Multiple sequence alignment - TraesCS1D01G237000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G237000 chr1D 100.000 2341 0 0 1 2341 326167371 326169711 0.000000e+00 4324.0
1 TraesCS1D01G237000 chr1B 93.092 912 39 12 521 1410 439448223 439449132 0.000000e+00 1314.0
2 TraesCS1D01G237000 chr1B 91.887 530 32 5 1 523 439447537 439448062 0.000000e+00 730.0
3 TraesCS1D01G237000 chr1B 85.821 536 75 1 1649 2183 439449516 439450051 3.380000e-158 568.0
4 TraesCS1D01G237000 chr1B 89.593 221 17 6 1396 1612 439449148 439449366 2.290000e-70 276.0
5 TraesCS1D01G237000 chr1A 91.537 898 42 20 539 1406 415641600 415642493 0.000000e+00 1206.0
6 TraesCS1D01G237000 chr1A 93.169 527 32 2 1 523 415640891 415641417 0.000000e+00 771.0
7 TraesCS1D01G237000 chr1A 83.908 522 76 6 1666 2183 415642753 415643270 2.090000e-135 492.0
8 TraesCS1D01G237000 chr1A 90.909 220 17 3 1396 1612 415642516 415642735 2.280000e-75 292.0
9 TraesCS1D01G237000 chr5A 82.724 301 46 4 1878 2176 654123138 654122842 1.780000e-66 263.0
10 TraesCS1D01G237000 chr5A 75.685 292 66 5 1894 2183 668903418 668903130 8.720000e-30 141.0
11 TraesCS1D01G237000 chr4A 88.535 157 17 1 2185 2341 471414515 471414670 3.070000e-44 189.0
12 TraesCS1D01G237000 chr4A 73.904 502 96 20 1689 2183 136752922 136752449 4.000000e-38 169.0
13 TraesCS1D01G237000 chr4D 88.889 153 16 1 2183 2335 177464160 177464009 1.100000e-43 187.0
14 TraesCS1D01G237000 chr4D 84.444 90 11 3 2097 2183 336664895 336664984 4.140000e-13 86.1
15 TraesCS1D01G237000 chr4D 72.449 294 55 10 1775 2054 336664602 336664883 1.160000e-08 71.3
16 TraesCS1D01G237000 chr3D 86.755 151 19 1 2183 2333 318543557 318543408 1.440000e-37 167.0
17 TraesCS1D01G237000 chr4B 77.700 287 51 11 1901 2183 622786338 622786061 1.860000e-36 163.0
18 TraesCS1D01G237000 chr2D 86.184 152 19 2 2183 2334 168221918 168221769 1.860000e-36 163.0
19 TraesCS1D01G237000 chr2D 86.957 138 13 4 2201 2338 371627551 371627419 1.450000e-32 150.0
20 TraesCS1D01G237000 chr6A 86.525 141 19 0 2183 2323 538085657 538085517 3.110000e-34 156.0
21 TraesCS1D01G237000 chr6A 84.892 139 21 0 2183 2321 337707513 337707651 8.720000e-30 141.0
22 TraesCS1D01G237000 chr6D 87.313 134 17 0 2186 2319 269111013 269110880 1.120000e-33 154.0
23 TraesCS1D01G237000 chr6D 96.774 31 1 0 1532 1562 336819858 336819888 4.000000e-03 52.8
24 TraesCS1D01G237000 chr7B 86.923 130 17 0 2188 2317 320997757 320997886 1.870000e-31 147.0
25 TraesCS1D01G237000 chr3B 76.159 302 55 14 1886 2183 562778771 562779059 2.420000e-30 143.0
26 TraesCS1D01G237000 chr3A 80.882 136 20 6 2053 2183 693344414 693344280 4.120000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G237000 chr1D 326167371 326169711 2340 False 4324.00 4324 100.00000 1 2341 1 chr1D.!!$F1 2340
1 TraesCS1D01G237000 chr1B 439447537 439450051 2514 False 722.00 1314 90.09825 1 2183 4 chr1B.!!$F1 2182
2 TraesCS1D01G237000 chr1A 415640891 415643270 2379 False 690.25 1206 89.88075 1 2183 4 chr1A.!!$F1 2182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 409 0.320247 CTGGCAGACAAGCTCGAAGT 60.32 55.0 9.42 0.0 34.17 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 2609 0.099791 CCACCGTCGCAAGTTTTTGT 59.9 50.0 0.0 0.0 36.65 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.496529 TGCATGTTTACTTTATATCTCTGGC 57.503 36.000 0.00 0.00 0.00 4.85
84 85 8.668353 GTGCAGATCTCAAAACATAATAGTTCA 58.332 33.333 0.00 0.00 0.00 3.18
118 119 5.806818 TGACCGGTTTCATTTTCAGGTATA 58.193 37.500 9.42 0.00 30.63 1.47
122 123 5.526111 CCGGTTTCATTTTCAGGTATACGAT 59.474 40.000 0.00 0.00 0.00 3.73
289 290 2.196595 TGGCTCCTACTATTGCAGGTT 58.803 47.619 0.00 0.00 33.37 3.50
291 292 3.134081 TGGCTCCTACTATTGCAGGTTAC 59.866 47.826 0.00 0.00 33.37 2.50
312 313 1.268794 CGTCAGGGTGAGAGATAAGCG 60.269 57.143 0.00 0.00 0.00 4.68
334 335 2.417719 GAACTCTCCACAATGAGCGTT 58.582 47.619 0.00 0.00 41.60 4.84
