCCTCACTTACCGATCA 59.827 55.000 0.00 0.00 0.00 2.92
1302 1333 5.843019 TGGAAGAAGGAACAAATAGGAGT 57.157 39.130 0.00 0.00 0.00 3.85
1410 1442 7.884816 GCACTATGCGAAGTAATAAGGATTA 57.115 36.000 0.00 0.00 31.71 1.75
1454 1486 6.752168 ACAATTGTACGACAGGGTATATACC 58.248 40.000 21.88 21.88 45.71 2.73
1484 1516 4.271049 GTCGCATGCACAATATGAACTACT 59.729 41.667 19.57 0.00 0.00 2.57
1584 1616 7.880160 TTTGATTAATGATTGTAGACCCTGG 57.120 36.000 0.00 0.00 0.00 4.45
2004 2039 2.353269 CCACGTAAGAAATATGGCGCAA 59.647 45.455 10.83 0.00 43.62 4.85
2036 2071 8.692110 AATATGAACGTGTTGTAATCGTCTAA 57.308 30.769 0.00 0.00 36.80 2.10
2045 2080 7.385478 TGCTAGTTGAAATATGAACGTGTTGTA 59.615 33.333 0.00 0.00 0.00 2.41
2112 2147 9.466497 AACTATTGTGATGTATCAAATGAACCT 57.534 29.630 0.00 0.00 38.75 3.50
2207 2247 3.319137 AGTGTCGTAGTTGCATCACAT 57.681 42.857 0.00 0.00 0.00 3.21
2451 2491 8.518430 ACTAATGAATAATATTGCACACACCA 57.482 30.769 0.00 0.00 0.00 4.17
2698 2738 9.744468 AAGTTCCACACAAAATAAATAAGTGAC 57.256 29.630 0.00 0.00 34.47 3.67
2755 2795 6.483974 TCTGTGCAGCAATGAAATTTCAAAAT 59.516 30.769 23.91 11.14 41.13 1.82
2777 2817 7.530010 ACACGGTTAAATGATCAGAATTTCTG 58.470 34.615 18.49 18.49 45.59 3.02
2891 2931 7.039882 CGAGTTACCTGGTCATAGTAATTTGT 58.960 38.462 0.63 0.00 0.00 2.83
3284 3814 0.685097 TAGCAACCCTCAGTGGACAC 59.315 55.000 0.00 0.00 38.35 3.67
3301 3831 6.115448 AGGTGTAGGGCAAGCTAAATATAG 57.885 41.667 0.00 0.00 0.00 1.31
3317 3855 2.203070 GGCCCATGCGAGGTGTAG 60.203 66.667 0.00 0.00 38.85 2.74
3337 3875 2.416547 ACATAACTGTGACGCATGCTTC 59.583 45.455 16.80 16.80 33.22 3.86
3617 4155 4.039366 GTCCTGTGAGAACTAACCTTCAGT 59.961 45.833 0.00 0.00 0.00 3.41
3898 4436 0.596600 GCAGCCATCGATTGCAATGG 60.597 55.000 22.04 16.42 44.42 3.16
3911 4449 4.778213 ATATTCTTTGTAGAGGCAGCCA 57.222 40.909 15.80 0.00 0.00 4.75
3915 4453 9.547753 GAATACTGAATATTCTTTGTAGAGGCA 57.452 33.333 16.24 0.00 44.10 4.75
4032 4570 2.815945 CGATGAGAGCAGCCCCCAT 61.816 63.158 0.00 0.00 0.00 4.00
4056 4594 8.074972 GGAGTTATTTCTAGTCGACGAATATGT 58.925 37.037 10.46 4.69 0.00 2.29
4109 4647 4.583907 TCTCCATCTTTTTCATGTGCACAA 59.416 37.500 25.72 5.14 0.00 3.33
4187 4726 8.410141 TCAGTTCAAAACCAAACTAAATACCTG 58.590 33.333 0.00 0.00 34.05 4.00