404 409 0.320247 CTGGCAGACAAGCTCGAAGT 60.320 55.000 9.42 0.00 34.17 3.01
472 477 9.227777 AGTTTTAGATCCTTGTTGTATTGTACC 57.772 33.333 0.00 0.00 0.00 3.34
532 732 3.922375 TGAGGACCATTTTGGGAGTTTT 58.078 40.909 0.00 0.00 43.37 2.43
578 778 8.877779 AGATGATTCGAGTATGAAAGAACAAAG 58.122 33.333 0.00 0.00 0.00 2.77
649 856 2.417651 CGGTTGTCCTAGGCATCGTTTA 60.418 50.000 2.96 0.00 0.00 2.01
650 857 3.740141 CGGTTGTCCTAGGCATCGTTTAT 60.740 47.826 2.96 0.00 0.00 1.40
651 858 4.500205 CGGTTGTCCTAGGCATCGTTTATA 60.500 45.833 2.96 0.00 0.00 0.98
652 859 4.748600 GGTTGTCCTAGGCATCGTTTATAC 59.251 45.833 2.96 0.00 0.00 1.47
653 860 5.452917 GGTTGTCCTAGGCATCGTTTATACT 60.453 44.000 2.96 0.00 0.00 2.12
654 861 5.449107 TGTCCTAGGCATCGTTTATACTC 57.551 43.478 2.96 0.00 0.00 2.59
655 862 4.280174 TGTCCTAGGCATCGTTTATACTCC 59.720 45.833 2.96 0.00 0.00 3.85
656 863 4.523558 GTCCTAGGCATCGTTTATACTCCT 59.476 45.833 2.96 0.00 0.00 3.69
657 864 5.010820 GTCCTAGGCATCGTTTATACTCCTT 59.989 44.000 2.96 0.00 0.00 3.36
658 865 5.601313 TCCTAGGCATCGTTTATACTCCTTT 59.399 40.000 2.96 0.00 0.00 3.11
782 1016 5.867330 TGACGGTGATTCCCTTTTACTTTA 58.133 37.500 0.00 0.00 0.00 1.85
875 1110 2.051345 GGTTTGTTGCCGCGTCAG 60.051 61.111 4.92 0.00 0.00 3.51
1137 1375 1.503818 GGTTCTTGCTCGCCGTTCAA 61.504 55.000 0.00 0.00 0.00 2.69
1194 1438 1.208614 GGAGCACTGCTTCGCTTTG 59.791 57.895 4.67 0.00 39.88 2.77
1230 1474 1.230324 GTTATTGCTCCGCCTGATCC 58.770 55.000 0.00 0.00 0.00 3.36
1328 1572 2.799017 TGGCTGAGCATGAAGATGTTT 58.201 42.857 6.82 0.00 31.50 2.83
1372 1623 4.981674 CGTGCTAAACAAAATCCATGTTGT 59.018 37.500 0.00 0.00 39.98 3.32
1394 1645 3.982475 TGAGAATCATCGTAGGCATCAC 58.018 45.455 0.00 0.00 42.56 3.06
1480 1767 5.813513 TTCTTCTTTAGGGGAAACTACGT 57.186 39.130 0.00 0.00 0.00 3.57
1481 1768 5.143376 TCTTCTTTAGGGGAAACTACGTG 57.857 43.478 0.00 0.00 0.00 4.49
1482 1769 3.323751 TCTTTAGGGGAAACTACGTGC 57.676 47.619 0.00 0.00 0.00 5.34
1484 1771 3.262405 TCTTTAGGGGAAACTACGTGCAT 59.738 43.478 0.00 0.00 0.00 3.96
1571 1860 9.654663 CGATCCCTTATAATTTAACTCCTAAGG 57.345 37.037 6.06 6.06 36.53 2.69
1609 1898 7.612244 CGATCTCCTATAATCCTTTAGTGGAGA 59.388 40.741 10.26 10.26 44.61 3.71
1613 1938 9.762381 CTCCTATAATCCTTTAGTGGAGATAGT 57.238 37.037 0.00 0.00 40.04 2.12
1619 1944 3.070302 CCTTTAGTGGAGATAGTGGAGGC 59.930 52.174 0.00 0.00 0.00 4.70
1628 1953 6.547510 GTGGAGATAGTGGAGGCAAAATTATT 59.452 38.462 0.00 0.00 0.00 1.40
1631 1956 7.503902 GGAGATAGTGGAGGCAAAATTATTCTT 59.496 37.037 0.00 0.00 0.00 2.52
1634 1959 6.765915 AGTGGAGGCAAAATTATTCTTCTC 57.234 37.500 0.00 0.00 0.00 2.87
1635 1960 6.248433 AGTGGAGGCAAAATTATTCTTCTCA 58.752 36.000 0.00 0.00 0.00 3.27
1644 1969 7.173047 GCAAAATTATTCTTCTCAGCCCAAAAA 59.827 33.333 0.00 0.00 0.00 1.94
1645 1970 8.498358 CAAAATTATTCTTCTCAGCCCAAAAAC 58.502 33.333 0.00 0.00 0.00 2.43
1647 1972 8.650143 AATTATTCTTCTCAGCCCAAAAACTA 57.350 30.769 0.00 0.00 0.00 2.24
1651 2054 3.418684 TCTCAGCCCAAAAACTACCTC 57.581 47.619 0.00 0.00 0.00 3.85
1655 2058 0.113580 GCCCAAAAACTACCTCCCCA 59.886 55.000 0.00 0.00 0.00 4.96
1681 2084 2.341101 CGCCCCTACTCGTCACAGT 61.341 63.158 0.00 0.00 0.00 3.55
1701 2104 0.604780 CATCACCGATGCCCCTGATC 60.605 60.000 0.00 0.00 33.17 2.92
1704 2107 3.958860 CCGATGCCCCTGATCCCC 61.959 72.222 0.00 0.00 0.00 4.81
1718 2121 0.399949 ATCCCCGCTGGTATGGAGAA 60.400 55.000 0.00 0.00 34.77 2.87
1727 2130 2.237143 CTGGTATGGAGAAGCAAGACCA 59.763 50.000 0.00 0.00 36.83 4.02
1785 2188 2.702847 GTTGCCAGAAACGACCACT 58.297 52.632 0.00 0.00 0.00 4.00
1788 2191 1.891919 GCCAGAAACGACCACTGCA 60.892 57.895 0.00 0.00 0.00 4.41
1793 2196 3.750373 AAACGACCACTGCACCGCT 62.750 57.895 0.00 0.00 0.00 5.52
1854 2259 2.669569 CACCTCACCGGCAACCAG 60.670 66.667 0.00 0.00 35.61 4.00
1864 2269 3.590824 GCAACCAGCGCCAATAGT 58.409 55.556 2.29 0.00 0.00 2.12
1884 2289 4.148825 GGTCGCTGCATCTCCGGT 62.149 66.667 0.00 0.00 0.00 5.28
2002 2407 0.768221 AGGACAAGAAGGTGGCTCCA 60.768 55.000 8.51 0.00 39.02 3.86
2040 2445 1.587054 CGCCTTGAACCTCGTCTCT 59.413 57.895 0.00 0.00 0.00 3.10
2183 2589 4.386652 CAGTGCATTGTTTGGTATTGCTTC 59.613 41.667 0.13 0.00 34.47 3.86
2184 2590 3.679502 GTGCATTGTTTGGTATTGCTTCC 59.320 43.478 0.00 0.00 34.47 3.46
2185 2591 3.323115 TGCATTGTTTGGTATTGCTTCCA 59.677 39.130 0.00 0.00 34.47 3.53
2186 2592 3.928375 GCATTGTTTGGTATTGCTTCCAG 59.072 43.478 0.00 0.00 35.05 3.86
2187 2593 4.321899 GCATTGTTTGGTATTGCTTCCAGA 60.322 41.667 0.00 0.00 35.05 3.86
2188 2594 5.625197 GCATTGTTTGGTATTGCTTCCAGAT 60.625 40.000 0.00 0.00 35.05 2.90
2189 2595 5.389859 TTGTTTGGTATTGCTTCCAGATG 57.610 39.130 0.00 0.00 35.05 2.90
2190 2596 3.763360 TGTTTGGTATTGCTTCCAGATGG 59.237 43.478 0.00 0.00 35.05 3.51
2191 2597 2.734755 TGGTATTGCTTCCAGATGGG 57.265 50.000 0.00 0.00 35.41 4.00
2192 2598 2.204463 TGGTATTGCTTCCAGATGGGA 58.796 47.619 0.00 0.00 46.61 4.37
2199 2605 2.447920 TCCAGATGGGACCACGGA 59.552 61.111 0.00 0.00 42.15 4.69
2200 2606 1.229368 TCCAGATGGGACCACGGAA 60.229 57.895 0.00 0.00 42.15 4.30
2201 2607 1.221840 CCAGATGGGACCACGGAAG 59.778 63.158 0.00 0.00 40.01 3.46
2202 2608 1.264749 CCAGATGGGACCACGGAAGA 61.265 60.000 0.00 0.00 40.01 2.87
2203 2609 0.613260 CAGATGGGACCACGGAAGAA 59.387 55.000 0.00 0.00 0.00 2.52
2204 2610 0.613777 AGATGGGACCACGGAAGAAC 59.386 55.000 0.00 0.00 0.00 3.01
2205 2611 0.323629 GATGGGACCACGGAAGAACA 59.676 55.000 0.00 0.00 0.00 3.18
2206 2612 0.768622 ATGGGACCACGGAAGAACAA 59.231 50.000 0.00 0.00 0.00 2.83
2207 2613 0.547075 TGGGACCACGGAAGAACAAA 59.453 50.000 0.00 0.00 0.00 2.83
2208 2614 1.064611 TGGGACCACGGAAGAACAAAA 60.065 47.619 0.00 0.00 0.00 2.44
2209 2615 2.025898 GGGACCACGGAAGAACAAAAA 58.974 47.619 0.00 0.00 0.00 1.94
2210 2616 2.223641 GGGACCACGGAAGAACAAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
2211 2617 2.686405 GGACCACGGAAGAACAAAAACT 59.314 45.455 0.00 0.00 0.00 2.66
2212 2618 3.129813 GGACCACGGAAGAACAAAAACTT 59.870 43.478 0.00 0.00 0.00 2.66
2213 2619 4.102649 GACCACGGAAGAACAAAAACTTG 58.897 43.478 0.00 0.00 0.00 3.16
2214 2620 2.857748 CCACGGAAGAACAAAAACTTGC 59.142 45.455 0.00 0.00 0.00 4.01
2218 2624 2.781646 GGAAGAACAAAAACTTGCGACG 59.218 45.455 0.00 0.00 0.00 5.12
2219 2625 2.468532 AGAACAAAAACTTGCGACGG 57.531 45.000 0.00 0.00 0.00 4.79
2220 2626 1.741145 AGAACAAAAACTTGCGACGGT 59.259 42.857 0.00 0.00 0.00 4.83
2221 2627 1.843753 GAACAAAAACTTGCGACGGTG 59.156 47.619 0.00 0.00 0.00 4.94
2222 2628 0.099791 ACAAAAACTTGCGACGGTGG 59.900 50.000 0.00 0.00 0.00 4.61
2223 2629 0.378962 CAAAAACTTGCGACGGTGGA 59.621 50.000 0.00 0.00 0.00 4.02
2224 2630 1.096416 AAAAACTTGCGACGGTGGAA 58.904 45.000 0.00 0.00 0.00 3.53
2225 2631 1.096416 AAAACTTGCGACGGTGGAAA 58.904 45.000 0.00 0.00 0.00 3.13
2226 2632 1.096416 AAACTTGCGACGGTGGAAAA 58.904 45.000 0.00 0.00 0.00 2.29
2227 2633 1.096416 AACTTGCGACGGTGGAAAAA 58.904 45.000 0.00 0.00 0.00 1.94
2228 2634 0.661020 ACTTGCGACGGTGGAAAAAG 59.339 50.000 0.00 0.00 0.00 2.27
2229 2635 0.661020 CTTGCGACGGTGGAAAAAGT 59.339 50.000 0.00 0.00 0.00 2.66
2230 2636 1.868498 CTTGCGACGGTGGAAAAAGTA 59.132 47.619 0.00 0.00 0.00 2.24
2231 2637 2.172851 TGCGACGGTGGAAAAAGTAT 57.827 45.000 0.00 0.00 0.00 2.12
2232 2638 2.496111 TGCGACGGTGGAAAAAGTATT 58.504 42.857 0.00 0.00 0.00 1.89
2233 2639 2.879646 TGCGACGGTGGAAAAAGTATTT 59.120 40.909 0.00 0.00 42.41 1.40
2234 2640 3.058777 TGCGACGGTGGAAAAAGTATTTC 60.059 43.478 0.00 0.00 37.28 2.17
2235 2641 3.728600 CGACGGTGGAAAAAGTATTTCG 58.271 45.455 0.00 0.00 37.28 3.46
2236 2642 3.423907 CGACGGTGGAAAAAGTATTTCGG 60.424 47.826 0.00 0.00 37.28 4.30
2237 2643 2.815503 ACGGTGGAAAAAGTATTTCGGG 59.184 45.455 0.00 0.00 37.28 5.14
2238 2644 2.815503 CGGTGGAAAAAGTATTTCGGGT 59.184 45.455 0.00 0.00 37.28 5.28