4445 4985 4.523943 TGCAACATAGAGAAAGTGGCAAAT 59.476 37.500 0.00 0.00 39.12 2.32
4449 4989 4.418392 CATTGCAACATAGAGAAAGTGGC 58.582 43.478 0.00 0.00 32.83 5.01
4680 5221 2.413677 TTGCGGAACAACATGCACT 58.586 47.368 0.00 0.00 37.01 4.40
4769 5310 1.801178 GCTTGTTCTCTTAGCTTGCGT 59.199 47.619 0.00 0.00 32.26 5.24
4835 5376 0.180406 ATGGGATTCCTTTCGACCCG 59.820 55.000 2.01 0.00 43.04 5.28
4854 5395 3.068691 CTGGAACCTCGCGGGAGA 61.069 66.667 29.21 9.21 43.27 3.71
4877 5418 0.676782 GTAGCCCATGCCGACAAACT 60.677 55.000 0.00 0.00 38.69 2.66
4878 5419 1.654023 GGTAGCCCATGCCGACAAAC 61.654 60.000 0.00 0.00 38.69 2.93
4879 5420 1.377987 GGTAGCCCATGCCGACAAA 60.378 57.895 0.00 0.00 38.69 2.83
4880 5421 0.978667 TAGGTAGCCCATGCCGACAA 60.979 55.000 0.00 0.00 39.02 3.18
4881 5422 1.382009 TAGGTAGCCCATGCCGACA 60.382 57.895 0.00 0.00 39.02 4.35
4882 5423 1.367840 CTAGGTAGCCCATGCCGAC 59.632 63.158 0.00 0.00 39.02 4.79
4883 5424 2.507854 GCTAGGTAGCCCATGCCGA 61.508 63.158 0.00 0.00 43.39 5.54
4884 5425 2.031163 GCTAGGTAGCCCATGCCG 59.969 66.667 0.00 0.00 43.39 5.69
4900 5441 1.712977 CCTTCTCAGCAAGCCGATGC 61.713 60.000 0.00 0.00 46.78 3.91
4901 5442 0.107993 TCCTTCTCAGCAAGCCGATG 60.108 55.000 0.00 0.00 0.00 3.84
4902 5443 0.107945 GTCCTTCTCAGCAAGCCGAT 60.108 55.000 0.00 0.00 0.00 4.18
4903 5444 1.293498 GTCCTTCTCAGCAAGCCGA 59.707 57.895 0.00 0.00 0.00 5.54
4904 5445 0.392193 ATGTCCTTCTCAGCAAGCCG 60.392 55.000 0.00 0.00 0.00 5.52
4905 5446 1.093159 CATGTCCTTCTCAGCAAGCC 58.907 55.000 0.00 0.00 0.00 4.35
4906 5447 0.450983 GCATGTCCTTCTCAGCAAGC 59.549 55.000 0.00 0.00 0.00 4.01
4907 5448 1.817357 TGCATGTCCTTCTCAGCAAG 58.183 50.000 0.00 0.00 0.00 4.01
4908 5449 1.881973 GTTGCATGTCCTTCTCAGCAA 59.118 47.619 0.00 0.00 39.38 3.91
4909 5450 1.527034 GTTGCATGTCCTTCTCAGCA 58.473 50.000 0.00 0.00 0.00 4.41
4910 5451 0.807496 GGTTGCATGTCCTTCTCAGC 59.193 55.000 0.00 0.00 0.00 4.26
4911 5452 2.189594 TGGTTGCATGTCCTTCTCAG 57.810 50.000 0.00 0.00 0.00 3.35
4912 5453 2.229792 GTTGGTTGCATGTCCTTCTCA 58.770 47.619 0.00 0.00 0.00 3.27
4913 5454 1.197721 CGTTGGTTGCATGTCCTTCTC 59.802 52.381 0.00 0.00 0.00 2.87
4914 5455 1.238439 CGTTGGTTGCATGTCCTTCT 58.762 50.000 0.00 0.00 0.00 2.85
4915 5456 0.240945 CCGTTGGTTGCATGTCCTTC 59.759 55.000 0.00 0.00 0.00 3.46