2239 2645 3.120095 CGGTGGAAAAAGTATTTCGGGTC 60.120 47.826 0.00 0.00 37.28 4.46
2240 2646 3.120095 GGTGGAAAAAGTATTTCGGGTCG 60.120 47.826 0.00 0.00 37.28 4.79
2241 2647 2.485038 TGGAAAAAGTATTTCGGGTCGC 59.515 45.455 0.00 0.00 37.28 5.19
2242 2648 2.745821 GGAAAAAGTATTTCGGGTCGCT 59.254 45.455 0.00 0.00 37.28 4.93
2243 2649 3.181513 GGAAAAAGTATTTCGGGTCGCTC 60.182 47.826 0.00 0.00 37.28 5.03
2244 2650 3.329929 AAAAGTATTTCGGGTCGCTCT 57.670 42.857 0.00 0.00 37.28 4.09
2245 2651 2.580966 AAGTATTTCGGGTCGCTCTC 57.419 50.000 0.00 0.00 0.00 3.20
2246 2652 1.765230 AGTATTTCGGGTCGCTCTCT 58.235 50.000 0.00 0.00 0.00 3.10
2247 2653 1.405821 AGTATTTCGGGTCGCTCTCTG 59.594 52.381 0.00 0.00 0.00 3.35
2248 2654 1.134560 GTATTTCGGGTCGCTCTCTGT 59.865 52.381 0.00 0.00 0.00 3.41
2249 2655 0.608640 ATTTCGGGTCGCTCTCTGTT 59.391 50.000 0.00 0.00 0.00 3.16
2250 2656 0.319555 TTTCGGGTCGCTCTCTGTTG 60.320 55.000 0.00 0.00 0.00 3.33
2251 2657 1.461091 TTCGGGTCGCTCTCTGTTGT 61.461 55.000 0.00 0.00 0.00 3.32
2252 2658 0.607217 TCGGGTCGCTCTCTGTTGTA 60.607 55.000 0.00 0.00 0.00 2.41
2253 2659 0.456221 CGGGTCGCTCTCTGTTGTAT 59.544 55.000 0.00 0.00 0.00 2.29
2254 2660 1.135083 CGGGTCGCTCTCTGTTGTATT 60.135 52.381 0.00 0.00 0.00 1.89
2255 2661 2.271800 GGGTCGCTCTCTGTTGTATTG 58.728 52.381 0.00 0.00 0.00 1.90
2256 2662 2.271800 GGTCGCTCTCTGTTGTATTGG 58.728 52.381 0.00 0.00 0.00 3.16
2257 2663 2.271800 GTCGCTCTCTGTTGTATTGGG 58.728 52.381 0.00 0.00 0.00 4.12
2258 2664 2.094182 GTCGCTCTCTGTTGTATTGGGA 60.094 50.000 0.00 0.00 0.00 4.37
2259 2665 2.565391 TCGCTCTCTGTTGTATTGGGAA 59.435 45.455 0.00 0.00 0.00 3.97
2260 2666 2.673368 CGCTCTCTGTTGTATTGGGAAC 59.327 50.000 0.00 0.00 0.00 3.62
2261 2667 3.674997 GCTCTCTGTTGTATTGGGAACA 58.325 45.455 0.00 0.00 39.83 3.18
2262 2668 4.265073 GCTCTCTGTTGTATTGGGAACAT 58.735 43.478 0.00 0.00 42.32 2.71
2263 2669 4.702131 GCTCTCTGTTGTATTGGGAACATT 59.298 41.667 0.00 0.00 42.32 2.71
2264 2670 5.183904 GCTCTCTGTTGTATTGGGAACATTT 59.816 40.000 0.00 0.00 42.32 2.32
2265 2671 6.573664 TCTCTGTTGTATTGGGAACATTTG 57.426 37.500 0.00 0.00 42.32 2.32
2266 2672 6.303054 TCTCTGTTGTATTGGGAACATTTGA 58.697 36.000 0.00 0.00 42.32 2.69
2267 2673 6.430925 TCTCTGTTGTATTGGGAACATTTGAG 59.569 38.462 0.00 0.00 42.32 3.02
2268 2674 6.303054 TCTGTTGTATTGGGAACATTTGAGA 58.697 36.000 0.00 0.00 42.32 3.27
2269 2675 6.775142 TCTGTTGTATTGGGAACATTTGAGAA 59.225 34.615 0.00 0.00 42.32 2.87
2270 2676 7.451255 TCTGTTGTATTGGGAACATTTGAGAAT 59.549 33.333 0.00 0.00 42.32 2.40
2271 2677 7.961351 TGTTGTATTGGGAACATTTGAGAATT 58.039 30.769 0.00 0.00 42.32 2.17
2272 2678 8.428063 TGTTGTATTGGGAACATTTGAGAATTT 58.572 29.630 0.00 0.00 42.32 1.82
2273 2679 9.921637 GTTGTATTGGGAACATTTGAGAATTTA 57.078 29.630 0.00 0.00 42.32 1.40
2279 2685 8.752005 TGGGAACATTTGAGAATTTATAGAGG 57.248 34.615 0.00 0.00 33.40 3.69
2280 2686 8.336235 TGGGAACATTTGAGAATTTATAGAGGT 58.664 33.333 0.00 0.00 33.40 3.85
2281 2687 8.624776 GGGAACATTTGAGAATTTATAGAGGTG 58.375 37.037 0.00 0.00 0.00 4.00
2282 2688 9.396022 GGAACATTTGAGAATTTATAGAGGTGA 57.604 33.333 0.00 0.00 0.00 4.02
2290 2696 9.268282 TGAGAATTTATAGAGGTGAAACTAGGT 57.732 33.333 0.00 0.00 36.74 3.08
2291 2697 9.752961 GAGAATTTATAGAGGTGAAACTAGGTC 57.247 37.037 0.00 0.00 36.74 3.85
2292 2698 9.268282 AGAATTTATAGAGGTGAAACTAGGTCA 57.732 33.333 0.00 0.00 36.74 4.02
2293 2699 9.886132 GAATTTATAGAGGTGAAACTAGGTCAA 57.114 33.333 0.00 0.00 36.74 3.18
2294 2700 9.892130 AATTTATAGAGGTGAAACTAGGTCAAG 57.108 33.333 0.00 0.00 36.74 3.02
2295 2701 8.660295 TTTATAGAGGTGAAACTAGGTCAAGA 57.340 34.615 0.00 0.00 36.74 3.02
2296 2702 6.783708 ATAGAGGTGAAACTAGGTCAAGAG 57.216 41.667 0.00 0.00 36.74 2.85
2297 2703 3.835395 AGAGGTGAAACTAGGTCAAGAGG 59.165 47.826 0.00 0.00 36.74 3.69
2298 2704 3.579151 GAGGTGAAACTAGGTCAAGAGGT 59.421 47.826 0.00 0.00 36.74 3.85
2299 2705 3.325135 AGGTGAAACTAGGTCAAGAGGTG 59.675 47.826 0.00 0.00 36.74 4.00
2300 2706 3.067833 GTGAAACTAGGTCAAGAGGTGC 58.932 50.000 0.00 0.00 0.00 5.01
2301 2707 2.038557 TGAAACTAGGTCAAGAGGTGCC 59.961 50.000 0.00 0.00 0.00 5.01
2302 2708 1.729586 AACTAGGTCAAGAGGTGCCA 58.270 50.000 0.00 0.00 0.00 4.92
2303 2709 0.977395 ACTAGGTCAAGAGGTGCCAC 59.023 55.000 0.00 0.00 0.00 5.01
2304 2710 0.108615 CTAGGTCAAGAGGTGCCACG 60.109 60.000 0.00 0.00 0.00 4.94
2305 2711 0.541063 TAGGTCAAGAGGTGCCACGA 60.541 55.000 0.00 0.00 0.00 4.35
2306 2712 1.374758 GGTCAAGAGGTGCCACGAG 60.375 63.158 0.00 0.00 0.00 4.18
2307 2713 1.374758 GTCAAGAGGTGCCACGAGG 60.375 63.158 0.00 0.00 38.23 4.63
2308 2714 2.046892 CAAGAGGTGCCACGAGGG 60.047 66.667 0.00 0.00 40.85 4.30
2309 2715 2.203788 AAGAGGTGCCACGAGGGA 60.204 61.111 0.00 0.00 40.01 4.20
2316 2722 3.948719 GCCACGAGGGACCCACAA 61.949 66.667 14.60 0.00 40.01 3.33
2317 2723 2.347490 CCACGAGGGACCCACAAG 59.653 66.667 14.60 3.08 40.01 3.16
2318 2724 2.358737 CACGAGGGACCCACAAGC 60.359 66.667 14.60 0.00 0.00 4.01
2319 2725 3.637273 ACGAGGGACCCACAAGCC 61.637 66.667 14.60 0.00 0.00 4.35
2320 2726 3.322466 CGAGGGACCCACAAGCCT 61.322 66.667 14.60 0.00 0.00 4.58
2321 2727 2.352805 GAGGGACCCACAAGCCTG 59.647 66.667 14.60 0.00 0.00 4.85
2322 2728 3.260100 AGGGACCCACAAGCCTGG 61.260 66.667 14.60 0.00 0.00 4.45
2323 2729 3.256960 GGGACCCACAAGCCTGGA 61.257 66.667 5.33 0.00 32.30 3.86
2324 2730 2.352805 GGACCCACAAGCCTGGAG 59.647 66.667 0.00 0.00 32.30 3.86
2325 2731 2.352805 GACCCACAAGCCTGGAGG 59.647 66.667 0.00 0.00 32.30 4.30
2326 2732 3.260100 ACCCACAAGCCTGGAGGG 61.260 66.667 12.23 12.23 43.92 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.359595 TGCACAAGCTGTATTTACTTAAACTG 58.640 34.615 0.00 0.00 42.74 3.16
84 85 5.013568 TGAAACCGGTCATAACGATACAT 57.986 39.130 8.04 0.00 0.00 2.29
97 98 4.632688 CGTATACCTGAAAATGAAACCGGT 59.367 41.667 0.00 0.00 0.00 5.28
118 119 0.391661 CTGGGCTAACTGTGCATCGT 60.392 55.000 0.00 0.00 0.00 3.73
122 123 0.472044 TGAACTGGGCTAACTGTGCA 59.528 50.000 0.00 0.00 0.00 4.57
289 290 3.552875 CTTATCTCTCACCCTGACGGTA 58.447 50.000 0.00 0.00 46.14 4.02
291 292 1.067821 GCTTATCTCTCACCCTGACGG 59.932 57.143 0.00 0.00 37.81 4.79
312 313 1.743996 GCTCATTGTGGAGAGTTCCC 58.256 55.000 0.00 0.00 43.33 3.97
334 335 5.298026 CCTTAACAGAGAGATGAGATCGTCA 59.702 44.000 4.93 0.00 40.38 4.35
376 377 2.042464 CTTGTCTGCCAGCCCTATCTA 58.958 52.381 0.00 0.00 0.00 1.98
388 389 0.436531 CGAACTTCGAGCTTGTCTGC 59.563 55.000 5.15 0.00 43.74 4.26
404 409 1.999735 CATAGTTCAAAGGCTCGCGAA 59.000 47.619 11.33 0.00 0.00 4.70
472 477 0.778815 GCTCAGACGTTCAAGACACG 59.221 55.000 0.00 0.00 43.52 4.49
532 732 1.760029 TGTGCATAGGCCAACTCGATA 59.240 47.619 5.01 0.00 40.13 2.92
578 778 2.356695 ACTTGGTAAAAACAGGACACGC 59.643 45.455 0.00 0.00 0.00 5.34
649 856 1.067071 GCGGGCGCTATAAAGGAGTAT 60.067 52.381 7.64 0.00 38.26 2.12
650 857 0.316204 GCGGGCGCTATAAAGGAGTA 59.684 55.000 7.64 0.00 38.26 2.59
651 858 1.069258 GCGGGCGCTATAAAGGAGT 59.931 57.895 7.64 0.00 38.26 3.85
652 859 2.022129 CGCGGGCGCTATAAAGGAG 61.022 63.158 7.64 0.00 39.32 3.69
653 860 1.454572 TACGCGGGCGCTATAAAGGA 61.455 55.000 12.47 0.00 44.19 3.36
654 861 0.389426 ATACGCGGGCGCTATAAAGG 60.389 55.000 12.47 0.00 44.19 3.11
655 862 0.713883 CATACGCGGGCGCTATAAAG 59.286 55.000 12.47 0.00 44.19 1.85
656 863 0.032403 ACATACGCGGGCGCTATAAA 59.968 50.000 12.47 0.00 44.19 1.40
657 864 0.880441 TACATACGCGGGCGCTATAA 59.120 50.000 12.47 0.00 44.19 0.98
658 865 0.168788 GTACATACGCGGGCGCTATA 59.831 55.000 12.47 0.00 44.19 1.31
803 1037 1.300481 CTCGTCGGTCTATCTCTGCA 58.700 55.000 0.00 0.00 0.00 4.41
804 1038 0.040781 GCTCGTCGGTCTATCTCTGC 60.041 60.000 0.00 0.00 0.00 4.26
808 1042 0.464735 AGCAGCTCGTCGGTCTATCT 60.465 55.000 0.00 0.00 0.00 1.98
1108 1346 0.179045 AGCAAGAACCAGTTGTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