4916 5457 1.805428 GCCGTTGGTTGCATGTCCTT 61.805 55.000 0.00 0.00 0.00 3.36
4917 5458 2.268076 GCCGTTGGTTGCATGTCCT 61.268 57.895 0.00 0.00 0.00 3.85
4918 5459 2.200170 GAGCCGTTGGTTGCATGTCC 62.200 60.000 0.00 0.00 0.00 4.02
4919 5460 1.210155 GAGCCGTTGGTTGCATGTC 59.790 57.895 0.00 0.00 0.00 3.06
4920 5461 2.268076 GGAGCCGTTGGTTGCATGT 61.268 57.895 0.00 0.00 0.00 3.21
4921 5462 2.203972 CTGGAGCCGTTGGTTGCATG 62.204 60.000 0.00 0.00 33.60 4.06
4922 5463 1.973281 CTGGAGCCGTTGGTTGCAT 60.973 57.895 0.00 0.00 33.60 3.96
4923 5464 2.046009 TACTGGAGCCGTTGGTTGCA 62.046 55.000 0.00 0.00 33.01 4.08
4924 5465 1.302192 TACTGGAGCCGTTGGTTGC 60.302 57.895 0.00 0.00 0.00 4.17
4925 5466 1.289109 CGTACTGGAGCCGTTGGTTG 61.289 60.000 0.00 0.00 0.00 3.77
4926 5467 1.005394 CGTACTGGAGCCGTTGGTT 60.005 57.895 0.00 0.00 0.00 3.67
4927 5468 2.654877 CGTACTGGAGCCGTTGGT 59.345 61.111 0.00 0.00 0.00 3.67
4928 5469 2.125673 CCGTACTGGAGCCGTTGG 60.126 66.667 0.00 0.00 42.00 3.77
4929 5470 2.967397 TCCGTACTGGAGCCGTTG 59.033 61.111 2.81 0.00 43.74 4.10
4989 5530 4.320456 ACTCGCCTGGCACACTGG 62.320 66.667 20.29 0.58 40.89 4.00
4990 5531 2.740055 GACTCGCCTGGCACACTG 60.740 66.667 20.29 1.39 0.00 3.66
4991 5532 4.363990 CGACTCGCCTGGCACACT 62.364 66.667 20.29 0.00 0.00 3.55
4994 5535 4.803426 CTCCGACTCGCCTGGCAC 62.803 72.222 20.29 5.84 0.00 5.01
5002 5543 3.827898 GACCAGCCCTCCGACTCG 61.828 72.222 0.00 0.00 0.00 4.18
5003 5544 3.827898 CGACCAGCCCTCCGACTC 61.828 72.222 0.00 0.00 0.00 3.36
5009 5550 3.775654 CACCTCCGACCAGCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
5010 5551 4.316823 TCACCTCCGACCAGCCCT 62.317 66.667 0.00 0.00 0.00 5.19
5011 5552 3.775654 CTCACCTCCGACCAGCCC 61.776 72.222 0.00 0.00 0.00 5.19
5012 5553 3.775654 CCTCACCTCCGACCAGCC 61.776 72.222 0.00 0.00 0.00 4.85
5013 5554 2.997897 ACCTCACCTCCGACCAGC 60.998 66.667 0.00 0.00 0.00 4.85
5014 5555 2.701780 CGACCTCACCTCCGACCAG 61.702 68.421 0.00 0.00 0.00 4.00
5015 5556 2.675423 CGACCTCACCTCCGACCA 60.675 66.667 0.00 0.00 0.00 4.02
5016 5557 3.450115 CCGACCTCACCTCCGACC 61.450 72.222 0.00 0.00 0.00 4.79
5017 5558 4.131088 GCCGACCTCACCTCCGAC 62.131 72.222 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.