1109 1347 0.235926 GAGCAAGAACCAGTTGTCGC 59.764 55.000 0.00 0.00 0.00 5.19
1137 1375 2.631062 TCACTGATGGTACCTGTCGTTT 59.369 45.455 14.36 0.00 0.00 3.60
1194 1438 0.039527 AACGCGGCAATCTCAAAACC 60.040 50.000 12.47 0.00 0.00 3.27
1230 1474 7.021196 CAGTAATACCTGGAAAACAATGAACG 58.979 38.462 0.00 0.00 0.00 3.95
1328 1572 1.202417 GCTACTCCTCACGCATGCTTA 60.202 52.381 17.13 0.00 0.00 3.09
1372 1623 4.371786 GTGATGCCTACGATGATTCTCAA 58.628 43.478 0.00 0.00 0.00 3.02
1394 1645 5.120674 TGCAATCTTAAGTGTGATGAACTCG 59.879 40.000 1.63 0.00 0.00 4.18
1467 1754 2.579410 AAATGCACGTAGTTTCCCCT 57.421 45.000 0.00 0.00 41.61 4.79
1503 1791 9.726438 ACACCTTAGTTATAATATGATCAAGCC 57.274 33.333 0.00 0.00 0.00 4.35
1523 1812 2.430332 GCTAGAGATGCTCTCACACCTT 59.570 50.000 13.42 0.00 45.73 3.50
1571 1860 2.243810 AGGAGATCGGTTAGAGATGCC 58.756 52.381 0.00 0.00 0.00 4.40
1609 1898 8.055181 TGAGAAGAATAATTTTGCCTCCACTAT 58.945 33.333 0.00 0.00 0.00 2.12
1613 1938 5.126061 GCTGAGAAGAATAATTTTGCCTCCA 59.874 40.000 0.00 0.00 0.00 3.86
1619 1944 8.498358 GTTTTTGGGCTGAGAAGAATAATTTTG 58.502 33.333 0.00 0.00 0.00 2.44
1628 1953 3.394606 AGGTAGTTTTTGGGCTGAGAAGA 59.605 43.478 0.00 0.00 0.00 2.87
1631 1956 2.039879 GGAGGTAGTTTTTGGGCTGAGA 59.960 50.000 0.00 0.00 0.00 3.27
1634 1959 1.545841 GGGAGGTAGTTTTTGGGCTG 58.454 55.000 0.00 0.00 0.00 4.85
1635 1960 0.408309 GGGGAGGTAGTTTTTGGGCT 59.592 55.000 0.00 0.00 0.00 5.19
1677 2080 1.221840 GGGCATCGGTGATGACTGT 59.778 57.895 12.08 0.00 46.46 3.55
1681 2084 1.056125 ATCAGGGGCATCGGTGATGA 61.056 55.000 10.81 0.00 42.09 2.92
1701 2104 1.447643 CTTCTCCATACCAGCGGGG 59.552 63.158 8.08 1.20 44.81 5.73
1704 2107 1.134699 TCTTGCTTCTCCATACCAGCG 60.135 52.381 0.00 0.00 34.82 5.18
1710 2113 3.523157 TGGAATGGTCTTGCTTCTCCATA 59.477 43.478 0.00 0.00 39.39 2.74
1718 2121 0.251341 GGTGGTGGAATGGTCTTGCT 60.251 55.000 0.00 0.00 0.00 3.91
1809 2212 1.208293 GAAGGTTTTTGGTGCCCAACA 59.792 47.619 6.19 0.00 43.82 3.33
1854 2259 0.529992 AGCGACCTTACTATTGGCGC 60.530 55.000 0.00 0.00 43.58 6.53
1859 2264 3.243907 GGAGATGCAGCGACCTTACTATT 60.244 47.826 12.56 0.00 0.00 1.73
1864 2269 1.437573 CGGAGATGCAGCGACCTTA 59.562 57.895 16.35 0.00 0.00 2.69
1895 2300 3.088941 TTGGAGTAGCGGGATGGCG 62.089 63.158 0.00 0.00 38.18 5.69
1907 2312 2.030562 CTTGCCGACGGTTGGAGT 59.969 61.111 18.83 0.00 0.00 3.85
1938 2343 3.803082 CCGACACAGCCGCCATTG 61.803 66.667 0.00 0.00 0.00 2.82
1975 2380 4.464947 CCACCTTCTTGTCCTTCTTCTTT 58.535 43.478 0.00 0.00 0.00 2.52
2029 2434 1.186267 GGGTGGTCAGAGACGAGGTT 61.186 60.000 0.00 0.00 32.65 3.50
2085 2490 2.280524 CACGGCCCTTGTTGTCGA 60.281 61.111 0.00 0.00 0.00 4.20
2142 2547 4.497340 GCACTGACCGAAATGAAAAGACAA 60.497 41.667 0.00 0.00 0.00 3.18
2161 2567 4.559153 GAAGCAATACCAAACAATGCACT 58.441 39.130 0.00 0.00 39.42 4.40
2183 2589 1.221840 CTTCCGTGGTCCCATCTGG 59.778 63.158 0.00 0.00 0.00 3.86
2184 2590 0.613260 TTCTTCCGTGGTCCCATCTG 59.387 55.000 0.00 0.00 0.00 2.90
2185 2591 0.613777 GTTCTTCCGTGGTCCCATCT 59.386 55.000 0.00 0.00 0.00 2.90
2186 2592 0.323629 TGTTCTTCCGTGGTCCCATC 59.676 55.000 0.00 0.00 0.00 3.51
2187 2593 0.768622 TTGTTCTTCCGTGGTCCCAT 59.231 50.000 0.00 0.00 0.00 4.00
2188 2594 0.547075 TTTGTTCTTCCGTGGTCCCA 59.453 50.000 0.00 0.00 0.00 4.37
2189 2595 1.682740 TTTTGTTCTTCCGTGGTCCC 58.317 50.000 0.00 0.00 0.00 4.46
2190 2596 2.686405 AGTTTTTGTTCTTCCGTGGTCC 59.314 45.455 0.00 0.00 0.00 4.46
2191 2597 4.102649 CAAGTTTTTGTTCTTCCGTGGTC 58.897 43.478 0.00 0.00 0.00 4.02
2192 2598 3.674955 GCAAGTTTTTGTTCTTCCGTGGT 60.675 43.478 0.00 0.00 36.65 4.16
2193 2599 2.857748 GCAAGTTTTTGTTCTTCCGTGG 59.142 45.455 0.00 0.00 36.65 4.94
2194 2600 2.529894 CGCAAGTTTTTGTTCTTCCGTG 59.470 45.455 0.00 0.00 36.65 4.94
2195 2601 2.420722 TCGCAAGTTTTTGTTCTTCCGT 59.579 40.909 0.00 0.00 36.65 4.69
2196 2602 2.781646 GTCGCAAGTTTTTGTTCTTCCG 59.218 45.455 0.00 0.00 36.65 4.30
2197 2603 2.781646 CGTCGCAAGTTTTTGTTCTTCC 59.218 45.455 0.00 0.00 36.65 3.46
2198 2604 2.781646 CCGTCGCAAGTTTTTGTTCTTC 59.218 45.455 0.00 0.00 36.65 2.87
2199 2605 2.162809 ACCGTCGCAAGTTTTTGTTCTT 59.837 40.909 0.00 0.00 36.65 2.52
2200 2606 1.741145 ACCGTCGCAAGTTTTTGTTCT 59.259 42.857 0.00 0.00 36.65 3.01
2201 2607 1.843753 CACCGTCGCAAGTTTTTGTTC 59.156 47.619 0.00 0.00 36.65 3.18
2202 2608 1.468395 CCACCGTCGCAAGTTTTTGTT 60.468 47.619 0.00 0.00 36.65 2.83
2203 2609 0.099791 CCACCGTCGCAAGTTTTTGT 59.900 50.000 0.00 0.00 36.65 2.83
2204 2610 0.378962 TCCACCGTCGCAAGTTTTTG 59.621 50.000 0.00 0.00 37.36 2.44
2205 2611 1.096416 TTCCACCGTCGCAAGTTTTT 58.904 45.000 0.00 0.00 39.48 1.94
2206 2612 1.096416 TTTCCACCGTCGCAAGTTTT 58.904 45.000 0.00 0.00 39.48 2.43
2207 2613 1.096416 TTTTCCACCGTCGCAAGTTT 58.904 45.000 0.00 0.00 39.48 2.66
2208 2614 1.064952 CTTTTTCCACCGTCGCAAGTT 59.935 47.619 0.00 0.00 39.48 2.66
2209 2615 0.661020 CTTTTTCCACCGTCGCAAGT 59.339 50.000 0.00 0.00 39.48 3.16
2210 2616 0.661020 ACTTTTTCCACCGTCGCAAG 59.339 50.000 0.00 0.00 0.00 4.01
2211 2617 1.950828 TACTTTTTCCACCGTCGCAA 58.049 45.000 0.00 0.00 0.00 4.85
2212 2618 2.172851 ATACTTTTTCCACCGTCGCA 57.827 45.000 0.00 0.00 0.00 5.10
2213 2619 3.485633 GAAATACTTTTTCCACCGTCGC 58.514 45.455 0.00 0.00 0.00 5.19
2214 2620 3.423907 CCGAAATACTTTTTCCACCGTCG 60.424 47.826 0.00 0.00 0.00 5.12
2215 2621 3.120095 CCCGAAATACTTTTTCCACCGTC 60.120 47.826 0.00 0.00 0.00 4.79
2216 2622 2.815503 CCCGAAATACTTTTTCCACCGT 59.184 45.455 0.00 0.00 0.00 4.83
2217 2623 2.815503 ACCCGAAATACTTTTTCCACCG 59.184 45.455 0.00 0.00 0.00 4.94
2218 2624 3.120095 CGACCCGAAATACTTTTTCCACC 60.120 47.826 0.00 0.00 0.00 4.61
2219 2625 3.668757 GCGACCCGAAATACTTTTTCCAC 60.669 47.826 0.00 0.00 0.00 4.02
2220 2626 2.485038 GCGACCCGAAATACTTTTTCCA 59.515 45.455 0.00 0.00 0.00 3.53
2221 2627 2.745821 AGCGACCCGAAATACTTTTTCC 59.254 45.455 0.00 0.00 0.00 3.13
2222 2628 3.683340 AGAGCGACCCGAAATACTTTTTC 59.317 43.478 0.00 0.00 0.00 2.29
2223 2629 3.671716 AGAGCGACCCGAAATACTTTTT 58.328 40.909 0.00 0.00 0.00 1.94
2224 2630 3.056035 AGAGAGCGACCCGAAATACTTTT 60.056 43.478 0.00 0.00 0.00 2.27
2225 2631 2.496470 AGAGAGCGACCCGAAATACTTT 59.504 45.455 0.00 0.00 0.00 2.66
2226 2632 2.100989 AGAGAGCGACCCGAAATACTT 58.899 47.619 0.00 0.00 0.00 2.24
2227 2633 1.405821 CAGAGAGCGACCCGAAATACT 59.594 52.381 0.00 0.00 0.00 2.12
2228 2634 1.134560 ACAGAGAGCGACCCGAAATAC 59.865 52.381 0.00 0.00 0.00 1.89
2229 2635 1.471119 ACAGAGAGCGACCCGAAATA 58.529 50.000 0.00 0.00 0.00 1.40
2230 2636 0.608640 AACAGAGAGCGACCCGAAAT 59.391 50.000 0.00 0.00 0.00 2.17
2231 2637 0.319555 CAACAGAGAGCGACCCGAAA 60.320 55.000 0.00 0.00 0.00 3.46
2232 2638 1.289066 CAACAGAGAGCGACCCGAA 59.711 57.895 0.00 0.00 0.00 4.30
2233 2639 0.607217 TACAACAGAGAGCGACCCGA 60.607 55.000 0.00 0.00 0.00 5.14
2234 2640 0.456221 ATACAACAGAGAGCGACCCG 59.544 55.000 0.00 0.00 0.00 5.28
2235 2641 2.271800 CAATACAACAGAGAGCGACCC 58.728 52.381 0.00 0.00 0.00 4.46
2236 2642 2.271800 CCAATACAACAGAGAGCGACC 58.728 52.381 0.00 0.00 0.00 4.79
2237 2643 2.094182 TCCCAATACAACAGAGAGCGAC 60.094 50.000 0.00 0.00 0.00 5.19
2238 2644 2.176045 TCCCAATACAACAGAGAGCGA 58.824 47.619 0.00 0.00 0.00 4.93
2239 2645 2.672961 TCCCAATACAACAGAGAGCG 57.327 50.000 0.00 0.00 0.00 5.03
2240 2646 3.674997 TGTTCCCAATACAACAGAGAGC 58.325 45.455 0.00 0.00 0.00 4.09
2241 2647 6.430925 TCAAATGTTCCCAATACAACAGAGAG 59.569 38.462 0.00 0.00 35.99 3.20
2242 2648 6.303054 TCAAATGTTCCCAATACAACAGAGA 58.697 36.000 0.00 0.00 35.99 3.10
2243 2649 6.430925 TCTCAAATGTTCCCAATACAACAGAG 59.569 38.462 0.00 0.00 35.99 3.35
2244 2650 6.303054 TCTCAAATGTTCCCAATACAACAGA 58.697 36.000 0.00 0.00 35.99 3.41
2245 2651 6.573664 TCTCAAATGTTCCCAATACAACAG 57.426 37.500 0.00 0.00 35.99 3.16
2246 2652 6.968263 TTCTCAAATGTTCCCAATACAACA 57.032 33.333 0.00 0.00 36.94 3.33
2247 2653 8.831715 AAATTCTCAAATGTTCCCAATACAAC 57.168 30.769 0.00 0.00 0.00 3.32
2253 2659 9.189156 CCTCTATAAATTCTCAAATGTTCCCAA 57.811 33.333 0.00 0.00 0.00 4.12
2254 2660 8.336235 ACCTCTATAAATTCTCAAATGTTCCCA 58.664 33.333 0.00 0.00 0.00 4.37
2255 2661 8.624776 CACCTCTATAAATTCTCAAATGTTCCC 58.375 37.037 0.00 0.00 0.00 3.97
2256 2662 9.396022 TCACCTCTATAAATTCTCAAATGTTCC 57.604 33.333 0.00 0.00 0.00 3.62
2264 2670 9.268282 ACCTAGTTTCACCTCTATAAATTCTCA 57.732 33.333 0.00 0.00 0.00 3.27
2265 2671 9.752961 GACCTAGTTTCACCTCTATAAATTCTC 57.247 37.037 0.00 0.00 0.00 2.87
2266 2672 9.268282 TGACCTAGTTTCACCTCTATAAATTCT 57.732 33.333 0.00 0.00 0.00 2.40
2267 2673 9.886132 TTGACCTAGTTTCACCTCTATAAATTC 57.114 33.333 0.00 0.00 0.00 2.17
2268 2674 9.892130 CTTGACCTAGTTTCACCTCTATAAATT 57.108 33.333 0.00 0.00 0.00 1.82
2269 2675 9.268282 TCTTGACCTAGTTTCACCTCTATAAAT 57.732 33.333 0.00 0.00 0.00 1.40
2270 2676 8.660295 TCTTGACCTAGTTTCACCTCTATAAA 57.340 34.615 0.00 0.00 0.00 1.40
2271 2677 7.342284 CCTCTTGACCTAGTTTCACCTCTATAA 59.658 40.741 0.00 0.00 0.00 0.98
2272 2678 6.834451 CCTCTTGACCTAGTTTCACCTCTATA 59.166 42.308 0.00 0.00 0.00 1.31
2273 2679 5.659079 CCTCTTGACCTAGTTTCACCTCTAT 59.341 44.000 0.00 0.00 0.00 1.98
2274 2680 5.017490 CCTCTTGACCTAGTTTCACCTCTA 58.983 45.833 0.00 0.00 0.00 2.43
2275 2681 3.835395 CCTCTTGACCTAGTTTCACCTCT 59.165 47.826 0.00 0.00 0.00 3.69
2276 2682 3.579151 ACCTCTTGACCTAGTTTCACCTC 59.421 47.826 0.00 0.00 0.00 3.85
2277 2683 3.325135 CACCTCTTGACCTAGTTTCACCT 59.675 47.826 0.00 0.00 0.00 4.00
2278 2684 3.665190 CACCTCTTGACCTAGTTTCACC 58.335 50.000 0.00 0.00 0.00 4.02
2279 2685 3.067833 GCACCTCTTGACCTAGTTTCAC 58.932 50.000 0.00 0.00 0.00 3.18
2280 2686 2.038557 GGCACCTCTTGACCTAGTTTCA 59.961 50.000 0.00 0.00 0.00 2.69
2281 2687 2.038557 TGGCACCTCTTGACCTAGTTTC 59.961 50.000 0.00 0.00 28.00 2.78
2282 2688 2.054799 TGGCACCTCTTGACCTAGTTT 58.945 47.619 0.00 0.00 28.00 2.66
2283 2689 1.348036 GTGGCACCTCTTGACCTAGTT 59.652 52.381 6.29 0.00 28.00 2.24
2284 2690 0.977395 GTGGCACCTCTTGACCTAGT 59.023 55.000 6.29 0.00 28.00 2.57
2285 2691 0.108615 CGTGGCACCTCTTGACCTAG 60.109 60.000 12.86 0.00 28.00 3.02
2286 2692 0.541063 TCGTGGCACCTCTTGACCTA 60.541 55.000 12.86 0.00 28.00 3.08
2287 2693 1.821061 CTCGTGGCACCTCTTGACCT 61.821 60.000 12.86 0.00 28.00 3.85
2288 2694 1.374758 CTCGTGGCACCTCTTGACC 60.375 63.158 12.86 0.00 28.00 4.02
2289 2695 1.374758 CCTCGTGGCACCTCTTGAC 60.375 63.158 12.86 0.00 0.00 3.18
2290 2696 2.583441 CCCTCGTGGCACCTCTTGA 61.583 63.158 12.86 1.83 0.00 3.02
2291 2697 2.046892 CCCTCGTGGCACCTCTTG 60.047 66.667 12.86 0.00 0.00 3.02
2292 2698 2.203788 TCCCTCGTGGCACCTCTT 60.204 61.111 12.86 0.00 0.00 2.85
2293 2699 2.997897 GTCCCTCGTGGCACCTCT 60.998 66.667 12.86 0.00 0.00 3.69
2294 2700 4.083862 GGTCCCTCGTGGCACCTC 62.084 72.222 12.86 0.00 33.75 3.85
2297 2703 4.699522 GTGGGTCCCTCGTGGCAC 62.700 72.222 10.00 7.79 0.00 5.01
2299 2705 3.901797 CTTGTGGGTCCCTCGTGGC 62.902 68.421 10.00 0.00 0.00 5.01
2300 2706 2.347490 CTTGTGGGTCCCTCGTGG 59.653 66.667 10.00 0.00 0.00 4.94
2301 2707 2.358737 GCTTGTGGGTCCCTCGTG 60.359 66.667 10.00 3.71 0.00 4.35
2302 2708 3.637273 GGCTTGTGGGTCCCTCGT 61.637 66.667 10.00 0.00 0.00 4.18
2303 2709 3.322466 AGGCTTGTGGGTCCCTCG 61.322 66.667 10.00 0.00 0.00 4.63
2304 2710 2.352805 CAGGCTTGTGGGTCCCTC 59.647 66.667 10.00 6.20 0.00 4.30
2305 2711 3.260100 CCAGGCTTGTGGGTCCCT 61.260 66.667 10.00 0.00 33.46 4.20
2306 2712 3.256960 TCCAGGCTTGTGGGTCCC 61.257 66.667 0.00 0.00 38.26 4.46
2307 2713 2.352805 CTCCAGGCTTGTGGGTCC 59.647 66.667 0.00 0.00 38.26 4.46
2308 2714 2.352805 CCTCCAGGCTTGTGGGTC 59.647 66.667 0.00 0.00 38.26 4.46
2309 2715 3.260100 CCCTCCAGGCTTGTGGGT 61.260 66.667 15.69 0.00 38.26 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.